HEADER CELL ADHESION 01-JUL-13 4LHK TITLE STRUCTURE OF THE N-TERMINAL DOMAIN OF THE LG-FLO1 ADHESIN (N-LG-FLO1P) TITLE 2 FROM THE YEAST SACCHAROMYCES PASTORIANUS, IN COMPLEX WITH CALCIUM AND TITLE 3 ALPHA-1,2-MANNOBIOSE COMPND MOL_ID: 1; COMPND 2 MOLECULE: FLOCCULIN; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: N-TERMINAL DOMAIN,UNP RESIDUES 23-213; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SACCHAROMYCES PASTORIANUS; SOURCE 3 ORGANISM_COMMON: LAGER YEAST; SOURCE 4 ORGANISM_TAXID: 27292; SOURCE 5 STRAIN: CBS1513; SOURCE 6 GENE: LG-FLO1; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 9 EXPRESSION_SYSTEM_STRAIN: ORIGAMI 2 (DE3); SOURCE 10 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 11 EXPRESSION_SYSTEM_PLASMID: PET-21B(+) KEYWDS PA14 DOMAIN, CELL ADHESION EXPDTA X-RAY DIFFRACTION AUTHOR F.S.IELASI,R.G.WILLAERT REVDAT 7 20-SEP-23 4LHK 1 HETSYN REVDAT 6 29-JUL-20 4LHK 1 COMPND REMARK SEQADV HETNAM REVDAT 6 2 1 LINK SITE ATOM REVDAT 5 08-JUN-16 4LHK 1 JRNL REVDAT 4 02-DEC-15 4LHK 1 JRNL REVDAT 3 03-JUN-15 4LHK 1 JRNL REVDAT 2 06-MAY-15 4LHK 1 JRNL REVDAT 1 24-SEP-14 4LHK 0 JRNL AUTH K.V.GOOSSENS,F.S.IELASI,I.NOOKAEW,I.STALS,L.ALONSO-SARDUY, JRNL AUTH 2 L.DAENEN,S.E.VAN MULDERS,C.STASSEN,R.G.VAN EIJSDEN, JRNL AUTH 3 V.SIEWERS,F.R.DELVAUX,S.KASAS,J.NIELSEN,B.DEVREESE, JRNL AUTH 4 R.G.WILLAERT JRNL TITL MOLECULAR MECHANISM OF FLOCCULATION SELF-RECOGNITION IN JRNL TITL 2 YEAST AND ITS ROLE IN MATING AND SURVIVAL. JRNL REF MBIO V. 6 27-15 2015 JRNL REFN ESSN 2150-7511 JRNL PMID 25873380 JRNL DOI 10.1128/MBIO.00427-15 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH F.S.IELASI,P.GOYAL,M.SLEUTEL,A.WOHLKONIG,R.G.WILLAERT REMARK 1 TITL THE MANNOSE-SPECIFIC LECTIN DOMAINS OF FLO1P FROM REMARK 1 TITL 2 SACCHAROMYCES CEREVISIAE AND LG-FLO1P FROM S. PASTORIANUS: REMARK 1 TITL 3 CRYSTALLIZATION AND PRELIMINARY X-RAY DIFFRACTION ANALYSIS REMARK 1 TITL 4 OF THE ADHESIN-CARBOHYDRATE COMPLEXES. REMARK 1 REF ACTA CRYSTALLOGR.,SECT.F V. 69 779 2013 REMARK 1 REFN ESSN 1744-3091 REMARK 1 PMID 23832207 REMARK 1 DOI 10.1107/S1744309113015030 REMARK 2 REMARK 2 RESOLUTION. 1.73 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.7.0029 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.73 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 35.13 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 97.1 REMARK 3 NUMBER OF REFLECTIONS : 42548 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.140 REMARK 3 R VALUE (WORKING SET) : 0.137 