HEADER HYDROLASE/IMMUNE SYSTEM 01-JUL-13 4LHQ TITLE RICIN A CHAIN BOUND TO CAMELID NANOBODY (VHH8) COMPND MOL_ID: 1; COMPND 2 MOLECULE: RICIN; COMPND 3 CHAIN: A, C; COMPND 4 FRAGMENT: UNP RESIDUES 39-298; COMPND 5 SYNONYM: RICIN A CHAIN, RRNA N-GLYCOSIDASE; COMPND 6 EC: 3.2.2.22; COMPND 7 ENGINEERED: YES; COMPND 8 MOL_ID: 2; COMPND 9 MOLECULE: CAMELID NANOBODY; COMPND 10 CHAIN: B, D; COMPND 11 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: RICINUS COMMUNIS; SOURCE 3 ORGANISM_COMMON: CASTOR BEAN; SOURCE 4 ORGANISM_TAXID: 3988; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PUTA; SOURCE 10 MOL_ID: 2; SOURCE 11 ORGANISM_SCIENTIFIC: VICUGNA PACOS; SOURCE 12 ORGANISM_TAXID: 30538; SOURCE 13 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 14 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 15 EXPRESSION_SYSTEM_STRAIN: BL21(DE3) ROSETTA; SOURCE 16 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 17 EXPRESSION_SYSTEM_PLASMID: MCSG7 KEYWDS RIBOSOME INHIBITING PROTEIN, HYDROLASE-IMMUNE SYSTEM COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR M.J.RUDOLPH,J.CHEUNG,M.FRANKLIN,F.BURSHTEYN,M.CASSIDY,E.GARY,N.MANTIS REVDAT 7 28-FEB-24 4LHQ 1 REMARK REVDAT 6 15-NOV-17 4LHQ 1 REMARK REVDAT 5 15-MAR-17 4LHQ 1 SOURCE REVDAT 4 20-AUG-14 4LHQ 1 JRNL REVDAT 3 30-JUL-14 4LHQ 1 JRNL REVDAT 2 02-JUL-14 4LHQ 1 JRNL REVDAT 1 11-JUN-14 4LHQ 0 JRNL AUTH M.J.RUDOLPH,D.J.VANCE,J.CHEUNG,M.C.FRANKLIN,F.BURSHTEYN, JRNL AUTH 2 M.S.CASSIDY,E.N.GARY,C.HERRERA,C.B.SHOEMAKER,N.J.MANTIS JRNL TITL CRYSTAL STRUCTURES OF RICIN TOXIN'S ENZYMATIC SUBUNIT (RTA) JRNL TITL 2 IN COMPLEX WITH NEUTRALIZING AND NON-NEUTRALIZING JRNL TITL 3 SINGLE-CHAIN ANTIBODIES. JRNL REF J.MOL.BIOL. V. 426 3057 2014 JRNL REFN ISSN 0022-2836 JRNL PMID 24907552 JRNL DOI 10.1016/J.JMB.2014.05.026 REMARK 2 REMARK 2 RESOLUTION. 2.30 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.7.1_743 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : TWIN_LSQ_F REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.30 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 48.54 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 97.0 REMARK 3 NUMBER OF REFLECTIONS : 34330 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.193 REMARK 3 R VALUE (WORKING SET) : 0.192 REMARK 3 FREE R VALUE : 0.248 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1752 