HEADER TRANSFERASE 26-JUN-13 4LFG TITLE CRYSTAL STRUCTURE OF GERANYLGERANYL DIPHOSPHATE SYNTHASE SUB1274 TITLE 2 (TARGET EFI-509455) FROM STREPTOCOCCUS UBERIS 0140J WITH BOUND TITLE 3 MAGNESIUM AND ISOPENTYL DIPHOSPHATE, FULLY LIGANDED COMPLEX; COMPND MOL_ID: 1; COMPND 2 MOLECULE: GERANYLGERANYL DIPHOSPHATE SYNTHASE; COMPND 3 CHAIN: A, B; COMPND 4 EC: 2.5.1.10; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: STREPTOCOCCUS UBERIS; SOURCE 3 ORGANISM_TAXID: 218495; SOURCE 4 STRAIN: 0140J; SOURCE 5 GENE: FPS, SUB1274; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3) RIL KEYWDS ISOPRENOID SYNTHASE, ENZYME FUNCTION INITIATIVE, EFI, TRANSF, KEYWDS 2 TRANSFERASE, STRUCTURAL GENOMICS EXPDTA X-RAY DIFFRACTION AUTHOR Y.PATSKOVSKY,R.TORO,R.BHOSLE,B.HILLERICH,R.D.SEIDEL,E.WASHINGTON, AUTHOR 2 A.SCOTT GLENN,S.CHOWDHURY,B.EVANS,J.HAMMONDS,H.J.IMKER,N.AL OBAIDI, AUTHOR 3 M.STEAD,J.LOVE,C.D.POULTER,J.A.GERLT,S.C.ALMO,ENZYME FUNCTION AUTHOR 4 INITIATIVE (EFI) REVDAT 3 20-SEP-23 4LFG 1 REMARK SEQADV LINK REVDAT 2 24-JAN-18 4LFG 1 AUTHOR REVDAT 1 10-JUL-13 4LFG 0 JRNL AUTH Y.PATSKOVSKY,R.TORO,R.BHOSLE,B.HILLERICH,R.D.SEIDEL, JRNL AUTH 2 E.WASHINGTON,A.SCOTT GLENN,S.CHOWDHURY,B.EVANS,J.HAMMONDS, JRNL AUTH 3 H.J.IMKER,N.AL OBAIDI,M.STEAD,J.LOVE,C.D.POULTER,J.A.GERLT, JRNL AUTH 4 S.C.ALMO JRNL TITL CRYSTAL STRUCTURE OF GERANYLGERANYL DIPHOSPHATE SYNTHASE JRNL TITL 2 FROM STREPTOCOCCUS UBERIS 0140J JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.76 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.7.0029 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.76 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 46.67 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 3 NUMBER OF REFLECTIONS : 63151 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.154 REMARK 3 R VALUE (WORKING SET) : 0.153 REMARK 3 FREE R VALUE : 0.184 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 3.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1973 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.76 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.81 REMARK 3 REFLECTION IN BIN (WORKING SET) : 4554 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 98.51 REMARK 3 BIN R VALUE (WORKING SET) : 0.2230 REMARK 3 BIN FREE R VALUE SET COUNT : 140 REMARK 3 BIN FREE R VALUE : 0.2610 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4520 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 62 REMARK 3 SOLVENT ATOMS : 538 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 17.70 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 25.16 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.26000 REMARK 3 B22 (A**2) : 1.97000 REMARK 3 B33 (A**2) : -1.72000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.096 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.094 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.063 