REMARK 3 FREE R VALUE : 0.193 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 2275 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.73 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.78 REMARK 3 REFLECTION IN BIN (WORKING SET) : 3089 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 95.70 REMARK 3 BIN R VALUE (WORKING SET) : 0.2370 REMARK 3 BIN FREE R VALUE SET COUNT : 164 REMARK 3 BIN FREE R VALUE : 0.3350 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3372 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 48 REMARK 3 SOLVENT ATOMS : 252 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 22.12 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.19000 REMARK 3 B22 (A**2) : 0.07000 REMARK 3 B33 (A**2) : -0.25000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -0.05000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.154 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.101 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.069 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 4.788 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.972 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.954 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3524 ; 0.019 ; 0.020 REMARK 3 BOND LENGTHS OTHERS (A): 3076 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4828 ; 1.829 ; 1.964 REMARK 3 BOND ANGLES OTHERS (DEGREES): 7110 ; 1.130 ; 3.002 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 432 ; 6.812 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 150 ;34.426 ;24.933 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 500 ;12.252 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 4 ;10.724 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 538 ; 0.111 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3986 ; 0.009 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 798 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): 6600 ; 4.945 ; 3.000 REMARK 3 SPHERICITY; FREE ATOMS (A**2): 94 ;31.222 ; 5.000 REMARK 3 SPHERICITY; BONDED ATOMS (A**2): 6681 ;13.206 ; 5.000 REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 4LHK COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 31-JUL-13. REMARK 100 THE DEPOSITION ID IS D_1000080638. