HEADER DNA BINDING PROTEIN 25-JUN-13 4LDU TITLE CRYSTAL STRUCTURE OF THE DNA BINDING DOMAIN OF ARABIDOPSIS THALIANA TITLE 2 AUXIN RESPONSE FACTOR 5 COMPND MOL_ID: 1; COMPND 2 MOLECULE: AUXIN RESPONSE FACTOR 5; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: DNA BINDING DOMAIN, UNP RESIDUES 1-390; COMPND 5 SYNONYM: AUXIN-RESPONSIVE PROTEIN IAA24, TRANSCRIPTION FACTOR COMPND 6 MONOPTEROS; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ARABIDOPSIS THALIANA; SOURCE 3 ORGANISM_COMMON: MOUSE-EAR CRESS,THALE-CRESS; SOURCE 4 ORGANISM_TAXID: 3702; SOURCE 5 GENE: ARF5, AT1G19850, F6F9.10, IAA24, MP; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: ROSETTA DE3; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PTWIN1 KEYWDS TRANSCRIPTION FACTOR, DNA BINDING PROTEIN, NUCLEUS EXPDTA X-RAY DIFFRACTION AUTHOR D.R.BOER,A.FREIRE-RIOS,W.M.A.VAN DEN BERG,D.WEIJERS,M.COLL REVDAT 3 28-FEB-24 4LDU 1 SEQADV REVDAT 2 19-FEB-14 4LDU 1 AUTHOR REVDAT 1 12-FEB-14 4LDU 0 JRNL AUTH D.R.BOER,A.FREIRE-RIOS,W.A.VAN DEN BERG,T.SAAKI, JRNL AUTH 2 I.W.MANFIELD,S.KEPINSKI,I.LOPEZ-VIDRIEO,J.M.FRANCO-ZORRILLA, JRNL AUTH 3 S.C.DE VRIES,R.SOLANO,D.WEIJERS,M.COLL JRNL TITL STRUCTURAL BASIS FOR DNA BINDING SPECIFICITY BY THE JRNL TITL 2 AUXIN-DEPENDENT ARF TRANSCRIPTION FACTORS. JRNL REF CELL(CAMBRIDGE,MASS.) V. 156 577 2014 JRNL REFN ISSN 0092-8674 JRNL PMID 24485461 JRNL DOI 10.1016/J.CELL.2013.12.027 REMARK 2 REMARK 2 RESOLUTION. 2.15 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.7.0032 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.15 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 38.38 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 3 NUMBER OF REFLECTIONS : 22772 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.198 REMARK 3 R VALUE (WORKING SET) : 0.195 REMARK 3 FREE R VALUE : 0.252 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1211 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.15 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.21 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1690 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.89 REMARK 3 BIN R VALUE (WORKING SET) : 0.2620 REMARK 3 BIN FREE R VALUE SET COUNT : 83 REMARK 3 BIN FREE R VALUE : 0.3220 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2651 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 2 REMARK 3 SOLVENT ATOMS : 189 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 30.10 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 26.44 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -2.43000 REMARK 3 B22 (A**2) : -2.39000 REMARK 3 B33 (A**2) : 3.57000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -0.46000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.213 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.195 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.152 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 11.211 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.955 