HEADER SUGAR BINDING PROTEIN 25-JUN-13 4LED TITLE THE CRYSTAL STRUCTURE OF PYOCIN L1 BOUND TO D-RHAMNOSE AT 2.37 TITLE 2 ANGSTROMS COMPND MOL_ID: 1; COMPND 2 MOLECULE: PYOCIN L1; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PSEUDOMONAS AERUGINOSA; SOURCE 3 ORGANISM_TAXID: 1333543; SOURCE 4 STRAIN: C 1433; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3) KEYWDS MONOCOT MANNOSE BINDING PROTEIN, GALANTHUS NIVALIS AGGLUTININ, BETA KEYWDS 2 PRISM, BACTERIOCIN, ANTIMICROBIAL PROTEIN, EXTRACELLULAR, SUGAR KEYWDS 3 BINDING PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR R.GRINTER,A.W.ROSZAK,L.MCCAUGHEY,C.J.COGDELL,D.WALKER REVDAT 4 20-SEP-23 4LED 1 HETSYN REVDAT 3 29-JUL-20 4LED 1 COMPND REMARK HETNAM SITE REVDAT 2 19-MAR-14 4LED 1 JRNL REVDAT 1 19-FEB-14 4LED 0 JRNL AUTH L.C.MCCAUGHEY,R.GRINTER,I.JOSTS,A.W.ROSZAK,K.I.WALEN, JRNL AUTH 2 R.J.COGDELL,J.MILNER,T.EVANS,S.KELLY,N.P.TUCKER,O.BYRON, JRNL AUTH 3 B.SMITH,D.WALKER JRNL TITL LECTIN-LIKE BACTERIOCINS FROM PSEUDOMONAS SPP. UTILISE JRNL TITL 2 D-RHAMNOSE CONTAINING LIPOPOLYSACCHARIDE AS A CELLULAR JRNL TITL 3 RECEPTOR. JRNL REF PLOS PATHOG. V. 10 03898 2014 JRNL REFN ISSN 1553-7366 JRNL PMID 24516380 JRNL DOI 10.1371/JOURNAL.PPAT.1003898 REMARK 2 REMARK 2 RESOLUTION. 2.37 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.7.0032 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.37 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 54.93 REMARK 3 DATA CUTOFF (SIGMA(F)) : 2.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.8 REMARK 3 NUMBER OF REFLECTIONS : 24888 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.211 REMARK 3 R VALUE (WORKING SET) : 0.209 REMARK 3 FREE R VALUE : 0.257 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1327 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.37 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.44 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1818 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.07 REMARK 3 BIN R VALUE (WORKING SET) : 0.3510 REMARK 3 BIN FREE R VALUE SET COUNT : 96 REMARK 3 BIN FREE R VALUE : 0.3440 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3970 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 77 REMARK 3 SOLVENT ATOMS : 84 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 43.62 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 54.16 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -2.08000 REMARK 3 B22 (A**2) : 2.35000 REMARK 3 B33 (A**2) : -0.27000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.362 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.255 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.181 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 14.595 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.945 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.919 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 4216 ; 0.015 ; 0.020 REMARK 3 BOND LENGTHS OTHERS (A): 3929 ; 0.002 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 5772 ; 1.686 ; 1.964 REMARK 3 BOND ANGLES OTHERS (DEGREES): 9061 ; 0.813 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 514 ; 8.299 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 180 ;33.384 ;24.722 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 646 ;16.224 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 13 ;22.155 