HEADER MEMBRANE PROTEIN/HYDROLASE 24-JUN-13 4LDE TITLE STRUCTURE OF BETA2 ADRENOCEPTOR BOUND TO BI167107 AND AN ENGINEERED TITLE 2 NANOBODY COMPND MOL_ID: 1; COMPND 2 MOLECULE: LYSOZYME, BETA-2 ADRENERGIC RECEPTOR; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: UNP RESIDUES 29-348 WITH A DELETION OF RESIDUES 235-263; COMPND 5 SYNONYM: ENDOLYSIN, LYSIS PROTEIN, MURAMIDASE, BETA-2 ADRENORECEPTOR, COMPND 6 BETA-2 ADRENOCEPTOR; COMPND 7 EC: 3.2.1.17; COMPND 8 ENGINEERED: YES; COMPND 9 MUTATION: YES; COMPND 10 MOL_ID: 2; COMPND 11 MOLECULE: CAMELID ANTIBODY FRAGMENT; COMPND 12 CHAIN: B; COMPND 13 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ENTEROBACTERIA PHAGE T4, HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 10665, 9606; SOURCE 5 GENE: ADRB2, E, ADRB2R, B2AR; SOURCE 6 EXPRESSION_SYSTEM: SPODOPTERA FRUGIPERDA; SOURCE 7 EXPRESSION_SYSTEM_COMMON: FALL ARMYWORM; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 7108; SOURCE 9 EXPRESSION_SYSTEM_CELL_LINE: SF9; SOURCE 10 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 11 EXPRESSION_SYSTEM_PLASMID: PVL1392; SOURCE 12 MOL_ID: 2; SOURCE 13 ORGANISM_SCIENTIFIC: LAMA GLAMA; SOURCE 14 ORGANISM_COMMON: LLAMA; SOURCE 15 ORGANISM_TAXID: 9844; SOURCE 16 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 17 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 18 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 19 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 20 EXPRESSION_SYSTEM_PLASMID: PET26B KEYWDS G PROTEIN COUPLED RECEPTOR, MEMBRANE PROTEIN-HYDROLASE COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR A.M.RING,A.MANGLIK,A.C.KRUSE,M.D.ENOS,W.I.WEIS,K.C.GARCIA,B.K.KOBILKA REVDAT 5 27-NOV-24 4LDE 1 REMARK REVDAT 4 20-SEP-23 4LDE 1 REMARK SEQADV LINK REVDAT 3 09-AUG-17 4LDE 1 SOURCE REMARK REVDAT 2 30-OCT-13 4LDE 1 JRNL REVDAT 1 25-SEP-13 4LDE 0 JRNL AUTH A.M.RING,A.MANGLIK,A.C.KRUSE,M.D.ENOS,W.I.WEIS,K.C.GARCIA, JRNL AUTH 2 B.K.KOBILKA JRNL TITL ADRENALINE-ACTIVATED STRUCTURE OF BETA 2-ADRENOCEPTOR JRNL TITL 2 STABILIZED BY AN ENGINEERED NANOBODY. JRNL REF NATURE V. 502 575 2013 JRNL REFN ISSN 0028-0836 JRNL PMID 24056936 JRNL DOI 10.1038/NATURE12572 REMARK 2 REMARK 2 RESOLUTION. 2.79 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE: DEV_1241) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.79 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 38.40 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.490 REMARK 3 COMPLETENESS FOR RANGE (%) : 95.8 REMARK 3 NUMBER OF REFLECTIONS : 25028 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.228 REMARK 3 R VALUE (WORKING SET) : 0.227 REMARK 3 FREE R VALUE : 0.256 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.010 