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 05-OCT-12 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SOLEIL REMARK 200 BEAMLINE : PROXIMA 1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.98011 REMARK 200 MONOCHROMATOR : CHANNEL CUT CRYOGENICALLY COOLED REMARK 200 MONOCHROMATOR CRYSTAL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 44852 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.730 REMARK 200 RESOLUTION RANGE LOW (A) : 38.540 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.3 REMARK 200 DATA REDUNDANCY : 4.500 REMARK 200 R MERGE (I) : 0.09200 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 9.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.73 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.76 REMARK 200 COMPLETENESS FOR SHELL (%) : 96.0 REMARK 200 DATA REDUNDANCY IN SHELL : 4.70 REMARK 200 R MERGE FOR SHELL (I) : 0.70400 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.100 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: BALBES ONLINE SERVER REMARK 200 STARTING MODEL: PDB ENTRY 2XJQ REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 41.98 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.12 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PROTEIN SOLUTION: 50 MM TRIS-HCL PH REMARK 280 7.5, 200 MM NACL, 10 MM CACL2 CRYSTALLIZATION CONDITION: 0.1 M REMARK 280 AMINO ACIDS (L-NA-GLUTAMATE, DL-ALANINE, GLYCINE, DL-LYSINE-HCL, REMARK 280 DL-SERINE), 0.1 M IMIDAZOLE-MES PH 6.5, 30% W/V PEG 550 MME - REMARK 280 PEG 20000, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 42.73800 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A 23 REMARK 465 GLY A 24 REMARK 465 SER A 25 REMARK 465 LYS A 243 REMARK 465 HIS A 244 REMARK 465 THR A 245 REMARK 465 THR A 246 REMARK 465 SER A 247 REMARK 465 LEU A 248 REMARK 465 GLU A 249 REMARK 465 VAL A 250 REMARK 465 LEU A 251 REMARK 465 PHE A 252 REMARK 465 GLN A 253 REMARK 465 GLY A 254 REMARK 465 PRO A 255 REMARK 465 HIS A 256 REMARK 465 HIS A 257 REMARK 465 HIS A 258 REMARK 465 HIS A 259 REMARK 465 HIS A 260 REMARK 465 HIS A 261 REMARK 465 SER B 23 REMARK 465 GLY B 24 REMARK 465 SER B 25 REMARK 465 LYS B 243 REMARK 465 HIS B 244 REMARK 465 THR B 245 REMARK 465 THR B 246 REMARK 465 SER B 247 REMARK 465 LEU B 248 REMARK 465 GLU B 249 REMARK 465 VAL B 250 REMARK 465 LEU B 251 REMARK 465 PHE B 252 REMARK 465 GLN B 253 REMARK 465 GLY B 254 REMARK 465 PRO B 255 REMARK 465 HIS B 256 REMARK 465 HIS B 257 REMARK 465 HIS B 258 REMARK 465 HIS B 259 REMARK 465 HIS B 260 REMARK 465 HIS B 261 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 TYR A 62 -25.39 -148.34 REMARK 500 THR A 131 -169.56 -160.87 REMARK 500 ALA A 200 -125.22 60.84 REMARK 500 ASP A 218 -57.68 64.91 REMARK 500 TYR