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 24.2735 - 5.2511 0.91 2713 156 0.1422 0.2160 REMARK 3 2 5.2511 - 4.1749 0.91 2668 157 0.1174 0.1775 REMARK 3 3 4.1749 - 3.6491 0.94 2762 140 0.1591 0.2198 REMARK 3 4 3.6491 - 3.3164 0.95 2794 139 0.1949 0.2830 REMARK 3 5 3.3164 - 3.0792 0.95 2781 154 0.2406 0.2886 REMARK 3 6 3.0792 - 2.8980 0.95 2761 150 0.2602 0.2886 REMARK 3 7 2.8980 - 2.7530 0.95 2795 158 0.2908 0.3582 REMARK 3 8 2.7530 - 2.6334 0.95 2832 134 0.2956 0.3310 REMARK 3 9 2.6334 - 2.5321 0.95 2792 140 0.3134 0.3316 REMARK 3 10 2.5321 - 2.4448 0.94 2733 132 0.3067 0.3531 REMARK 3 11 2.4448 - 2.3684 0.89 2650 133 0.3272 0.3654 REMARK 3 12 2.3684 - 2.3000 0.77 2260 134 0.3562 0.3380 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.10 REMARK 3 SHRINKAGE RADIUS : 0.83 REMARK 3 K_SOL : 0.34 REMARK 3 B_SOL : 73.32 REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : NULL REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 32.100 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 86.04 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 9.35880 REMARK 3 B22 (A**2) : 9.35880 REMARK 3 B33 (A**2) : -18.71750 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: 0.4960 REMARK 3 OPERATOR: H,-K,-L REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.004 6214 REMARK 3 ANGLE : 0.879 8446 REMARK 3 CHIRALITY : 0.062 928 REMARK 3 PLANARITY : 0.003 1108 REMARK 3 DIHEDRAL : 13.019 2246 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 28 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN A AND (RESSEQ 5:33) REMARK 3 ORIGIN FOR THE GROUP (A): 11.5484 7.1098 -6.0994 REMARK 3 T TENSOR REMARK 3 T11: 0.1378 T22: 0.7308 REMARK 3 T33: 0.4901 T12: -0.0292 REMARK 3 T13: -0.1625 T23: -0.3561 REMARK 3 L TENSOR REMARK 3 L11: 4.3169 L22: 1.7557 REMARK 3 L33: 0.0600 L12: -0.2924 REMARK 3 L13: -0.1348 L23: 0.0324 REMARK 3 S TENSOR REMARK 3 S11: -0.1972 S12: -0.1509 S13: 0.4825 REMARK 3 S21: 0.1457 S22: 0.2434 S23: -0.3719 REMARK 3 S31: -0.0869 S32: 0.6764 S33: -0.0507 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN A AND (RESSEQ 34:87) REMARK 3 ORIGIN FOR THE GROUP (A): 2.6694 3.1439 -11.0627 REMARK 3 T TENSOR REMARK 3 T11: -0.0754 T22: 0.3843 REMARK 3 T33: 0.2636 T12: -0.0018 REMARK 3 T13: -0.4033 T23: -0.4526 REMARK 3 L TENSOR REMARK 3 L11: 3.1884 L22: 2.0809 REMARK 3 L33: 1.6844 L12: -0.2535 REMARK 3 L13: -0.1544 L23: 0.8321 