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 649 ; 0.102 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 4743 ; 0.007 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 966 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2047 ; 2.253 ; 2.936 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 2046 ; 2.252 ; 2.936 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2564 ; 3.607 ; 4.398 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 2565 ; 3.607 ; 4.398 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 2169 ; 2.257 ; 3.176 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 2170 ; 2.256 ; 3.176 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 3208 ; 3.520 ; 4.681 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 4782 ; 6.349 ;24.108 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 4782 ; 6.350 ;24.108 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 2 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 12 A 115 REMARK 3 RESIDUE RANGE : A 228 A 255 REMARK 3 ORIGIN FOR THE GROUP (A): 40.0100 23.0830 25.6150 REMARK 3 T TENSOR REMARK 3 T11: 0.0653 T22: 0.2235 REMARK 3 T33: 0.1338 T12: 0.0715 REMARK 3 T13: 0.0035 T23: -0.0137 REMARK 3 L TENSOR REMARK 3 L11: 3.9910 L22: 0.0241 REMARK 3 L33: 3.7622 L12: 0.1482 REMARK 3 L13: 3.3267 L23: 0.0611 REMARK 3 S TENSOR REMARK 3 S11: 0.1680 S12: 0.2056 S13: -0.2122 REMARK 3 S21: -0.0108 S22: -0.0166 S23: 0.0290 REMARK 3 S31: 0.3222 S32: 0.6133 S33: -0.1514 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 116 A 227 REMARK 3 ORIGIN FOR THE GROUP (A): 19.8480 30.2610 7.5680 REMARK 3 T TENSOR REMARK 3 T11: 0.0021 T22: 0.0828 REMARK 3 T33: 0.0970 T12: -0.0053 REMARK 3 T13: 0.0010 T23: -0.0551 REMARK 3 L TENSOR REMARK 3 L11: 1.5358 L22: 0.7020 REMARK 3 L33: 3.6899 L12: -0.1260 REMARK 3 L13: 1.0163 L23: -0.5460 REMARK 3 S TENSOR REMARK 3 S11: -0.0235 S12: 0.0627 S13: 0.0084 REMARK 3 S21: 0.0029 S22: 0.0442 S23: -0.0965 REMARK 3 S31: -0.0438 S32: -0.1833 S33: -0.0207 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 2 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 12 B 115 REMARK 3 RESIDUE RANGE : B 228 B 253 REMARK 3 ORIGIN FOR THE GROUP (A): -9.1750 3.9430 -18.9700 REMARK 3 T TENSOR REMARK 3 T11: 0.4991 T22: 0.5284 REMARK 3 T33: 0.1859 T12: -0.4012 REMARK 3 T13: -0.0175 T23: 0.0014 REMARK 3 L TENSOR REMARK 3 L11: 4.1827 L22: 6.7893 REMARK 3 L33: 5.0389 L12: 3.9201 REMARK 3 L13: 0.4506 L23: 3.5447 REMARK 3 S TENSOR REMARK 3 S11: -0.6676 S12: 0.5509 S13: 0.1733 REMARK 3 S21: -0.4084 S22: 0.6381 S23: 0.1558 REMARK 3 S31: 0.9038 S32: -0.7273 S33: 0.0295 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 116 B 227 REMARK 3 ORIGIN FOR THE GROUP (A): 10.7490 23.0110 -11.3630 REMARK 3 T TENSOR REMARK 3 T11: 0.0740 T22: 0.1667 REMARK 3 T33: 0.1286 T12: 0.0731 REMARK 3 T13: -0.0359 T23: -0.1319 REMARK 3 L TENSOR REMARK 3 L11: 1.8457 L22: 2.6812 REMARK 3 L33: 2.1634 L12: 0.9838 REMARK 3 L13: -0.1331 L23: 0.0787 REMARK 3 S TENSOR REMARK 3 S11: 0.1358 S12: 0.2687 S13: -0.1942 REMARK 3 S21: -0.1279 S22: -0.0084 S23: -0.0021 REMARK 3 S31: 0.1496 S32: 0.0946 S33: -0.1275 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 4LED COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 16-JUL-13. REMARK 100 THE DEPOSITION ID IS D_1000080523. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I04 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9788 REMARK 200 MONOCHROMATOR : SILICON REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : PSI PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XIA2 REMARK 200 DATA SCALING SOFTWARE : XDS, AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 26242 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.370 REMARK 200 RESOLUTION RANGE LOW (A) : 54.930 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.1 REMARK 200 DATA REDUNDANCY : 4.400 REMARK 200 R MERGE (I) : 0.05900 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 19.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.37 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.43 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.5 REMARK 200 DATA REDUNDANCY IN SHELL : 4.50 REMARK 200 R MERGE FOR SHELL (I) : 0.83000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 2.100 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 4LE7 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 53.93 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.67 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 20% PEG 550 MME, 20% PEG 20K, 0.03 M REMARK 280 CACL2, 0.03 M MGCL2 0.1 M MOPS/HEPES, PH 7.5, VAPOR DIFFUSION, REMARK 280 SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 2 2 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -X,Y,-Z+1/2 REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 75.28500 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 75.28500 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 26.49500 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 80.32500 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 26.49500 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 80.32500 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 75.28500 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 26.49500 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 80.32500 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 75.28500 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 26.49500 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 80.32500 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 403 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 PRO A 256 REMARK 465 ARG A 257 REMARK 465 ARG A 258 REMARK 465 ARG A 259 REMARK 465 ALA A 260 REMARK 465 VAL A 261 REMARK 465 VAL A 262 REMARK 465 HIS A 263 REMARK 465 HIS A 264 REMARK 465 HIS A 265 REMARK 465 HIS A 266 REMARK 465 HIS A 267 REMARK 465 HIS A 268 REMARK 465 MET B 1 REMARK 465 ASP B 254 REMARK 465 TYR B 255 REMARK 465 PRO B 256 REMARK 465 ARG B 257 REMARK 465 ARG B 258 REMARK 465 ARG B 259 REMARK 465 ALA B 260 REMARK 465 VAL B 261 REMARK 465 VAL B 262 REMARK 465 HIS B 263 REMARK 465 HIS B 264 REMARK 465 HIS B 265 REMARK 465 HIS B 266 REMARK 465 HIS B 267 REMARK 465 HIS B 268 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ARG A 8 -1.23 68.80 REMARK 500 THR A 48 156.81 81.73 REMARK 500 GLU A 59 74.73 -153.14 REMARK 500 PHE A 60 -75.02 65.79 REMARK 500 ALA A 80 -72.29 -59.26 REMARK 500 TRP A 193 140.94 -170.40 REMARK 500 ASP A 254 -152.96 -132.99 REMARK 500 THR B 48 156.10 76.16 REMARK 500 GLU B 59 73.76 -150.36 REMARK 500 PHE B 60 -73.03 58.84 REMARK 500 THR B 79 132.55 173.58 REMARK 500 LEU B 82 8.29 -150.32 REMARK 500 TRP B 193 142.85 -177.64 REMARK 500 TRP B 222 142.67 -173.82 REMARK 500 PRO B 252 175.23 -59.99 