HEADER HYDROLASE 22-JUN-13 4LCN TITLE CRYTSAL STRUCTURE OF NE0047 IN COMPLEX WITH 2'-DEOXY-GUANOSINE COMPND MOL_ID: 1; COMPND 2 MOLECULE: CYTIDINE AND DEOXYCYTIDYLATE DEAMINASE ZINC-BINDING REGION; COMPND 3 CHAIN: A, B; COMPND 4 EC: 3.5.-.-; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: NITROSOMONAS EUROPAEA; SOURCE 3 ORGANISM_TAXID: 228410; SOURCE 4 STRAIN: ATCC 19718 / NBRC 14298; SOURCE 5 GENE: NE0047; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID KEYWDS CDA FOLD, DEAMINASE, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR R.ANAND,A.BITRA,A.BISWAS REVDAT 3 16-OCT-24 4LCN 1 REMARK REVDAT 2 08-NOV-23 4LCN 1 REMARK SEQADV LINK REVDAT 1 22-JAN-14 4LCN 0 JRNL AUTH A.BITRA,A.BISWAS,R.ANAND JRNL TITL STRUCTURAL BASIS OF THE SUBSTRATE SPECIFICITY OF CYTIDINE JRNL TITL 2 DEAMINASE SUPERFAMILY GUANINE DEAMINASE JRNL REF BIOCHEMISTRY V. 52 8106 2013 JRNL REFN ISSN 0006-2960 JRNL PMID 24083949 JRNL DOI 10.1021/BI400818E REMARK 2 REMARK 2 RESOLUTION. 1.80 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.6.0117 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.80 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 34.76 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 81.6 REMARK 3 NUMBER OF REFLECTIONS : 22579 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.169 REMARK 3 R VALUE (WORKING SET) : 0.167 REMARK 3 FREE R VALUE : 0.207 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.200 REMARK 3 FREE R VALUE TEST SET COUNT : 1247 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.80 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.85 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1440 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 77.89 REMARK 3 BIN R VALUE (WORKING SET) : 0.2330 REMARK 3 BIN FREE R VALUE SET COUNT : 92 REMARK 3 BIN FREE R VALUE : 0.2820 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2699 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 33 REMARK 3 SOLVENT ATOMS : 160 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 21.39 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.01000 REMARK 3 B22 (A**2) : -0.01000 REMARK 3 B33 (A**2) : -0.01000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.168 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.145 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.081 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 2.596 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.962 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.948 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2783 ; 0.019 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3788 ; 2.015 ; 1.981 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 369 ; 6.255 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 114 ;37.327 ;23.421 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 411 ;14.572 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 25 ;19.997 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 438 ; 0.131 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2131 ; 0.011 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN USED IF PRESENT IN REMARK 3 THE INPUT REMARK 4 REMARK 4 4LCN COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 23-JUL-13. REMARK 100 THE DEPOSITION ID IS D_1000080462. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 14-FEB-13 REMARK 200 TEMPERATURE (KELVIN) : NULL REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : BM14 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : NULL REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 225 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : IMOSFLM REMARK 200 DATA SCALING SOFTWARE : IMOSFLM REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 23864 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.800 REMARK 200 RESOLUTION RANGE LOW (A) : 35.920 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 81.9 REMARK 200 DATA REDUNDANCY : 3.700 REMARK 200 R MERGE (I) : 0.06700 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 10.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.80 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.90 REMARK 200 COMPLETENESS FOR SHELL (%) : 79.3 REMARK 200 DATA REDUNDANCY IN SHELL : 3.60 REMARK 200 R MERGE FOR SHELL (I) : 0.29500 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 4.000 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: 2G84 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 33.68 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 1.85 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.225M MGCL2, 25% PEG 3350, 0.1M BIS REMARK 280 -TRIS (PH 5.5), VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 291K, REMARK 280 PH 7.5 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 19.01000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 54.79500 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 36.65500 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 54.79500 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 19.01000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 36.65500 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 5210 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 14200 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -93.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A -1 REMARK 465 HIS A 0 REMARK 465 GLY A 190 REMARK 465 VAL A 191 REMARK 465 HIS A 192 REMARK 465 LYS A 193 REMARK 465 GLY A 194 REMARK 465 SER A 195 REMARK 465 GLY B -1 REMARK 465 HIS B 0 REMARK 465 ASN B 181 REMARK 465 GLY B 182 REMARK 465 VAL B 183 REMARK 465 ILE B 184 REMARK 465 TYR B 185 REMARK 465 ASN B 186 REMARK 465 ALA B 187 REMARK 465 ARG B 188 REMARK 465 CYS B 189 REMARK 465 GLY B 190 REMARK 465 VAL B 191 REMARK 465 HIS B 192 REMARK 465 LYS B 193 REMARK 465 GLY B 194 REMARK 465 SER B 195 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 TRP A 150 CE2 TRP A 150 CD2 0.074 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 29 NE - CZ - NH2 ANGL. DEV. = -3.2 DEGREES REMARK 500 ASP A 142 CB - CG - OD1 ANGL. DEV. = 5.5 DEGREES REMARK 500 ARG B 38 NE - CZ - NH1 ANGL. DEV. = 3.8 DEGREES REMARK 500 ASP B 142 CB - CG - OD1 ANGL. DEV. = 6.0 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PRO A 47 47.53 -74.32 REMARK 500 ALA A 76 53.83 -91.64 REMARK 500 ALA A 130 -81.02 -99.17 REMARK 500 ASN B 2 -58.65 88.13 REMARK 500 ASN B 18 21.45 -141.93 REMARK 500 ALA B 43 36.10 -95.49 REMARK 