REMARK 3 FREE R VALUE TEST SET COUNT : 1255 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 38.4238 - 5.7890 0.98 2910 153 0.2071 0.2334 REMARK 3 2 5.7890 - 4.5973 0.98 2740 144 0.2069 0.2266 REMARK 3 3 4.5973 - 4.0169 0.99 2745 147 0.1844 0.2223 REMARK 3 4 4.0169 - 3.6499 0.99 2720 143 0.2052 0.2396 REMARK 3 5 3.6499 - 3.3885 0.99 2701 142 0.2398 0.2946 REMARK 3 6 3.3885 - 3.1888 0.98 2669 142 0.2622 0.2778 REMARK 3 7 3.1888 - 3.0292 0.98 2680 141 0.2853 0.3085 REMARK 3 8 3.0292 - 2.8974 0.93 2483 130 0.3158 0.3074 REMARK 3 9 2.8974 - 2.7900 0.79 2125 113 0.3680 0.4126 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.430 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 28.160 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.005 4643 REMARK 3 ANGLE : 0.725 6298 REMARK 3 CHIRALITY : 0.052 723 REMARK 3 PLANARITY : 0.003 783 REMARK 3 DIHEDRAL : 12.219 1624 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 5 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 858 THROUGH 1023 ) REMARK 3 ORIGIN FOR THE GROUP (A): -16.0036 -29.6026 -77.6145 REMARK 3 T TENSOR REMARK 3 T11: 0.4018 T22: 0.2411 REMARK 3 T33: 0.4333 T12: 0.0312 REMARK 3 T13: -0.0044 T23: -0.0144 REMARK 3 L TENSOR REMARK 3 L11: 4.5845 L22: 5.1656 REMARK 3 L33: 2.2186 L12: 4.1714 REMARK 3 L13: 0.9858 L23: 0.5688 REMARK 3 S TENSOR REMARK 3 S11: 0.1056 S12: 0.1973 S13: -0.1477 REMARK 3 S21: 0.3608 S22: 0.0559 S23: 0.0538 REMARK 3 S31: 0.1606 S32: 0.1057 S33: -0.1394 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 1024 THROUGH 1342 ) REMARK 3 ORIGIN FOR THE GROUP (A): -4.2045 -13.9949 -39.3775 REMARK 3 T TENSOR REMARK 3 T11: 0.3517 T22: 0.4847 REMARK 3 T33: 0.2475 T12: 0.0010 REMARK 3 T13: 0.0224 T23: -0.0556 REMARK 3 L TENSOR REMARK 3 L11: 2.4386 L22: 1.5743 REMARK 3 L33: 3.8238 L12: 0.3646 REMARK 3 L13: 0.0447 L23: -1.0339 REMARK 3 S TENSOR REMARK 3 S11: 0.0209 S12: -0.3538 S13: 0.0208 REMARK 3 S21: 0.0289 S22: -0.0362 S23: 0.0340 REMARK 3 S31: 0.0471 S32: -0.2127 S33: 0.0005 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 1 THROUGH 52 ) REMARK 3 ORIGIN FOR THE GROUP (A): -1.2821 -17.4503 1.8354 REMARK 3 T TENSOR REMARK 3 T11: 0.3812 T22: 1.1486 REMARK 3 T33: 0.4178 T12: -0.0304 REMARK 3 T13: -0.0621 T23: -0.0106 REMARK 3 L TENSOR REMARK 3 L11: 1.4410 L22: 1.8855 REMARK 3 L33: 5.5909 L12: -0.3224 REMARK 3 L13: -1.6450 L23: 1.3926 REMARK 3 S TENSOR REMARK 3 S11: 0.0075 S12: -0.2903 S13: 0.0155 REMARK 3 S21: 0.1620 S22: 0.1193 S23: 0.1363 REMARK 3 S31: 0.0896 S32: -0.3307 S33: -0.1211 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 53 THROUGH 76 ) REMARK 3 ORIGIN FOR THE GROUP (A): 8.1521 -15.9804 -0.2069 REMARK 3 T