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 PRO A 242 LEU A 243 148.54 REMARK 500 ASP B 244 THR B 245 -148.82 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4LE7 RELATED DB: PDB REMARK 900 PYOCIN L1 2.09 ANGSTROMS REMARK 900 RELATED ID: 4LEA RELATED DB: PDB REMARK 900 PYOCIN L1 BOUND TO D-MANNOSE 2.55 ANGSTROMS REMARK 900 RELATED ID: 4LED RELATED DB: PDB REMARK 900 PYOCIN L1 BOUND TO D-RHAMNOSE AT 2.37 ANGSTROMS DBREF 4LED A 1 268 PDB 4LED 4LED 1 268 DBREF 4LED B 1 268 PDB 4LED 4LED 1 268 SEQRES 1 A 268 MET ALA SER SER LEU ALA PRO ARG GLN VAL ILE ARG ASP SEQRES 2 A 268 GLY GLN PHE ILE THR SER PRO ASN GLY LYS TYR LYS LEU SEQRES 3 A 268 VAL MET GLN ALA ASP GLY ASN LEU VAL LEU TYR GLU ASP SEQRES 4 A 268 GLY THR LYS PRO ILE TRP ASN THR THR PRO VAL GLY PRO SEQRES 5 A 268 GLY ALA LYS ALA VAL MET GLU PHE ASN LEU ASN LEU TYR SEQRES 6 A 268 ASN LYS ALA GLY GLN VAL ALA TRP SER SER ASN VAL TYR SEQRES 7 A 268 THR ALA TYR LEU PHE GLU GLU PHE LYS ASP GLU ALA TYR SEQRES 8 A 268 LEU ASN LEU GLN ASP ASP GLY ASP PHE GLY ILE PHE SER SEQRES 9 A 268 ASP GLU ALA LYS TRP GLY SER ILE VAL LEU SER ARG PRO SEQRES 10 A 268 GLU VAL GLY VAL LYS ASN LYS ILE ILE PRO THR GLY THR SEQRES 11 A 268 VAL MET VAL PRO GLY THR GLU TYR ILE ASN GLY ASN TYR SEQRES 12 A 268 ARG LEU ALA PHE GLN GLY ASP GLY ASN LEU VAL ILE TYR SEQRES 13 A 268 GLN ILE ASN PRO GLN VAL VAL ILE TRP ALA THR TYR THR SEQRES 14 A 268 MET GLY ALA ASP ARG ALA VAL VAL GLN GLU ASP GLY ASN SEQRES 15 A 268 PHE VAL ILE TYR LYS GLY THR THR ALA LEU TRP HIS THR SEQRES 16 A 268 HIS THR ALA THR GLY MET PRO ALA TYR LEU LYS PHE THR SEQRES 17 A 268 ASN THR GLY LYS LEU PHE LEU SER GLN PRO THR LEU LEU SEQRES 18 A 268 TRP THR LEU LYS ARG GLY SER LEU SER LYS PRO PRO LYS SEQRES 19 A 268 VAL ILE PRO GLY GLN HIS GLY PRO LEU ASP THR THR PRO SEQRES 20 A 268 ILE TRP SER TRP PRO HIS ASP TYR PRO ARG ARG ARG ALA SEQRES 21 A 268 VAL VAL HIS HIS HIS HIS HIS HIS SEQRES 1 B 268 MET ALA SER SER LEU ALA PRO ARG GLN VAL ILE ARG ASP SEQRES 2 B 268 GLY GLN PHE ILE THR SER PRO ASN GLY LYS TYR LYS LEU SEQRES 3 B 268 VAL MET GLN ALA ASP GLY ASN LEU VAL LEU TYR GLU ASP SEQRES 4 B 268 GLY THR LYS PRO ILE TRP ASN THR THR PRO VAL GLY PRO SEQRES 5 B 268 GLY ALA LYS ALA VAL MET GLU PHE ASN LEU ASN LEU TYR SEQRES 6 B 268 ASN LYS ALA GLY GLN VAL ALA TRP SER SER ASN VAL TYR SEQRES 7 B 268 THR ALA TYR LEU PHE GLU GLU PHE LYS ASP GLU ALA TYR SEQRES 8 B 268 LEU ASN LEU GLN ASP ASP GLY ASP PHE GLY ILE PHE SER SEQRES 9 B 268 ASP GLU ALA LYS TRP GLY SER ILE VAL LEU SER ARG PRO SEQRES 10 B 268 GLU VAL GLY VAL LYS ASN LYS ILE ILE PRO THR GLY THR SEQRES 11 B 268 VAL MET VAL PRO GLY THR GLU TYR ILE ASN GLY ASN TYR SEQRES 12 B 268 ARG LEU ALA PHE GLN GLY ASP GLY ASN LEU VAL ILE TYR SEQRES 13 B 268 GLN ILE ASN PRO GLN VAL VAL ILE TRP ALA THR TYR THR SEQRES 14 B 268 MET GLY ALA ASP ARG ALA VAL VAL GLN GLU ASP GLY ASN SEQRES 15 B 268 PHE VAL ILE TYR LYS GLY THR THR ALA LEU TRP HIS THR SEQRES 16 B 268 HIS THR ALA THR GLY MET PRO ALA TYR LEU LYS PHE THR SEQRES 17 B 268 ASN THR GLY LYS LEU PHE LEU SER GLN PRO THR LEU LEU SEQRES 18 B 268 TRP THR LEU LYS ARG GLY SER LEU SER LYS PRO PRO LYS SEQRES 19 B 268 VAL ILE PRO GLY GLN HIS GLY PRO LEU ASP THR THR PRO SEQRES 20 B 268 ILE TRP SER TRP PRO HIS ASP TYR PRO ARG ARG ARG ALA SEQRES 21 B 268 VAL VAL HIS HIS HIS HIS HIS HIS HET XXR A 301 11 HET XXR A 302 11 HET XXR A 303 11 HET XXR B 301 