REMARK 3 S TENSOR REMARK 3 S11: -0.0396 S12: -0.0514 S13: 0.1632 REMARK 3 S21: 0.1469 S22: 0.2409 S23: -0.2238 REMARK 3 S31: 0.2051 S32: 0.1632 S33: 0.6966 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN A AND (RESSEQ 88:113) REMARK 3 ORIGIN FOR THE GROUP (A): 2.6671 -5.9023 -21.5965 REMARK 3 T TENSOR REMARK 3 T11: 0.6962 T22: 0.2818 REMARK 3 T33: 0.3797 T12: 0.1863 REMARK 3 T13: -0.2492 T23: -0.1547 REMARK 3 L TENSOR REMARK 3 L11: 5.8827 L22: 5.9573 REMARK 3 L33: 4.2364 L12: -0.2957 REMARK 3 L13: 3.1310 L23: -0.2110 REMARK 3 S TENSOR REMARK 3 S11: 0.4617 S12: 0.3398 S13: -0.1704 REMARK 3 S21: -0.3562 S22: -0.3856 S23: 0.1363 REMARK 3 S31: 0.3967 S32: 0.0532 S33: -0.1340 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN A AND (RESSEQ 114:161) REMARK 3 ORIGIN FOR THE GROUP (A): 9.7788 -13.3849 -7.7111 REMARK 3 T TENSOR REMARK 3 T11: 0.7032 T22: 0.4418 REMARK 3 T33: 0.4873 T12: 0.2646 REMARK 3 T13: -0.0802 T23: 0.0617 REMARK 3 L TENSOR REMARK 3 L11: 4.6387 L22: 2.5821 REMARK 3 L33: 3.0832 L12: 0.7298 REMARK 3 L13: -0.4961 L23: 1.5592 REMARK 3 S TENSOR REMARK 3 S11: -0.2932 S12: -1.0554 S13: -0.9777 REMARK 3 S21: 1.1530 S22: 0.4199 S23: -0.4939 REMARK 3 S31: 1.0481 S32: 0.6758 S33: -0.1140 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN A AND (RESSEQ 162:202) REMARK 3 ORIGIN FOR THE GROUP (A): 9.0367 -4.5308 2.4693 REMARK 3 T TENSOR REMARK 3 T11: 0.5300 T22: 0.8910 REMARK 3 T33: 0.4055 T12: 0.2599 REMARK 3 T13: -0.1681 T23: -0.1566 REMARK 3 L TENSOR REMARK 3 L11: 2.3248 L22: 2.2942 REMARK 3 L33: 3.6907 L12: -0.5880 REMARK 3 L13: 0.1008 L23: 0.6134 REMARK 3 S TENSOR REMARK 3 S11: -0.3018 S12: -1.4477 S13: 0.1537 REMARK 3 S21: 0.8555 S22: 0.5707 S23: -0.6412 REMARK 3 S31: 0.5362 S32: 0.6454 S33: -0.2235 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN A AND (RESSEQ 203:249) REMARK 3 ORIGIN FOR THE GROUP (A): -9.6849 -1.6088 7.7805 REMARK 3 T TENSOR REMARK 3 T11: 0.5759 T22: 0.6146 REMARK 3 T33: 0.4477 T12: -0.0678 REMARK 3 T13: 0.1989 T23: -0.2984 REMARK 3 L TENSOR REMARK 3 L11: 4.9504 L22: 6.2361 REMARK 3 L33: 5.1202 L12: -3.7285 REMARK 3 L13: -1.3372 L23: 0.1136 REMARK 3 S TENSOR REMARK 3 S11: -0.5967 S12: -0.3053 S13: -0.6026 REMARK 3 S21: 1.0658 S22: -0.2767 S23: 0.6466 REMARK 3 S31: 0.9715 S32: -0.3789 S33: 0.6084 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN A AND (RESSEQ 250:263) REMARK 3 ORIGIN FOR