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.920 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2725 ; 0.013 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3705 ; 1.626 ; 1.948 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 334 ; 7.000 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 123 ;36.580 ;22.602 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 437 ;17.921 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 24 ;24.080 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 401 ; 0.108 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2099 ; 0.008 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1342 ; 1.748 ; 2.419 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1674 ; 2.737 ; 3.615 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1383 ; 2.047 ; 2.563 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 4157 ; 6.686 ;21.120 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 6 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 49 A 133 REMARK 3 ORIGIN FOR THE GROUP (A): 21.4796 6.7955 -21.9278 REMARK 3 T TENSOR REMARK 3 T11: 0.0182 T22: 0.0744 REMARK 3 T33: 0.0302 T12: -0.0036 REMARK 3 T13: -0.0151 T23: -0.0081 REMARK 3 L TENSOR REMARK 3 L11: 2.6503 L22: 7.4001 REMARK 3 L33: 1.6001 L12: -0.3427 REMARK 3 L13: 0.4477 L23: -1.1427 REMARK 3 S TENSOR REMARK 3 S11: -0.1287 S12: 0.1980 S13: 0.2080 REMARK 3 S21: -0.2187 S22: 0.0747 S23: 0.0747 REMARK 3 S31: -0.0644 S32: -0.1505 S33: 0.0540 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 134 A 151 REMARK 3 ORIGIN FOR THE GROUP (A): 13.0091 15.3077 -7.9806 REMARK 3 T TENSOR REMARK 3 T11: 1.2310 T22: 0.4205 REMARK 3 T33: 0.5590 T12: -0.0583 REMARK 3 T13: 0.4946 T23: -0.1876 REMARK 3 L TENSOR REMARK 3 L11: 6.0707 L22: 14.3008 REMARK 3 L33: 10.7899 L12: 2.1446 REMARK 3 L13: 0.5126 L23: 8.6636 REMARK 3 S TENSOR REMARK 3 S11: 0.8662 S12: -0.7185 S13: 0.2724 REMARK 3 S21: 3.1829 S22: -0.2958 S23: 0.9446 REMARK 3 S31: 0.2682 S32: -0.0006 S33: -0.5704 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 152 A 199 REMARK 3 ORIGIN FOR THE GROUP (A): 30.0902 -23.9774 -10.2848 REMARK 3 T TENSOR REMARK 3 T11: 0.1596 T22: 0.0937 REMARK 3 T33: 0.2316 T12: -0.0240 REMARK 3 T13: 0.0126 T23: 0.0593 REMARK 3 L TENSOR REMARK 3 L11: 5.8351 L22: 5.3543 REMARK 3 L33: 3.9084 L12: -1.4191 REMARK 3 L13: -1.0384 L23: -2.6052 REMARK 3 S TENSOR REMARK 3 S11: -0.0824 S12: -0.1818 S13: -0.6441 REMARK 3 S21: -0.0239 S22: -0.2292 S23: -0.2531 REMARK 3 S31: 0.5474 S32: 0.2630 S33: 0.3117 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 200 A 267 REMARK 3 ORIGIN FOR THE GROUP (A): 24.7435 -20.9884 -16.7649 REMARK 3 T TENSOR REMARK 3 T11: 0.0591 T22: 0.0351 REMARK 3 T33: 0.1015 T12: -0.0441 REMARK 3 T13: 0.0227 T23: -0.0093 REMARK 3 L TENSOR REMARK 3 L11: 5.1635 L22: 5.0714 REMARK 3 L33: 3.2329 L12: -0.7281 REMARK 3 L13: 0.7942 L23: -0.1694 REMARK 3 S TENSOR REMARK 3 S11: -0.0245 