B 62 -25.74 -148.51 REMARK 500 ILE B 144 -63.99 -123.41 REMARK 500 ALA B 200 -126.60 60.87 REMARK 500 LEU B 204 85.82 -153.95 REMARK 500 ASP B 218 -63.68 70.65 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 303 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 133 OD1 REMARK 620 2 ASP A 134 OD2 78.3 REMARK 620 3 ASN A 197 OD1 118.6 72.2 REMARK 620 4 LYS A 199 O 161.8 108.9 79.6 REMARK 620 5 LEU A 201 O 87.2 134.2 77.6 98.2 REMARK 620 6 MAN C 1 O4 81.0 70.1 132.3 85.9 149.9 REMARK 620 7 MAN C 1 O3 80.0 133.8 152.9 83.2 84.4 66.4 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA B 303 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP B 133 OD1 REMARK 620 2 ASP B 134 OD2 83.0 REMARK 620 3 ASN B 197 OD1 116.7 71.7 REMARK 620 4 LYS B 199 O 162.7 106.7 80.2 REMARK 620 5 LEU B 201 O 83.9 136.5 77.8 97.7 REMARK 620 6 MAN D 1 O4 89.8 72.0 131.1 80.0 149.1 REMARK 620 7 MAN D 1 O3 73.3 132.3 156.0 89.9 82.0 67.2 REMARK 620 N 1 2 3 4 5 6 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4LHL RELATED DB: PDB REMARK 900 RELATED ID: 4LHN RELATED DB: PDB REMARK 999 REMARK 999 SEQUENCE REMARK 999 UNIPROT ENTRY B3IUB3 REPORTS A PROLINE AT POSITION 58, WHILE THE REMARK 999 AUTHORS HAVE CONFIRMED A GLUTAMINE AT THAT POSITION AND HENCE Q 58 REMARK 999 IS A NATURAL VARIANT. THE AUTHORS SAY THAT B3IUB3 ENTRY IN UNIPROT REMARK 999 IS NOT COMPLETE AND IT STOPS AT AA 213. FOR AA 214-247, THE REMARK 999 SEQUENCE REPORTED HERE IS IDENTICAL TO THE ONE REPORTED FOR UNIPROT REMARK 999 B3IUA8. DBREF 4LHK A 23 213 UNP B3IUB3 B3IUB3_SACPS 23 213 DBREF 4LHK B 23 213 UNP B3IUB3 B3IUB3_SACPS 23 213 SEQADV 4LHK GLN A 58 UNP B3IUB3 PRO 58 SEE REMARK 999 SEQADV 4LHK THR A 214 UNP B3IUB3 SEE REMARK 999 SEQADV 4LHK GLU A 215 UNP B3IUB3 SEE REMARK 999 SEQADV 4LHK VAL A 216 UNP B3IUB3 SEE REMARK 999 SEQADV 4LHK ASN A 217 UNP B3IUB3 SEE REMARK 999 SEQADV 4LHK ASP A 218 UNP B3IUB3 SEE REMARK 999 SEQADV 4LHK ASP A 219 UNP B3IUB3 SEE REMARK 999 SEQADV 4LHK PHE A 220 UNP B3IUB3 SEE REMARK 999 SEQADV 4LHK GLU A 221 UNP B3IUB3 SEE REMARK 999 SEQADV 4LHK GLY A 222 UNP B3IUB3 SEE REMARK 999 SEQADV 4LHK TYR A 223 UNP B3IUB3 SEE REMARK 999 SEQADV 4LHK VAL A 224 UNP B3IUB3 SEE REMARK 999 SEQADV 4LHK TYR A 225 UNP B3IUB3 SEE REMARK 999 SEQADV 4LHK SER A 226 UNP B3IUB3 SEE REMARK 999 SEQADV 4LHK PHE A 227 UNP B3IUB3 SEE REMARK 999 SEQADV 4LHK ASP A 228 UNP B3IUB3 SEE REMARK 999 SEQADV 4LHK ASP A 229 UNP B3IUB3 SEE REMARK 999 SEQADV 4LHK ASP A 230 UNP B3IUB3 SEE REMARK 999 SEQADV 4LHK