TENSOR REMARK 3 T11: 0.5171 T22: 0.9639 REMARK 3 T33: 0.4409 T12: 0.0187 REMARK 3 T13: -0.1121 T23: -0.0658 REMARK 3 L TENSOR REMARK 3 L11: 8.6225 L22: 1.6358 REMARK 3 L33: 6.5781 L12: -1.2800 REMARK 3 L13: -3.4838 L23: -0.3136 REMARK 3 S TENSOR REMARK 3 S11: -0.2924 S12: -0.4328 S13: -0.2852 REMARK 3 S21: 0.5865 S22: -0.2638 S23: -0.2467 REMARK 3 S31: 0.2826 S32: 0.2713 S33: 0.5667 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 77 THROUGH 120 ) REMARK 3 ORIGIN FOR THE GROUP (A): -2.0410 -15.7060 1.1698 REMARK 3 T TENSOR REMARK 3 T11: 0.4209 T22: 1.0532 REMARK 3 T33: 0.4754 T12: 0.0224 REMARK 3 T13: -0.0948 T23: -0.0769 REMARK 3 L TENSOR REMARK 3 L11: 2.3539 L22: 2.1111 REMARK 3 L33: 4.8988 L12: -1.0458 REMARK 3 L13: -1.3507 L23: 0.4846 REMARK 3 S TENSOR REMARK 3 S11: -0.3274 S12: -0.4314 S13: 0.2469 REMARK 3 S21: 0.4123 S22: 0.1307 S23: -0.1248 REMARK 3 S31: 0.0759 S32: -0.2101 S33: 0.2064 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4LDE COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 12-JUL-13. REMARK 100 THE DEPOSITION ID IS D_1000080489. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 13-DEC-12 REMARK 200 TEMPERATURE (KELVIN) : 78 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 7 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 23-ID-B REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.033 REMARK 200 MONOCHROMATOR : DOUBLE CRYSTAL CRYO-COOLED REMARK 200 SI(111) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 300 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : PHENIX (PHENIX.REFINE: DEV_1241) REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 25028 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.790 REMARK 200 RESOLUTION RANGE LOW (A) : 38.400 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 95.8 REMARK 200 DATA REDUNDANCY : 3.900 REMARK 200 R MERGE (I) : 0.17500 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 4.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.80 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.90 REMARK 200 COMPLETENESS FOR SHELL (%) : 81.9 REMARK 200 DATA REDUNDANCY IN SHELL : 2.90 REMARK 200 R MERGE FOR SHELL (I) : 0.58400 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.800 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 3P0G REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 67.35 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.77 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 100 MM MES PH 6.2-6.7, 40-100 MM REMARK 280 AMMONIUM PHOSPHATE DIBASIC, 18-24% PEG400, LIPIDIC CUBIC PHASE, REMARK 280 TEMPERATURE 293K, PH 6.5 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 24.83500 