data_4LDN # _entry.id 4LDN # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.397 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 4LDN pdb_00004ldn 10.2210/pdb4ldn/pdb RCSB RCSB080497 ? ? WWPDB D_1000080497 ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2013-07-03 2 'Structure model' 1 1 2017-11-15 3 'Structure model' 1 2 2024-10-09 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Refinement description' 2 3 'Structure model' 'Data collection' 3 3 'Structure model' 'Database references' 4 3 'Structure model' 'Derived calculations' 5 3 'Structure model' 'Structure summary' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 2 'Structure model' software 2 3 'Structure model' chem_comp_atom 3 3 'Structure model' chem_comp_bond 4 3 'Structure model' database_2 5 3 'Structure model' pdbx_entry_details 6 3 'Structure model' pdbx_modification_feature 7 3 'Structure model' struct_conn 8 3 'Structure model' struct_ref_seq_dif 9 3 'Structure model' struct_site # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 2 'Structure model' '_software.classification' 2 2 'Structure model' '_software.name' 3 3 'Structure model' '_database_2.pdbx_DOI' 4 3 'Structure model' '_database_2.pdbx_database_accession' 5 3 'Structure model' '_struct_conn.pdbx_leaving_atom_flag' 6 3 'Structure model' '_struct_ref_seq_dif.details' 7 3 'Structure model' '_struct_site.pdbx_auth_asym_id' 8 3 'Structure model' '_struct_site.pdbx_auth_comp_id' 9 3 'Structure model' '_struct_site.pdbx_auth_seq_id' # _pdbx_database_status.entry_id 4LDN _pdbx_database_status.status_code REL _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.recvd_initial_deposition_date 2013-06-24 _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry Y _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_nmr_data ? # _pdbx_database_related.db_name TargetTrack _pdbx_database_related.db_id NYSGRC-029521 _pdbx_database_related.details . _pdbx_database_related.content_type unspecified # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Sampathkumar, P.' 1 'Almo, S.C.' 2 'New York Structural Genomics Research Consortium (NYSGRC)' 3 # _citation.id primary _citation.title 'Crystal structure of a putative purine nucleoside phosphorylase from Vibrio fischeri ES114 (Target NYSGRC-029521)' _citation.journal_abbrev 'to be published' _citation.journal_volume ? _citation.page_first ? _citation.page_last ? _citation.year ? _citation.journal_id_ASTM ? _citation.country ? _citation.journal_id_ISSN ? _citation.journal_id_CSD 0353 _citation.book_publisher ? _citation.pdbx_database_id_PubMed ? _citation.pdbx_database_id_DOI ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Sampathkumar, P.' 1 ? primary 'Ahmed, M.' 2 ? primary 'Attonito, J.' 3 ? primary 'Bhosle, R.' 4 ? primary 'Bonanno, J.' 5 ? primary 'Chamala, S.' 6 ? primary 'Chowdhury, S.' 7 ? primary 'Eromenok, G.' 8 ? primary 'Fiser, A.' 9 ? primary 'Glenn, A.S.' 10 ? primary 'Hammonds, J.' 11 ? primary 'Himmel, D.M.' 12 ? primary 'Hillerich, B.' 13 ? primary 'Khafizov, K.' 14 ? primary 'Lafleur, J.' 15 ? primary 'Love, J.D.' 16 ? primary 'Stead, M.' 17 ? primary 'Seidel, R.' 18 ? primary 'Toro, R.' 19 ? primary 'Morisco, L.L.' 20 ? primary 'Sojitra, S.S.' 21 ? primary 'Wasserman, S.R.' 22 ? primary 'Suarez, J.' 23 ? primary 'Schramm, V.L.' 24 ? primary 'Almo, S.C.' 25 ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'Purine nucleoside phosphorylase DeoD-type' 29741.729 1 2.4.2.1 ? ? ? 2 non-polymer syn 'PHOSPHATE ION' 94.971 2 ? ? ? ? 3 non-polymer syn 1,2-ETHANEDIOL 62.068 5 ? ? ? ? 4 water nat water 18.015 164 ? ? ? ? # _entity_name_com.entity_id 1 _entity_name_com.name PNP # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer yes _entity_poly.pdbx_seq_one_letter_code ;(MSE)HHHHHHSSGVDLGTENLYFQS(MSE)STPHINAPLDAFADTIL(MSE)PGDPLRAKLIAETYLENVVQVTDVRG (MSE)LGFTGEFKGRKISV(MSE)GHG(MSE)GAPSASIYFHEL(MSE)TTYKVKNFIRIGSCGAIHDDVKLKDLIVAIG ASTDSK(MSE)NRIRFKDNDFAATANYN(MSE)LSECVNTLKTTDINYLVGNVFSSDLFYRPDEEQYD(MSE)(MSE)AR YGILGVE(MSE)EVNALYSAAAENHCNAVALCTVTDHIKNHEHLTADERRTELHE(MSE)INVALDVALKLPTE ; _entity_poly.pdbx_seq_one_letter_code_can ;MHHHHHHSSGVDLGTENLYFQSMSTPHINAPLDAFADTILMPGDPLRAKLIAETYLENVVQVTDVRGMLGFTGEFKGRKI SVMGHGMGAPSASIYFHELMTTYKVKNFIRIGSCGAIHDDVKLKDLIVAIGASTDSKMNRIRFKDNDFAATANYNMLSEC VNTLKTTDINYLVGNVFSSDLFYRPDEEQYDMMARYGILGVEMEVNALYSAAAENHCNAVALCTVTDHIKNHEHLTADER RTELHEMINVALDVALKLPTE ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier NYSGRC-029521 # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 'PHOSPHATE ION' PO4 3 1,2-ETHANEDIOL EDO 4 water HOH # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 MSE n 1 2 HIS n 1 3 HIS n 1 4 HIS n 1 5 HIS n 1 6 HIS n 1 7 HIS n 1 8 SER n 1 9 SER n 1 10 GLY n 1 11 VAL n 1 12 ASP n 1 13 LEU n 1 14 GLY n 1 15 THR n 1 16 GLU n 1 17 ASN n 1 18 LEU n 1 19 TYR n 1 20 PHE n 1 21 GLN n 1 22 SER n 1 23 MSE n 1 24 SER n 1 25 THR n 1 26 PRO n 1 27 HIS n 1 28 ILE n 1 29 ASN n 1 30 ALA n 1 31 PRO n 1 32 LEU n 1 33 ASP n 1 34 ALA n 1 35 PHE n 1 36 ALA n 1 37 ASP n 1 38 THR n 1 39 ILE n 1 40 LEU n 1 41 MSE n 1 42 PRO n 1 43 GLY n 1 44 ASP n 1 45 PRO n 1 46 LEU n 1 47 ARG n 1 48 ALA n 1 49 LYS n 1 50 LEU n 1 51 ILE n 1 52 ALA n 1 53 GLU n 1 54 THR n 1 55 TYR n 1 56 LEU n 1 57 GLU n 1 58 ASN n 1 59 VAL n 1 60 VAL n 1 61 GLN n 1 62 VAL n 1 63 THR n 1 64 ASP n 1 65 VAL n 1 66 ARG n 1 67 GLY n 1 68 MSE n 1 69 LEU n 1 70 GLY n 1 71 PHE n 1 72 THR n 1 73 GLY n 1 74 GLU n 1 75 PHE n 1 76 LYS n 1 77 GLY n 1 78 ARG n 1 79 LYS n 1 80 ILE n 1 81 SER n 1 82 VAL n 1 83 MSE n 1 84 GLY n 1 85 HIS n 1 86 GLY n 1 87 MSE n 1 88 GLY n 1 89 ALA n 1 90 PRO n 1 91 SER n 1 92 ALA n 1 93 SER n 1 94 ILE n 1 95 TYR n 1 96 PHE n 1 97 HIS n 1 98 GLU n 1 99 LEU n 1 100 MSE n 1 101 THR n 1 102 THR n 1 103 TYR n 1 104 LYS n 1 105 VAL n 1 106 LYS n 1 107 ASN n 1 108 PHE n 1 109 ILE n 1 110 ARG n 1 111 ILE n 1 112 GLY n 1 113 SER n 1 114 CYS n 1 115 GLY n 1 116 ALA n 1 117 ILE n 1 118 HIS n 1 119 ASP n 1 120 ASP n 1 121 VAL n 1 122 LYS n 1 123 LEU n 1 124 LYS n 1 125 ASP n 1 126 LEU n 1 127 ILE n 1 128 VAL n 1 129 ALA n 1 130 ILE n 1 131 GLY n 1 132 ALA n 1 133 SER n 1 134 THR n 1 135 ASP n 1 136 SER n 1 137 LYS n 1 138 MSE n 1 139 ASN n 1 140 ARG n 1 141 ILE n 1 142 ARG n 1 143 PHE n 1 144 LYS n 1 145 ASP n 1 146 ASN n 1 147 ASP n 1 148 PHE n 1 149 ALA n 1 150 ALA n 1 151 THR n 1 152 ALA n 1 153 ASN n 1 154 TYR n 1 155 ASN n 1 156 MSE n 1 157 LEU n 1 158 SER n 1 159 GLU n 1 160 CYS n 1 161 VAL n 1 162 ASN n 1 163 THR n 1 164 LEU n 1 165 LYS n 1 166 THR n 1 167 THR n 1 168 ASP n 1 169 ILE n 1 170 ASN n 1 171 TYR n 1 172 LEU n 1 173 VAL n 1 174 GLY n 1 175 ASN n 1 176 VAL n 1 177 PHE n 1 178 SER n 1 179 SER n 1 180 ASP n 1 181 LEU n 1 182 PHE n 1 183 TYR n 1 184 ARG n 1 185 PRO n 1 186 ASP n 1 187 GLU n 1 188 GLU n 1 189 GLN n 1 190 TYR n 1 191 ASP n 1 192 MSE n 1 193 MSE n 1 194 ALA n 1 195 ARG n 1 196 TYR n 1 197 GLY n 1 198 ILE n 1 199 LEU n 1 200 GLY n 1 201 VAL n 1 202 GLU n 1 203 MSE n 1 204 GLU n 1 205 VAL n 1 206 ASN n 1 207 ALA n 1 208 LEU n 1 209 TYR n 1 210 SER n 1 211 ALA n 1 212 ALA n 1 213 ALA n 1 214 GLU n 1 215 ASN n 1 216 HIS n 1 217 CYS n 1 218 ASN n 1 219 ALA n 1 220 VAL n 1 221 ALA n 1 222 LEU n 1 223 CYS n 1 224 THR n 1 225 VAL n 1 226 THR n 1 227 ASP n 1 228 HIS n 1 229 ILE n 1 230 LYS n 1 231 ASN n 1 232 HIS n 1 233 GLU n 1 234 HIS n 1 235 LEU n 1 236 THR n 1 237 ALA n 1 238 ASP n 1 239 GLU n 1 240 ARG n 1 241 ARG n 1 242 THR n 1 243 GLU n 1 244 LEU n 1 245 HIS n 1 246 GLU n 1 247 MSE n 1 248 ILE n 1 249 ASN n 1 250 VAL n 1 251 ALA n 1 252 LEU n 1 253 ASP n 1 254 VAL n 1 255 ALA n 1 256 LEU n 1 257 LYS n 1 258 LEU n 1 259 PRO n 1 260 THR n 1 261 GLU n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene 'deoD3, VF_A0968' _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ES114 _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Vibrio fischeri' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 312309 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 469008 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain 'BL21(DE3) CodonPlus RIL' _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type plasmid _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name pSGC-His _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 EDO non-polymer . 