LEU A 231 UNP B3IUB3 SEE REMARK 999 SEQADV 4LHK SER A 232 UNP B3IUB3 SEE REMARK 999 SEQADV 4LHK GLN A 233 UNP B3IUB3 SEE REMARK 999 SEQADV 4LHK SER A 234 UNP B3IUB3 SEE REMARK 999 SEQADV 4LHK ASN A 235 UNP B3IUB3 SEE REMARK 999 SEQADV 4LHK CYS A 236 UNP B3IUB3 SEE REMARK 999 SEQADV 4LHK THR A 237 UNP B3IUB3 SEE REMARK 999 SEQADV 4LHK ILE A 238 UNP B3IUB3 SEE REMARK 999 SEQADV 4LHK PRO A 239 UNP B3IUB3 SEE REMARK 999 SEQADV 4LHK ASP A 240 UNP B3IUB3 SEE REMARK 999 SEQADV 4LHK PRO A 241 UNP B3IUB3 SEE REMARK 999 SEQADV 4LHK SER A 242 UNP B3IUB3 SEE REMARK 999 SEQADV 4LHK LYS A 243 UNP B3IUB3 SEE REMARK 999 SEQADV 4LHK HIS A 244 UNP B3IUB3 SEE REMARK 999 SEQADV 4LHK THR A 245 UNP B3IUB3 SEE REMARK 999 SEQADV 4LHK THR A 246 UNP B3IUB3 SEE REMARK 999 SEQADV 4LHK SER A 247 UNP B3IUB3 SEE REMARK 999 SEQADV 4LHK LEU A 248 UNP B3IUB3 EXPRESSION TAG SEQADV 4LHK GLU A 249 UNP B3IUB3 EXPRESSION TAG SEQADV 4LHK VAL A 250 UNP B3IUB3 EXPRESSION TAG SEQADV 4LHK LEU A 251 UNP B3IUB3 EXPRESSION TAG SEQADV 4LHK PHE A 252 UNP B3IUB3 EXPRESSION TAG SEQADV 4LHK GLN A 253 UNP B3IUB3 EXPRESSION TAG SEQADV 4LHK GLY A 254 UNP B3IUB3 EXPRESSION TAG SEQADV 4LHK PRO A 255 UNP B3IUB3 EXPRESSION TAG SEQADV 4LHK HIS A 256 UNP B3IUB3 EXPRESSION TAG SEQADV 4LHK HIS A 257 UNP B3IUB3 EXPRESSION TAG SEQADV 4LHK HIS A 258 UNP B3IUB3 EXPRESSION TAG SEQADV 4LHK HIS A 259 UNP B3IUB3 EXPRESSION TAG SEQADV 4LHK HIS A 260 UNP B3IUB3 EXPRESSION TAG SEQADV 4LHK HIS A 261 UNP B3IUB3 EXPRESSION TAG SEQADV 4LHK GLN B 58 UNP B3IUB3 PRO 58 SEE REMARK 999 SEQADV 4LHK THR B 214 UNP B3IUB3 SEE REMARK 999 SEQADV 4LHK GLU B 215 UNP B3IUB3 SEE REMARK 999 SEQADV 4LHK VAL B 216 UNP B3IUB3 SEE REMARK 999 SEQADV 4LHK ASN B 217 UNP B3IUB3 SEE REMARK 999 SEQADV 4LHK ASP B 218 UNP B3IUB3 SEE REMARK 999 SEQADV 4LHK ASP B 219 UNP B3IUB3 SEE REMARK 999 SEQADV 4LHK PHE B 220 UNP B3IUB3 SEE REMARK 999 SEQADV 4LHK GLU B 221 UNP B3IUB3 SEE REMARK 999 SEQADV 4LHK GLY B 222 UNP B3IUB3 SEE REMARK 999 SEQADV 4LHK TYR B 223 UNP B3IUB3 SEE REMARK 999 SEQADV 4LHK VAL B 224 UNP B3IUB3 SEE REMARK 999 SEQADV 4LHK TYR B 225 UNP B3IUB3 SEE REMARK 999 SEQADV 4LHK SER B 226 UNP B3IUB3 SEE REMARK 999 SEQADV 4LHK PHE B 227 UNP B3IUB3 SEE REMARK 999 SEQADV 4LHK ASP B 228 UNP B3IUB3 SEE REMARK 999 SEQADV 4LHK ASP B 229 UNP B3IUB3 SEE REMARK 999 SEQADV 4LHK ASP B 230 UNP B3IUB3 SEE REMARK 999 SEQADV 4LHK LEU B 231 UNP B3IUB3 SEE REMARK 999 SEQADV 4LHK SER B 232 UNP B3IUB3 SEE REMARK 999 SEQADV 4LHK GLN B 233 UNP B3IUB3 SEE REMARK 999 