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 2.004 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.969 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.963 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 4785 ; 0.008 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 4690 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 6466 ; 1.228 ; 1.994 REMARK 3 BOND ANGLES OTHERS (DEGREES): 10828 ; 0.757 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 613 ; 4.442 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 214 ;36.763 ;25.327 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 890 ;13.184 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 22 ;14.211 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 741 ; 0.068 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 5353 ; 0.005 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 1017 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 4LFG COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 27-JUN-13. REMARK 100 THE DEPOSITION ID IS D_1000080562. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 18-APR-13 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : NULL REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : NSLS REMARK 200 BEAMLINE : X29A REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.075 REMARK 200 MONOCHROMATOR : ROSENBAUM-ROCK DOUBLE CRYSTAL REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 65193 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.760 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -5.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.3 REMARK 200 DATA REDUNDANCY : 6.100 REMARK 200 R MERGE (I) : 0.10700 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 8.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.76 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.79 REMARK 200 COMPLETENESS FOR SHELL (%) : 89.8 REMARK 200 DATA REDUNDANCY IN SHELL : 5.60 REMARK 200 R MERGE FOR SHELL (I) : 0.66500 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 2.800 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 4GP1 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 51.28 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.52 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2M MAGNESIUM CHLORIDE, 0.1M MES REMARK 280 -NAOH, PH 6.5, 25% PEG4000, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 35.19250 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 62.23650 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 37.16300 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 62.23650 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 35.19250 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 37.16300 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4350 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 22490 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -49.