1,2-ETHANEDIOL 'ETHYLENE GLYCOL' 'C2 H6 O2' 62.068 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MSE 'L-peptide linking' n SELENOMETHIONINE ? 'C5 H11 N O2 Se' 196.106 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PO4 non-polymer . 'PHOSPHATE ION' ? 'O4 P -3' 94.971 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 MSE 1 -21 ? ? ? A . n A 1 2 HIS 2 -20 ? ? ? A . n A 1 3 HIS 3 -19 ? ? ? A . n A 1 4 HIS 4 -18 ? ? ? A . n A 1 5 HIS 5 -17 ? ? ? A . n A 1 6 HIS 6 -16 ? ? ? A . n A 1 7 HIS 7 -15 ? ? ? A . n A 1 8 SER 8 -14 ? ? ? A . n A 1 9 SER 9 -13 ? ? ? A . n A 1 10 GLY 10 -12 ? ? ? A . n A 1 11 VAL 11 -11 ? ? ? A . n A 1 12 ASP 12 -10 ? ? ? A . n A 1 13 LEU 13 -9 ? ? ? A . n A 1 14 GLY 14 -8 ? ? ? A . n A 1 15 THR 15 -7 ? ? ? A . n A 1 16 GLU 16 -6 ? ? ? A . n A 1 17 ASN 17 -5 -5 ASN ASN A . n A 1 18 LEU 18 -4 -4 LEU LEU A . n A 1 19 TYR 19 -3 -3 TYR TYR A . n A 1 20 PHE 20 -2 -2 PHE PHE A . n A 1 21 GLN 21 -1 -1 GLN GLN A . n A 1 22 SER 22 0 0 SER SER A . n A 1 23 MSE 23 1 1 MSE MSE A . n A 1 24 SER 24 2 2 SER SER A . n A 1 25 THR 25 3 3 THR THR A . n A 1 26 PRO 26 4 4 PRO PRO A . n A 1 27 HIS 27 5 5 HIS HIS A . n A 1 28 ILE 28 6 6 ILE ILE A . n A 1 29 ASN 29 7 7 ASN ASN A . n A 1 30 ALA 30 8 8 ALA ALA A . n A 1 31 PRO 31 9 9 PRO PRO A . n A 1 32 LEU 32 10 10 LEU LEU A . n A 1 33 ASP 33 11 11 ASP ASP A . n A 1 34 ALA 34 12 12 ALA ALA A . n A 1 35 PHE 35 13 13 PHE PHE A . n A 1 36 ALA 36 14 14 ALA ALA A . n A 1 37 ASP 37 15 15 ASP ASP A . n A 1 38 THR 38 16 16 THR THR A . n A 1 39 ILE 39 17 17 ILE ILE A . n A 1 40 LEU 40 18 18 LEU LEU A . n A 1 41 MSE 41 19 19 MSE MSE A . n A 1 42 PRO 42 20 20 PRO PRO A . n A 1 43 GLY 43 21 21 GLY GLY A . n A 1 44 ASP 44 22 22 ASP ASP A . n A 1 45 PRO 45 23 23 PRO PRO A . n A 1 46 LEU 46 24 24 LEU LEU A . n A 1 47 ARG 47 25 25 ARG ARG A . n A 1 48 ALA 48 26 26 ALA ALA A . n A 1 49 LYS 49 27 27 LYS LYS A . n A 1 50 LEU 50 28 28 LEU LEU A . n A 1 51 ILE 51 29 29 ILE ILE A . n A 1 52 ALA 52 30 30 ALA ALA A . n A 1 53 GLU 53 31 31 GLU GLU A . n A 1 54 THR 54 32 32 THR THR A . n A 1 55 TYR 55 33 33 TYR TYR A . n A 1 56 LEU 56 34 34 LEU LEU A . n A 1 57 GLU 57 35 35 GLU GLU A . n A 1 58 ASN 58 36 36 ASN ASN A . n A 1 59 VAL 59 37 37 VAL VAL A . n A 1 60 VAL 60 38 38 VAL VAL A . n A 1 61 GLN 61 39 39 GLN GLN A . n A 1 62 VAL 62 40 40 VAL VAL A . n A 1 63 THR 63 41 41 THR THR A . n A 1 64 ASP 64 42 42 ASP ASP A . n A 1 65 VAL 65 43 43 VAL VAL A . n A 1 66 ARG 66 44 44 ARG ARG A . n A 1 67 GLY 67 45 45 GLY GLY A . n A 1 68 MSE 68 46 46 MSE MSE A . n A 1 69 LEU 69 47 47 LEU LEU A . n A 1 70 GLY 70 48 48 GLY GLY A . n A 1 71 PHE 71 49 49 PHE PHE A . n A 1 72 THR 72 50 50 THR THR A . n A 1 73 GLY 73 51 51 GLY GLY A . n A 1 74 GLU 74 52 52 GLU GLU A . n A 1 75 PHE 75 53 53 PHE PHE A . n A 1 76 LYS 76 54 54 LYS LYS A . n A 1 77 GLY 77 55 55 GLY GLY A . n A 1 78 ARG 78 56 56 ARG ARG A . n A 1 79 LYS 79 57 57 LYS LYS A . n A 1 80 ILE 80 58 58 ILE ILE A . n A 1 81 SER 81 59 59 SER SER A . n A 1 82 VAL 82 60 60 VAL VAL A . n A 1 83 MSE 83 61 61 MSE MSE A . n A 1 84 GLY 84 62 62 GLY GLY A . n A 1 85 HIS 85 63 63 HIS HIS A . n A 1 86 GLY 86 64 64 GLY GLY A . n A 1 87 MSE 87 65 65 MSE MSE A . n A 1 88 GLY 88 66 66 GLY GLY A . n A 1 89 ALA 89 67 67 ALA ALA A . n A 1 90 PRO 90 68 68 PRO PRO A . n A 1 91 SER 91 69 69 SER SER A . n A 1 92 ALA 92 70 70 ALA ALA A . n A 1 93 SER 93 71 71 SER SER A . n A 1 94 ILE 94 72 72 ILE ILE A . n A 1 95 TYR 95 73 73 TYR TYR A . n A 1 96 PHE 96 74 74 PHE PHE A . n A 1 97 HIS 97 75 75 HIS HIS A . n A 1 98 GLU 98 76 76 GLU GLU A . n A 1 99 LEU 99 77 77 LEU LEU A . n A 1 100 MSE 100 78 78 MSE MSE A . n A 1 101 THR 101 79 79 THR THR A . n A 1 102 THR 102 80 80 THR THR A . n A 1 103 TYR 103 81 81 TYR TYR A . n A 1 104 LYS 104 82 82 LYS LYS A . n A 1 105 VAL 105 83 83 VAL VAL A . n A 1 106 LYS 106 84 84 LYS LYS A . n A 1 107 ASN 107 85 85 ASN ASN A . n A 1 108 PHE 108 86 86 PHE PHE A . n A 1 109 ILE 109 87 87 ILE ILE A . n A 1 110 ARG 110 88 88 ARG ARG A . n A 1 111 ILE 111 89 89 ILE ILE A . n A 1 112 GLY 112 90 90 GLY GLY A . n A 1 113 SER 113 91 91 SER SER A . n A 1 114 CYS 114 92 92 CYS CYS A . n A 1 115 GLY 115 93 93 GLY GLY A . n A 1 116 ALA 116 94 94 ALA ALA A . n A 1 117 ILE 117 95 95 ILE ILE A . n A 1 118 HIS 118 96 96 HIS HIS A . n A 1 119 ASP 119 97 97 ASP ASP A . n A 1 120 ASP 120 98 98 ASP ASP A . n A 1 121 VAL 121 99 99 VAL VAL A . n A 1 122 LYS 122 100 100 LYS LYS A . n A 1 123 LEU 123 101 101 LEU LEU A . n A 1 124 LYS 124 102 102 LYS LYS A . n A 1 125 ASP 125 103 103 ASP ASP A . n A 1 126 LEU 126 104 104 LEU LEU A . n A 1 127 ILE 127 105 105 ILE ILE A . n A 1 128 VAL 128 106 106 VAL VAL A . n A 1 129 ALA 129 107 107 ALA ALA A . n A 1 130 ILE 130 108 108 ILE ILE A . n A 1 131 GLY 131 109 109 GLY GLY A . n A 1 132 ALA 132 110 110 ALA ALA A . n A 1 133 SER 133 111 111 SER SER A . n A 1 134 THR 134 112 112 THR THR A . n A 1 135 ASP 135 113 113 ASP ASP A . n A 1 136 SER 136 114 114 SER SER A . n A 1 137 LYS 137 115 115 LYS LYS A . n A 1 138 MSE 138 116 116 MSE MSE A . n A 1 139 ASN 139 117 117 ASN ASN A . n A 1 140 ARG 140 118 118 ARG ARG A . n A 1 141 ILE 141 119 119 ILE ILE A . n A 1 142 ARG 142 120 120 ARG ARG A . n A 1 143 PHE 143 121 121 PHE PHE A . n A 1 144 LYS 144 122 122 LYS LYS A . n A 1 145 ASP 145 123 123 ASP ASP A . n A 1 146 ASN 146 124 124 ASN ASN A . n A 1 147 ASP 147 125 125 ASP ASP A . n A 1 148 PHE 148 126 126 PHE PHE A . n A 1 149 ALA 149 127 127 ALA ALA A . n A 1 150 ALA 150 128 128 ALA ALA A . n A 1 151 THR 151 129 129 THR THR A . n A 1 152 ALA 152 130 130 ALA ALA A . n A 1 153 ASN 153 131 131 ASN ASN A . n A 1 154 TYR 154 132 132 TYR TYR A . n A 1 155 ASN 155 133 133 ASN ASN A . n A 1 156 MSE 156 134 134 MSE MSE A . n A 1 157 LEU 157 135 135 LEU LEU A . n A 1 158 SER 158 136 136 SER SER A . n A 1 159 GLU 159 137 137 GLU GLU A . n A 1 160 CYS 160 138 138 CYS CYS A . n A 1 161 VAL 161 139 139 VAL VAL A . n A 1 162 ASN 162 140 140 ASN ASN A . n A 1 163 THR 163 141 141 THR THR A . n A 1 164 LEU 164 142 142 LEU LEU A . n A 1 165 LYS 165 143 143 LYS LYS A . n A 1 166 THR 166 144 144 THR THR A . n A 1 167 THR 167 145 145 THR THR A . n A 1 168 ASP 168 146 146 ASP ASP A . n A 1 169 ILE 169 147 147 ILE ILE A . n A 1 170 ASN 170 148 148 ASN ASN A . n A 1 171 TYR 171 149 149 TYR TYR A . n A 1 172 LEU 172 150 150 LEU LEU A . n A 1 173 VAL 173 151 151 VAL VAL A . n A 1 174 GLY 174 152 152 GLY GLY A . n A 1 175 ASN 175 153 153 ASN ASN A . n A 1 176 VAL 176 154 154 VAL VAL A . n A 1 177 PHE 177 155 155 PHE PHE A . n A 1 178 SER 178 156 156 SER SER A . n A 1 179 SER 179 157 157 SER SER A . n A 1 180 ASP 180 158 158 ASP ASP A . n A 1 181 LEU 181 159 159 LEU LEU A . n A 1 182 PHE 182 160 160 PHE PHE A . n A 1 183 TYR 183 161 161 TYR TYR A . n A 1 184 ARG 184 162 162 ARG ARG A . n A 1 185 PRO 185 163 163 PRO PRO A . n A 1 186 ASP 186 164 164 ASP ASP A . n A 1 187 GLU 187 165 165 GLU GLU A . n A 1 188 GLU 188 166 166 GLU GLU A . n A 1 189 GLN 189 167 167 GLN GLN A . n A 1 190 TYR 190 168 168 TYR TYR A . n A 1 191 ASP 191 169 169 ASP ASP A . n A 1 192 MSE 192 170 170 MSE MSE A . n A 1 193 MSE 193 171 171 MSE MSE A . n A 1 194 ALA 194 172 172 ALA ALA A . n A 1 195 ARG 195 173 173 ARG ARG A . n A 1 196 TYR 196 174 174 TYR TYR A . n A 1 197 GLY 197 175 175 GLY GLY A . n A 1 198 ILE 198 176 176 ILE ILE A . n A 1 199 LEU 199 177 177 LEU LEU A . n A 1 200 GLY 200 178 178 GLY GLY A . n A 1 201 VAL 201 179 179 VAL VAL A . n A 1 202 GLU 202 180 180 GLU GLU A . n A 1 203 MSE 203 181 181 MSE MSE A . n A 1 204 GLU 204 182 182 GLU GLU A . n A 1 205 VAL 205 183 183 VAL VAL A . n A 1 206 ASN 206 184 184 ASN ASN A . n A 1 207 ALA 207 185 185 ALA ALA A . n A 1 208 LEU 208 186 186 LEU LEU A . n A 1 209 TYR 209 187 187 TYR TYR A . n A 1 210 