HEADER TRANSFERASE 01-JUL-13 4LHM TITLE THYMIDINE PHOSPHORYLASE FROM E.COLI WITH 3'-AZIDO-3'-DEOXYTHYMIDINE COMPND MOL_ID: 1; COMPND 2 MOLECULE: THYMIDINE PHOSPHORYLASE; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: TDRPASE; COMPND 5 EC: 2.4.2.4; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI; SOURCE 3 ORGANISM_TAXID: 83333; SOURCE 4 STRAIN: K12; SOURCE 5 GENE: DEOA, TPP, TTG, B4382, JW4345; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR V.I.TIMOFEEV,Y.A.ABRAMCHIK,R.S.ESIPOV,I.P.KURANOVA REVDAT 3 28-FEB-24 4LHM 1 REMARK SEQADV REVDAT 2 09-JUL-14 4LHM 1 JRNL REVDAT 1 09-APR-14 4LHM 0 JRNL AUTH V.TIMOFEEV,Y.ABRAMCHIK,N.ZHUKHLISTOVA,T.MURAVIEVA,I.FATEEV, JRNL AUTH 2 R.ESIPOV,I.KURANOVA JRNL TITL 3'-AZIDOTHYMIDINE IN THE ACTIVE SITE OF ESCHERICHIA COLI JRNL TITL 2 THYMIDINE PHOSPHORYLASE: THE PECULIARITY OF THE BINDING ON JRNL TITL 3 THE BASIS OF X-RAY STUDY. JRNL REF ACTA CRYSTALLOGR.,SECT.D V. 70 1155 2014 JRNL REFN ISSN 0907-4449 JRNL PMID 24699659 JRNL DOI 10.1107/S1399004714001904 REMARK 2 REMARK 2 RESOLUTION. 1.52 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.7.0029 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.52 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 14.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 84887 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.155 REMARK 3 R VALUE (WORKING SET) : 0.153 REMARK 3 FREE R VALUE : 0.196 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 4471 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : NULL REMARK 3 BIN RESOLUTION RANGE LOW (A) : NULL REMARK 3 REFLECTION IN BIN (WORKING SET) : NULL REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 BIN R VALUE (WORKING SET) : NULL REMARK 3 BIN FREE R VALUE SET COUNT : NULL REMARK 3 BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3306 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 66 REMARK 3 SOLVENT ATOMS : 486 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 28.98 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -1.02000 REMARK 3 B22 (A**2) : -1.02000 REMARK 3 B33 (A**2) : 2.03000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.067 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.066 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.056 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 3.734 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.980 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.967 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3515 ; 0.008 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 3373 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4775 ; 1.250 ; 1.986 REMARK 3 BOND ANGLES OTHERS (DEGREES): 7767 ; 0.767 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 463 ; 5.819 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 142 ;33.633 ;24.296 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 599 ;12.791 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 24 ;14.748 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 554 ; 0.078 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 4027 ; 0.004 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 749 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): 6887 ; 2.034 ; 3.000 REMARK 3 SPHERICITY; FREE ATOMS (A**2): 195 ;50.266 ; 5.000 REMARK 3 SPHERICITY; BONDED ATOMS (A**2): 7155 ;17.975 ; 5.000 REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 4LHM COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 26-JUL-13. REMARK 100 THE DEPOSITION ID IS D_1000080640. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 23-MAY-12 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SPRING-8 REMARK 200 BEAMLINE : BL41XU REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.8 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : NULL REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 84887 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.520 REMARK 200 RESOLUTION RANGE LOW (A) : 20.