S12: 0.0304 S13: -0.3445 REMARK 3 S21: -0.0544 S22: -0.0416 S23: -0.0627 REMARK 3 S31: 0.0987 S32: -0.0836 S33: 0.0662 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 268 A 318 REMARK 3 ORIGIN FOR THE GROUP (A): 21.7811 11.5580 -24.2511 REMARK 3 T TENSOR REMARK 3 T11: 0.0669 T22: 0.0600 REMARK 3 T33: 0.1573 T12: 0.0001 REMARK 3 T13: -0.0417 T23: 0.0015 REMARK 3 L TENSOR REMARK 3 L11: 2.8751 L22: 1.4556 REMARK 3 L33: 3.3991 L12: -1.1991 REMARK 3 L13: 0.2443 L23: -1.8862 REMARK 3 S TENSOR REMARK 3 S11: -0.0620 S12: 0.0270 S13: 0.2700 REMARK 3 S21: 0.0572 S22: -0.0089 S23: -0.1014 REMARK 3 S31: -0.0767 S32: 0.0457 S33: 0.0709 REMARK 3 REMARK 3 TLS GROUP : 6 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 319 A 389 REMARK 3 ORIGIN FOR THE GROUP (A): 41.3485 9.5689 -19.8434 REMARK 3 T TENSOR REMARK 3 T11: 0.0757 T22: 0.1066 REMARK 3 T33: 0.0880 T12: -0.0517 REMARK 3 T13: -0.0272 T23: 0.0244 REMARK 3 L TENSOR REMARK 3 L11: 5.6434 L22: 9.5474 REMARK 3 L33: 1.7523 L12: 0.9130 REMARK 3 L13: 1.0028 L23: -3.1725 REMARK 3 S TENSOR REMARK 3 S11: 0.0248 S12: 0.0050 S13: -0.2183 REMARK 3 S21: 0.0563 S22: -0.0614 S23: -0.2370 REMARK 3 S31: 0.0324 S32: 0.0408 S33: 0.0366 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN USED IF PRESENT IN REMARK 3 THE INPUT REMARK 4 REMARK 4 4LDU COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 25-JUL-13. REMARK 100 THE DEPOSITION ID IS D_1000080504. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 16-MAY-10 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID14-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.93340 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 210 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 23983 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.150 REMARK 200 RESOLUTION RANGE LOW (A) : 45.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 200 DATA REDUNDANCY : 2.800 REMARK 200 R MERGE (I) : 0.06300 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 11.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.15 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.27 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 2.80 REMARK 200 R MERGE FOR SHELL (I) : 0.43000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.900 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 51.32 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.53 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 100 NL 13 MG/ML ARF5DBD +100 NL REMARK 280 CRYSTALLIZATION BUFFER (20 MM TRIS 7.5, 12.5% PEG MME 2000), REMARK 280 VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 293K, PH 7.5 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 34.80650 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 45.75100 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 34.80650 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 45.75100 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2940 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 34020 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -61.