SER 210 188 188 SER SER A . n A 1 211 ALA 211 189 189 ALA ALA A . n A 1 212 ALA 212 190 190 ALA ALA A . n A 1 213 ALA 213 191 191 ALA ALA A . n A 1 214 GLU 214 192 192 GLU GLU A . n A 1 215 ASN 215 193 193 ASN ASN A . n A 1 216 HIS 216 194 194 HIS HIS A . n A 1 217 CYS 217 195 195 CYS CYS A . n A 1 218 ASN 218 196 196 ASN ASN A . n A 1 219 ALA 219 197 197 ALA ALA A . n A 1 220 VAL 220 198 198 VAL VAL A . n A 1 221 ALA 221 199 199 ALA ALA A . n A 1 222 LEU 222 200 200 LEU LEU A . n A 1 223 CYS 223 201 201 CYS CYS A . n A 1 224 THR 224 202 202 THR THR A . n A 1 225 VAL 225 203 203 VAL VAL A . n A 1 226 THR 226 204 204 THR THR A . n A 1 227 ASP 227 205 205 ASP ASP A . n A 1 228 HIS 228 206 206 HIS HIS A . n A 1 229 ILE 229 207 207 ILE ILE A . n A 1 230 LYS 230 208 208 LYS LYS A . n A 1 231 ASN 231 209 209 ASN ASN A . n A 1 232 HIS 232 210 210 HIS HIS A . n A 1 233 GLU 233 211 211 GLU GLU A . n A 1 234 HIS 234 212 212 HIS HIS A . n A 1 235 LEU 235 213 213 LEU LEU A . n A 1 236 THR 236 214 214 THR THR A . n A 1 237 ALA 237 215 215 ALA ALA A . n A 1 238 ASP 238 216 216 ASP ASP A . n A 1 239 GLU 239 217 217 GLU GLU A . n A 1 240 ARG 240 218 218 ARG ARG A . n A 1 241 ARG 241 219 219 ARG ARG A . n A 1 242 THR 242 220 220 THR THR A . n A 1 243 GLU 243 221 221 GLU GLU A . n A 1 244 LEU 244 222 222 LEU LEU A . n A 1 245 HIS 245 223 223 HIS HIS A . n A 1 246 GLU 246 224 224 GLU GLU A . n A 1 247 MSE 247 225 225 MSE MSE A . n A 1 248 ILE 248 226 226 ILE ILE A . n A 1 249 ASN 249 227 227 ASN ASN A . n A 1 250 VAL 250 228 228 VAL VAL A . n A 1 251 ALA 251 229 229 ALA ALA A . n A 1 252 LEU 252 230 230 LEU LEU A . n A 1 253 ASP 253 231 231 ASP ASP A . n A 1 254 VAL 254 232 232 VAL VAL A . n A 1 255 ALA 255 233 233 ALA ALA A . n A 1 256 LEU 256 234 234 LEU LEU A . n A 1 257 LYS 257 235 235 LYS LYS A . n A 1 258 LEU 258 236 236 LEU LEU A . n A 1 259 PRO 259 237 237 PRO PRO A . n A 1 260 THR 260 238 238 THR THR A . n A 1 261 GLU 261 239 ? ? ? A . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 PO4 1 301 1 PO4 PO4 A . C 2 PO4 1 302 2 PO4 PO4 A . D 3 EDO 1 303 1 EDO EDO A . E 3 EDO 1 304 2 EDO EDO A . F 3 EDO 1 305 3 EDO EDO A . G 3 EDO 1 306 4 EDO EDO A . H 3 EDO 1 307 5 EDO EDO A . I 4 HOH 1 401 1 HOH HOH A . I 4 HOH 2 402 2 HOH HOH A . I 4 HOH 3 403 3 HOH HOH A . I 4 HOH 4 404 4 HOH HOH A . I 4 HOH 5 405 5 HOH HOH A . I 4 HOH 6 406 6 HOH HOH A . I 4 HOH 7 407 7 HOH HOH A . I 4 HOH 8 408 8 HOH HOH A . I 4 HOH 9 409 9 HOH HOH A . I 4 HOH 10 410 10 HOH HOH A . I 4 HOH 11 411 11 HOH HOH A . I 4 HOH 12 412 12 HOH HOH A . I 4 HOH 13 413 13 HOH HOH A . I 4 HOH 14 414 14 HOH HOH A . I 4 HOH 15 415 15 HOH HOH A . I 4 HOH 16 416 16 HOH HOH A . I 4 HOH 17 417 17 HOH HOH A . I 4 HOH 18 418 18 HOH HOH A . I 4 HOH 19 419 19 HOH HOH A . I 4 HOH 20 420 20 HOH HOH A . I 4 HOH 21 421 21 HOH HOH A . I 4 HOH 22 422 22 HOH HOH A . I 4 HOH 23 423 23 HOH HOH A . I 4 HOH 24 424 24 HOH HOH A . I 4 HOH 25 425 25 HOH HOH A . I 4 HOH 26 426 26 HOH HOH A . I 4 HOH 27 427 27 HOH HOH A . I 4 HOH 28 428 28 HOH HOH A . I 4 HOH 29 429 29 HOH HOH A . I 4 HOH 30 430 30 HOH HOH A . I 4 HOH 31 431 31 HOH HOH A . I 4 HOH 32 432 32 HOH HOH A . I 4 HOH 33 433 33 HOH HOH A . I 4 HOH 34 434 34 HOH HOH A . I 4 HOH 35 435 35 HOH HOH A . I 4 HOH 36 436 36 HOH HOH A . I 4 HOH 37 437 37 HOH HOH A . I 4 HOH 38 438 38 HOH HOH A . I 4 HOH 39 439 39 HOH HOH A . I 4 HOH 40 440 40 HOH HOH A . I 4 HOH 41 441 41 HOH HOH A . I 4 HOH 42 442 42 HOH HOH A . I 4 HOH 43 443 43 HOH HOH A . I 4 HOH 44 444 44 HOH HOH A . I 4 HOH 45 445 45 HOH HOH A . I 4 HOH 46 446 46 HOH HOH A . I 4 HOH 47 447 47 HOH HOH A . I 4 HOH 48 448 48 HOH HOH A . I 4 HOH 49 449 49 HOH HOH A . I 4 HOH 50 450 50 HOH HOH A . I 4 HOH 51 451 51 HOH HOH A . I 4 HOH 52 452 52 HOH HOH A . I 4 HOH 53 453 53 HOH HOH A . I 4 HOH 54 454 54 HOH HOH A . I 4 HOH 55 455 55 HOH HOH A . I 4 HOH 56 456 56 HOH HOH A . I 4 HOH 57 457 57 HOH HOH A . I 4 HOH 58 458 58 HOH HOH A . I 4 HOH 59 459 59 HOH HOH A . I 4 HOH 60 460 60 HOH HOH A . I 4 HOH 61 461 61 HOH HOH A . I 4 HOH 62 462 62 HOH HOH A . I 4 HOH 63 463 63 HOH HOH A . I 4 HOH 64 464 64 HOH HOH A . I 4 HOH 65 465 65 HOH HOH A . I 4 HOH 66 466 66 HOH HOH A . I 4 HOH 67 467 67 HOH HOH A . I 4 HOH 68 468 68 HOH HOH A . I 4 HOH 69 469 69 HOH HOH A . I 4 HOH 70 470 70 HOH HOH A . I 4 HOH 71 471 71 HOH HOH A . I 4 HOH 72 472 72 HOH HOH A . I 4 HOH 73 473 73 HOH HOH A . I 4 HOH 74 474 74 HOH HOH A . I 4 HOH 75 475 75 HOH HOH A . I 4 HOH 76 476 76 HOH HOH A . I 4 HOH 77 477 77 HOH HOH A . I 4 HOH 78 478 78 HOH HOH A . I 4 HOH 79 479 79 HOH HOH A . I 4 HOH 80 480 80 HOH HOH A . I 4 HOH 81 481 81 HOH HOH A . I 4 HOH 82 482 82 HOH HOH A . I 4 HOH 83 483 83 HOH HOH A . I 4 HOH 84 484 84 HOH HOH A . I 4 HOH 85 485 85 HOH HOH A . I 4 HOH 86 486 86 HOH HOH A . I 4 HOH 87 487 87 HOH HOH A . I 4 HOH 88 488 88 HOH HOH A . I 4 HOH 89 489 89 HOH HOH A . I 4 HOH 90 490 90 HOH HOH A . I 4 HOH 91 491 91 HOH HOH A . I 4 HOH 92 492 92 HOH HOH A . I 4 HOH 93 493 93 HOH HOH A . I 4 HOH 94 494 94 HOH HOH A . I 4 HOH 95 495 95 HOH HOH A . I 4 HOH 96 496 96 HOH HOH A . I 4 HOH 97 497 97 HOH HOH A . I 4 HOH 98 498 98 HOH HOH A . I 4 HOH 99 499 99 HOH HOH A . I 4 HOH 100 500 100 HOH HOH A . I 4 HOH 101 501 101 HOH HOH A . I 4 HOH 102 502 102 HOH HOH A . I 4 HOH 103 503 103 HOH HOH A . I 4 HOH 104 504 104 HOH HOH A . I 4 HOH 105 505 105 HOH HOH A . I 4 HOH 106 506 106 HOH HOH A . I 4 HOH 107 507 107 HOH HOH A . I 4 HOH 108 508 108 HOH HOH A . I 4 HOH 109 509 109 HOH HOH A . I 4 HOH 110 510 110 HOH HOH A . I 4 HOH 111 511 111 HOH HOH A . I 4 HOH 112 512 112 HOH HOH A . I 4 HOH 113 513 113 HOH HOH A . I 4 HOH 114 514 114 HOH HOH A . I 4 HOH 115 515 115 HOH HOH A . I 4 HOH 116 516 116 HOH HOH A . I 4 HOH 117 517 117 HOH HOH A . I 4 HOH 118 518 118 HOH HOH A . I 4 HOH 119 519 119 HOH HOH A . I 4 HOH 120 520 120 HOH HOH A . I 4 HOH 121 521 121 HOH HOH A . I 4 HOH 122 522 122 HOH HOH A . I 4 HOH 123 523 123 HOH HOH A . I 4 HOH 124 524 124 HOH HOH A . I 4 HOH 125 525 125 HOH HOH A . I 4 HOH 126 526 126 HOH HOH A . I 4 HOH 127 527 127 HOH HOH A . I 4 HOH 128 528 128 HOH HOH A . I 4 HOH 129 529 129 HOH HOH A . I 4 HOH 130 530 130 HOH HOH A . I 4 HOH 131 531 131 HOH HOH A . I 4 HOH 132 532 132 HOH HOH A . I 4 HOH 133 533 133 HOH HOH A . I 4 HOH 134 534 134 HOH HOH A . I 4 HOH 135 535 135 HOH HOH A . I 4 HOH 136 536 136 HOH HOH A . I 4 HOH 137 537 137 HOH HOH A . I 4 HOH 138 538 138 HOH HOH A . I 4 HOH 139 539 139 HOH HOH A . I 4 HOH 140 540 140 HOH HOH A . I 4 HOH 141 541 141 HOH HOH A . I 4 HOH 142 542 142 HOH HOH A . I 4 HOH 143 543 144 HOH HOH A . I 4 HOH 144 544 145 HOH HOH A . I 4 HOH 145 545 147 HOH HOH A . I 4 HOH 146 546 148 HOH HOH A . I 4 HOH 147 547 149 HOH HOH A . I 4 HOH 148 548 150 HOH HOH A . I 4 HOH 149 549 151 HOH HOH A . I 4 HOH 150 550 152 HOH HOH A . I 4 HOH 151 551 153 HOH HOH A . I 4 HOH 152 552 154 HOH HOH A . I 4 HOH 153 553 155 HOH HOH A . I 4 HOH 154 554 156 HOH HOH A . I 4 HOH 155 555 157 HOH HOH A . I 4 HOH 156 556 158 HOH HOH A . I 4 HOH 157 557 159 HOH HOH A . I 4 HOH 158 558 160 HOH HOH A . I 4 HOH 159 559 161 HOH HOH A . I 4 HOH 160 560 162 HOH HOH A . I 4 HOH 161 561 163 HOH HOH A . I 4 HOH 162 562 164 HOH HOH A . I 4 HOH 163 563 165 HOH HOH A . I 4 HOH 164 564 166 HOH HOH A . # loop_ _software.pdbx_ordinal _software.name _software.version _software.date _software.type _software.contact_author _software.contact_author_email _software.classification _software.location _software.language _software.citation_id 1 REFMAC 5.7.0032 ? program 'Garib N. Murshudov' garib@ysbl.york.ac.uk refinement http://www.ccp4.ac.uk/dist/html/refmac5.html Fortran_77 ? 2 PDB_EXTRACT 3.11 'April 22, 2011' package PDB deposit@deposit.rcsb.org 'data extraction' http://sw-tools.pdb.org/apps/PDB_EXTRACT/ C++ ? 3 CBASS . ? ? ? ? 'data collection' ? ? ? 4 XDS . ? ? ? ? 'data reduction' ? ? ? 5 Aimless . ? ? ? ? 'data scaling' ? ? ? 6 SHELX C ? ? ? ? phasing ? ? ? 7 SHELXD . ? ? ? ? phasing ? ? ? 8 SHELXE . ? ? ? ? 