HEADER DNA BINDING PROTEIN 25-JUN-13 4LDZ TITLE CRYSTAL STRUCTURE OF THE FULL-LENGTH RESPONSE REGULATOR DESR IN THE TITLE 2 ACTIVE STATE COMPND MOL_ID: 1; COMPND 2 MOLECULE: TRANSCRIPTIONAL REGULATORY PROTEIN DESR; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BACILLUS SUBTILIS SUBSP. SUBTILIS; SOURCE 3 ORGANISM_TAXID: 224308; SOURCE 4 STRAIN: 168; SOURCE 5 GENE: DESR, YOCG, BSU19200; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: TOP10F'; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PQE80L KEYWDS RESPONSE REGULATOR, TWO-COMPONENT SYSTEM, TRANSCRIPTION FACTOR, KEYWDS 2 RECEIVER DOMAIN, DNA BINDING DOMAIN, PHOSPHORYLATION, ACTIVE STATE, KEYWDS 3 DNA BINDING PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR F.TRAJTENBERG,N.LARRIEUX,A.BUSCHIAZZO REVDAT 3 28-FEB-24 4LDZ 1 REMARK SEQADV LINK REVDAT 2 06-MAY-15 4LDZ 1 JRNL REVDAT 1 16-JUL-14 4LDZ 0 JRNL AUTH F.TRAJTENBERG,D.ALBANESI,N.RUETALO,H.BOTTI,A.E.MECHALY, JRNL AUTH 2 M.NIEVES,P.S.AGUILAR,L.CYBULSKI,N.LARRIEUX,D.DE MENDOZA, JRNL AUTH 3 A.BUSCHIAZZO JRNL TITL ALLOSTERIC ACTIVATION OF BACTERIAL RESPONSE REGULATORS: THE JRNL TITL 2 ROLE OF THE COGNATE HISTIDINE KINASE BEYOND PHOSPHORYLATION. JRNL REF MBIO V. 5 02105 2014 JRNL REFN ESSN 2150-7511 JRNL PMID 25406381 JRNL DOI 10.1128/MBIO.02105-14 REMARK 2 REMARK 2 RESOLUTION. 2.31 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : BUSTER-TNT REMARK 3 AUTHORS : BRICOGNE,BLANC,BRANDL,FLENSBURG,KELLER, REMARK 3 : PACIOREK,ROVERSI,SMART,VONRHEIN,WOMACK, REMARK 3 : MATTHEWS,TEN EYCK,TRONRUD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.31 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 28.92 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 22494 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.191 REMARK 3 R VALUE (WORKING SET) : 0.189 REMARK 3 FREE R VALUE : 0.221 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.120 REMARK 3 FREE R VALUE TEST SET COUNT : 1152 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 11 REMARK 3 BIN RESOLUTION RANGE HIGH (ANGSTROMS) : 2.31 REMARK 3 BIN RESOLUTION RANGE LOW (ANGSTROMS) : 2.42 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 100.0 REMARK 3 REFLECTIONS IN BIN (WORKING + TEST SET) : 2928 REMARK 3 BIN R VALUE (WORKING + TEST SET) : 0.2910 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 2782 REMARK 3 BIN R VALUE (WORKING SET) : 0.2887 REMARK 3 BIN FREE R VALUE : 0.3333 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 4.99 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 146 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2843 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 24 REMARK 3 SOLVENT ATOMS : 120 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 58.63 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 3.32510 REMARK 3 B22 (A**2) : 1.73730 REMARK 3 B33 (A**2) : -5.06240 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.323 REMARK 3 DPI (BLOW EQ-10) BASED ON R VALUE (A) : NULL REMARK 3 DPI (BLOW EQ-9) BASED ON FREE R VALUE (A) : NULL REMARK 3 DPI (CRUICKSHANK) BASED ON R VALUE (A) : 0.233 