11 HET XXR B 302 11 HET XXR B 303 11 HET XXR B 304 11 HETNAM XXR ALPHA-D-RHAMNOPYRANOSE HETSYN XXR ALPHA-D-RHAMNOSE; 6-DEOXY-ALPHA-D-MANNOPYRANOSE; D- HETSYN 2 XXR RHAMNOSE; RHAMNOSE FORMUL 3 XXR 7(C6 H12 O5) FORMUL 10 HOH *84(H2 O) HELIX 1 1 GLU A 85 ALA A 90 1 6 HELIX 2 2 PHE B 83 ASP B 88 1 6 SHEET 1 A 5 SER A 4 LEU A 5 0 SHEET 2 A 5 TYR A 91 LEU A 94 -1 O LEU A 92 N LEU A 5 SHEET 3 A 5 PHE A 100 PHE A 103 -1 O PHE A 103 N TYR A 91 SHEET 4 A 5 LEU A 220 THR A 223 -1 O TRP A 222 N ILE A 102 SHEET 5 A 5 GLY A 227 SER A 228 -1 O GLY A 227 N THR A 223 SHEET 1 B 4 VAL A 10 ILE A 11 0 SHEET 2 B 4 LYS A 55 MET A 58 -1 O ALA A 56 N ILE A 11 SHEET 3 B 4 LEU A 62 TYR A 65 -1 O TYR A 65 N LYS A 55 SHEET 4 B 4 VAL A 71 SER A 74 -1 O ALA A 72 N LEU A 64 SHEET 1 C 4 GLN A 15 THR A 18 0 SHEET 2 C 4 TYR A 24 MET A 28 -1 O LEU A 26 N ILE A 17 SHEET 3 C 4 LEU A 34 GLU A 38 -1 O TYR A 37 N LYS A 25 SHEET 4 C 4 LYS A 42 ASN A 46 -1 O ILE A 44 N LEU A 36 SHEET 1 D 4 TRP A 109 GLY A 110 0 SHEET 2 D 4 LEU A 213 SER A 216 -1 O LEU A 215 N TRP A 109 SHEET 3 D 4 TYR A 204 THR A 208 -1 N LYS A 206 O PHE A 214 SHEET 4 D 4 ASN A 123 ILE A 126 -1 N ILE A 126 O LEU A 205 SHEET 1 E 4 VAL A 131 MET A 132 0 SHEET 2 E 4 ARG A 174 VAL A 177 -1 O ALA A 175 N MET A 132 SHEET 3 E 4 PHE A 183 LYS A 187 -1 O TYR A 186 N ARG A 174 SHEET 4 E 4 THR A 190 HIS A 194 -1 O THR A 190 N LYS A 187 SHEET 1 F 4 GLU A 137 ASN A 140 0 SHEET 2 F 4 TYR A 143 PHE A 147 -1 O LEU A 145 N TYR A 138 SHEET 3 F 4 LEU A 153 GLN A 157 -1 O VAL A 154 N ALA A 146 SHEET 4 F 4 VAL A 162 ALA A 166 -1 O ILE A 164 N ILE A 155 SHEET 1 G 2 ILE A 236 PRO A 237 0 SHEET 2 G 2 TRP A 249 SER A 250 -1 O SER A 250 N ILE A 236 SHEET 1 H 5 SER B 4 LEU B 5 0 SHEET 2 H 5 TYR B 91 LEU B 94 -1 O LEU B 92 N LEU B 5 SHEET 3 H 5 PHE B 100 PHE B 103 -1 O PHE B 103 N TYR B 91 SHEET 4 H 5 LEU B 220 THR B 223 -1 O LEU B 221 N ILE B 102 SHEET 5 H 5 GLY B 227 SER B 228 -1 O GLY B 227 N THR B 223 SHEET 1 I 4 VAL B 10 ILE B 11 0 SHEET 2 I 4 LYS B 55 MET B 58 -1 O ALA B 56 N ILE B 11 SHEET 3 I 4 LEU B 62 TYR B 65 -1 O TYR B 65 N LYS B 55 SHEET 4 I 4 VAL B 71 SER B 74 -1 O ALA B 72 N LEU B 64 SHEET 1 J 4 GLN B 15 THR B 18 0 SHEET 2 J 4 TYR B 24 MET B 28 -1 O MET B 28 N GLN B 15 SHEET 3 J 4 LEU B 34 GLU B 38 -1 O VAL B 35 N VAL B 27 SHEET 4 J 4 LYS B 42 ASN B 46 -1 O LYS B 42 N GLU B 38 SHEET 1 K 4 ALA B 107 GLY B 110 0 SHEET 2 K 4 LEU B 213 SER B 216 -1 O LEU B 215 N LYS B 108 SHEET 3 K 4 TYR B 204 THR B 208 -1 N LYS B 206 O PHE B 214 SHEET 4 K 4 ASN B 123 ILE B 126 -1 N LYS B 124 O PHE B 207 SHEET 1 L 4 VAL B 131 MET B 132 0 SHEET 2 L 4 ARG B 174 VAL B 177 -1 O ALA B 175 N MET B 132 SHEET 3 L 4 PHE B 183 LYS B 187 -1 O TYR B 186 N ARG B 174 SHEET 4 L 4 THR B 190 HIS B 194 -1 O LEU B 192 N ILE B 185 SHEET 1 M 4 THR B 136 ASN B 140 0 SHEET 2 M 4 TYR B 143 PHE B 147 -1 O LEU B 145 N TYR B 138 SHEET 3 M 4 LEU B 153 GLN B 157 -1 O VAL B 154 N ALA B 146 SHEET 4 M 4 VAL B 162 ALA B 166 -1 O ILE B 164 N ILE B 155 SHEET 1 N 2 ILE B 236 PRO B 237 0 SHEET 2 N 2 TRP B 249 SER B 250 -1 O SER B 250 N ILE B 236 CISPEP 1 ASN A 159 PRO A 160 0 -12.08 CISPEP 2 ASN B 159 PRO B 160 0 -12.37 CRYST1 52.990 160.650 150.570 90.00 90.00 90.00 C 2 2 21 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.018871 0.000000 0.000000 0.00000 SCALE2 0.000000 0.006225 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006641 0.00000