'model building' ? ? ? # _cell.length_a 163.115 _cell.length_b 163.115 _cell.length_c 45.339 _cell.angle_alpha 90.000 _cell.angle_beta 90.000 _cell.angle_gamma 120.000 _cell.entry_id 4LDN _cell.pdbx_unique_axis ? _cell.Z_PDB 18 _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.space_group_name_H-M 'H 3 2' _symmetry.entry_id 4LDN _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.Int_Tables_number 155 _symmetry.cell_setting ? _symmetry.space_group_name_Hall ? # _exptl.crystals_number 1 _exptl.entry_id 4LDN _exptl.method 'X-RAY DIFFRACTION' # _exptl_crystal.id 1 _exptl_crystal.density_Matthews 1.95 _exptl_crystal.density_meas ? _exptl_crystal.density_percent_sol 36.97 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, SITTING DROP' _exptl_crystal_grow.pH 10.5 _exptl_crystal_grow.temp 298 _exptl_crystal_grow.pdbx_details ;Protein (20mM HEPES pH7.5, 150mM NaCl, 5% glycerol, and 5mM DTT), Reservoir (MCSG2 #05 - 0.2 M Lithium Sulfate, 0.1 M CAPS:NaOH pH 10.5, 1.2 M NaH2PO4/0.8 M K2HPO4), Cryoprotection (33% Ethylene glycol), VAPOR DIFFUSION, SITTING DROP, temperature 298K ; _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'RAYONIX MX225HE' _diffrn_detector.pdbx_collection_date 2013-04-18 _diffrn_detector.details MIRRORS # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.monochromator 'Diamond(111)' _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.979310 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'APS BEAMLINE 31-ID' _diffrn_source.pdbx_wavelength_list 0.979310 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_synchrotron_site APS _diffrn_source.pdbx_synchrotron_beamline 31-ID # _reflns.entry_id 4LDN _reflns.observed_criterion_sigma_F ? _reflns.observed_criterion_sigma_I 0 _reflns.d_resolution_high 1.48 _reflns.d_resolution_low 40.00 _reflns.number_all ? _reflns.number_obs 37977 _reflns.percent_possible_obs 99.7 _reflns.pdbx_Rmerge_I_obs 0.112 _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI 23.7 _reflns.B_iso_Wilson_estimate 12.00 _reflns.pdbx_redundancy 14.8 _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_ordinal 1 _reflns.pdbx_diffrn_id 1 # _reflns_shell.d_res_high 1.48 _reflns_shell.d_res_low 1.51 _reflns_shell.percent_possible_obs ? _reflns_shell.percent_possible_all 96.8 _reflns_shell.Rmerge_I_obs 0.801 _reflns_shell.meanI_over_sigI_obs 3.7 _reflns_shell.pdbx_Rsym_value ? _reflns_shell.pdbx_redundancy 13.5 _reflns_shell.number_unique_all 1837 _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_unique_obs ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_ordinal 1 _reflns_shell.pdbx_diffrn_id 1 # _refine.entry_id 4LDN _refine.ls_d_res_high 1.4800 _refine.ls_d_res_low 30.8400 _refine.pdbx_ls_sigma_F 0.000 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.ls_percent_reflns_obs 99.6700 _refine.ls_number_reflns_obs 37970 _refine.ls_number_reflns_all ? _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.pdbx_R_Free_selection_details RANDOM _refine.details 'HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS U VALUES : REFINED INDIVIDUALLY' _refine.ls_R_factor_all ? _refine.ls_R_factor_obs 0.1636 _refine.ls_R_factor_R_work 0.1624 _refine.ls_wR_factor_R_work ? _refine.ls_R_factor_R_free 0.1870 _refine.ls_wR_factor_R_free ? _refine.ls_percent_reflns_R_free 5.0000 _refine.ls_number_reflns_R_free 1896 _refine.ls_R_factor_R_free_error ? _refine.B_iso_mean 18.3874 _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.pdbx_isotropic_thermal_model ? _refine.aniso_B[1][1] -0.6200 _refine.aniso_B[2][2] -0.6200 _refine.aniso_B[3][3] 2.0100 _refine.aniso_B[1][2] -0.6200 _refine.aniso_B[1][3] -0.0000 _refine.aniso_B[2][3] -0.0000 _refine.correlation_coeff_Fo_to_Fc 0.9720 _refine.correlation_coeff_Fo_to_Fc_free 0.9640 _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.pdbx_overall_ESU_R 0.0690 _refine.pdbx_overall_ESU_R_Free 0.0690 _refine.overall_SU_ML 0.0520 _refine.overall_SU_B 1.4100 _refine.solvent_model_details MASK _refine.pdbx_solvent_vdw_probe_radii 1.4000 _refine.pdbx_solvent_ion_probe_radii 0.8000 _refine.pdbx_solvent_shrinkage_radii 0.8000 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct SAD _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD' _refine.pdbx_stereochem_target_val_spec_case ? _refine.overall_FOM_work_R_set ? _refine.B_iso_max 66.620 _refine.B_iso_min 7.540 _refine.pdbx_overall_phase_error ? _refine.occupancy_max 1.000 _refine.occupancy_min 0.500 _refine.pdbx_ls_sigma_I ? _refine.ls_redundancy_reflns_obs ? _refine.ls_R_factor_R_free_error_details ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.overall_FOM_free_R_set ? _refine.pdbx_diffrn_id 1 _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 1901 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 30 _refine_hist.number_atoms_solvent 164 _refine_hist.number_atoms_total 2095 _refine_hist.d_res_high 1.4800 _refine_hist.d_res_low 30.8400 # loop_ _refine_ls_restr.type _refine_ls_restr.number _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.pdbx_restraint_function _refine_ls_restr.pdbx_refine_id r_bond_refined_d 2037 0.012 0.019 ? ? 'X-RAY DIFFRACTION' r_bond_other_d 1969 0.002 0.020 ? ? 'X-RAY DIFFRACTION' r_angle_refined_deg 2765 1.636 1.985 ? ? 'X-RAY DIFFRACTION' r_angle_other_deg 4535 0.768 3.000 ? ? 'X-RAY DIFFRACTION' r_dihedral_angle_1_deg 266 6.004 5.000 ? ? 'X-RAY DIFFRACTION' r_dihedral_angle_2_deg 94 36.118 24.362 ? ? 'X-RAY DIFFRACTION' r_dihedral_angle_3_deg 322 12.397 15.000 ? ? 'X-RAY DIFFRACTION' r_dihedral_angle_4_deg 12 18.066 15.000 ? ? 'X-RAY DIFFRACTION' r_chiral_restr 316 0.087 0.200 ? ? 'X-RAY DIFFRACTION' r_gen_planes_refined 2310 0.008 0.020 ? ? 'X-RAY DIFFRACTION' r_gen_planes_other 464 0.001 0.020 ? ? 'X-RAY DIFFRACTION' r_mcbond_it 999 1.251 1.574 ? ? 'X-RAY DIFFRACTION' r_mcbond_other 998 1.248 1.570 ? ? 'X-RAY DIFFRACTION' r_mcangle_it 1253 2.119 2.354 ? ? 'X-RAY DIFFRACTION' # _refine_ls_shell.d_res_high 1.4830 _refine_ls_shell.d_res_low 1.5210 _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.percent_reflns_obs 97.8000 _refine_ls_shell.number_reflns_R_work 2607 _refine_ls_shell.R_factor_all ? _refine_ls_shell.R_factor_R_work 0.2560 _refine_ls_shell.R_factor_R_free 0.2430 _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.number_reflns_R_free 144 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.number_reflns_all 2751 _refine_ls_shell.number_reflns_obs 2607 _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' # _struct.entry_id 4LDN _struct.title 'Crystal structure of a putative purine nucleoside phosphorylase from Vibrio fischeri ES114 (Target NYSGRC-029521)' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 4LDN _struct_keywords.text 'Structural genomics, NYSGRC, PSI-Biology, New York Structural Genomics Research Consortium, TRANSFERASE' _struct_keywords.pdbx_keywords TRANSFERASE # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 2 ? D N N 3 ? E N N 3 ? F N N 3 ? G N N 3 ? H N N 3 ? I N N 4 ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code DEOD3_VIBF1 _struct_ref.pdbx_db_accession Q5DYV8 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;MSTPHINAPLDAFADTILMPGDPLRAKLIAETYLENVVQVTDVRGMLGFTGEFKGRKISVMGHGMGAPSASIYFHELMTT YKVKNFIRIGSCGAIHDDVKLKDLIVAIGASTDSKMNRIRFKDNDFAATANYNMLSECVNTLKTTDINYLVGNVFSSDLF YRPDEEQYDMMARYGILGVEMEVNALYSAAAENHCNAVALCTVTDHIKNHEHLTADERRTELHEMINVALDVALKLPTE ; _struct_ref.pdbx_align_begin 1 _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 4LDN _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 23 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 261 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession Q5DYV8 _struct_ref_seq.db_align_beg 1 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 239 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 1 _struct_ref_seq.pdbx_auth_seq_align_end 239 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 4LDN MSE A 1 ? UNP Q5DYV8 ? ? 'expression tag' -21 1 1 4LDN HIS A 2 ? UNP Q5DYV8 ? ? 'expression tag' -20 2 1 4LDN HIS A 3 ? UNP Q5DYV8 ? ? 'expression tag' -19 3 1 4LDN HIS A 4 ? UNP Q5DYV8 ? ? 