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 31.73694 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 -70.35501 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 MET A 2 REMARK 465 ALA A 3 REMARK 465 SER A 4 REMARK 465 LEU A 5 REMARK 465 SER A 6 REMARK 465 CYS A 7 REMARK 465 VAL A 8 REMARK 465 GLU A 9 REMARK 465 ASP A 10 REMARK 465 LYS A 11 REMARK 465 MET A 12 REMARK 465 LYS A 13 REMARK 465 THR A 14 REMARK 465 SER A 15 REMARK 465 CYS A 16 REMARK 465 LEU A 17 REMARK 465 VAL A 18 REMARK 465 ASN A 19 REMARK 465 GLY A 20 REMARK 465 GLY A 21 REMARK 465 GLY A 22 REMARK 465 THR A 23 REMARK 465 ILE A 24 REMARK 465 THR A 25 REMARK 465 THR A 26 REMARK 465 THR A 27 REMARK 465 THR A 28 REMARK 465 SER A 29 REMARK 465 GLN A 30 REMARK 465 SER A 31 REMARK 465 THR A 32 REMARK 465 LEU A 33 REMARK 465 LEU A 34 REMARK 465 GLU A 35 REMARK 465 GLU A 36 REMARK 465 MET A 37 REMARK 465 LYS A 38 REMARK 465 LEU A 39 REMARK 465 LEU A 40 REMARK 465 LYS A 41 REMARK 465 ASP A 42 REMARK 465 GLN A 43 REMARK 465 SER A 44 REMARK 465 GLY A 45 REMARK 465 THR A 46 REMARK 465 ARG A 47 REMARK 465 LYS A 48 REMARK 465 ARG A 261 REMARK 465 GLN A 262 REMARK 465 GLN A 263 REMARK 465 THR A 264 REMARK 465 ALA A 265 REMARK 465 PRO A 390 REMARK 465 ASN A 391 REMARK 465 SER A 392 REMARK 465 TYR A 393 REMARK 465 SER A 394 REMARK 465 GLN A 395 REMARK 465 SER A 396 REMARK 465 MET A 397 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ARG A 89 7.25 49.82 REMARK 500 GLU A 205 -1.11 74.09 REMARK 500 THR A 224 -97.74 -113.05 REMARK 500 ILE A 318 -76.64 -93.28 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 GLN A 192 PRO A 193 143.84 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4LDV RELATED DB: PDB REMARK 900 RELATED ID: 4LDW RELATED DB: PDB REMARK 900 RELATED ID: 4LDX RELATED DB: PDB REMARK 900 RELATED ID: 4LDY RELATED DB: PDB DBREF 4LDU A 1 390 UNP P93024 ARFE_ARATH 1 390 SEQADV 4LDU ASN A 391 UNP P93024 EXPRESSION TAG SEQADV 4LDU SER A 392 UNP P93024 EXPRESSION TAG SEQADV 4LDU TYR A 393 UNP P93024 EXPRESSION TAG SEQADV 4LDU SER A 394 UNP P93024 EXPRESSION TAG SEQADV 4LDU GLN A 395 UNP P93024 EXPRESSION TAG SEQADV 4LDU SER A 396 UNP P93024 EXPRESSION TAG SEQADV 4LDU MET A 397 UNP P93024 EXPRESSION TAG SEQRES 1 A 397 MET MET ALA SER LEU SER CYS VAL GLU ASP LYS MET LYS SEQRES 2 A 397 THR SER CYS LEU VAL ASN GLY GLY GLY THR ILE THR THR SEQRES 3 A 397 THR THR SER GLN SER THR LEU LEU GLU GLU MET LYS LEU SEQRES 4 A 397 LEU LYS ASP GLN SER GLY THR ARG LYS PRO VAL ILE ASN SEQRES 5 A 397 SER GLU LEU TRP HIS ALA CYS ALA GLY PRO LEU VAL CYS SEQRES 6 A 397 LEU PRO GLN VAL GLY SER LEU VAL TYR TYR PHE SER GLN SEQRES 7 A 397 GLY HIS SER GLU GLN VAL ALA VAL SER THR ARG ARG SER SEQRES 8 A 397 ALA THR THR GLN VAL PRO ASN TYR PRO ASN LEU PRO SER SEQRES 9 A 397 GLN LEU MET CYS GLN VAL HIS ASN VAL THR LEU HIS ALA SEQRES 10 A 397 ASP LYS ASP