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 151.55000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 33.24000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 151.55000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 24.83500 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 33.24000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2330 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 28500 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -18.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ASP A 852 REMARK 465 TYR A 853 REMARK 465 LYS A 854 REMARK 465 ASP A 855 REMARK 465 ASP A 856 REMARK 465 ASP A 857 REMARK 465 LYS A 1260 REMARK 465 ILE A 1261 REMARK 465 ASP A 1262 REMARK 465 ARG A 1343 REMARK 465 ARG A 1344 REMARK 465 SER A 1345 REMARK 465 SER A 1346 REMARK 465 LEU A 1347 REMARK 465 LYS A 1348 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ASP A 858 CG OD1 OD2 REMARK 470 LEU A 862 CG CD1 CD2 REMARK 470 LYS A 913 CD CE NZ REMARK 470 LYS A1060 CG CD CE NZ REMARK 470 GLU A1062 CG CD OE1 OE2 REMARK 470 LYS A1149 CG CD CE NZ REMARK 470 PHE A1223 CG CD1 CD2 CE1 CE2 CZ REMARK 470 GLN A1224 CG CD OE1 NE2 REMARK 470 GLN A1231 CG CD OE1 NE2 REMARK 470 LYS A1263 CG CD CE NZ REMARK 470 PHE A1264 CG CD1 CD2 CE1 CE2 CZ REMARK 470 LYS A1270 CG CD CE NZ REMARK 470 GLN B 1 CG CD OE1 NE2 REMARK 470 GLN B 13 CG CD OE1 NE2 REMARK 470 SER B 25 OG REMARK 470 SER B 120 OG REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OH TYR B 37 NZ LYS B 98 2.07 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PHE A 864 54.79 73.11 REMARK 500 ASP A 885 -165.49 -76.97 REMARK 500 ARG A 990 77.36 -103.05 REMARK 500 GLN A1065 48.52 -93.64 REMARK 500 LYS A1097 -12.44 64.78 REMARK 500 SER A1165 -80.84 -122.64 REMARK 500 CYS A1191 31.11 -141.24 REMARK 500 PHE A1208 -56.46 -128.95 REMARK 500 ALA A1265 -149.46 -107.36 REMARK 500 ASN A1301 1.53 59.75 REMARK 500 PRO B 41 107.72 -54.66 REMARK 500 VAL B 48 -70.32 -97.49 REMARK 500 ASN B 73 -73.24 -61.19 REMARK 500 ALA B 91 -167.95 -166.81 REMARK 500 PHE B 100 56.47 -97.60 REMARK 500 ILE B 103 -50.74 73.50 REMARK 500 SER B 119 98.49 -63.01 REMARK 500 REMARK 500 REMARK: NULL REMARK 610 REMARK 610 MISSING HETEROATOM REMARK 610 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 610 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 610 I=INSERTION CODE): REMARK 610 M RES C SSEQI REMARK 610 1WV A 1403 REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A1402 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASN A1103 OD1 REMARK 620 2 CYS A1184 O 134.7 REMARK 620 3 GLU A1187 O 73.6 82.1 REMARK 620 4 CYS A1190 O 117.8 102.3 96.6 REMARK 620 5 HOH A1502 O 102.6 91.7 165.8 97.2 REMARK 620 N 1 2 