SEQADV 4LHK SER B 234 UNP B3IUB3 SEE REMARK 999 SEQADV 4LHK ASN B 235 UNP B3IUB3 SEE REMARK 999 SEQADV 4LHK CYS B 236 UNP B3IUB3 SEE REMARK 999 SEQADV 4LHK THR B 237 UNP B3IUB3 SEE REMARK 999 SEQADV 4LHK ILE B 238 UNP B3IUB3 SEE REMARK 999 SEQADV 4LHK PRO B 239 UNP B3IUB3 SEE REMARK 999 SEQADV 4LHK ASP B 240 UNP B3IUB3 SEE REMARK 999 SEQADV 4LHK PRO B 241 UNP B3IUB3 SEE REMARK 999 SEQADV 4LHK SER B 242 UNP B3IUB3 SEE REMARK 999 SEQADV 4LHK LYS B 243 UNP B3IUB3 SEE REMARK 999 SEQADV 4LHK HIS B 244 UNP B3IUB3 SEE REMARK 999 SEQADV 4LHK THR B 245 UNP B3IUB3 SEE REMARK 999 SEQADV 4LHK THR B 246 UNP B3IUB3 SEE REMARK 999 SEQADV 4LHK SER B 247 UNP B3IUB3 SEE REMARK 999 SEQADV 4LHK LEU B 248 UNP B3IUB3 EXPRESSION TAG SEQADV 4LHK GLU B 249 UNP B3IUB3 EXPRESSION TAG SEQADV 4LHK VAL B 250 UNP B3IUB3 EXPRESSION TAG SEQADV 4LHK LEU B 251 UNP B3IUB3 EXPRESSION TAG SEQADV 4LHK PHE B 252 UNP B3IUB3 EXPRESSION TAG SEQADV 4LHK GLN B 253 UNP B3IUB3 EXPRESSION TAG SEQADV 4LHK GLY B 254 UNP B3IUB3 EXPRESSION TAG SEQADV 4LHK PRO B 255 UNP B3IUB3 EXPRESSION TAG SEQADV 4LHK HIS B 256 UNP B3IUB3 EXPRESSION TAG SEQADV 4LHK HIS B 257 UNP B3IUB3 EXPRESSION TAG SEQADV 4LHK HIS B 258 UNP B3IUB3 EXPRESSION TAG SEQADV 4LHK HIS B 259 UNP B3IUB3 EXPRESSION TAG SEQADV 4LHK HIS B 260 UNP B3IUB3 EXPRESSION TAG SEQADV 4LHK HIS B 261 UNP B3IUB3 EXPRESSION TAG SEQRES 1 A 239 SER GLY SER THR GLN ALA CYS LEU PRO VAL GLY SER ARG SEQRES 2 A 239 LYS ASN GLY MET ASN VAL ASN PHE TYR LYS TYR SER LEU SEQRES 3 A 239 GLN ASP SER THR THR TYR SER ASP PRO GLN TYR MET ALA SEQRES 4 A 239 TYR LYS TYR SER ASP THR LYS LYS LEU GLY SER VAL SER SEQRES 5 A 239 GLY GLN THR HIS LEU SER ILE TYR TYR ASP LEU ASN THR SEQRES 6 A 239 ALA PHE TRP ASN THR ALA SER TRP SER SER ASP LEU PHE SEQRES 7 A 239 GLY PHE TYR THR THR PRO THR ASN VAL THR VAL GLU MET SEQRES 8 A 239 THR GLY TYR PHE LEU PRO PRO GLN THR GLY SER TYR THR SEQRES 9 A 239 PHE LYS PHE ALA THR VAL ASP ASP SER ALA ILE LEU SER SEQRES 10 A 239 VAL GLY GLY SER ILE ALA PHE GLU CYS CYS ALA GLN GLU SEQRES 11 A 239 GLN PRO PRO ILE THR SER THR ASP PHE THR ILE ASN GLY SEQRES 12 A 239 ILE LYS PRO TRP GLY ALA ALA ALA PRO THR ASP ILE LYS SEQRES 13 A 239 GLY SER THR TYR MET TYR ALA GLY TYR TYR TYR PRO ILE SEQRES 14 A 239 LYS ILE VAL TYR SER ASN ALA LYS ALA LEU ALA ARG LEU SEQRES 15 A 239 PRO VAL SER VAL VAL LEU PRO ASP GLY THR GLU VAL ASN SEQRES 16 A 239 ASP ASP PHE GLU GLY TYR VAL TYR SER PHE ASP ASP ASP SEQRES 17 A 239 LEU SER GLN SER ASN CYS THR ILE PRO ASP PRO SER LYS SEQRES 