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER B 0 REMARK 465 MET B 1 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 MET A 83 -113.03 -103.48 REMARK 500 PHE A 99 -107.06 -112.79 REMARK 500 MET B 83 -110.04 -106.79 REMARK 500 PHE B 99 -102.81 -115.87 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 303 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 78 OD1 REMARK 620 2 ASP A 84 OD2 87.8 REMARK 620 3 IPE A 301 O1A 96.4 81.5 REMARK 620 4 HOH A 431 O 176.7 91.5 86.6 REMARK 620 5 HOH A 490 O 93.3 175.3 93.8 87.6 REMARK 620 6 HOH A 495 O 87.9 92.5 172.5 89.0 92.1 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 304 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 78 OD2 REMARK 620 2 ASP A 84 OD2 87.4 REMARK 620 3 IPE A 301 O2B 96.4 169.9 REMARK 620 4 IPE A 301 O1A 94.6 81.7 88.6 REMARK 620 5 HOH A 415 O 168.0 89.1 89.0 96.2 REMARK 620 6 HOH A 422 O 81.3 100.6 89.3 175.1 88.1 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 305 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 213 OD2 REMARK 620 2 ASP A 217 OD2 110.9 REMARK 620 3 IPE A 301 O1B 118.4 117.4 REMARK 620 4 HOH A 507 O 157.8 65.7 80.0 REMARK 620 5 HOH A 577 O 94.5 39.8 98.9 94.7 REMARK 620 6 HOH A 578 O 82.3 77.5 142.4 75.6 111.1 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG B 304 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP B 78 OD1 REMARK 620 2 ASP B 84 OD2 86.1 REMARK 620 3 IPE B 301 O1A 96.6 77.6 REMARK 620 4 HOH B 444 O 92.4 174.7 97.5 REMARK 620 5 HOH B 493 O 86.3 97.1 173.7 87.9 REMARK 620 6 HOH B 557 O 172.6 92.9 90.4 89.2 86.5 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG B 305 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP B 78 OD2 REMARK 620 2 ASP B 84 OD2 87.4 REMARK 620 3 IPE B 301 O3B 96.4 169.6 REMARK 620 4 IPE B 301 O1A 93.2 77.8 92.3 REMARK 620 5 HOH B 408 O 172.0 89.7 87.8 93.4 REMARK 620 6 HOH B 411 O 84.9 102.9 87.2 177.9 88.6 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG B 303 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP B 213 OD2 REMARK 620 2 IPE B 301 O2B 99.7 REMARK 620 3 IPE B 301 O2A 89.4 87.3 REMARK 620 4 HOH B 406 O 173.6 86.7 91.5 REMARK 620 5 HOH B 604 O 91.4 87.2 174.5 88.3 REMARK 620 6 HOH B 605 O 89.7 170.1 89.7 84.0 95.8 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE IPE A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE IPE A 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 303 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 304 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 305 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE IPE B 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE IPE B 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG B 303 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG B 304 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG B 305 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4LFE RELATED