'expression tag' -18 4 1 4LDN HIS A 5 ? UNP Q5DYV8 ? ? 'expression tag' -17 5 1 4LDN HIS A 6 ? UNP Q5DYV8 ? ? 'expression tag' -16 6 1 4LDN HIS A 7 ? UNP Q5DYV8 ? ? 'expression tag' -15 7 1 4LDN SER A 8 ? UNP Q5DYV8 ? ? 'expression tag' -14 8 1 4LDN SER A 9 ? UNP Q5DYV8 ? ? 'expression tag' -13 9 1 4LDN GLY A 10 ? UNP Q5DYV8 ? ? 'expression tag' -12 10 1 4LDN VAL A 11 ? UNP Q5DYV8 ? ? 'expression tag' -11 11 1 4LDN ASP A 12 ? UNP Q5DYV8 ? ? 'expression tag' -10 12 1 4LDN LEU A 13 ? UNP Q5DYV8 ? ? 'expression tag' -9 13 1 4LDN GLY A 14 ? UNP Q5DYV8 ? ? 'expression tag' -8 14 1 4LDN THR A 15 ? UNP Q5DYV8 ? ? 'expression tag' -7 15 1 4LDN GLU A 16 ? UNP Q5DYV8 ? ? 'expression tag' -6 16 1 4LDN ASN A 17 ? UNP Q5DYV8 ? ? 'expression tag' -5 17 1 4LDN LEU A 18 ? UNP Q5DYV8 ? ? 'expression tag' -4 18 1 4LDN TYR A 19 ? UNP Q5DYV8 ? ? 'expression tag' -3 19 1 4LDN PHE A 20 ? UNP Q5DYV8 ? ? 'expression tag' -2 20 1 4LDN GLN A 21 ? UNP Q5DYV8 ? ? 'expression tag' -1 21 1 4LDN SER A 22 ? UNP Q5DYV8 ? ? 'expression tag' 0 22 # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details hexameric _pdbx_struct_assembly.oligomeric_count 6 # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 28020 ? 1 MORE -82 ? 1 'SSA (A^2)' 51840 ? # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3,4,5,6 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 2 'crystal symmetry operation' 2_555 -y,x-y,z -0.5000000000 -0.8660254038 0.0000000000 0.0000000000 0.8660254038 -0.5000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 3 'crystal symmetry operation' 3_555 -x+y,-x,z -0.5000000000 0.8660254038 0.0000000000 0.0000000000 -0.8660254038 -0.5000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 4 'crystal symmetry operation' 4_556 y,x,-z+1 -0.5000000000 0.8660254038 0.0000000000 0.0000000000 0.8660254038 0.5000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 45.3390000000 5 'crystal symmetry operation' 5_556 x-y,-y,-z+1 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 45.3390000000 6 'crystal symmetry operation' 6_556 -x,-x+y,-z+1 -0.5000000000 -0.8660254038 0.0000000000 0.0000000000 -0.8660254038 0.5000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 45.3390000000 # _struct_biol.id 1 _struct_biol.details 'probable hexamer' # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 ASN A 17 ? SER A 22 ? ASN A -5 SER A 0 1 ? 6 HELX_P HELX_P2 2 ASP A 44 ? LEU A 56 ? ASP A 22 LEU A 34 1 ? 13 HELX_P HELX_P3 3 ASP A 64 ? MSE A 68 ? ASP A 42 MSE A 46 5 ? 5 HELX_P HELX_P4 4 GLY A 88 ? THR A 101 ? GLY A 66 THR A 79 1 ? 14 HELX_P HELX_P5 5 LYS A 137 ? PHE A 143 ? LYS A 115 PHE A 121 1 ? 7 HELX_P HELX_P6 6 ASN A 153 ? THR A 166 ? ASN A 131 THR A 144 1 ? 14 HELX_P HELX_P7 7 GLU A 187 ? TYR A 196 ? GLU A 165 TYR A 174 1 ? 10 HELX_P HELX_P8 8 GLU A 204 ? HIS A 216 ? GLU A 182 HIS A 194 1 ? 13 HELX_P HELX_P9 9 THR A 236 ? LEU A 258 ? THR A 214 LEU A 236 1 ? 23 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role covale1 covale both ? A SER 22 C ? ? ? 1_555 A MSE 23 N ? ? A SER 0 A MSE 1 1_555 ? ? ? ? ? ? ? 1.337 ? ? covale2 covale both ? A MSE 23 C ? ? ? 1_555 A SER 24 N ? ? A MSE 1 A SER 2 1_555 ? ? ? ? ? ? ? 1.330 ? ? covale3 covale both ? A LEU 40 C ? ? ? 1_555 A MSE 41 N ? ? A LEU 18 A MSE 19 1_555 ? ? ? ? ? ? ? 1.329 ? ? covale4 covale both ? A MSE 41 C ? ? ? 1_555 A PRO 42 N ? ? A MSE 19 A PRO 20 1_555 ? ? ? ? ? ? ? 1.350 ? ? covale5 covale both ? A GLY 67 C ? ? ? 1_555 A MSE 68 N ? ? A GLY 45 A MSE 46 1_555 ? ? ? ? ? ? ? 1.332 ? ? covale6 covale both ? A MSE 68 C ? ? ? 1_555 A LEU 69 N ? ? A MSE 46 A LEU 47 1_555 ? ? ? ? ? ? ? 1.319 ? ? covale7 covale both ? A VAL 82 C ? ? ? 1_555 A MSE 83 N ? ? A VAL 60 A MSE 61 1_555 ? ? ? ? ? ? ? 1.326 ? ? covale8 covale both ? A MSE 83 C ? ? ? 1_555 A GLY 84 N ? ? A MSE 61 A GLY 62 1_555 ? ? ? ? ? ? ? 1.333 ? ? covale9 covale both ? A GLY 86 C ? ? ? 1_555 A MSE 87 N ? ? A GLY 64 A MSE 65 1_555 ? ? ? ? ? ? ? 1.313 ? ? covale10 covale both ? A MSE 87 C ? ? ? 1_555 A GLY 88 N ? ? A MSE 65 A GLY 66 1_555 ? ? ? ? ? ? ? 1.316 ? ? covale11 covale both ? A LEU 99 C ? ? ? 1_555 A MSE 100 N ? ? A LEU 77 A MSE 78 1_555 ? ? ? ? ? ? ? 1.327 ? ? covale12 covale both ? A MSE 100 C ? ? ? 1_555 A THR 101 N ? ? A MSE 78 A THR 79 1_555 ? ? ? ? ? ? ? 1.323 ? ? covale13 covale both ? A LYS 137 C ? ? ? 1_555 A MSE 138 N ? ? A LYS 115 A MSE 116 1_555 ? ? ? ? ? ? ? 1.336 ? ? covale14 covale both ? A MSE 138 C ? ? ? 1_555 A ASN 139 N ? ? A MSE 116 A ASN 117 1_555 ? ? ? ? ? ? ? 1.323 ? ? covale15 covale both ? A ASN 155 C ? ? ? 1_555 A MSE 156 N ? ? A ASN 133 A MSE 134 1_555 ? ? ? ? ? ? ? 1.340 ? ? covale16 covale both ? A MSE 156 C ? ? ? 1_555 A LEU 157 N ? ? A MSE 134 A LEU 135 1_555 ? ? ? ? ? ? ? 1.324 ? ? covale17 covale both ? A ASP 191 C ? ? ? 1_555 A MSE 192 N ? ? A ASP 169 A MSE 170 1_555 ? ? ? ? ? ? ? 1.328 ? ? covale18 covale both ? A MSE 192 C ? ? ? 1_555 A MSE 193 N ? ? A MSE 170 A MSE 171 1_555 ? ? ? ? ? ? ? 1.329 ? ? covale19 covale both ? A MSE 193 C ? ? ? 1_555 A ALA 194 N ? ? A MSE 171 A ALA 172 1_555 ? ? ? ? ? ? ? 1.336 ? ? covale20 covale both ? A GLU 202 C ? ? ? 1_555 A MSE 203 N ? ? A GLU 180 A MSE 181 1_555 ? ? ? ? ? ? ? 1.341 ? ? covale21 covale both ? A MSE 203 C ? ? ? 1_555 A GLU 204 N ? ? A MSE 181 A GLU 182 1_555 ? ? ? ? ? ? ? 1.336 ? ? covale22 covale both ? A GLU 246 C ? ? ? 1_555 A MSE 247 N ? ? A GLU 224 A MSE 225 1_555 ? ? ? ? ? ? ? 1.340 ? ? covale23 covale both ? A MSE 247 C ? ? ? 1_555 A ILE 248 N ? ? A MSE 225 A ILE 226 1_555 ? ? ? ? ? ? ? 1.345 ? ? # _struct_conn_type.id covale _struct_conn_type.criteria ? _struct_conn_type.reference ? # loop_ _pdbx_modification_feature.ordinal _pdbx_modification_feature.label_comp_id _pdbx_modification_feature.label_asym_id _pdbx_modification_feature.label_seq_id _pdbx_modification_feature.label_alt_id _pdbx_modification_feature.modified_residue_label_comp_id _pdbx_modification_feature.modified_residue_label_asym_id _pdbx_modification_feature.modified_residue_label_seq_id _pdbx_modification_feature.modified_residue_label_alt_id _pdbx_modification_feature.auth_comp_id _pdbx_modification_feature.auth_asym_id _pdbx_modification_feature.auth_seq_id _pdbx_modification_feature.PDB_ins_code _pdbx_modification_feature.symmetry _pdbx_modification_feature.modified_residue_auth_comp_id _pdbx_modification_feature.modified_residue_auth_asym_id _pdbx_modification_feature.modified_residue_auth_seq_id _pdbx_modification_feature.modified_residue_PDB_ins_code _pdbx_modification_feature.modified_residue_symmetry _pdbx_modification_feature.comp_id_linking_atom _pdbx_modification_feature.modified_residue_id_linking_atom _pdbx_modification_feature.modified_residue_id _pdbx_modification_feature.ref_pcm_id _pdbx_modification_feature.ref_comp_id _pdbx_modification_feature.type _pdbx_modification_feature.category 1 MSE A 23 ? . . . . MSE A 1 ? 1_555 . . . . . . . MET 1 MSE Selenomethionine 'Named protein modification' 2 MSE A 41 ? . . . . MSE A 19 ? 1_555 . . . . . . . MET 1 MSE Selenomethionine 'Named protein modification' 3 MSE A 68 ? . . . . MSE A 46 ? 1_555 . . . . . . . MET 1 MSE Selenomethionine 'Named protein modification' 4 MSE A 83 ? . . . . MSE A 61 ? 1_555 . . . . . . . MET 1 MSE Selenomethionine 'Named protein modification' 5 MSE A 87 ? . . . . MSE A 65 ? 1_555 . . . . . . . MET 1 MSE Selenomethionine 'Named protein modification' 6 MSE A 100 ? . . . . MSE A 78 ? 1_555 . . . . . . . MET 1 MSE Selenomethionine 'Named protein modification' 7 MSE A 138 ? . . . . MSE A 116 ? 1_555 . . . . . . . MET 1 MSE Selenomethionine 'Named protein modification' 8 MSE A 156 ? . . . . MSE A 134 ? 1_555 . . . . . . . MET 1 MSE Selenomethionine 'Named protein modification' 9 MSE A 192 ? . . . . MSE A 170 ? 1_555 . . . . . . . MET 1 MSE Selenomethionine 'Named protein modification' 10 MSE A 193 ? . . . . MSE A 171 ? 1_555 . . . . . . . MET 1 MSE Selenomethionine 'Named protein modification' 11 MSE A 203 ? . . . . MSE A 181 ? 