500 PRO B 47 57.70 -92.09 REMARK 500 ALA B 130 -83.30 -99.23 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 201 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 77 ND1 REMARK 620 2 CYS A 112 SG 107.4 REMARK 620 3 CYS A 115 SG 110.3 121.8 REMARK 620 4 HOH A 362 O 110.3 103.5 102.8 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B 201 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS B 77 ND1 REMARK 620 2 CYS B 112 SG 104.4 REMARK 620 3 CYS B 115 SG 111.0 119.0 REMARK 620 4 HOH B 303 O 107.1 105.9 108.7 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GNG A 202 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 203 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN B 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO B 202 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO B 203 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4HRQ RELATED DB: PDB REMARK 900 NE0047-8-AZAGUANINE BOUND STRUCTURE REMARK 900 RELATED ID: 4HRW RELATED DB: PDB REMARK 900 NE0047 (E79A) -8-AZAGUANINE BOUND STRUCTURE REMARK 900 RELATED ID: 2G84 RELATED DB: PDB REMARK 900 NATIVE NE0047 REMARK 900 RELATED ID: 4LC5 RELATED DB: PDB REMARK 900 RELATED ID: 4LCO RELATED DB: PDB REMARK 900 RELATED ID: 4LCP RELATED DB: PDB REMARK 900 RELATED ID: 4LD2 RELATED DB: PDB REMARK 900 RELATED ID: 4LD4 RELATED DB: PDB DBREF 4LCN A 1 193 UNP Q82Y41 Q82Y41_NITEU 1 193 DBREF 4LCN B 1 193 UNP Q82Y41 Q82Y41_NITEU 1 193 SEQADV 4LCN GLY A -1 UNP Q82Y41 EXPRESSION TAG SEQADV 4LCN HIS A 0 UNP Q82Y41 EXPRESSION TAG SEQADV 4LCN GLY A 194 UNP Q82Y41 EXPRESSION TAG SEQADV 4LCN SER A 195 UNP Q82Y41 EXPRESSION TAG SEQADV 4LCN GLY B -1 UNP Q82Y41 EXPRESSION TAG SEQADV 4LCN HIS B 0 UNP Q82Y41 EXPRESSION TAG SEQADV 4LCN GLY B 194 UNP Q82Y41 EXPRESSION TAG SEQADV 4LCN SER B 195 UNP Q82Y41 EXPRESSION TAG SEQRES 1 A 197 GLY HIS MET ASN ASP ALA LEU HIS ILE GLY LEU PRO PRO SEQRES 2 A 197 PHE LEU VAL GLN ALA ASN ASN GLU PRO ARG VAL LEU ALA SEQRES 3 A 197 ALA PRO GLU ALA ARG MET GLY TYR VAL LEU GLU LEU VAL SEQRES 4 A 197 ARG ALA ASN ILE ALA ALA ASP GLY GLY PRO PHE ALA ALA SEQRES 5 A 197 ALA VAL PHE GLU ARG ASP SER GLY LEU LEU ILE ALA ALA SEQRES 6 A 197 GLY THR ASN ARG VAL VAL PRO GLY ARG CYS SER ALA ALA SEQRES 7 A 197 HIS ALA GLU ILE LEU ALA LEU SER LEU ALA GLN ALA LYS SEQRES 8 A 197 LEU ASP THR HIS ASP LEU SER ALA ASP GLY LEU PRO ALA SEQRES 9 A 197 CYS GLU LEU VAL THR SER ALA GLU PRO CYS VAL MET CYS SEQRES 10 A 197 PHE GLY ALA VAL ILE TRP SER GLY VAL ARG SER LEU VAL SEQRES 11 A 197 CYS ALA ALA ARG SER ASP ASP VAL GLU ALA ILE GLY PHE SEQRES 12 A 197 ASP GLU GLY PRO ARG PRO GLU ASN TRP MET GLY GLY LEU SEQRES 13 A 197 GLU ALA ARG GLY ILE THR VAL THR THR GLY LEU LEU ARG SEQRES 14 A 197 ASP ALA ALA CYS ALA LEU LEU ARG GLU TYR ASN ALA CYS SEQRES 15 A 197 ASN GLY VAL ILE TYR ASN ALA ARG CYS GLY VAL HIS LYS SEQRES 16 A 197 GLY SER SEQRES 1 B 197 GLY HIS MET ASN ASP ALA LEU HIS ILE GLY LEU PRO PRO SEQRES 2 B 197 PHE LEU VAL GLN ALA ASN ASN GLU PRO ARG VAL LEU ALA SEQRES 3 B 197 ALA PRO GLU ALA ARG MET GLY TYR VAL LEU GLU LEU VAL SEQRES 4 B 197 ARG ALA ASN ILE ALA ALA ASP GLY GLY PRO PHE ALA ALA SEQRES 5 B 197 ALA VAL PHE GLU ARG ASP SER GLY LEU LEU ILE ALA ALA SEQRES 6 B 197 GLY THR ASN