REMARK 3 DPI (CRUICKSHANK) BASED ON FREE R VALUE (A) : NULL REMARK 3 REMARK 3 REFERENCES: BLOW, D. (2002) ACTA CRYST D58, 792-797 REMARK 3 CRUICKSHANK, D.W.J. (1999) ACTA CRYST D55, 583-601 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.948 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.918 REMARK 3 REMARK 3 NUMBER OF GEOMETRIC FUNCTION TERMS DEFINED : 15 REMARK 3 TERM COUNT WEIGHT FUNCTION. REMARK 3 BOND LENGTHS : 2907 ; 2.000 ; HARMONIC REMARK 3 BOND ANGLES : 3919 ; 2.000 ; HARMONIC REMARK 3 TORSION ANGLES : 1042 ; 2.000 ; SINUSOIDAL REMARK 3 TRIGONAL CARBON PLANES : 81 ; 2.000 ; HARMONIC REMARK 3 GENERAL PLANES : 416 ; 5.000 ; HARMONIC REMARK 3 ISOTROPIC THERMAL FACTORS : 2907 ; 20.000 ; HARMONIC REMARK 3 BAD NON-BONDED CONTACTS : 3 ; 5.000 ; SEMIHARMONIC REMARK 3 IMPROPER TORSIONS : NULL ; NULL ; NULL REMARK 3 PSEUDOROTATION ANGLES : NULL ; NULL ; NULL REMARK 3 CHIRAL IMPROPER TORSION : 407 ; 5.000 ; SEMIHARMONIC REMARK 3 SUM OF OCCUPANCIES : NULL ; NULL ; NULL REMARK 3 UTILITY DISTANCES : 14 ; 1.000 ; HARMONIC REMARK 3 UTILITY ANGLES : 6 ; 1.000 ; HARMONIC REMARK 3 UTILITY TORSION : NULL ; NULL ; NULL REMARK 3 IDEAL-DIST CONTACT TERM : 3402 ; 4.000 ; SEMIHARMONIC REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.010 REMARK 3 BOND ANGLES (DEGREES) : 1.17 REMARK 3 PEPTIDE OMEGA TORSION ANGLES (DEGREES) : 3.01 REMARK 3 OTHER TORSION ANGLES (DEGREES) : 16.70 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: {A|-1 - 133} REMARK 3 ORIGIN FOR THE GROUP (A): 3.4643 10.7373 26.4449 REMARK 3 T TENSOR REMARK 3 T11: -0.1311 T22: -0.1809 REMARK 3 T33: -0.0193 T12: 0.0040 REMARK 3 T13: -0.0268 T23: 0.0553 REMARK 3 L TENSOR REMARK 3 L11: 3.0575 L22: 2.0627 REMARK 3 L33: 2.1889 L12: -0.6010 REMARK 3 L13: 0.3712 L23: 0.5820 REMARK 3 S TENSOR REMARK 3 S11: 0.0958 S12: 0.0823 S13: 0.2526 REMARK 3 S21: -0.0231 S22: -0.0562 S23: 0.0169 REMARK 3 S31: -0.0984 S32: 0.1169 S33: -0.0396 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: {A|137 - 194} REMARK 3 ORIGIN FOR THE GROUP (A): 6.8621 5.8626 -1.5889 REMARK 3 T TENSOR REMARK 3 T11: -0.0941 T22: 0.3040 REMARK 3 T33: -0.3040 T12: 0.1520 REMARK 3 T13: 0.0018 T23: 0.1424 REMARK 3 L TENSOR REMARK 3 L11: 0.5934 L22: 6.7784 REMARK 3 L33: 8.3155 L12: 1.2021 REMARK 3 L13: 2.9104 L23: 1.9101 REMARK 3 S TENSOR REMARK 3 S11: 0.1467 S12: 0.5127 S13: -0.2248 REMARK 3 S21: -0.4311 S22: -0.3512 S23: 0.4033 REMARK 3 S31: -0.1341 S32: -0.5303 S33: 0.2045 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: {B|0 - 133} REMARK 3 ORIGIN FOR THE GROUP (A): -17.2462 -6.3844 24.2774 REMARK 3 T TENSOR REMARK 3 T11: -0.1294 T22: -0.1476 REMARK 3 T33: -0.0489 T12: 0.0150 REMARK 3 T13: -0.0213 T23: 0.0138 REMARK 3 L TENSOR REMARK 3 L11: 3.3553 L22: 3.0895 REMARK 3 L33: 0.8960 L12: -0.9567 REMARK 3 L13: 0.2701 L23: -0.2772 REMARK 3 S TENSOR REMARK 3 S11: 0.1038 S12: 0.1572 S13: -0.0610 REMARK 3 S21: -0.0189 S22: -0.0445 S23: 0.2011 REMARK 3 S31: 0.1133 S32: -0.0604 S33: -0.0594 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: {B|137 - 187} REMARK 3 ORIGIN FOR THE GROUP (A): -7.7434 30.2526 