1_555 . . . . . . . MET 1 MSE Selenomethionine 'Named protein modification' 12 MSE A 247 ? . . . . MSE A 225 ? 1_555 . . . . . . . MET 1 MSE Selenomethionine 'Named protein modification' # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details A ? 10 ? B ? 7 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel A 2 3 ? anti-parallel A 3 4 ? parallel A 4 5 ? parallel A 5 6 ? anti-parallel A 6 7 ? parallel A 7 8 ? parallel A 8 9 ? anti-parallel A 9 10 ? anti-parallel B 1 2 ? anti-parallel B 2 3 ? anti-parallel B 3 4 ? parallel B 4 5 ? parallel B 5 6 ? parallel B 6 7 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 GLU A 57 ? THR A 63 ? GLU A 35 THR A 41 A 2 GLY A 70 ? PHE A 75 ? GLY A 48 PHE A 53 A 3 ARG A 78 ? MSE A 83 ? ARG A 56 MSE A 61 A 4 THR A 38 ? MSE A 41 ? THR A 16 MSE A 19 A 5 ASN A 107 ? ALA A 116 ? ASN A 85 ALA A 94 A 6 GLY A 200 ? GLU A 202 ? GLY A 178 GLU A 180 A 7 TYR A 171 ? SER A 178 ? TYR A 149 SER A 156 A 8 LEU A 126 ? THR A 134 ? LEU A 104 THR A 112 A 9 ASN A 218 ? HIS A 228 ? ASN A 196 HIS A 206 A 10 GLU A 233 ? HIS A 234 ? GLU A 211 HIS A 212 B 1 GLU A 57 ? THR A 63 ? GLU A 35 THR A 41 B 2 GLY A 70 ? PHE A 75 ? GLY A 48 PHE A 53 B 3 ARG A 78 ? MSE A 83 ? ARG A 56 MSE A 61 B 4 THR A 38 ? MSE A 41 ? THR A 16 MSE A 19 B 5 ASN A 107 ? ALA A 116 ? ASN A 85 ALA A 94 B 6 ASN A 218 ? HIS A 228 ? ASN A 196 HIS A 206 B 7 GLU A 233 ? HIS A 234 ? GLU A 211 HIS A 212 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 N GLU A 57 ? N GLU A 35 O GLU A 74 ? O GLU A 52 A 2 3 N GLY A 73 ? N GLY A 51 O ILE A 80 ? O ILE A 58 A 3 4 O SER A 81 ? O SER A 59 N LEU A 40 ? N LEU A 18 A 4 5 N MSE A 41 ? N MSE A 19 O ILE A 109 ? O ILE A 87 A 5 6 N GLY A 115 ? N GLY A 93 O VAL A 201 ? O VAL A 179 A 6 7 O GLU A 202 ? O GLU A 180 N PHE A 177 ? N PHE A 155 A 7 8 O SER A 178 ? O SER A 156 N SER A 133 ? N SER A 111 A 8 9 N ILE A 127 ? N ILE A 105 O CYS A 223 ? O CYS A 201 A 9 10 N HIS A 228 ? N HIS A 206 O GLU A 233 ? O GLU A 211 B 1 2 N GLU A 57 ? N GLU A 35 O GLU A 74 ? O GLU A 52 B 2 3 N GLY A 73 ? N GLY A 51 O ILE A 80 ? O ILE A 58 B 3 4 O SER A 81 ? O SER A 59 N LEU A 40 ? N LEU A 18 B 4 5 N MSE A 41 ? N MSE A 19 O ILE A 109 ? O ILE A 87 B 5 6 N GLY A 112 ? N GLY A 90 O LEU A 222 ? O LEU A 200 B 6 7 N HIS A 228 ? N HIS A 206 O GLU A 233 ? O GLU A 211 # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software A PO4 301 ? 6 'BINDING SITE FOR RESIDUE PO4 A 301' AC2 Software A PO4 302 ? 4 'BINDING SITE FOR RESIDUE PO4 A 302' AC3 Software A EDO 303 ? 5 'BINDING SITE FOR RESIDUE EDO A 303' AC4 Software A EDO 304 ? 6 'BINDING SITE FOR RESIDUE EDO A 304' AC5 Software A EDO 305 ? 4 'BINDING SITE FOR RESIDUE EDO A 305' AC6 Software A EDO 306 ? 5 'BINDING SITE FOR RESIDUE EDO A 306' AC7 Software A EDO 307 ? 4 'BINDING SITE FOR RESIDUE EDO A 307' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 6 GLY A 43 ? GLY A 21 . ? 1_555 ? 2 AC1 6 ARG A 47 ? ARG A 25 . ? 1_555 ? 3 AC1 6 ARG A 66 ? ARG A 44 . ? 4_556 ? 4 AC1 6 ARG A 110 ? ARG A 88 . ? 1_555 ? 5 AC1 6 SER A 113 ? SER A 91 . ? 1_555 ? 6 AC1 6 HOH I . ? HOH A 404 . ? 1_555 ? 7 AC2 4 HIS A 232 ? HIS A 210 . ? 1_555 ? 8 AC2 4 HIS A 234 ? HIS A 212 . ? 1_555 ? 9 AC2 4 HOH I . ? HOH A 478 . ? 1_556 ? 10 AC2 4 HOH I . ? HOH A 537 . ? 1_555 ? 11 AC3 5 ASN A 139 ? ASN A 117 . ? 1_555 ? 12 AC3 5 ARG A 142 ? ARG A 120 . ? 1_555 ? 13 AC3 5 PHE A 148 ? PHE A 126 . ? 1_555 ? 14 AC3 5 TYR A 196 ? TYR A 174 . ? 5_556 ? 15 AC3 5 SER A 210 ? SER A 188 . ? 1_555 ? 16 AC4 6 TYR A 55 ? TYR A 33 . ? 1_555 ? 17 AC4 6 TYR A 55 ? TYR A 33 . ? 12_556 ? 18 AC4 6 HIS A 245 ? HIS A 223 . ? 1_555 ? 19 AC4 6 HIS A 245 ? HIS A 223 . ? 12_556 ? 20 AC4 6 HOH I . ? HOH A 405 . ? 1_555 ? 21 AC4 6 HOH I . ? HOH A 405 . ? 12_556 ? 22 AC5 4 HIS A 118 ? HIS A 96 . ? 1_555 ? 23 AC5 4 ALA A 194 ? ALA A 172 . ? 1_555 ? 24 AC5 4 ILE A 198 ? ILE A 176 . ? 1_555 ? 25 AC5 4 HOH I . ? HOH A 455 . ? 1_555 ? 26 AC6 5 ARG A 66 ? ARG A 44 . ? 4_556 ? 27 AC6 5 ARG A 66 ? ARG A 44 . ? 1_555 ? 28 AC6 5 MSE A 68 ? MSE A 46 . ? 4_556 ? 29 AC6 5 MSE A 68 ? MSE A 46 . ? 1_555 ? 30 AC6 5 HOH I . ? HOH A 482 . ? 1_555 ? 31 AC7 4 THR A 167 ? THR A 145 . ? 1_555 ? 32 AC7 4 ASN A 249 ? ASN A 227 . ? 1_555 ? 33 AC7 4 ASP A 253 ? ASP A 231 . ? 1_555 ? 34 AC7 4 HOH I . ? HOH A 503 . ? 1_555 ? # _pdbx_entry_details.entry_id 4LDN _pdbx_entry_details.compound_details ? _pdbx_entry_details.source_details ? _pdbx_entry_details.nonpolymer_details ? _pdbx_entry_details.sequence_details ? _pdbx_entry_details.has_ligand_of_interest ? _pdbx_entry_details.has_protein_modification Y # _pdbx_validate_close_contact.id 1 _pdbx_validate_close_contact.PDB_model_num 1 _pdbx_validate_close_contact.auth_atom_id_1 OD2 _pdbx_validate_close_contact.auth_asym_id_1 A _pdbx_validate_close_contact.auth_comp_id_1 ASP _pdbx_validate_close_contact.auth_seq_id_1 123 _pdbx_validate_close_contact.PDB_ins_code_1 ? _pdbx_validate_close_contact.label_alt_id_1 ? _pdbx_validate_close_contact.auth_atom_id_2 O _pdbx_validate_close_contact.auth_asym_id_2 A _pdbx_validate_close_contact.auth_comp_id_2 HOH _pdbx_validate_close_contact.auth_seq_id_2 552 _pdbx_validate_close_contact.PDB_ins_code_2 ? _pdbx_validate_close_contact.label_alt_id_2 ? _pdbx_validate_close_contact.dist 2.19 # _pdbx_validate_symm_contact.id 1 _pdbx_validate_symm_contact.PDB_model_num 1 _pdbx_validate_symm_contact.auth_atom_id_1 O _pdbx_validate_symm_contact.auth_asym_id_1 A _pdbx_validate_symm_contact.auth_comp_id_1 HOH _pdbx_validate_symm_contact.auth_seq_id_1 517 _pdbx_validate_symm_contact.PDB_ins_code_1 ? _pdbx_validate_symm_contact.label_alt_id_1 ? _pdbx_validate_symm_contact.site_symmetry_1 1_555 _pdbx_validate_symm_contact.auth_atom_id_2 O _pdbx_validate_symm_contact.auth_asym_id_2 A _pdbx_validate_symm_contact.auth_comp_id_2 HOH _pdbx_validate_symm_contact.auth_seq_id_2 517 _pdbx_validate_symm_contact.PDB_ins_code_2 ? _pdbx_validate_symm_contact.label_alt_id_2 ? _pdbx_validate_symm_contact.site_symmetry_2 4_556 _pdbx_validate_symm_contact.dist 2.10 # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 NE A ARG 25 ? B CZ A ARG 25 ? B NH1 A ARG 25 ? B 123.63 120.30 3.33 0.50 N 2 1 NE A ARG 25 ? B CZ A ARG 25 ? B NH2 A ARG 25 ? B 116.14 120.30 -4.16 0.50 N 3 1 CB A ASP 158 ? ? CG A ASP 158 ? ? OD2 A ASP 158 ? ? 112.11 118.30 -6.19 0.90 N # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 ASP A 42 ? ? -152.96 20.44 2 1 ARG A 44 ? ? 56.73 19.68 3 1 THR A 79 ? ? -102.85 -86.25 4 1 LYS A 102 ? ? 82.09 -4.91 5 1 GLU A 180 ? ? -150.94 -157.30 # _pdbx_SG_project.id 1 _pdbx_SG_project.project_name PSI:Biology _pdbx_SG_project.full_name_of_center 'New York Structural Genomics Research Consortium' _pdbx_SG_project.initial_of_center NYSGRC # loop_ _pdbx_struct_mod_residue.id _pdbx_struct_mod_residue.label_asym_id _pdbx_struct_mod_residue.label_comp_id _pdbx_struct_mod_residue.label_seq_id _pdbx_struct_mod_residue.auth_asym_id _pdbx_struct_mod_residue.auth_comp_id _pdbx_struct_mod_residue.auth_seq_id _pdbx_struct_mod_residue.PDB_ins_code _pdbx_struct_mod_residue.parent_comp_id _pdbx_struct_mod_residue.details 1 A MSE 23 A MSE 1 ? MET SELENOMETHIONINE 2 A MSE 41 A MSE 19 ? MET SELENOMETHIONINE 3 A MSE 68 A MSE 46 ? MET SELENOMETHIONINE 4 A MSE 83 A MSE 61 ? MET SELENOMETHIONINE 5 A MSE 87 A MSE 65 ? MET SELENOMETHIONINE 6 A MSE 100 A MSE 78 ? MET SELENOMETHIONINE 7 A MSE 138 A MSE 116 ? MET SELENOMETHIONINE 8 A MSE 156 A MSE 134 ? MET SELENOMETHIONINE 9 A MSE 192 A MSE 170 ? MET SELENOMETHIONINE 10 A MSE 193 A MSE 171 ? MET SELENOMETHIONINE 11 A MSE 203 A MSE 181 ? MET SELENOMETHIONINE 12 A MSE 247 A MSE 225 ? MET SELENOMETHIONINE # loop_ _pdbx_struct_special_symmetry.id _pdbx_struct_special_symmetry.PDB_model_num _pdbx_struct_special_symmetry.auth_asym_id _pdbx_struct_special_symmetry.auth_comp_id _pdbx_struct_special_symmetry.auth_seq_id _pdbx_struct_special_symmetry.PDB_ins_code _pdbx_struct_special_symmetry.label_asym_id _pdbx_struct_special_symmetry.label_comp_id _pdbx_struct_special_symmetry.label_seq_id 1 1 A EDO 306 ? G EDO . 2 1 A HOH 432 ? I HOH . 3 1 A HOH 457 ? I HOH . 