DB: PDB REMARK 900 THE SAME PROTEIN, PARTIALLY LIGANDED STRUCTURE REMARK 900 RELATED ID: EFI-509455 RELATED DB: TARGETTRACK DBREF 4LFG A 1 289 UNP B9DUT7 B9DUT7_STRU0 1 289 DBREF 4LFG B 1 289 UNP B9DUT7 B9DUT7_STRU0 1 289 SEQADV 4LFG SER A 0 UNP B9DUT7 EXPRESSION TAG SEQADV 4LFG SER B 0 UNP B9DUT7 EXPRESSION TAG SEQRES 1 A 290 SER MET ASP LYS LEU LYS LYS ILE ASP GLN THR ILE HIS SEQRES 2 A 290 ALA PHE TYR CYS GLU LYS ALA VAL ILE SER GLU LYS LEU SEQRES 3 A 290 ASN GLU ALA VAL LEU TYR SER ILE ASN ALA GLY GLY LYS SEQRES 4 A 290 ARG ILE ARG PRO ILE LEU PHE LEU GLU VAL ILE GLU ALA SEQRES 5 A 290 LEU GLN ILE PRO LEU THR GLU SER HIS PHE LYS ALA ALA SEQRES 6 A 290 ALA ALA LEU GLU MET ILE HIS THR GLY SER LEU ILE HIS SEQRES 7 A 290 ASP ASP LEU PRO ALA MET ASP ASN ASP ASP TYR ARG ARG SEQRES 8 A 290 GLY GLN LEU THR ASN HIS LYS LYS PHE ASP GLU ALA THR SEQRES 9 A 290 ALA ILE LEU ALA GLY ASP SER LEU PHE LEU ASP ALA PHE SEQRES 10 A 290 GLY MET LEU ALA GLU THR ASP PHE PRO THR ASP VAL THR SEQRES 11 A 290 VAL ASP LEU VAL ARG SER LEU SER SER ALA SER GLY THR SEQRES 12 A 290 PHE GLY MET VAL GLY GLY GLN MET LEU ASP MET ALA ALA SEQRES 13 A 290 GLU GLY LYS LYS LEU ASN LEU LYS ASN LEU GLN LEU ILE SEQRES 14 A 290 HIS ARG HIS LYS THR GLY GLN LEU LEU ALA TYR PRO PHE SEQRES 15 A 290 TRP ALA ALA ALA ARG VAL ALA GLN LEU ASP GLU ASN LEU SEQRES 16 A 290 LEU ALA THR PHE LEU GLU ILE GLY MET ILE ILE GLY LEU SEQRES 17 A 290 ALA PHE GLN VAL ARG ASP ASP ILE LEU ASP ILE THR ALA SEQRES 18 A 290 ASN PHE GLU GLU ILE GLY LYS THR PRO LYS LYS ASP VAL SEQRES 19 A 290 MET ALA GLU LYS MET THR TYR PRO HIS LEU LEU GLY LEU SEQRES 20 A 290 ASN GLU SER TYR GLN ILE LEU ASP GLU SER LEU ASP GLN SEQRES 21 A 290 ALA GLU ALA ILE LEU ARG LYS LEU SER ASP GLU ILE ALA SEQRES 22 A 290 PHE ALA PRO GLN LYS ILE LEU SER LEU ILE GLU ARG LEU SEQRES 23 A 290 ARG LEU ASP ALA SEQRES 1 B 290 SER MET ASP LYS LEU LYS LYS ILE ASP GLN THR ILE HIS SEQRES 2 B 290 ALA PHE TYR CYS GLU LYS ALA VAL ILE SER GLU LYS LEU SEQRES 3 B 290 ASN GLU ALA VAL LEU TYR SER ILE ASN ALA GLY GLY LYS SEQRES 4 B 290 ARG ILE ARG PRO ILE LEU PHE LEU GLU VAL ILE GLU ALA SEQRES 5 B 290 LEU GLN ILE PRO LEU THR GLU SER HIS PHE LYS ALA ALA SEQRES 6 B 290 ALA ALA LEU GLU MET ILE HIS THR GLY SER LEU ILE HIS SEQRES 7 B 290 ASP ASP LEU PRO ALA MET ASP ASN ASP ASP TYR ARG ARG SEQRES 8 B 290 GLY GLN LEU THR ASN HIS LYS LYS PHE ASP GLU ALA THR SEQRES 9 B 290 ALA ILE LEU ALA GLY ASP SER LEU PHE LEU ASP ALA PHE SEQRES 10 B 290 GLY MET LEU ALA GLU THR ASP PHE PRO THR ASP VAL THR SEQRES 11 B 290 VAL ASP LEU VAL ARG SER LEU SER SER ALA SER GLY THR SEQRES 12 B 290 PHE GLY MET VAL GLY GLY GLN MET LEU ASP MET ALA ALA SEQRES 13 B 290 GLU GLY LYS LYS LEU ASN LEU LYS ASN LEU GLN LEU ILE SEQRES 14 B 290 HIS ARG HIS LYS THR GLY GLN LEU LEU ALA TYR PRO PHE SEQRES 15 B 290 TRP ALA ALA ALA ARG VAL ALA GLN LEU ASP GLU ASN LEU SEQRES 16 B 290 LEU ALA THR PHE LEU GLU ILE GLY MET