7.5226 REMARK 3 T TENSOR REMARK 3 T11: -0.0019 T22: 0.3040 REMARK 3 T33: -0.3040 T12: -0.1511 REMARK 3 T13: 0.1499 T23: 0.1520 REMARK 3 L TENSOR REMARK 3 L11: 3.1651 L22: 2.2957 REMARK 3 L33: 8.3096 L12: -2.9104 REMARK 3 L13: 2.5265 L23: -2.2278 REMARK 3 S TENSOR REMARK 3 S11: 0.0897 S12: -0.5215 S13: 0.0600 REMARK 3 S21: 0.0841 S22: 0.2857 S23: 0.1210 REMARK 3 S31: 0.2734 S32: 0.5330 S33: -0.3754 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4LDZ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 26-JUN-13. REMARK 100 THE DEPOSITION ID IS D_1000080509. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 22-MAR-12 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU MICROMAX-007 HF REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418 REMARK 200 MONOCHROMATOR : MULTILAYER MIRRORS (VARIMAX-HF) REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : MAR SCANNER 345 MM PLATE REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : SCALA 3.3.20 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 22585 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.307 REMARK 200 RESOLUTION RANGE LOW (A) : 69.876 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 200 DATA REDUNDANCY : 4.100 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.07500 REMARK 200 FOR THE DATA SET : 15.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.31 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.43 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.7 REMARK 200 DATA REDUNDANCY IN SHELL : 4.10 REMARK 200 R MERGE FOR SHELL (I) : 0.50600 REMARK 200 R SYM FOR SHELL (I) : 0.50600 REMARK 200 FOR SHELL : 1.500 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 55.28 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.75 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 12% PEG3350, 0.2 M SODIUM TARTRATE, REMARK 280 0.2 M MGCL2, 5 MM BEF3 AND 5% (W/V) METHANOL, VAPOR DIFFUSION , REMARK 280 PH 8, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 22.80600 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 69.87550 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 38.82300 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 69.87550 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 22.80600 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 38.82300 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3440 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 19460 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -46.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A -3 REMARK 465 SER A -2 REMARK 465 LYS A 195 REMARK 465 GLY A 196 REMARK 465 TRP A 197 REMARK 465 PHE A 198 REMARK 465 LYS A 199 REMARK 465 GLY B -3 REMARK 465 SER B -2 REMARK 465 GLY B -1 REMARK 465 ALA B 188 REMARK 465 ILE B 189 REMARK 465 THR B 190 REMARK 465 ARG B 191 REMARK 465 SER B 192 REMARK 465 LYS B 193 REMARK 465 GLU B 194 REMARK 465 LYS B 195 REMARK 465 GLY B 196 REMARK 465 TRP B 197 REMARK 465 PHE B 198 REMARK 465 LYS B 199 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 70 CG CD CE NZ REMARK 470 GLU A 108 CG CD OE1 