4 1 A HOH 477 ? I HOH . 5 1 A HOH 533 ? I HOH . # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A MSE -21 ? A MSE 1 2 1 Y 1 A HIS -20 ? A HIS 2 3 1 Y 1 A HIS -19 ? A HIS 3 4 1 Y 1 A HIS -18 ? A HIS 4 5 1 Y 1 A HIS -17 ? A HIS 5 6 1 Y 1 A HIS -16 ? A HIS 6 7 1 Y 1 A HIS -15 ? A HIS 7 8 1 Y 1 A SER -14 ? A SER 8 9 1 Y 1 A SER -13 ? A SER 9 10 1 Y 1 A GLY -12 ? A GLY 10 11 1 Y 1 A VAL -11 ? A VAL 11 12 1 Y 1 A ASP -10 ? A ASP 12 13 1 Y 1 A LEU -9 ? A LEU 13 14 1 Y 1 A GLY -8 ? A GLY 14 15 1 Y 1 A THR -7 ? A THR 15 16 1 Y 1 A GLU -6 ? A GLU 16 17 1 Y 1 A GLU 239 ? A GLU 261 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal ALA N N N N 1 ALA CA C N S 2 ALA C C N N 3 ALA O O N N 4 ALA CB C N N 5 ALA OXT O N N 6 ALA H H N N 7 ALA H2 H N N 8 ALA HA H N N 9 ALA HB1 H N N 10 ALA HB2 H N N 11 ALA HB3 H N N 12 ALA HXT H N N 13 ARG N N N N 14 ARG CA C N S 15 ARG C C N N 16 ARG O O N N 17 ARG CB C N N 18 ARG CG C N N 19 ARG CD C N N 20 ARG NE N N N 21 ARG CZ C N N 22 ARG NH1 N N N 23 ARG NH2 N N N 24 ARG OXT O N N 25 ARG H H N N 26 ARG H2 H N N 27 ARG HA H N N 28 ARG HB2 H N N 29 ARG HB3 H N N 30 ARG HG2 H N N 31 ARG HG3 H N N 32 ARG HD2 H N N 33 ARG HD3 H N N 34 ARG HE H N N 35 ARG HH11 H N N 36 ARG HH12 H N N 37 ARG HH21 H N N 38 ARG HH22 H N N 39 ARG HXT H N N 40 ASN N N N N 41 ASN CA C N S 42 ASN C C N N 43 ASN O O N N 44 ASN CB C N N 45 ASN CG C N N 46 ASN OD1 O N N 47 ASN ND2 N N N 48 ASN OXT O N N 49 ASN H H N N 50 ASN H2 H N N 51 ASN HA H N N 52 ASN HB2 H N N 53 ASN HB3 H N N 54 ASN HD21 H N N 55 ASN HD22 H N N 56 ASN HXT H N N 57 ASP N N N N 58 ASP CA C N S 59 ASP C C N N 60 ASP O O N N 61 ASP CB C N N 62 ASP CG C N N 63 ASP OD1 O N N 64 ASP OD2 O N N 65 ASP OXT O N N 66 ASP H H N N 67 ASP H2 H N N 68 ASP HA H N N 69 ASP HB2 H N N 70 ASP HB3 H N N 71 ASP HD2 H N N 72 ASP HXT H N N 73 CYS N N N N 74 CYS CA C N R 75 CYS C C N N 76 CYS O O N N 77 CYS CB C N N 78 CYS SG S N N 79 CYS OXT O N N 80 CYS H H N N 81 CYS H2 H N N 82 CYS HA H N N 83 CYS HB2 H N N 84 CYS HB3 H N N 85 CYS HG H N N 86 CYS HXT H N N 87 EDO C1 C N N 88 EDO O1 O N N 89 EDO C2 C N N 90 EDO O2 O N N 91 EDO H11 H N N 92 EDO H12 H N N 93 EDO HO1 H N N 94 EDO H21 H N N 95 EDO H22 H N N 96 EDO HO2 H N N 97 GLN N N N N 98 GLN CA C N S 99 GLN C C N N 100 GLN O O N N 101 GLN CB C N N 102 GLN CG C N N 103 GLN CD C N N 104 GLN OE1 O N N 105 GLN NE2 N N N 106 GLN OXT O N N 107 GLN H H N N 108 GLN H2 H N N 109 GLN HA H N N 110 GLN HB2 H N N 111 GLN HB3 H N N 112 GLN HG2 H N N 113 GLN HG3 H N N 114 GLN HE21 H N N 115 GLN HE22 H N N 116 GLN HXT H N N 117 GLU N N N N 118 GLU CA C N S 119 GLU C C N N 120 GLU O O N N 121 GLU CB C N N 122 GLU CG C N N 123 GLU CD C N N 124 GLU OE1 O N N 125 GLU OE2 O N N 126 GLU OXT O N N 127 GLU H H N N 128 GLU H2 H N N 129 GLU HA H N N 130 GLU HB2 H N N 131 GLU HB3 H N N 132 GLU HG2 H N N 133 GLU HG3 H N N 134 GLU HE2 H N N 135 GLU HXT H N N 136 GLY N N N N 137 GLY CA C N N 138 GLY C C N N 139 GLY O O N N 140 GLY OXT O N N 141 GLY H H N N 142 GLY H2 H N N 143 GLY HA2 H N N 144 GLY HA3 H N N 145 GLY HXT H N N 146 HIS N N N N 147 HIS CA C N S 148 HIS C C N N 149 HIS O O N N 150 HIS CB C N N 151 HIS CG C Y N 152 HIS ND1 N Y N 153 HIS CD2 C Y N 154 HIS CE1 C Y N 155 HIS NE2 N Y N 156 HIS OXT O N N 157 HIS H H N N 158 HIS H2 H N N 159 HIS HA H N N 160 HIS HB2 H N N 161 HIS HB3 H N N 162 HIS HD1 H N N 163 HIS HD2 H N N 164 HIS HE1 H N N 165 HIS HE2 H N N 166 HIS HXT H N N 167 HOH O O N N 168 HOH H1 H N N 169 HOH H2 H N N 170 ILE N N N N 171 ILE CA C N S 172 ILE C C N N 173 ILE O O N N 174 ILE CB C N S 175 ILE CG1 C N N 176 ILE CG2 C N N 177 ILE CD1 C N N 178 ILE OXT O N N 179 ILE H H N N 180 ILE H2 H N N 181 ILE HA H N N 182 ILE HB H N N 183 ILE HG12 H N N 184 ILE HG13 H N N 185 ILE HG21 H N N 186 ILE HG22 H N N 187 ILE HG23 H N N 188 ILE HD11 H N N 189 ILE HD12 H N N 190 ILE HD13 H N N 191 ILE HXT H N N 192 LEU N N N N 193 LEU CA C N S 194 LEU C C N N 195 LEU O O N N 196 LEU CB C N N 197 LEU CG C N N 198 LEU CD1 C N N 199 LEU CD2 C N N 200 LEU OXT O N N 201 LEU H H N N 202 LEU H2 H N N 203 LEU HA H N N 204 LEU HB2 H N N 205 LEU HB3 H N N 206 LEU HG H N N 207 LEU HD11 H N N 208 LEU HD12 H N N 209 LEU HD13 H N N 210 LEU HD21 H N N 211 LEU HD22 H N N 212 LEU HD23 H N N 213 LEU HXT H N N 214 LYS N N N N 215 LYS CA C N S 216 LYS C C N N 217 LYS O O N N 218 LYS CB C N N 219 LYS CG C N N 220 LYS CD C N N 221 LYS CE C N N 222 LYS NZ N N N 223 LYS OXT O N N 224 LYS H H N N 225 LYS H2 H N N 226 LYS HA H N N 227 LYS HB2 H N N 228 LYS HB3 H N N 229 LYS HG2 H N N 230 LYS HG3 H N N 231 LYS HD2 H N N 232 LYS HD3 H N N 233 LYS HE2 H N N 234 LYS HE3 H N N 235 LYS HZ1 H N N 236 LYS HZ2 H N N 237 LYS HZ3 H N N 238 LYS HXT H N N 239 MSE N N N N 240 MSE CA C N S 241 MSE C C N N 242 MSE O O N N 243 MSE OXT O N N 244 MSE CB C N N 245 MSE CG C N N 246 MSE SE SE N N 247 MSE CE C N N 248 MSE H H N N 249 MSE H2 H N N 250 MSE HA H N N 251 MSE HXT H N N 252 MSE HB2 H N N 253 MSE HB3 H N N 254 MSE HG2 H N N 255 MSE HG3 H N N 256 MSE HE1 H N N 257 MSE HE2 H N N 258 MSE HE3 H N N 259 PHE N N N N 260 PHE CA C N S 261 PHE C C N N 262 PHE O O N N 263 PHE CB C N N 264 PHE CG C Y N 265 PHE CD1 C Y N 266 PHE CD2 C Y N 267 PHE CE1 C Y N 268 PHE CE2 C Y N 269 PHE CZ C Y N 270 PHE OXT O N N 271 PHE H H N N 272 PHE H2 H N N 273 PHE HA H N N 274 PHE HB2 H N N 275 PHE HB3 H N N 276 PHE HD1 H N N 277 PHE HD2 H N N 278 PHE HE1 H N N 279 PHE HE2 H N N 280 PHE HZ H N N 281 PHE HXT H N N 282 PO4 P P N N 283 PO4 O1 O N N 284 PO4 O2 O N N 285 PO4 O3 O N N 286 PO4 O4 O N N 287 PRO N N N N 288 PRO CA C N S 289 PRO C C N N 290 PRO O O N N 291 PRO CB C N N 292 PRO CG C N N 293 PRO CD C N N 294 PRO OXT O N N 295 PRO H H N N 296 PRO HA H N N 297 PRO HB2 H N N 298 PRO HB3 H N N 299 PRO HG2 H N N 300 PRO HG3 H N N 301 PRO HD2 H N N 302 PRO HD3 H N N 303 PRO HXT H N N 304 SER N N N N 305 SER CA C N S 306 SER C C N N 307 SER O O N N 308 SER CB C N N 309 SER OG O N N 310 SER OXT O N N 311 SER H H N N 312 SER H2 H N N 313 SER HA H N N 314 SER HB2 H N N 315 SER HB3 H N N 316 SER HG H N N 317 SER HXT H N N 318 THR N N N N 319 THR CA C N S 320 THR C C N N 321 THR O O N N 322 THR CB C N R 323 THR OG1 O N N 324 THR CG2 C N N 325 THR OXT O N N 326 THR H H N N 327 THR H2 H N N 328 THR HA H N N 329 THR HB H N N 330 THR HG1 H N N 331 THR HG21 H N N 332 THR HG22 H N N 333 THR HG23 H N N 334 THR HXT H N N 335 TYR N N N N 336 TYR CA C N S 337 TYR C C N N 338 TYR O O N N 339 TYR CB C N N 340 TYR CG C Y N 341 TYR CD1 C Y N 342 TYR CD2 C Y N 343 TYR CE1 C Y N 344 TYR CE2 C Y N 345 TYR CZ C Y N 346 TYR OH O N N 347 TYR OXT O N N 348 TYR H H N N 349 TYR H2 H N N 350 TYR HA H N N 351 TYR HB2 H N N 352 TYR HB3 H N N 353 TYR HD1 H N N 354 TYR HD2 H N N 355 TYR HE1 H N N 356 TYR HE2 H N N 357 TYR HH H N N 358 TYR HXT H N N 359 VAL N N N N 360 VAL CA C N S 361 VAL C C N N 362 VAL O O N N 363 VAL CB C N N 364 VAL CG1 C N N 365 VAL CG2 C N N 366 VAL OXT O N N 367 VAL H H N N 368 VAL H2 H N N 369 VAL HA H N N 370 VAL HB H N N 371 VAL HG11 H N N 372 VAL HG12 H N N 373 VAL HG13 H N N 374 VAL HG21 H N N 375 VAL HG22 H N N 376 VAL HG23 H N N 377 VAL HXT H N N 378 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal ALA N CA sing N N 1 ALA N H sing N N 2 ALA N H2 sing N N 3 ALA CA C sing N N 4 ALA CA CB sing N N 5 ALA CA HA sing N N 6 ALA C O doub N N 7 ALA C OXT sing N N 8 ALA CB HB1 sing N N 9 ALA CB HB2 sing N N 10 ALA CB HB3 sing N N 11 ALA OXT HXT sing N N 12 ARG N CA sing N N 13 ARG N H sing N N 14 ARG N H2 sing N N 15 ARG CA C sing N N 16 ARG CA CB sing N N 17 ARG CA HA sing N N 18 ARG C O doub N N 19 ARG C OXT sing N N 20 ARG CB CG sing N N 21 ARG CB HB2 sing N N 22 ARG CB HB3 sing N N 23 ARG CG CD sing N N 24 ARG CG HG2 sing N N 25 ARG CG HG3 sing N N 26 ARG CD NE sing N N 27 ARG CD HD2 sing N N 28 ARG CD HD3 sing N N 29 ARG NE CZ sing N N 30 ARG NE HE sing N N 31 ARG CZ NH1 sing N N 32 ARG CZ NH2 doub N N 33 ARG NH1 HH11 sing N N 34 ARG NH1 HH12 sing N N 35 ARG NH2 HH21 sing N N 36 ARG NH2 HH22 sing N N 37 ARG OXT HXT sing N N 