18 A 239 HIS THR THR SER LEU GLU VAL LEU PHE GLN GLY PRO HIS SEQRES 19 A 239 HIS HIS HIS HIS HIS SEQRES 1 B 239 SER GLY SER THR GLN ALA CYS LEU PRO VAL GLY SER ARG SEQRES 2 B 239 LYS ASN GLY MET ASN VAL ASN PHE TYR LYS TYR SER LEU SEQRES 3 B 239 GLN ASP SER THR THR TYR SER ASP PRO GLN TYR MET ALA SEQRES 4 B 239 TYR LYS TYR SER ASP THR LYS LYS LEU GLY SER VAL SER SEQRES 5 B 239 GLY GLN THR HIS LEU SER ILE TYR TYR ASP LEU ASN THR SEQRES 6 B 239 ALA PHE TRP ASN THR ALA SER TRP SER SER ASP LEU PHE SEQRES 7 B 239 GLY PHE TYR THR THR PRO THR ASN VAL THR VAL GLU MET SEQRES 8 B 239 THR GLY TYR PHE LEU PRO PRO GLN THR GLY SER TYR THR SEQRES 9 B 239 PHE LYS PHE ALA THR VAL ASP ASP SER ALA ILE LEU SER SEQRES 10 B 239 VAL GLY GLY SER ILE ALA PHE GLU CYS CYS ALA GLN GLU SEQRES 11 B 239 GLN PRO PRO ILE THR SER THR ASP PHE THR ILE ASN GLY SEQRES 12 B 239 ILE LYS PRO TRP GLY ALA ALA ALA PRO THR ASP ILE LYS SEQRES 13 B 239 GLY SER THR TYR MET TYR ALA GLY TYR TYR TYR PRO ILE SEQRES 14 B 239 LYS ILE VAL TYR SER ASN ALA LYS ALA LEU ALA ARG LEU SEQRES 15 B 239 PRO VAL SER VAL VAL LEU PRO ASP GLY THR GLU VAL ASN SEQRES 16 B 239 ASP ASP PHE GLU GLY TYR VAL TYR SER PHE ASP ASP ASP SEQRES 17 B 239 LEU SER GLN SER ASN CYS THR ILE PRO ASP PRO SER LYS SEQRES 18 B 239 HIS THR THR SER LEU GLU VAL LEU PHE GLN GLY PRO HIS SEQRES 19 B 239 HIS HIS HIS HIS HIS HET MAN C 1 12 HET MAN C 2 11 HET MAN D 1 12 HET MAN D 2 11 HET CA A 303 1 HET CA B 303 1 HETNAM MAN ALPHA-D-MANNOPYRANOSE HETNAM CA CALCIUM ION HETSYN MAN ALPHA-D-MANNOSE; D-MANNOSE; MANNOSE FORMUL 3 MAN 4(C6 H12 O6) FORMUL 5 CA 2(CA 2+) FORMUL 7 HOH *252(H2 O) HELIX 1 1 THR A 52 SER A 55 5 4 HELIX 2 2 ASP A 56 TYR A 62 1 7 HELIX 3 3 LYS A 63 THR A 67 5 5 HELIX 4 4 ASN A 86 TRP A 90 5 5 HELIX 5 5 THR B 52 SER B 55 5 4 HELIX 6 6 ASP B 56 TYR B 62 1 7 HELIX 7 7 LYS B 63 THR B 67 5 5 HELIX 8 8 ASN B 86 TRP B 90 5 5 SHEET 1 A 2 ALA A 28 CYS A 29 0 SHEET 2 A 2 THR A 237 ILE A 238 -1 O ILE A 238 N ALA A 28 SHEET 1 B 5 ARG A 35 ASN A 37 0 SHEET 2 B 5 VAL A 224 PHE A 227 -1 O SER A 226 N LYS A 36 SHEET 3 B 5 VAL A 109 PHE A 117 -1 N TYR A 116 O TYR A 225 SHEET 4 B 5 MET A 39 LYS A 45 -1 N TYR A 44 O THR A 110 SHEET 5 B 5 LYS A 69 GLN A 76 -1 O LEU A 70 N PHE A 43 SHEET 1 C 6 ARG A 35 ASN A 37 0 SHEET 2 C 6 VAL A 224 PHE A 227 -1 O SER A 226 N LYS A 36 SHEET 3 C 6 VAL A 109 PHE A 117 -1 N TYR A 116 O TYR A 225 SHEET 4 C 6 TYR A 189 ASN A 197 -1 O TYR A 189 N PHE A 117 SHEET 5 C 6 SER A 135 VAL A 140 -1 N SER A 135 O SER A 196 SHEET 6 