THE GROUP (A): -10.6495 6.5872 -1.7488 REMARK 3 T TENSOR REMARK 3 T11: 0.4416 T22: 0.7075 REMARK 3 T33: 0.5128 T12: -0.0757 REMARK 3 T13: -0.1060 T23: -0.3156 REMARK 3 L TENSOR REMARK 3 L11: 1.9257 L22: 2.0298 REMARK 3 L33: 4.4541 L12: 0.7487 REMARK 3 L13: 0.7074 L23: 1.3555 REMARK 3 S TENSOR REMARK 3 S11: -0.1047 S12: 0.1887 S13: 0.1884 REMARK 3 S21: 0.0701 S22: -0.1772 S23: 0.3792 REMARK 3 S31: -0.2057 S32: -0.9602 S33: 0.3728 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN B AND (RESSEQ 2:17) REMARK 3 ORIGIN FOR THE GROUP (A): -3.9672 -35.6544 -36.5505 REMARK 3 T TENSOR REMARK 3 T11: 0.6275 T22: 0.3170 REMARK 3 T33: 0.7544 T12: -0.2443 REMARK 3 T13: -0.0956 T23: -0.1310 REMARK 3 L TENSOR REMARK 3 L11: 3.1219 L22: 4.0175 REMARK 3 L33: 0.7897 L12: 1.1717 REMARK 3 L13: -0.5533 L23: -0.5382 REMARK 3 S TENSOR REMARK 3 S11: 0.0769 S12: 0.3226 S13: -0.5941 REMARK 3 S21: 0.4108 S22: -0.0116 S23: 0.4689 REMARK 3 S31: 1.2718 S32: -0.5025 S33: -0.0070 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN B AND (RESSEQ 18:25) REMARK 3 ORIGIN FOR THE GROUP (A): -6.8691 -31.5212 -31.4568 REMARK 3 T TENSOR REMARK 3 T11: 0.7810 T22: 0.5556 REMARK 3 T33: 0.7019 T12: -0.3343 REMARK 3 T13: 0.0107 T23: -0.2445 REMARK 3 L TENSOR REMARK 3 L11: 2.3942 L22: 0.1581 REMARK 3 L33: 3.2803 L12: -0.2476 REMARK 3 L13: -2.7194 L23: 0.1225 REMARK 3 S TENSOR REMARK 3 S11: -0.3329 S12: 0.6193 S13: -0.0774 REMARK 3 S21: 0.3135 S22: -0.0225 S23: 0.3194 REMARK 3 S31: 0.2087 S32: -0.5652 S33: 0.4018 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: CHAIN B AND (RESSEQ 26:39) REMARK 3 ORIGIN FOR THE GROUP (A): 0.4263 -26.1080 -26.6132 REMARK 3 T TENSOR REMARK 3 T11: 0.2845 T22: 0.4951 REMARK 3 T33: 0.3768 T12: 0.2341 REMARK 3 T13: -0.1058 T23: -0.1448 REMARK 3 L TENSOR REMARK 3 L11: 6.5536 L22: 7.4636 REMARK 3 L33: 6.1075 L12: -1.1934 REMARK 3 L13: -0.8481 L23: 2.7445 REMARK 3 S TENSOR REMARK 3 S11: -0.4763 S12: -0.5249 S13: -0.1638 REMARK 3 S21: 1.0208 S22: 0.4668 S23: 0.2507 REMARK 3 S31: 0.7374 S32: 0.2809 S33: 0.1196 REMARK 3 TLS GROUP : 11 REMARK 3 SELECTION: CHAIN B AND (RESSEQ 40:51) REMARK 3 ORIGIN FOR THE GROUP (A): 9.3182 -30.2331 -36.6183 REMARK 3 T TENSOR REMARK 3 T11: 0.2632 T22: 0.4755 REMARK 3 T33: 0.8097 T12: 0.0862 REMARK 3 T13: 0.0557 T23: -0.2678 REMARK 3 L TENSOR REMARK 3 L11: 6.6717 L22: 4.8617 REMARK 3 L33: 2.1680 L12: -5.6817 REMARK 3 