ARG VAL VAL PRO GLY ARG CYS SER ALA ALA SEQRES 7 B 197 HIS ALA GLU ILE LEU ALA LEU SER LEU ALA GLN ALA LYS SEQRES 8 B 197 LEU ASP THR HIS ASP LEU SER ALA ASP GLY LEU PRO ALA SEQRES 9 B 197 CYS GLU LEU VAL THR SER ALA GLU PRO CYS VAL MET CYS SEQRES 10 B 197 PHE GLY ALA VAL ILE TRP SER GLY VAL ARG SER LEU VAL SEQRES 11 B 197 CYS ALA ALA ARG SER ASP ASP VAL GLU ALA ILE GLY PHE SEQRES 12 B 197 ASP GLU GLY PRO ARG PRO GLU ASN TRP MET GLY GLY LEU SEQRES 13 B 197 GLU ALA ARG GLY ILE THR VAL THR THR GLY LEU LEU ARG SEQRES 14 B 197 ASP ALA ALA CYS ALA LEU LEU ARG GLU TYR ASN ALA CYS SEQRES 15 B 197 ASN GLY VAL ILE TYR ASN ALA ARG CYS GLY VAL HIS LYS SEQRES 16 B 197 GLY SER HET ZN A 201 1 HET GNG A 202 19 HET EDO A 203 4 HET ZN B 201 1 HET EDO B 202 4 HET EDO B 203 4 HETNAM ZN ZINC ION HETNAM GNG 2'-DEOXY-GUANOSINE HETNAM EDO 1,2-ETHANEDIOL HETSYN EDO ETHYLENE GLYCOL FORMUL 3 ZN 2(ZN 2+) FORMUL 4 GNG C10 H13 N5 O4 FORMUL 5 EDO 3(C2 H6 O2) FORMUL 9 HOH *160(H2 O) HELIX 1 1 PRO A 10 GLU A 19 1 10 HELIX 2 2 ALA A 25 ALA A 43 1 19 HELIX 3 3 HIS A 77 ASP A 91 1 15 HELIX 4 4 CYS A 112 GLY A 123 1 12 HELIX 5 5 ARG A 132 ILE A 139 1 8 HELIX 6 6 ASN A 149 ARG A 157 1 9 HELIX 7 7 LEU A 166 ASN A 181 1 16 HELIX 8 8 PRO B 10 ASN B 17 1 8 HELIX 9 9 ALA B 25 ALA B 43 1 19 HELIX 10 10 ARG B 67 ARG B 72 1 6 HELIX 11 11 HIS B 77 LEU B 90 1 14 HELIX 12 12 CYS B 112 GLY B 123 1 12 HELIX 13 13 ARG B 132 ALA B 138 1 7 HELIX 14 14 ASN B 149 ARG B 157 1 9 HELIX 15 15 LEU B 166 CYS B 180 1 15 SHEET 1 A 2 ALA A 4 GLY A 8 0 SHEET 2 A 2 ALA B 4 GLY B 8 -1 O ILE B 7 N LEU A 5 SHEET 1 B 5 LEU A 60 THR A 65 0 SHEET 2 B 5 ALA A 49 GLU A 54 -1 N VAL A 52 O ILE A 61 SHEET 3 B 5 CYS A 103 ALA A 109 -1 O VAL A 106 N ALA A 51 SHEET 4 B 5 SER A 126 ALA A 131 1 O VAL A 128 N THR A 107 SHEET 5 B 5 THR A 160 THR A 162 1 O THR A 160 N LEU A 127 SHEET 1 C 5 LEU B 60 THR B 65 0 SHEET 2 C 5 ALA B 49 GLU B 54 -1 N VAL B 52 O ALA B 62 SHEET 3 C 5 CYS B 103 ALA B 109 -1 O GLU B 104 N PHE B 53 SHEET 4 C 5 SER B 126 ALA B 131 1 O VAL B 128 N THR B 107 SHEET 5 C 5 THR B 160 THR B 162 1 O THR B 162 N CYS B 129 SSBOND 1 CYS A 180 CYS A 189 1555 1555 2.08 LINK ND1 HIS A 77 ZN ZN A 201 1555 1555 2.14 LINK SG CYS A 112 ZN ZN A 201 1555 1555 2.30 LINK SG CYS A 115 ZN ZN A 201 1555 1555 2.36 LINK ZN ZN A 201 O HOH A 362 1555 1555 2.05 LINK ND1 HIS B 77 ZN ZN B 201 1555 1555 2.04 LINK SG CYS B 112 ZN ZN B 201 1555 1555 2.38 LINK SG CYS B 115 ZN ZN B 201 1555 1555 2.30 LINK ZN ZN B 201 O HOH B 303 1555 1555 2.06 SITE 1 AC1 4 HIS A 77 CYS A 112 CYS A 115 HOH A 362 SITE 1 AC2 14 PHE A 48 ASN A 66 HIS A 77 ALA A 78 SITE 2 AC2 14 GLU A 79 ALA A 109 GLU A 110 CYS A 112 SITE 3 AC2 14 PHE A 141 ASP A 142 EDO A 203 HOH A 314 SITE 4 AC2 14 HOH A 362 TRP B 121 SITE 1 AC3 3 ASN A 66 GNG A 202 HOH A 363 SITE 1 AC4 4 HIS B 77 CYS B 112 CYS B 115 HOH B 303 SITE 1 AC5 5 GLY B 8 ARG B 67 GLY B 71 HOH B 376 SITE 2 AC5 5 HOH B 380 SITE 1 AC6 8 PHE B 48 HIS B 77 GLU B 110 GLU B 143 SITE 2 AC6 8 HOH B 303 HOH B 304 HOH B 314 HOH B 322 CRYST1 38.020 73.310 109.590 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.026302 0.000000 0.000000 0.00000 SCALE2 0.000000 0.013641 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009125 0.00000