3 4 REMARK 650 REMARK 650 HELIX REMARK 650 DETERMINATION METHOD: AUTHOR DETERMINED REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE P0G A 1401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NA A 1402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE 1WV A 1403 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4LDL RELATED DB: PDB REMARK 900 THE SAME PROTEIN COMPLEXED TO HYDROXYBENZYLISOPROTERENOL REMARK 900 RELATED ID: 4LDO RELATED DB: PDB REMARK 900 THE SAME PROTEIN BOUND TO ADRENALINE AND AN ENGINEERED NANOBODY DBREF 4LDE A 867 1026 UNP P00720 LYS_BPT4 2 161 DBREF 4LDE A 1029 1263 UNP P07550 ADRB2_HUMAN 29 235 DBREF 4LDE A 1264 1348 UNP P07550 ADRB2_HUMAN 264 348 DBREF 4LDE B 1 120 PDB 4LDE 4LDE 1 120 SEQADV 4LDE ASP A 852 UNP P00720 EXPRESSION TAG SEQADV 4LDE TYR A 853 UNP P00720 EXPRESSION TAG SEQADV 4LDE LYS A 854 UNP P00720 EXPRESSION TAG SEQADV 4LDE ASP A 855 UNP P00720 EXPRESSION TAG SEQADV 4LDE ASP A 856 UNP P00720 EXPRESSION TAG SEQADV 4LDE ASP A 857 UNP P00720 EXPRESSION TAG SEQADV 4LDE ASP A 858 UNP P00720 EXPRESSION TAG SEQADV 4LDE ALA A 859 UNP P00720 EXPRESSION TAG SEQADV 4LDE GLU A 860 UNP P00720 EXPRESSION TAG SEQADV 4LDE ASN A 861 UNP P00720 EXPRESSION TAG SEQADV 4LDE LEU A 862 UNP P00720 EXPRESSION TAG SEQADV 4LDE TYR A 863 UNP P00720 EXPRESSION TAG SEQADV 4LDE PHE A 864 UNP P00720 EXPRESSION TAG SEQADV 4LDE GLN A 865 UNP P00720 EXPRESSION TAG SEQADV 4LDE GLY A 866 UNP P00720 EXPRESSION TAG SEQADV 4LDE THR A 919 UNP P00720 CYS 54 ENGINEERED MUTATION SEQADV 4LDE ALA A 962 UNP P00720 CYS 97 ENGINEERED MUTATION SEQADV 4LDE ALA A 1027 UNP P00720 LINKER SEQADV 4LDE ALA A 1028 UNP P00720 LINKER SEQADV 4LDE THR A 1096 UNP P07550 MET 96 ENGINEERED MUTATION SEQADV 4LDE THR A 1098 UNP P07550 MET 98 ENGINEERED MUTATION SEQADV 4LDE GLU A 1187 UNP P07550 ASN 187 ENGINEERED MUTATION SEQADV 4LDE ALA A 1265 UNP P07550 CYS 265 ENGINEERED MUTATION SEQRES 1 A 469 ASP TYR LYS ASP ASP ASP ASP ALA GLU ASN LEU TYR PHE SEQRES 2 A 469 GLN GLY ASN ILE PHE GLU MET LEU ARG ILE ASP GLU GLY SEQRES 3 A 469 LEU ARG LEU LYS ILE TYR LYS ASP THR GLU GLY TYR TYR SEQRES 4 A 469 THR ILE GLY ILE GLY HIS LEU LEU THR LYS SER PRO SER SEQRES 5 A 469 LEU ASN ALA ALA LYS SER GLU LEU ASP LYS ALA ILE GLY SEQRES 6 A 469 ARG ASN THR ASN GLY VAL ILE THR LYS ASP GLU ALA GLU SEQRES 7 A 469 LYS LEU PHE ASN GLN ASP VAL ASP ALA ALA VAL ARG GLY SEQRES 8 A 469 ILE LEU ARG ASN ALA LYS LEU LYS PRO VAL TYR ASP SER SEQRES 9 A 469 LEU ASP ALA VAL ARG ARG ALA ALA LEU ILE ASN MET VAL SEQRES 10 A 469 PHE GLN MET GLY GLU THR GLY VAL ALA GLY PHE THR ASN SEQRES 11 A 469 SER LEU ARG MET LEU GLN GLN LYS ARG TRP ASP GLU ALA SEQRES 12 A 469 ALA VAL ASN LEU ALA LYS SER ARG