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 59.46 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.03 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: COUNTER DIFFUSION, TEMPERATURE 298.0K, REMARK 280 COUNTER-DIFFUSION REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 43 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+3/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+1/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+3/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+1/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 33.52850 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 65.38100 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 65.38100 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 50.29275 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 65.38100 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 65.38100 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 16.76425 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 65.38100 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 65.38100 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 50.29275 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 65.38100 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 65.38100 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 16.76425 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 33.52850 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 5220 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 33400 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -182.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 -33.52850 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 166 NE - CZ - NH1 ANGL. DEV. = 4.0 DEGREES REMARK 500 ARG A 166 NE - CZ - NH2 ANGL. DEV. = -3.4 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 50 -173.04 64.07 REMARK 500 ASN A 78 58.94 -105.36 REMARK 500 SER A 113 -154.38 -111.86 REMARK 500 ALA A 161 56.54 34.80 REMARK 500 ASN A 252 -82.45 -123.70 REMARK 500 ASP A 394 -164.75 -166.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 502 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 503 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 504 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 505 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 506 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 507 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 508 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 509 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE AZZ A 510 DBREF 4LHM A 2 440 UNP P07650 TYPH_ECOLI 2 440 SEQADV 4LHM LEU A 1 UNP P07650 EXPRESSION TAG SEQRES 1 A 440 LEU PHE LEU ALA GLN GLU ILE ILE ARG LYS LYS ARG ASP SEQRES 2 A 440 GLY HIS ALA LEU SER ASP GLU GLU ILE ARG PHE PHE ILE SEQRES 3 A 440 ASN GLY ILE ARG ASP ASN THR ILE SER GLU GLY GLN ILE SEQRES 4 A 440 ALA ALA LEU ALA MET THR ILE PHE PHE HIS ASP MET THR SEQRES 5 A 440 MET PRO GLU ARG VAL SER LEU THR MET ALA MET ARG ASP SEQRES 6 A 440 SER GLY THR VAL LEU ASP TRP LYS SER LEU HIS LEU ASN SEQRES 7 A 440 GLY PRO ILE VAL ASP LYS HIS SER THR GLY GLY VAL GLY SEQRES 8 A 440 ASP VAL THR SER LEU MET LEU GLY PRO MET VAL ALA ALA SEQRES 9 A 440 CYS GLY GLY TYR ILE PRO MET ILE SER GLY ARG GLY LEU SEQRES 10 A 440 GLY HIS THR GLY GLY THR LEU ASP LYS LEU GLU SER ILE SEQRES 11 A 440 PRO GLY PHE ASP ILE PHE PRO ASP ASP ASN ARG PHE ARG SEQRES 12 A 440 GLU ILE ILE LYS ASP VAL GLY VAL ALA ILE ILE GLY GLN SEQRES 13 A 440 THR SER SER LEU ALA PRO ALA ASP LYS ARG PHE TYR ALA SEQRES 14 A 440 THR ARG ASP ILE THR ALA THR VAL ASP SER ILE PRO LEU SEQRES 15 A 440 ILE THR ALA SER ILE LEU ALA LYS LYS LEU ALA GLU GLY SEQRES 16 A 440 LEU ASP ALA LEU VAL MET ASP VAL LYS VAL GLY SER GLY SEQRES 17 A 440 ALA PHE MET PRO THR TYR GLU LEU SER GLU ALA LEU ALA SEQRES 18 A 440 GLU ALA ILE VAL GLY VAL ALA ASN GLY ALA GLY VAL ARG SEQRES 19 A 440 THR THR ALA LEU LEU THR ASP MET ASN