ILE ILE GLY LEU SEQRES 17 B 290 ALA PHE GLN VAL ARG ASP ASP ILE LEU ASP ILE THR ALA SEQRES 18 B 290 ASN PHE GLU GLU ILE GLY LYS THR PRO LYS LYS ASP VAL SEQRES 19 B 290 MET ALA GLU LYS MET THR TYR PRO HIS LEU LEU GLY LEU SEQRES 20 B 290 ASN GLU SER TYR GLN ILE LEU ASP GLU SER LEU ASP GLN SEQRES 21 B 290 ALA GLU ALA ILE LEU ARG LYS LEU SER ASP GLU ILE ALA SEQRES 22 B 290 PHE ALA PRO GLN LYS ILE LEU SER LEU ILE GLU ARG LEU SEQRES 23 B 290 ARG LEU ASP ALA HET IPE A 301 14 HET IPE A 302 14 HET MG A 303 1 HET MG A 304 1 HET MG A 305 1 HET IPE B 301 14 HET IPE B 302 14 HET MG B 303 1 HET MG B 304 1 HET MG B 305 1 HETNAM IPE 3-METHYLBUT-3-ENYL TRIHYDROGEN DIPHOSPHATE HETNAM MG MAGNESIUM ION HETSYN IPE ISOPENTENYL PYROPHOSPHATE FORMUL 3 IPE 4(C5 H12 O7 P2) FORMUL 5 MG 6(MG 2+) FORMUL 13 HOH *538(H2 O) HELIX 1 1 ASP A 2 GLU A 17 1 16 HELIX 2 2 SER A 22 GLY A 36 1 15 HELIX 3 3 ARG A 39 LEU A 52 1 14 HELIX 4 4 THR A 57 ASP A 79 1 23 HELIX 5 5 THR A 94 PHE A 99 1 6 HELIX 6 6 ASP A 100 ALA A 120 1 21 HELIX 7 7 PRO A 125 GLY A 141 1 17 HELIX 8 8 GLY A 144 ALA A 155 1 12 HELIX 9 9 ASN A 161 THR A 173 1 13 HELIX 10 10 THR A 173 ALA A 188 1 16 HELIX 11 11 ASP A 191 ALA A 220 1 30 HELIX 12 12 ASN A 221 GLY A 226 1 6 HELIX 13 13 LYS A 230 ALA A 235 1 6 HELIX 14 14 THR A 239 GLY A 245 1 7 HELIX 15 15 GLY A 245 ASP A 269 1 25 HELIX 16 16 PRO A 275 LEU A 285 1 11 HELIX 17 17 LYS B 3 GLU B 17 1 15 HELIX 18 18 SER B 22 GLY B 36 1 15 HELIX 19 19 ARG B 39 LEU B 52 1 14 HELIX 20 20 THR B 57 ASP B 79 1 23 HELIX 21 21 THR B 94 PHE B 99 1 6 HELIX 22 22 ASP B 100 GLU B 121 1 22 HELIX 23 23 PRO B 125 GLY B 141 1 17 HELIX 24 24 GLY B 144 ALA B 155 1 12 HELIX 25 25 ASN B 161 THR B 173 1 13 HELIX 26 26 THR B 173 ALA B 188 1 16 HELIX 27 27 ASP B 191 ALA B 220 1 30 HELIX 28 28 ASN B 221 GLY B 226 1 6 HELIX 29 29 LYS B 230 ALA B 235 1 6 HELIX 30 30 THR B 239 GLY B 245 1 7 HELIX 31 31 GLY B 245 ILE B 271 1 27 HELIX 32 32 PRO B 275 LEU B 285 1 11 SHEET 1 A 2 TYR A 88 ARG A 89 0 SHEET 2 A 2 GLN A 92 LEU A 93 -1 O GLN A 92 N ARG A 89 SHEET 1 B 2 TYR B 88 ARG B 89 0 SHEET 2 B 2 GLN B 92 LEU B 93 -1 O GLN B 92 N ARG B 89 LINK OD1 ASP A 78 MG MG A 303 1555 1555 2.07 LINK OD2 ASP A 78 MG MG A 304 1555 1555 2.06 LINK OD2 ASP A 84 MG MG A 303 1555 1555 2.07 LINK OD2 ASP A 84 MG MG A 304 1555 1555 2.07 LINK OD2 ASP A 213 MG MG A 305 1555 1555 2.07 LINK OD2AASP A 217 MG MG A 305 1555 1555 2.07 LINK O1A IPE A 301 MG MG A 303 1555 1555 2.07 LINK O2B IPE A 301 MG MG A 304 1555 1555 2.05 LINK O1A IPE A 301 MG MG A 304 1555 1555 2.07 LINK O1B IPE A 301 MG MG A 305 1555 1555 2.07 LINK MG MG A 303 O HOH A 431 1555 1555 2.20 LINK MG MG A 303 O HOH A 490 1555 1555 2.12 LINK MG MG A 303 O HOH A 495 1555 1555 2.08 LINK MG MG A 304 O HOH A 415 1555 1555 2.14 LINK MG MG A 304 O HOH A 422 1555 1555 2.22 LINK MG MG A 305 O HOH A 507 1555 1555 2.36 LINK MG MG A 305 O BHOH A 577 1555 1555 1.76 LINK MG MG A 305 O