OE2 REMARK 470 ARG A 141 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 143 CG CD CE NZ REMARK 470 LYS A 153 CG CD CE NZ REMARK 470 LYS A 156 CG CD CE NZ REMARK 470 ILE A 158 CG1 CG2 CD1 REMARK 470 GLN A 160 CG CD OE1 NE2 REMARK 470 GLU A 161 CG CD OE1 OE2 REMARK 470 LYS A 165 CG CD CE NZ REMARK 470 SER A 166 OG REMARK 470 ARG A 170 CG CD NE CZ NH1 NH2 REMARK 470 ASN A 171 CG OD1 ND2 REMARK 470 GLU B 134 CG CD OE1 OE2 REMARK 470 ASN B 136 CG OD1 ND2 REMARK 470 LEU B 138 CG CD1 CD2 REMARK 470 LYS B 143 CG CD CE NZ REMARK 470 GLU B 144 CG CD OE1 OE2 REMARK 470 GLU B 147 CG CD OE1 OE2 REMARK 470 LYS B 153 CG CD CE NZ REMARK 470 ASN B 154 CG OD1 ND2 REMARK 470 LYS B 156 CG CD CE NZ REMARK 470 GLN B 160 CG CD OE1 NE2 REMARK 470 LYS B 165 CG CD CE NZ REMARK 470 TYR B 172 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 GLU B 178 CG CD OE1 OE2 REMARK 470 LYS B 179 CG CD CE NZ REMARK 470 GLU B 181 CG CD OE1 OE2 REMARK 470 LYS B 183 CG CD CE NZ REMARK 470 ARG B 185 CG CD NE CZ NH1 NH2 REMARK 470 ILE B 186 CG1 CG2 CD1 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA A 83 59.54 -103.15 REMARK 500 ASP A 103 45.34 -100.89 REMARK 500 GLU A 107 -4.04 -58.83 REMARK 500 ALA B 83 62.62 -101.61 REMARK 500 ASP B 103 48.11 -95.61 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 201 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 9 OD1 REMARK 620 2 ASP A 54 OD2 84.5 REMARK 620 3 GLU A 56 O 87.9 79.3 REMARK 620 4 HOH A 302 O 95.6 179.8 100.9 REMARK 620 5 HOH A 303 O 77.5 92.1 163.8 87.8 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 205 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASN A 22 O REMARK 620 2 GLU A 24 O 86.3 REMARK 620 3 MET A 27 O 104.3 80.4 REMARK 620 4 HOH A 313 O 87.8 166.8 89.7 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 BEF A 202 BE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 54 OD1 REMARK 620 2 BEF A 202 F1 114.4 REMARK 620 3 BEF A 202 F2 107.1 106.5 REMARK 620 4 BEF A 202 F3 117.1 106.6 104.2 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG B 201 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP B 9 OD1 REMARK 620 2 ASP B 54 OD2 83.1 REMARK 620 3 GLU B 56 O 88.9 83.7 REMARK 620 4 HOH B 301 O 80.7 89.5 168.2 REMARK 620 5 HOH B 302 O 94.4 175.5 92.6 93.8 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA B 203 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASN B 22 O REMARK 620 2 GLU B 24 O 85.2 REMARK 620 3 MET B 27 O 107.4 85.7 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 BEF B 202 BE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP B 54 OD1 REMARK 620 2 BEF B 202 F1 110.6 REMARK 620 3 BEF B 202 F2 111.9 104.1 REMARK 620 4 BEF B 202 F3 117.8 103.5 107.8 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE BEF A 202 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 203 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 204 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NA A 205 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG B 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE BEF B 202 