C 6 ILE A 163 ILE A 166 -1 O GLY A 165 N ALA A 136 SHEET 1 D 2 ILE A 81 TYR A 83 0 SHEET 2 D 2 ALA A 202 LEU A 204 -1 O LEU A 204 N ILE A 81 SHEET 1 E 4 ILE A 177 MET A 183 0 SHEET 2 E 4 GLY A 123 PHE A 129 -1 N TYR A 125 O THR A 181 SHEET 3 E 4 VAL A 206 VAL A 209 -1 O SER A 207 N LYS A 128 SHEET 4 E 4 GLU A 215 ASN A 217 -1 O VAL A 216 N VAL A 208 SHEET 1 F 2 ALA B 28 CYS B 29 0 SHEET 2 F 2 THR B 237 ILE B 238 -1 O ILE B 238 N ALA B 28 SHEET 1 G 5 LYS B 36 ASN B 37 0 SHEET 2 G 5 VAL B 224 SER B 226 -1 O SER B 226 N LYS B 36 SHEET 3 G 5 VAL B 109 PHE B 117 -1 N TYR B 116 O TYR B 225 SHEET 4 G 5 MET B 39 LYS B 45 -1 N ASN B 42 O GLU B 112 SHEET 5 G 5 GLY B 71 GLN B 76 -1 O VAL B 73 N VAL B 41 SHEET 1 H 6 LYS B 36 ASN B 37 0 SHEET 2 H 6 VAL B 224 SER B 226 -1 O SER B 226 N LYS B 36 SHEET 3 H 6 VAL B 109 PHE B 117 -1 N TYR B 116 O TYR B 225 SHEET 4 H 6 TYR B 189 ASN B 197 -1 O TYR B 195 N VAL B 111 SHEET 5 H 6 SER B 135 VAL B 140 -1 N SER B 139 O LYS B 192 SHEET 6 H 6 ILE B 163 ILE B 166 -1 O GLY B 165 N ALA B 136 SHEET 1 I 2 ILE B 81 TYR B 83 0 SHEET 2 I 2 ALA B 202 LEU B 204 -1 O LEU B 204 N ILE B 81 SHEET 1 J 4 ILE B 177 MET B 183 0 SHEET 2 J 4 GLY B 123 PHE B 129 -1 N TYR B 125 O THR B 181 SHEET 3 J 4 VAL B 206 VAL B 209 -1 O SER B 207 N LYS B 128 SHEET 4 J 4 GLU B 215 ASN B 217 -1 O VAL B 216 N VAL B 208 SSBOND 1 CYS A 29 CYS A 148 1555 1555 2.04 SSBOND 2 CYS A 149 CYS A 236 1555 1555 2.07 SSBOND 3 CYS B 29 CYS B 148 1555 1555 2.01 SSBOND 4 CYS B 149 CYS B 236 1555 1555 2.05 LINK O2 MAN C 1 C1 MAN C 2 1555 1555 1.45 LINK O2 MAN D 1 C1 MAN D 2 1555 1555 1.44 LINK OD1 ASP A 133 CA CA A 303 1555 1555 2.33 LINK OD2 ASP A 134 CA CA A 303 1555 1555 2.47 LINK OD1 ASN A 197 CA CA A 303 1555 1555 2.26 LINK O LYS A 199 CA CA A 303 1555 1555 2.27 LINK O LEU A 201 CA CA A 303 1555 1555 2.35 LINK CA CA A 303 O4 MAN C 1 1555 1555 2.54 LINK CA CA A 303 O3 MAN C 1 1555 1555 2.54 LINK OD1 ASP B 133 CA CA B 303 1555 1555 2.37 LINK OD2 ASP B 134 CA CA B 303 1555 1555 2.45 LINK OD1 ASN B 197 CA CA B 303 1555 1555 2.32 LINK O LYS B 199 CA CA B 303 1555 1555 2.32 LINK O LEU B 201 CA CA B 303 1555 1555 2.34 LINK CA CA B 303 O4 MAN D 1 1555 1555 2.50 LINK CA CA B 303 O3 MAN D 1 1555 1555 2.74 CISPEP 1 ASP A 133 ASP A 134 0 15.44 CISPEP 2 ASP B 133 ASP B 134 0 11.51 CRYST1 38.618 85.476 68.240 90.00 93.72 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.025895 0.000000 0.001685 0.00000 SCALE2 0.000000 0.011699 0.000000 0.00000 SCALE3 0.000000 0.000000 0.014685 0.00000