L13: -2.5324 L23: 2.3452 REMARK 3 S TENSOR REMARK 3 S11: -0.4252 S12: 0.0769 S13: -0.3139 REMARK 3 S21: 0.2908 S22: 0.2919 S23: 0.1773 REMARK 3 S31: 0.6017 S32: 0.6230 S33: 0.2228 REMARK 3 TLS GROUP : 12 REMARK 3 SELECTION: CHAIN B AND (RESSEQ 52:57) REMARK 3 ORIGIN FOR THE GROUP (A): -2.9395 -14.9969 -27.7752 REMARK 3 T TENSOR REMARK 3 T11: 0.4409 T22: 0.4206 REMARK 3 T33: 0.5382 T12: 0.2322 REMARK 3 T13: -0.0675 T23: -0.1470 REMARK 3 L TENSOR REMARK 3 L11: 2.4245 L22: 1.8220 REMARK 3 L33: 3.4959 L12: 2.1011 REMARK 3 L13: 2.4138 L23: 2.1283 REMARK 3 S TENSOR REMARK 3 S11: 0.0956 S12: 0.0302 S13: 0.0602 REMARK 3 S21: 0.0806 S22: 0.0669 S23: 0.4893 REMARK 3 S31: 0.1413 S32: -0.8147 S33: -0.1260 REMARK 3 TLS GROUP : 13 REMARK 3 SELECTION: CHAIN B AND (RESSEQ 58:83) REMARK 3 ORIGIN FOR THE GROUP (A): -2.5402 -23.5789 -35.9700 REMARK 3 T TENSOR REMARK 3 T11: 0.3344 T22: 0.7710 REMARK 3 T33: 0.4669 T12: 0.1849 REMARK 3 T13: -0.1046 T23: -0.2285 REMARK 3 L TENSOR REMARK 3 L11: 6.6705 L22: 4.4835 REMARK 3 L33: 8.5357 L12: -0.0953 REMARK 3 L13: -5.5679 L23: 1.0688 REMARK 3 S TENSOR REMARK 3 S11: -0.0854 S12: 0.8895 S13: 0.0883 REMARK 3 S21: 0.2308 S22: 0.1768 S23: 0.1114 REMARK 3 S31: 0.6216 S32: -0.2611 S33: -0.0446 REMARK 3 TLS GROUP : 14 REMARK 3 SELECTION: CHAIN B AND (RESSEQ 84:112) REMARK 3 ORIGIN FOR THE GROUP (A): 5.1983 -25.9036 -33.4559 REMARK 3 T TENSOR REMARK 3 T11: 0.6863 T22: 0.5043 REMARK 3 T33: 0.5574 T12: 0.4177 REMARK 3 T13: -0.1692 T23: -0.2879 REMARK 3 L TENSOR REMARK 3 L11: 0.7485 L22: 1.4153 REMARK 3 L33: 1.4341 L12: -0.4211 REMARK 3 L13: 0.0595 L23: 1.1960 REMARK 3 S TENSOR REMARK 3 S11: 0.1019 S12: 0.3079 S13: -0.3838 REMARK 3 S21: 0.1722 S22: 0.0903 S23: 0.1824 REMARK 3 S31: 0.2322 S32: 0.1498 S33: -0.0286 REMARK 3 TLS GROUP : 15 REMARK 3 SELECTION: CHAIN B AND (RESSEQ 113:129) REMARK 3 ORIGIN FOR THE GROUP (A): 3.6966 -33.5041 -31.7643 REMARK 3 T TENSOR REMARK 3 T11: 0.6945 T22: 0.4040 REMARK 3 T33: 0.6011 T12: 0.1184 REMARK 3 T13: -0.1005 T23: -0.3029 REMARK 3 L TENSOR REMARK 3 L11: 1.1937 L22: 2.8128 REMARK 3 L33: 1.8199 L12: 0.9927 REMARK 3 L13: 0.9527 L23: 0.1920 REMARK 3 S TENSOR REMARK 3 S11: 0.1383 S12: 0.2541 S13: -0.2516 REMARK 3 S21: 0.5189 S22: -0.4726 S23: 0.2694 REMARK 3 S31: 0.4979 S32: -0.2570 S33: 0.1972 REMARK 3 TLS GROUP : 16 REMARK 3 SELECTION: CHAIN C AND (RESSEQ 5:33) REMARK 3 ORIGIN FOR THE