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NA B 203 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4LE0 RELATED DB: PDB REMARK 900 RELATED ID: 4LE1 RELATED DB: PDB REMARK 900 RELATED ID: 4LE2 RELATED DB: PDB DBREF 4LDZ A 1 199 UNP O34723 DESR_BACSU 1 199 DBREF 4LDZ B 1 199 UNP O34723 DESR_BACSU 1 199 SEQADV 4LDZ GLY A -3 UNP O34723 EXPRESSION TAG SEQADV 4LDZ SER A -2 UNP O34723 EXPRESSION TAG SEQADV 4LDZ GLY A -1 UNP O34723 EXPRESSION TAG SEQADV 4LDZ SER A 0 UNP O34723 EXPRESSION TAG SEQADV 4LDZ GLY B -3 UNP O34723 EXPRESSION TAG SEQADV 4LDZ SER B -2 UNP O34723 EXPRESSION TAG SEQADV 4LDZ GLY B -1 UNP O34723 EXPRESSION TAG SEQADV 4LDZ SER B 0 UNP O34723 EXPRESSION TAG SEQRES 1 A 203 GLY SER GLY SER MET ILE SER ILE PHE ILE ALA GLU ASP SEQRES 2 A 203 GLN GLN MET LEU LEU GLY ALA LEU GLY SER LEU LEU ASN SEQRES 3 A 203 LEU GLU ASP ASP MET GLU VAL VAL GLY LYS GLY THR THR SEQRES 4 A 203 GLY GLN ASP ALA VAL ASP PHE VAL LYS LYS ARG GLN PRO SEQRES 5 A 203 ASP VAL CYS ILE MET ASP ILE GLU MET PRO GLY LYS THR SEQRES 6 A 203 GLY LEU GLU ALA ALA GLU GLU LEU LYS ASP THR GLY CYS SEQRES 7 A 203 LYS ILE ILE ILE LEU THR THR PHE ALA ARG PRO GLY TYR SEQRES 8 A 203 PHE GLN ARG ALA ILE LYS ALA GLY VAL LYS GLY TYR LEU SEQRES 9 A 203 LEU LYS ASP SER PRO SER GLU GLU LEU ALA ASN ALA ILE SEQRES 10 A 203 ARG SER VAL MET ASN GLY LYS ARG ILE TYR ALA PRO GLU SEQRES 11 A 203 LEU MET GLU ASP LEU TYR SER GLU ALA ASN PRO LEU THR SEQRES 12 A 203 ASP ARG GLU LYS GLU VAL LEU GLU LEU VAL ALA ASP GLY SEQRES 13 A 203 LYS ASN THR LYS GLU ILE ALA GLN GLU LEU SER ILE LYS SEQRES 14 A 203 SER GLY THR VAL ARG ASN TYR ILE SER MET ILE LEU GLU SEQRES 15 A 203 LYS LEU GLU VAL LYS ASN ARG ILE GLU ALA ILE THR ARG SEQRES 16 A 203 SER LYS GLU LYS GLY TRP PHE LYS SEQRES 1 B 203 GLY SER GLY SER MET ILE SER ILE PHE ILE ALA GLU ASP SEQRES 2 B 203 GLN GLN MET LEU LEU GLY ALA LEU GLY SER LEU LEU ASN SEQRES 3 B 203 LEU GLU ASP ASP MET GLU VAL VAL GLY LYS GLY THR THR SEQRES 4 B 203 GLY GLN ASP ALA VAL ASP PHE VAL LYS LYS ARG GLN PRO SEQRES 5 B 203 ASP VAL CYS ILE MET ASP ILE GLU MET PRO GLY LYS THR SEQRES 6 B 203 GLY LEU GLU ALA ALA GLU GLU LEU LYS ASP THR GLY CYS SEQRES 7 B 203 LYS ILE ILE ILE LEU THR THR PHE ALA ARG PRO GLY TYR SEQRES 8 B 203 PHE GLN ARG ALA ILE LYS ALA GLY VAL LYS GLY TYR LEU SEQRES 9 B 203 LEU LYS ASP SER PRO SER GLU GLU LEU ALA ASN ALA ILE SEQRES 10 B 203 ARG SER VAL MET ASN GLY LYS ARG ILE TYR ALA PRO GLU SEQRES 11 B 203 LEU MET GLU ASP LEU TYR SER GLU ALA ASN PRO LEU THR SEQRES 12 B 203 ASP ARG GLU LYS GLU VAL LEU GLU LEU VAL ALA ASP GLY SEQRES 13 B 203 LYS ASN THR LYS GLU ILE ALA GLN GLU LEU SER ILE LYS SEQRES 14 B 203 SER GLY THR VAL ARG ASN TYR ILE SER MET ILE LEU GLU SEQRES 15 B 203 LYS LEU GLU VAL LYS ASN ARG ILE GLU ALA ILE THR ARG SEQRES 16 B 203 SER LYS GLU LYS GLY TRP PHE LYS HET MG A 201 1 HET BEF A 202 4 HET GOL A 203 6 HET GOL A 204 6 HET NA A 205 1 HET MG B 201 1 HET BEF B 202 4 HET NA B 203 1 HETNAM MG MAGNESIUM ION HETNAM BEF BERYLLIUM TRIFLUORIDE ION HETNAM GOL GLYCEROL HETNAM NA SODIUM ION HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 3 MG 2(MG 2+) FORMUL 