TRP TYR ASN GLN THR SEQRES 13 A 469 PRO ASN ARG ALA LYS ARG VAL ILE THR THR PHE ARG THR SEQRES 14 A 469 GLY THR TRP ASP ALA TYR ALA ALA ASP GLU VAL TRP VAL SEQRES 15 A 469 VAL GLY MET GLY ILE VAL MET SER LEU ILE VAL LEU ALA SEQRES 16 A 469 ILE VAL PHE GLY ASN VAL LEU VAL ILE THR ALA ILE ALA SEQRES 17 A 469 LYS PHE GLU ARG LEU GLN THR VAL THR ASN TYR PHE ILE SEQRES 18 A 469 THR SER LEU ALA CYS ALA ASP LEU VAL MET GLY LEU ALA SEQRES 19 A 469 VAL VAL PRO PHE GLY ALA ALA HIS ILE LEU THR LYS THR SEQRES 20 A 469 TRP THR PHE GLY ASN PHE TRP CYS GLU PHE TRP THR SER SEQRES 21 A 469 ILE ASP VAL LEU CYS VAL THR ALA SER ILE GLU THR LEU SEQRES 22 A 469 CYS VAL ILE ALA VAL ASP ARG TYR PHE ALA ILE THR SER SEQRES 23 A 469 PRO PHE LYS TYR GLN SER LEU LEU THR LYS ASN LYS ALA SEQRES 24 A 469 ARG VAL ILE ILE LEU MET VAL TRP ILE VAL SER GLY LEU SEQRES 25 A 469 THR SER PHE LEU PRO ILE GLN MET HIS TRP TYR ARG ALA SEQRES 26 A 469 THR HIS GLN GLU ALA ILE ASN CYS TYR ALA GLU GLU THR SEQRES 27 A 469 CYS CYS ASP PHE PHE THR ASN GLN ALA TYR ALA ILE ALA SEQRES 28 A 469 SER SER ILE VAL SER PHE TYR VAL PRO LEU VAL ILE MET SEQRES 29 A 469 VAL PHE VAL TYR SER ARG VAL PHE GLN GLU ALA LYS ARG SEQRES 30 A 469 GLN LEU GLN LYS ILE ASP LYS PHE ALA LEU LYS GLU HIS SEQRES 31 A 469 LYS ALA LEU LYS THR LEU GLY ILE ILE MET GLY THR PHE SEQRES 32 A 469 THR LEU CYS TRP LEU PRO PHE PHE ILE VAL ASN ILE VAL SEQRES 33 A 469 HIS VAL ILE GLN ASP ASN LEU ILE ARG LYS GLU VAL TYR SEQRES 34 A 469 ILE LEU LEU ASN TRP ILE GLY TYR VAL ASN SER GLY PHE SEQRES 35 A 469 ASN PRO LEU ILE TYR CYS ARG SER PRO ASP PHE ARG ILE SEQRES 36 A 469 ALA PHE GLN GLU LEU LEU CYS LEU ARG ARG SER SER LEU SEQRES 37 A 469 LYS SEQRES 1 B 120 GLN VAL GLN LEU GLN GLU SER GLY GLY GLY LEU VAL GLN SEQRES 2 B 120 ALA GLY GLY SER LEU ARG LEU SER CYS ALA ALA SER GLY SEQRES 3 B 120 SER ILE PHE ALA LEU ASN ILE MET GLY TRP TYR ARG GLN SEQRES 4 B 120 ALA PRO GLY LYS GLN ARG GLU LEU VAL ALA ALA ILE HIS SEQRES 5 B 120 SER GLY GLY THR THR ASN TYR ALA ASN SER VAL LYS GLY SEQRES 6 B 120 ARG PHE THR ILE SER ARG ASP ASN ALA ALA ASN THR VAL SEQRES 7 B 120 TYR LEU GLN MET ASN SER LEU LYS PRO GLU ASP THR ALA SEQRES 8 B 120 VAL TYR TYR CYS ASN VAL LYS ASP PHE GLY ALA ILE ILE SEQRES 9 B 120 TYR ASP TYR ASP TYR TRP GLY GLN GLY THR GLN VAL THR SEQRES 10 B 120 VAL SER SER HET P0G A1401 27 HET NA A1402 1 HET 1WV A1403 15 HETNAM P0G 8-[(1R)-2-{[1,1-DIMETHYL-2-(2-METHYLPHENYL) HETNAM 2 P0G ETHYL]AMINO}-1-HYDROXYETHYL]-5-HYDROXY-2H-1,4- HETNAM 3 P0G BENZOXAZIN-3(4H)-ONE HETNAM NA SODIUM ION HETNAM 1WV (2S)-2,3-DIHYDROXYPROPYL (7Z)-TETRADEC-7-ENOATE FORMUL 3 P0G C21 H26 N2 O4 FORMUL 4 NA NA 1+ FORMUL 5 1WV C17 H32 O4 FORMUL 6 HOH *84(H2 O) HELIX 1 1 ASN A 