HOH A 578 1555 1555 2.24 LINK OD1 ASP B 78 MG MG B 304 1555 1555 2.09 LINK OD2 ASP B 78 MG MG B 305 1555 1555 2.06 LINK OD2 ASP B 84 MG MG B 304 1555 1555 2.08 LINK OD2 ASP B 84 MG MG B 305 1555 1555 2.07 LINK OD2 ASP B 213 MG MG B 303 1555 1555 2.07 LINK O2B IPE B 301 MG MG B 303 1555 1555 2.06 LINK O2A IPE B 301 MG MG B 303 1555 1555 2.10 LINK O1A IPE B 301 MG MG B 304 1555 1555 2.08 LINK O3B IPE B 301 MG MG B 305 1555 1555 2.05 LINK O1A IPE B 301 MG MG B 305 1555 1555 2.09 LINK MG MG B 303 O HOH B 406 1555 1555 2.19 LINK MG MG B 303 O HOH B 604 1555 1555 2.17 LINK MG MG B 303 O HOH B 605 1555 1555 2.11 LINK MG MG B 304 O HOH B 444 1555 1555 2.09 LINK MG MG B 304 O HOH B 493 1555 1555 2.15 LINK MG MG B 304 O HOH B 557 1555 1555 2.19 LINK MG MG B 305 O HOH B 408 1555 1555 2.12 LINK MG MG B 305 O HOH B 411 1555 1555 2.18 SITE 1 AC1 22 ASP A 78 ASP A 84 ARG A 89 GLN A 149 SITE 2 AC1 22 LYS A 172 THR A 173 ASP A 213 ASP A 217 SITE 3 AC1 22 LYS A 227 IPE A 302 MG A 303 MG A 304 SITE 4 AC1 22 MG A 305 HOH A 415 HOH A 422 HOH A 431 SITE 5 AC1 22 HOH A 490 HOH A 507 HOH A 577 HOH A 578 SITE 6 AC1 22 HOH A 580 HOH A 639 SITE 1 AC2 17 GLY A 37 LYS A 38 ARG A 41 HIS A 71 SITE 2 AC2 17 LEU A 75 ARG A 90 THR A 173 PHE A 209 SITE 3 AC2 17 GLN A 210 ASP A 213 IPE A 301 HOH A 404 SITE 4 AC2 17 HOH A 406 HOH A 409 HOH A 410 HOH A 412 SITE 5 AC2 17 HOH A 579 SITE 1 AC3 7 ASP A 78 ASP A 84 IPE A 301 MG A 304 SITE 2 AC3 7 HOH A 431 HOH A 490 HOH A 495 SITE 1 AC4 6 ASP A 78 ASP A 84 IPE A 301 MG A 303 SITE 2 AC4 6 HOH A 415 HOH A 422 SITE 1 AC5 6 ASP A 213 ASP A 217 IPE A 301 HOH A 507 SITE 2 AC5 6 HOH A 577 HOH A 578 SITE 1 AC6 21 ASP B 78 ASP B 84 ARG B 89 LYS B 172 SITE 2 AC6 21 THR B 173 GLN B 210 ASP B 213 LYS B 227 SITE 3 AC6 21 IPE B 302 MG B 303 MG B 304 MG B 305 SITE 4 AC6 21 HOH B 406 HOH B 408 HOH B 411 HOH B 444 SITE 5 AC6 21 HOH B 446 HOH B 447 HOH B 557 HOH B 604 SITE 6 AC6 21 HOH B 605 SITE 1 AC7 17 GLY B 37 LYS B 38 ARG B 41 HIS B 71 SITE 2 AC7 17 LEU B 75 ARG B 90 THR B 173 PHE B 209 SITE 3 AC7 17 GLN B 210 ASP B 213 IPE B 301 HOH B 404 SITE 4 AC7 17 HOH B 405 HOH B 409 HOH B 416 HOH B 419 SITE 5 AC7 17 HOH B 497 SITE 1 AC8 5 ASP B 213 IPE B 301 HOH B 406 HOH B 604 SITE 2 AC8 5 HOH B 605 SITE 1 AC9 7 ASP B 78 ASP B 84 IPE B 301 MG B 305 SITE 2 AC9 7 HOH B 444 HOH B 493 HOH B 557 SITE 1 BC1 6 ASP B 78 ASP B 84 IPE B 301 MG B 304 SITE 2 BC1 6 HOH B 408 HOH B 411 CRYST1 70.385 74.326 124.473 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.014208 0.000000 0.000000 0.00000 SCALE2 0.000000 0.013454 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008034 0.00000 MTRIX1 1 1.000000 0.000000 0.000000 0.00000 1 MTRIX2 1 0.000000 1.000000 0.000000 0.00000 1 MTRIX3 1 0.000000 0.000000 1.000000 0.00000 1 MTRIX1 2 -0.811479 -0.279687 -0.513105 117.41856 1 MTRIX2 2 -0.294439 -0.562753 0.772408 112.95716 1 MTRIX3 2 -0.504784 0.777871 0.374312 -20.21493 1