SER ASP GLU ILE TYR ALA GLN MET SER LEU SEQRES 11 A 397 GLN PRO VAL HIS SER GLU ARG ASP VAL PHE PRO VAL PRO SEQRES 12 A 397 ASP PHE GLY MET LEU ARG GLY SER LYS HIS PRO THR GLU SEQRES 13 A 397 PHE PHE CYS LYS THR LEU THR ALA SER ASP THR SER THR SEQRES 14 A 397 HIS GLY GLY PHE SER VAL PRO ARG ARG ALA ALA GLU LYS SEQRES 15 A 397 LEU PHE PRO PRO LEU ASP TYR SER ALA GLN PRO PRO THR SEQRES 16 A 397 GLN GLU LEU VAL VAL ARG ASP LEU HIS GLU ASN THR TRP SEQRES 17 A 397 THR PHE ARG HIS ILE TYR ARG GLY GLN PRO LYS ARG HIS SEQRES 18 A 397 LEU LEU THR THR GLY TRP SER LEU PHE VAL GLY SER LYS SEQRES 19 A 397 ARG LEU ARG ALA GLY ASP SER VAL LEU PHE ILE ARG ASP SEQRES 20 A 397 GLU LYS SER GLN LEU MET VAL GLY VAL ARG ARG ALA ASN SEQRES 21 A 397 ARG GLN GLN THR ALA LEU PRO SER SER VAL LEU SER ALA SEQRES 22 A 397 ASP SER MET HIS ILE GLY VAL LEU ALA ALA ALA ALA HIS SEQRES 23 A 397 ALA THR ALA ASN ARG THR PRO PHE LEU ILE PHE TYR ASN SEQRES 24 A 397 PRO ARG ALA CYS PRO ALA GLU PHE VAL ILE PRO LEU ALA SEQRES 25 A 397 LYS TYR ARG LYS ALA ILE CYS GLY SER GLN LEU SER VAL SEQRES 26 A 397 GLY MET ARG PHE GLY MET MET PHE GLU THR GLU ASP SER SEQRES 27 A 397 GLY LYS ARG ARG TYR MET GLY THR ILE VAL GLY ILE SER SEQRES 28 A 397 ASP LEU ASP PRO LEU ARG TRP PRO GLY SER LYS TRP ARG SEQRES 29 A 397 ASN LEU GLN VAL GLU TRP ASP GLU PRO GLY CYS ASN ASP SEQRES 30 A 397 LYS PRO THR ARG VAL SER PRO TRP ASP ILE GLU THR PRO SEQRES 31 A 397 ASN SER TYR SER GLN SER MET HET CL A 401 1 HET CL A 402 1 HETNAM CL CHLORIDE ION FORMUL 2 CL 2(CL 1-) FORMUL 4 HOH *189(H2 O) HELIX 1 1 ASN A 52 GLY A 61 1 10 HELIX 2 2 PHE A 76 ARG A 89 1 14 HELIX 3 3 SER A 135 VAL A 139 5 5 HELIX 4 4 PRO A 141 GLY A 146 5 6 HELIX 5 5 PRO A 176 PHE A 184 1 9 HELIX 6 6 GLY A 226 ARG A 235 1 10 HELIX 7 7 SER A 272 ARG A 291 1 20 HELIX 8 8 LEU A 311 ILE A 318 1 8 HELIX 9 9 SER A 383 ILE A 387 5 5 SHEET 1 A 5 PHE A 294 TYR A 298 0 SHEET 2 A 5 ILE A 124 PRO A 132 -1 N ALA A 126 O TYR A 298 SHEET 3 A 5 LEU A 106 ALA A 117 -1 N HIS A 111 O SER A 129 SHEET 4 A 5 LEU A 72 TYR A 75 -1 N VAL A 73 O CYS A 108 SHEET 5 A 5 VAL A 308 PRO A 310 -1 O ILE A 309 N TYR A 74 SHEET 1 B 3 GLU A 156 THR A 161 0 SHEET 2 B 3 SER A 241 ARG A 246 -1 O VAL A 242 N LYS A 160 SHEET 3 B 3 LEU A 252 ARG A 257 -1 O GLY A 255 N LEU A 243 SHEET 1 C 4 PHE A 173 VAL A 175 0 SHEET 2 C 4 ARG A 220 LEU A 223 -1 O HIS A 221 N VAL A 175 SHEET 3 C 4 THR A 207 ARG A 215 -1 N ILE A 213 O LEU A 222 SHEET 4 C 4 THR A 195 ARG A 201 -1 N LEU A 198 O PHE A 210 SHEET 1 D 4 ARG A 328 GLU A 334 0 SHEET 2 D 4 LYS A 340 ILE A 350 -1 O TYR A 343 N MET A 331 SHEET 3 D 4 LEU A 366 TRP A 370 -1 O GLN A 367 N VAL A 348 SHEET 4 D 4 ARG A 381 VAL A 382 -1 O VAL A 382 N LEU A 366 CISPEP 1 GLN A 217 PRO A 218 0 4.11 CRYST1 69.613 91.502 77.182 90.00 114.28 90.00 C 1 2 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.014365 0.000000 0.006480 0.00000 SCALE2 0.000000 0.010929 0.000000 0.00000 SCALE3 0.000000 0.000000 0.014214 0.00000