4 BEF 2(BE F3 1-) FORMUL 5 GOL 2(C3 H8 O3) FORMUL 7 NA 2(NA 1+) FORMUL 11 HOH *120(H2 O) HELIX 1 1 GLN A 10 LEU A 23 1 14 HELIX 2 2 THR A 35 GLN A 47 1 13 HELIX 3 3 THR A 61 LEU A 69 1 9 HELIX 4 4 ARG A 84 ALA A 94 1 11 HELIX 5 5 PRO A 105 GLU A 107 5 3 HELIX 6 6 GLU A 108 ASN A 118 1 11 HELIX 7 7 ALA A 124 TYR A 132 1 9 HELIX 8 8 THR A 139 GLY A 152 1 14 HELIX 9 9 ASN A 154 LEU A 162 1 9 HELIX 10 10 LYS A 165 LYS A 193 1 29 HELIX 11 11 GLN B 10 LEU B 23 1 14 HELIX 12 12 THR B 35 GLN B 47 1 13 HELIX 13 13 THR B 61 LEU B 69 1 9 HELIX 14 14 ARG B 84 ALA B 94 1 11 HELIX 15 15 PRO B 105 GLU B 107 5 3 HELIX 16 16 GLU B 108 ASN B 118 1 11 HELIX 17 17 PRO B 125 ASP B 130 1 6 HELIX 18 18 THR B 139 GLY B 152 1 14 HELIX 19 19 ASN B 154 LEU B 162 1 9 HELIX 20 20 LYS B 165 GLU B 187 1 23 SHEET 1 A 6 MET A 27 GLY A 33 0 SHEET 2 A 6 ILE A 2 ALA A 7 1 N ILE A 4 O GLU A 28 SHEET 3 A 6 VAL A 50 MET A 53 1 O ILE A 52 N ALA A 7 SHEET 4 A 6 LYS A 75 THR A 80 1 O ILE A 77 N MET A 53 SHEET 5 A 6 GLY A 98 LEU A 101 1 O LEU A 100 N ILE A 78 SHEET 6 A 6 ILE A 122 TYR A 123 1 O ILE A 122 N TYR A 99 SHEET 1 B 6 MET B 27 GLY B 33 0 SHEET 2 B 6 ILE B 2 ALA B 7 1 N ILE B 4 O GLU B 28 SHEET 3 B 6 VAL B 50 MET B 53 1 O ILE B 52 N PHE B 5 SHEET 4 B 6 LYS B 75 THR B 80 1 O ILE B 77 N MET B 53 SHEET 5 B 6 GLY B 98 LEU B 101 1 O LEU B 100 N ILE B 78 SHEET 6 B 6 ILE B 122 TYR B 123 1 O ILE B 122 N TYR B 99 LINK OD1 ASP A 9 MG MG A 201 1555 1555 2.11 LINK O ASN A 22 NA NA A 205 1555 1555 2.50 LINK O GLU A 24 NA NA A 205 1555 1555 2.42 LINK O MET A 27 NA NA A 205 1555 1555 2.38 LINK OD2 ASP A 54 MG MG A 201 1555 1555 2.01 LINK OD1 ASP A 54 BE BEF A 202 1555 1555 1.50 LINK O GLU A 56 MG MG A 201 1555 1555 2.10 LINK MG MG A 201 O HOH A 302 1555 1555 2.04 LINK MG MG A 201 O HOH A 303 1555 1555 2.15 LINK NA NA A 205 O HOH A 313 1555 1555 2.52 LINK OD1 ASP B 9 MG MG B 201 1555 1555 2.11 LINK O ASN B 22 NA NA B 203 1555 1555 2.63 LINK O GLU B 24 NA NA B 203 1555 1555 2.33 LINK O MET B 27 NA NA B 203 1555 1555 2.25 LINK OD2 ASP B 54 MG MG B 201 1555 1555 2.13 LINK OD1 ASP B 54 BE BEF B 202 1555 1555 1.55 LINK O GLU B 56 MG MG B 201 1555 1555 2.04 LINK MG MG B 201 O HOH B 301 1555 1555 2.05 LINK MG MG B 201 O HOH B 302 1555 1555 2.05 SITE 1 AC1 6 ASP A 9 ASP A 54 GLU A 56 BEF A 202 SITE 2 AC1 6 HOH A 302 HOH A 303 SITE 1 AC2 10 ASP A 54 ILE A 55 GLU A 56 THR A 80 SITE 2 AC2 10 THR A 81 PHE A 82 LYS A 102 MG A 201 SITE 3 AC2 10 GOL A 203 HOH A 302 SITE 1 AC3 7 GLN A 10 THR A 81 PHE A 82 LYS A 102 SITE 2 AC3 7 BEF A 202 HOH A 303 GLN B 10 SITE 1 AC4 2 SER A 19 ASN A 22 SITE 1 AC5 4 ASN A 22 GLU A 24 MET A 27 HOH A 313 SITE 1 AC6 6 ASP B 9 ASP B 54 GLU B 56 BEF B 202 SITE 2 AC6 6 HOH B 301 HOH B 302 SITE 1 AC7 10 ASP B 54 ILE B 55 GLU B 56 THR B 80 SITE 2 AC7 10 THR B 81 PHE B 82 LYS B 102 MG B 201 SITE 3 AC7 10 HOH B 301 HOH B 302 SITE 1 AC8 3 ASN B 22 GLU B 24 MET B 27 CRYST1 45.612 77.646 139.751 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.021924 0.000000 0.000000 0.00000 SCALE2 0.000000 0.012879 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007156 0.00000