GROUP (A): 31.7218 -12.9410 28.9276 REMARK 3 T TENSOR REMARK 3 T11: 0.6173 T22: 0.6404 REMARK 3 T33: 0.5689 T12: 0.0614 REMARK 3 T13: 0.3384 T23: -0.0505 REMARK 3 L TENSOR REMARK 3 L11: 4.4491 L22: 3.6373 REMARK 3 L33: 0.1894 L12: -0.2723 REMARK 3 L13: -0.3335 L23: 0.3107 REMARK 3 S TENSOR REMARK 3 S11: 0.1227 S12: 0.0596 S13: 0.5217 REMARK 3 S21: -0.2121 S22: -0.4126 S23: -0.3805 REMARK 3 S31: -0.4854 S32: -0.1513 S33: 0.1585 REMARK 3 TLS GROUP : 17 REMARK 3 SELECTION: CHAIN C AND (RESSEQ 34:87) REMARK 3 ORIGIN FOR THE GROUP (A): 27.6659 -21.8441 33.7773 REMARK 3 T TENSOR REMARK 3 T11: 0.4509 T22: 0.6740 REMARK 3 T33: 0.3656 T12: -0.1231 REMARK 3 T13: 0.1430 T23: -0.1371 REMARK 3 L TENSOR REMARK 3 L11: 2.6550 L22: 2.7124 REMARK 3 L33: 1.1362 L12: -0.4818 REMARK 3 L13: 0.4550 L23: 0.7702 REMARK 3 S TENSOR REMARK 3 S11: 0.1598 S12: 0.3074 S13: 0.1408 REMARK 3 S21: -0.0140 S22: -0.0733 S23: -0.4593 REMARK 3 S31: -0.2802 S32: -0.0161 S33: 0.0425 REMARK 3 TLS GROUP : 18 REMARK 3 SELECTION: CHAIN C AND (RESSEQ 88:113) REMARK 3 ORIGIN FOR THE GROUP (A): 18.5778 -21.8898 44.2770 REMARK 3 T TENSOR REMARK 3 T11: 0.7034 T22: 0.4529 REMARK 3 T33: 0.5062 T12: -0.2090 REMARK 3 T13: 0.3087 T23: -0.2766 REMARK 3 L TENSOR REMARK 3 L11: 4.4836 L22: 5.4024 REMARK 3 L33: 0.9623 L12: 1.0955 REMARK 3 L13: 1.5141 L23: -0.4486 REMARK 3 S TENSOR REMARK 3 S11: 0.0070 S12: -0.1074 S13: -0.3796 REMARK 3 S21: 0.3150 S22: 0.0389 S23: 0.1019 REMARK 3 S31: 0.0173 S32: -0.1872 S33: -0.1300 REMARK 3 TLS GROUP : 19 REMARK 3 SELECTION: CHAIN C AND (RESSEQ 114:161) REMARK 3 ORIGIN FOR THE GROUP (A): 11.2074 -14.5675 30.4410 REMARK 3 T TENSOR REMARK 3 T11: 0.8297 T22: 0.6306 REMARK 3 T33: 0.2815 T12: 0.3231 REMARK 3 T13: 0.2978 T23: -0.2279 REMARK 3 L TENSOR REMARK 3 L11: 3.2005 L22: 2.6535 REMARK 3 L33: 0.0437 L12: 1.9929 REMARK 3 L13: 0.3177 L23: 0.0678 REMARK 3 S TENSOR REMARK 3 S11: -0.1386 S12: 0.5726 S13: 0.3616 REMARK 3 S21: -0.7974 S22: -0.2155 S23: 0.4944 REMARK 3 S31: -0.1559 S32: -0.3509 S33: 0.0747 REMARK 3 TLS GROUP : 20 REMARK 3 SELECTION: CHAIN C AND (RESSEQ 162:202) REMARK 3 ORIGIN FOR THE GROUP (A): 20.0959 -15.2676 20.2873 REMARK 3 T TENSOR REMARK 3 T11: 0.8561 T22: 1.0273 REMARK 3 T33: 0.3160 T12: 0.2047 REMARK 3 T13: 0.1140 T23: -0.1915 REMARK 3 L TENSOR REMARK 3 L11: 1.6718 L22: 3.1054 REMARK 3 L33: 1.4064 L12: -0.0605 REMARK 3 L13: -0.3643 L23: -1.2869 