867 GLU A 876 1 10 HELIX 2 2 SER A 903 GLY A 916 1 14 HELIX 3 3 THR A 924 ASN A 946 1 23 HELIX 4 4 LEU A 949 SER A 955 1 7 HELIX 5 5 ASP A 957 MET A 971 1 15 HELIX 6 6 GLU A 973 GLY A 978 1 6 HELIX 7 7 THR A 980 GLN A 988 1 9 HELIX 8 8 ARG A 990 ALA A 999 1 10 HELIX 9 9 ARG A 1002 GLN A 1006 1 5 HELIX 10 10 PRO A 1008 GLY A 1021 1 14 HELIX 11 11 ASP A 1029 PHE A 1061 1 33 HELIX 12 12 THR A 1066 ALA A 1085 1 20 HELIX 13 13 ALA A 1085 THR A 1096 1 12 HELIX 14 14 GLY A 1102 THR A 1136 1 35 HELIX 15 15 PRO A 1138 LEU A 1144 1 7 HELIX 16 16 LYS A 1147 THR A 1164 1 18 HELIX 17 17 SER A 1165 MET A 1171 1 7 HELIX 18 18 HIS A 1178 GLU A 1187 1 10 HELIX 19 19 ASN A 1196 PHE A 1208 1 13 HELIX 20 20 PHE A 1208 ALA A 1226 1 19 HELIX 21 21 LYS A 1227 GLN A 1229 5 3 HELIX 22 22 LEU A 1266 GLN A 1299 1 34 HELIX 23 23 ARG A 1304 VAL A 1317 1 14 HELIX 24 24 VAL A 1317 ASN A 1322 1 6 HELIX 25 25 PRO A 1323 ILE A 1325 5 3 HELIX 26 26 SER A 1329 LEU A 1340 1 12 HELIX 27 27 LYS B 86 THR B 90 5 5 SHEET 1 A 3 ARG A 879 LYS A 884 0 SHEET 2 A 3 TYR A 890 GLY A 893 -1 O THR A 891 N TYR A 883 SHEET 3 A 3 HIS A 896 THR A 899 -1 O LEU A 898 N TYR A 890 SHEET 1 B 4 GLN B 3 SER B 7 0 SHEET 2 B 4 LEU B 18 SER B 25 -1 O SER B 25 N GLN B 3 SHEET 3 B 4 THR B 77 MET B 82 -1 O MET B 82 N LEU B 18 SHEET 4 B 4 PHE B 67 ARG B 71 -1 N THR B 68 O GLN B 81 SHEET 1 C 6 GLY B 10 GLN B 13 0 SHEET 2 C 6 THR B 114 SER B 119 1 O SER B 119 N VAL B 12 SHEET 3 C 6 ALA B 91 ASP B 99 -1 N TYR B 93 O THR B 114 SHEET 4 C 6 ASN B 32 GLN B 39 -1 N GLY B 35 O ASN B 96 SHEET 5 C 6 ARG B 45 HIS B 52 -1 O ALA B 49 N TRP B 36 SHEET 6 C 6 THR B 57 TYR B 59 -1 O ASN B 58 N ALA B 50 SHEET 1 D 4 GLY B 10 GLN B 13 0 SHEET 2 D 4 THR B 114 SER B 119 1 O SER B 119 N VAL B 12 SHEET 3 D 4 ALA B 91 ASP B 99 -1 N TYR B 93 O THR B 114 SHEET 4 D 4 TYR B 107 TRP B 110 -1 O TYR B 107 N ASP B 99 SSBOND 1 CYS A 1106 CYS A 1191 1555 1555 2.03 SSBOND 2 CYS A 1184 CYS A 1190 1555 1555 2.04 SSBOND 3 CYS B 22 CYS B 95 1555 1555 2.03 LINK OD1 ASN A1103 NA NA A1402 1555 1555 2.40 LINK O CYS A1184 NA NA A1402 1555 1555 2.33 LINK O GLU A1187 NA NA A1402 1555 1555 2.46 LINK O CYS A1190 NA NA A1402 1555 1555 2.41 LINK NA NA A1402 O HOH A1502 1555 1555 2.43 SITE 1 AC1 13 TRP A1109 ASP A1113 VAL A1114 CYS A1191 SITE 2 AC1 13 PHE A1193 ALA A1200 SER A1203 SER A1207 SITE 3 AC1 13 ASN A1293 TYR A1308 ILE A1309 ASN A1312 SITE 4 AC1 13 TYR A1316 SITE 1 AC2 5 ASN A1103 CYS A1184 GLU A1187 CYS A1190 SITE 2 AC2 5 HOH A1502 SITE 1 AC3 1 HOH A1564 CRYST1 49.670 66.480 303.100 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.020133 0.000000 0.000000 0.00000 SCALE2 0.000000 0.015042 0.000000 0.00000 SCALE3 0.000000 0.000000 0.003299 0.00000