38 ASN N CA sing N N 39 ASN N H sing N N 40 ASN N H2 sing N N 41 ASN CA C sing N N 42 ASN CA CB sing N N 43 ASN CA HA sing N N 44 ASN C O doub N N 45 ASN C OXT sing N N 46 ASN CB CG sing N N 47 ASN CB HB2 sing N N 48 ASN CB HB3 sing N N 49 ASN CG OD1 doub N N 50 ASN CG ND2 sing N N 51 ASN ND2 HD21 sing N N 52 ASN ND2 HD22 sing N N 53 ASN OXT HXT sing N N 54 ASP N CA sing N N 55 ASP N H sing N N 56 ASP N H2 sing N N 57 ASP CA C sing N N 58 ASP CA CB sing N N 59 ASP CA HA sing N N 60 ASP C O doub N N 61 ASP C OXT sing N N 62 ASP CB CG sing N N 63 ASP CB HB2 sing N N 64 ASP CB HB3 sing N N 65 ASP CG OD1 doub N N 66 ASP CG OD2 sing N N 67 ASP OD2 HD2 sing N N 68 ASP OXT HXT sing N N 69 CYS N CA sing N N 70 CYS N H sing N N 71 CYS N H2 sing N N 72 CYS CA C sing N N 73 CYS CA CB sing N N 74 CYS CA HA sing N N 75 CYS C O doub N N 76 CYS C OXT sing N N 77 CYS CB SG sing N N 78 CYS CB HB2 sing N N 79 CYS CB HB3 sing N N 80 CYS SG HG sing N N 81 CYS OXT HXT sing N N 82 EDO C1 O1 sing N N 83 EDO C1 C2 sing N N 84 EDO C1 H11 sing N N 85 EDO C1 H12 sing N N 86 EDO O1 HO1 sing N N 87 EDO C2 O2 sing N N 88 EDO C2 H21 sing N N 89 EDO C2 H22 sing N N 90 EDO O2 HO2 sing N N 91 GLN N CA sing N N 92 GLN N H sing N N 93 GLN N H2 sing N N 94 GLN CA C sing N N 95 GLN CA CB sing N N 96 GLN CA HA sing N N 97 GLN C O doub N N 98 GLN C OXT sing N N 99 GLN CB CG sing N N 100 GLN CB HB2 sing N N 101 GLN CB HB3 sing N N 102 GLN CG CD sing N N 103 GLN CG HG2 sing N N 104 GLN CG HG3 sing N N 105 GLN CD OE1 doub N N 106 GLN CD NE2 sing N N 107 GLN NE2 HE21 sing N N 108 GLN NE2 HE22 sing N N 109 GLN OXT HXT sing N N 110 GLU N CA sing N N 111 GLU N H sing N N 112 GLU N H2 sing N N 113 GLU CA C sing N N 114 GLU CA CB sing N N 115 GLU CA HA sing N N 116 GLU C O doub N N 117 GLU C OXT sing N N 118 GLU CB CG sing N N 119 GLU CB HB2 sing N N 120 GLU CB HB3 sing N N 121 GLU CG CD sing N N 122 GLU CG HG2 sing N N 123 GLU CG HG3 sing N N 124 GLU CD OE1 doub N N 125 GLU CD OE2 sing N N 126 GLU OE2 HE2 sing N N 127 GLU OXT HXT sing N N 128 GLY N CA sing N N 129 GLY N H sing N N 130 GLY N H2 sing N N 131 GLY CA C sing N N 132 GLY CA HA2 sing N N 133 GLY CA HA3 sing N N 134 GLY C O doub N N 135 GLY C OXT sing N N 136 GLY OXT HXT sing N N 137 HIS N CA sing N N 138 HIS N H sing N N 139 HIS N H2 sing N N 140 HIS CA C sing N N 141 HIS CA CB sing N N 142 HIS CA HA sing N N 143 HIS C O doub N N 144 HIS C OXT sing N N 145 HIS CB CG sing N N 146 HIS CB HB2 sing N N 147 HIS CB HB3 sing N N 148 HIS CG ND1 sing Y N 149 HIS CG CD2 doub Y N 150 HIS ND1 CE1 doub Y N 151 HIS ND1 HD1 sing N N 152 HIS CD2 NE2 sing Y N 153 HIS CD2 HD2 sing N N 154 HIS CE1 NE2 sing Y N 155 HIS CE1 HE1 sing N N 156 HIS NE2 HE2 sing N N 157 HIS OXT HXT sing N N 158 HOH O H1 sing N N 159 HOH O H2 sing N N 160 ILE N CA sing N N 161 ILE N H sing N N 162 ILE N H2 sing N N 163 ILE CA C sing N N 164 ILE CA CB sing N N 165 ILE CA HA sing N N 166 ILE C O doub N N 167 ILE C OXT sing N N 168 ILE CB CG1 sing N N 169 ILE CB CG2 sing N N 170 ILE CB HB sing N N 171 ILE CG1 CD1 sing N N 172 ILE CG1 HG12 sing N N 173 ILE CG1 HG13 sing N N 174 ILE CG2 HG21 sing N N 175 ILE CG2 HG22 sing N N 176 ILE CG2 HG23 sing N N 177 ILE CD1 HD11 sing N N 178 ILE CD1 HD12 sing N N 179 ILE CD1 HD13 sing N N 180 ILE OXT HXT sing N N 181 LEU N CA sing N N 182 LEU N H sing N N 183 LEU N H2 sing N N 184 LEU CA C sing N N 185 LEU CA CB sing N N 186 LEU CA HA sing N N 187 LEU C O doub N N 188 LEU C OXT sing N N 189 LEU CB CG sing N N 190 LEU CB HB2 sing N N 191 LEU CB HB3 sing N N 192 LEU CG CD1 sing N N 193 LEU CG CD2 sing N N 194 LEU CG HG sing N N 195 LEU CD1 HD11 sing N N 196 LEU CD1 HD12 sing N N 197 LEU CD1 HD13 sing N N 198 LEU CD2 HD21 sing N N 199 LEU CD2 HD22 sing N N 200 LEU CD2 HD23 sing N N 201 LEU OXT HXT sing N N 202 LYS N CA sing N N 203 LYS N H sing N N 204 LYS N H2 sing N N 205 LYS CA C sing N N 206 LYS CA CB sing N N 207 LYS CA HA sing N N 208 LYS C O doub N N 209 LYS C OXT sing N N 210 LYS CB CG sing N N 211 LYS CB HB2 sing N N 212 LYS CB HB3 sing N N 213 LYS CG CD sing N N 214 LYS CG HG2 sing N N 215 LYS CG HG3 sing N N 216 LYS CD CE sing N N 217 LYS CD HD2 sing N N 218 LYS CD HD3 sing N N 219 LYS CE NZ sing N N 220 LYS CE HE2 sing N N 221 LYS CE HE3 sing N N 222 LYS NZ HZ1 sing N N 223 LYS NZ HZ2 sing N N 224 LYS NZ HZ3 sing N N 225 LYS OXT HXT sing N N 226 MSE N CA sing N N 227 MSE N H sing N N 228 MSE N H2 sing N N 229 MSE CA C sing N N 230 MSE CA CB sing N N 231 MSE CA HA sing N N 232 MSE C O doub N N 233 MSE C OXT sing N N 234 MSE OXT HXT sing N N 235 MSE CB CG sing N N 236 MSE CB HB2 sing N N 237 MSE CB HB3 sing N N 238 MSE CG SE sing N N 239 MSE CG HG2 sing N N 240 MSE CG HG3 sing N N 241 MSE SE CE sing N N 242 MSE CE HE1 sing N N 243 MSE CE HE2 sing N N 244 MSE CE HE3 sing N N 245 PHE N CA sing N N 246 PHE N H sing N N 247 PHE N H2 sing N N 248 PHE CA C sing N N 249 PHE CA CB sing N N 250 PHE CA HA sing N N 251 PHE C O doub N N 252 PHE C OXT sing N N 253 PHE CB CG sing N N 254 PHE CB HB2 sing N N 255 PHE CB HB3 sing N N 256 PHE CG CD1 doub Y N 257 PHE CG CD2 sing Y N 258 PHE CD1 CE1 sing Y N 259 PHE CD1 HD1 sing N N 260 PHE CD2 CE2 doub Y N 261 PHE CD2 HD2 sing N N 262 PHE CE1 CZ doub Y N 263 PHE CE1 HE1 sing N N 264 PHE CE2 CZ sing Y N 265 PHE CE2 HE2 sing N N 266 PHE CZ HZ sing N N 267 PHE OXT HXT sing N N 268 PO4 P O1 doub N N 269 PO4 P O2 sing N N 270 PO4 P O3 sing N N 271 PO4 P O4 sing N N 272 PRO N CA sing N N 273 PRO N CD sing N N 274 PRO N H sing N N 275 PRO CA C sing N N 276 PRO CA CB sing N N 277 PRO CA HA sing N N 278 PRO C O doub N N 279 PRO C OXT sing N N 280 PRO CB CG sing N N 281 PRO CB HB2 sing N N 282 PRO CB HB3 sing N N 283 PRO CG CD sing N N 284 PRO CG HG2 sing N N 285 PRO CG HG3 sing N N 286 PRO CD HD2 sing N N 287 PRO CD HD3 sing N N 288 PRO OXT HXT sing N N 289 SER N CA sing N N 290 SER N H sing N N 291 SER N H2 sing N N 292 SER CA C sing N N 293 SER CA CB sing N N 294 SER CA HA sing N N 295 SER C O doub N N 296 SER C OXT sing N N 297 SER CB OG sing N N 298 SER CB HB2 sing N N 299 SER CB HB3 sing N N 300 SER OG HG sing N N 301 SER OXT HXT sing N N 302 THR N CA sing N N 303 THR N H sing N N 304 THR N H2 sing N N 305 THR CA C sing N N 306 THR CA CB sing N N 307 THR CA HA sing N N 308 THR C O doub N N 309 THR C OXT sing N N 310 THR CB OG1 sing N N 311 THR CB CG2 sing N N 312 THR CB HB sing N N 313 THR OG1 HG1 sing N N 314 THR CG2 HG21 sing N N 315 THR CG2 HG22 sing N N 316 THR CG2 HG23 sing N N 317 THR OXT HXT sing N N 318 TYR N CA sing N N 319 TYR N H sing N N 320 TYR N H2 sing N N 321 TYR CA C sing N N 322 TYR CA CB sing N N 323 TYR CA HA sing N N 324 TYR C O doub N N 325 TYR C OXT sing N N 326 TYR CB CG sing N N 327 TYR CB HB2 sing N N 328 TYR CB HB3 sing N N 329 TYR CG CD1 doub Y N 330 TYR CG CD2 sing Y N 331 TYR CD1 CE1 sing Y N 332 TYR CD1 HD1 sing N N 333 TYR CD2 CE2 doub Y N 334 TYR CD2 HD2 sing N N 335 TYR CE1 CZ doub Y N 336 TYR CE1 HE1 sing N N 337 TYR CE2 CZ sing Y N 338 TYR CE2 HE2 sing N N 339 TYR CZ OH sing N N 340 TYR OH HH sing N N 341 TYR OXT HXT sing N N 342 VAL N CA sing N N 343 VAL N H sing N N 344 VAL N H2 sing N N 345 VAL CA C sing N N 346 VAL CA CB sing N N 347 VAL CA HA sing N N 348 VAL C O doub N N 349 VAL C OXT sing N N 350 VAL CB CG1 sing N N 351 VAL CB CG2 sing N N 352 VAL CB HB sing N N 353 VAL CG1 HG11 sing N N 354 VAL CG1 HG12 sing N N 355 VAL CG1 HG13 sing N N 356 VAL CG2 HG21 sing N N 357 VAL CG2 HG22 sing N N 358 VAL CG2 HG23 sing N N 359 VAL OXT HXT sing N N 360 # _atom_sites.entry_id 4LDN _atom_sites.fract_transf_matrix[1][1] 0.006131 _atom_sites.fract_transf_matrix[1][2] 0.003540 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] -0.000000 _atom_sites.fract_transf_matrix[2][2] 0.007079 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] -0.000000 _atom_sites.fract_transf_matrix[3][3] 0.022056 _atom_sites.fract_transf_vector[1] 0.000000 _atom_sites.fract_transf_vector[2] 0.000000 _atom_sites.fract_transf_vector[3] 0.000000 # loop_ _atom_type.symbol C N O P S SE # loop_