GLN VAL LEU ALA SEQRES 20 A 440 SER SER ALA GLY ASN ALA VAL GLU VAL ARG GLU ALA VAL SEQRES 21 A 440 GLN PHE LEU THR GLY GLU TYR ARG ASN PRO ARG LEU PHE SEQRES 22 A 440 ASP VAL THR MET ALA LEU CYS VAL GLU MET LEU ILE SER SEQRES 23 A 440 GLY LYS LEU ALA LYS ASP ASP ALA GLU ALA ARG ALA LYS SEQRES 24 A 440 LEU GLN ALA VAL LEU ASP ASN GLY LYS ALA ALA GLU VAL SEQRES 25 A 440 PHE GLY ARG MET VAL ALA ALA GLN LYS GLY PRO THR ASP SEQRES 26 A 440 PHE VAL GLU ASN TYR ALA LYS TYR LEU PRO THR ALA MET SEQRES 27 A 440 LEU THR LYS ALA VAL TYR ALA ASP THR GLU GLY PHE VAL SEQRES 28 A 440 SER GLU MET ASP THR ARG ALA LEU GLY MET ALA VAL VAL SEQRES 29 A 440 ALA MET GLY GLY GLY ARG ARG GLN ALA SER ASP THR ILE SEQRES 30 A 440 ASP TYR SER VAL GLY PHE THR ASP MET ALA ARG LEU GLY SEQRES 31 A 440 ASP GLN VAL ASP GLY GLN ARG PRO LEU ALA VAL ILE HIS SEQRES 32 A 440 ALA LYS ASP GLU ASN ASN TRP GLN GLU ALA ALA LYS ALA SEQRES 33 A 440 VAL LYS ALA ALA ILE LYS LEU ALA ASP LYS ALA PRO GLU SEQRES 34 A 440 SER THR PRO THR VAL TYR ARG ARG ILE SER GLU HET SO4 A 501 5 HET SO4 A 502 5 HET SO4 A 503 5 HET SO4 A 504 5 HET SO4 A 505 5 HET SO4 A 506 5 HET SO4 A 507 5 HET GOL A 508 6 HET GOL A 509 6 HET AZZ A 510 19 HETNAM SO4 SULFATE ION HETNAM GOL GLYCEROL HETNAM AZZ 3'-AZIDO-3'-DEOXYTHYMIDINE HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL HETSYN AZZ AZIDOTHYMIDINE; ZIDOVUDINE FORMUL 2 SO4 7(O4 S 2-) FORMUL 9 GOL 2(C3 H8 O3) FORMUL 11 AZZ C10 H13 N5 O4 FORMUL 12 HOH *486(H2 O) HELIX 1 1 PHE A 2 ASP A 13 1 12 HELIX 2 2 SER A 18 ASP A 31 1 14 HELIX 3 3 SER A 35 ASP A 50 1 16 HELIX 4 4 THR A 52 ASP A 65 1 14 HELIX 5 5 TRP A 72 HIS A 76 5 5 HELIX 6 6 VAL A 93 CYS A 105 1 13 HELIX 7 7 GLY A 122 GLU A 128 1 7 HELIX 8 8 ASP A 138 GLY A 150 1 13 HELIX 9 9 ALA A 161 ASP A 172 1 12 HELIX 10 10 SER A 179 ALA A 193 1 15 HELIX 11 11 THR A 213 ALA A 231 1 19 HELIX 12 12 ASN A 252 THR A 264 1 13 HELIX 13 13 ASN A 269 GLY A 287 1 19 HELIX 14 14 ASP A 292 ASN A 306 1 15 HELIX 15 15 GLY A 307 GLN A 320 1 14 HELIX 16 16 ASP A 325 LEU A 334 1 10 HELIX 17 17 ASP A 355 MET A 366 1 12 HELIX 18 18 ASP A 406 ALA A 420 1 15 SHEET 1 A 4 VAL A 82 SER A 86 0 SHEET 2 A 4 ALA A 198 VAL A 205 1 O ASP A 202 N HIS A 85 SHEET 3 A 4 ARG A 234 ASP A 241 1 O LEU A 238 N MET A 201 SHEET 4 A 4 VAL A 434 ILE A 438 -1 O ILE A 438 N ALA A 237 SHEET 1 B 2 ILE A 109 ILE A 112 0 SHEET 2 B 2 VAL A 151 ILE A 154 1 O ILE A 154 N MET A 111 SHEET 1 C 4 ALA A 250 GLY A 251 0 SHEET 2 C 4 GLY A 382 THR A 384 -1 O PHE A 383 N ALA A 250 SHEET 3 C 4 ALA A 400 ALA A 404 -1 O HIS A 403 N GLY A 382 SHEET 4 C 4 LEU A 339 VAL A 343 -1 N LEU A 339 O ALA A 404 SHEET 1 D 3 GLN A 392 VAL A 393 0 SHEET 2 D 3 GLY A 349 MET A 354 -1 N GLY A 349 O VAL A 393 SHEET 3 D 3 ILE A 421 ALA A 424 -1 O ALA A 424 N PHE A 350 CISPEP 1 LEU A 1 PHE A 2 0 8.94 SITE 1 AC1 11 LYS A 84 SER A 86 SER A 95 SER A 113 SITE 2 AC1 11 THR A 123 HOH A 628 HOH A 655 HOH A 660 SITE 3 AC1 11 HOH A 668 HOH A 790 HOH A1033 SITE 1 AC2 11 GLN A 5 ARG A 9 ARG A 12 ALA A 175 SITE 2 AC2 11 THR A 176 VAL A 177 ASP A 178 HOH A 666 SITE 3 AC2 11 HOH A 707 HOH A1039 HOH A1042 SITE 1 AC3 10 ARG A 257 MET A 338 THR A 340 HIS A 403 SITE 2 AC3 10 ASP A 406 GLU A 407 ASN A 408 HOH A 726 SITE 3 AC3 10 HOH A 816 HOH A1057 SITE 1 AC4 3 HIS A 15 ALA A 16 HOH A1021 SITE 1 AC5 4 ARG A 234 LYS A 288 HOH A 879 HOH A1075 SITE 1 AC6 3 GLN A 372 ALA A 373 HOH A 812 SITE 1 AC7 3 ARG A 437 SER A 439 HOH A 760 SITE 1 AC8 5 ARG A 268 PHE A 273 HOH A 723 HOH A 727 SITE 2 AC8 5 HOH A 859 SITE 1 AC9 6 PHE A 2 LEU A 3 ALA A 4 GLN A 5 SITE 2 AC9 6 GLN A 38 HOH A1031 SITE 1 BC1 12 THR A 87 TYR A 168 ARG A 171 VAL A 177 SITE 2 BC1 12 SER A 186 LYS A 190 PHE A 210 MET A 211 SITE 3 BC1 12 LEU A 220 HOH A1023 HOH A1028 HOH A1086 CRYST1 130.762 130.762 67.057 90.00 90.00 90.00 P 43 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.007647 0.000000 0.000000 0.00000 SCALE2 0.000000 0.007647 0.000000 0.00000 SCALE3 0.000000 0.000000 0.014913 0.00000