REMARK 3 S TENSOR REMARK 3 S11: 0.2326 S12: 1.3652 S13: 0.2875 REMARK 3 S21: -0.8621 S22: -0.1472 S23: -0.0887 REMARK 3 S31: -0.6512 S32: -0.2338 S33: -0.1056 REMARK 3 TLS GROUP : 21 REMARK 3 SELECTION: CHAIN C AND (RESSEQ 203:249) REMARK 3 ORIGIN FOR THE GROUP (A): 22.8911 -33.9518 14.7815 REMARK 3 T TENSOR REMARK 3 T11: 0.5403 T22: 0.6664 REMARK 3 T33: 0.0683 T12: -0.0363 REMARK 3 T13: 0.2963 T23: -0.2725 REMARK 3 L TENSOR REMARK 3 L11: 3.5846 L22: 2.0469 REMARK 3 L33: 1.0413 L12: -1.5786 REMARK 3 L13: 0.0347 L23: 0.7650 REMARK 3 S TENSOR REMARK 3 S11: 0.1821 S12: 0.3922 S13: -0.3457 REMARK 3 S21: -0.6536 S22: -0.0768 S23: 0.1001 REMARK 3 S31: -0.3822 S32: -0.1273 S33: -0.1504 REMARK 3 TLS GROUP : 22 REMARK 3 SELECTION: CHAIN C AND (RESSEQ 250:263) REMARK 3 ORIGIN FOR THE GROUP (A): 31.0414 -35.0865 24.3315 REMARK 3 T TENSOR REMARK 3 T11: 0.6418 T22: 0.6670 REMARK 3 T33: 0.3877 T12: 0.0998 REMARK 3 T13: 0.1298 T23: -0.2653 REMARK 3 L TENSOR REMARK 3 L11: 1.6840 L22: 2.5635 REMARK 3 L33: 6.1939 L12: 1.3436 REMARK 3 L13: 1.0101 L23: 0.7121 REMARK 3 S TENSOR REMARK 3 S11: 0.2275 S12: -0.3639 S13: -0.0990 REMARK 3 S21: 0.0150 S22: -0.0646 S23: -0.1826 REMARK 3 S31: 0.1903 S32: 0.5448 S33: -0.0398 REMARK 3 TLS GROUP : 23 REMARK 3 SELECTION: CHAIN D AND (RESSEQ 2:17) REMARK 3 ORIGIN FOR THE GROUP (A): -11.2788 -28.4587 59.0275 REMARK 3 T TENSOR REMARK 3 T11: 1.0214 T22: 0.8021 REMARK 3 T33: 1.0735 T12: 0.1638 REMARK 3 T13: 0.2101 T23: -0.5322 REMARK 3 L TENSOR REMARK 3 L11: 3.9003 L22: 2.9717 REMARK 3 L33: 0.0761 L12: 0.8973 REMARK 3 L13: -0.1081 L23: 0.1401 REMARK 3 S TENSOR REMARK 3 S11: -0.2289 S12: -0.0322 S13: 0.1724 REMARK 3 S21: -0.1071 S22: 0.1289 S23: 0.0021 REMARK 3 S31: 0.2759 S32: -0.6361 S33: 0.2164 REMARK 3 TLS GROUP : 24 REMARK 3 SELECTION: CHAIN D AND (RESSEQ 18:39) REMARK 3 ORIGIN FOR THE GROUP (A): -3.5141 -26.4995 50.7848 REMARK 3 T TENSOR REMARK 3 T11: 0.3861 T22: 0.8285 REMARK 3 T33: 0.6575 T12: -0.2561 REMARK 3 T13: 0.1369 T23: -0.2676 REMARK 3 L TENSOR REMARK 3 L11: 2.9268 L22: 3.3773 REMARK 3 L33: 6.5623 L12: 1.6383 REMARK 3 L13: 1.6654 L23: -1.2906 REMARK 3 S TENSOR REMARK 3 S11: 0.0426 S12: 0.2889 S13: -0.3048 REMARK 3 S21: -0.1734 S22: -0.1431 S23: 0.3419 REMARK 3 S31: 0.9227 S32: -0.4609 S33: 0.4617 REMARK 3 TLS GROUP : 25 REMARK 3 SELECTION: CHAIN D AND (RESSEQ 40:51) REMARK 3 ORIGIN FOR THE GROUP (A): -5.7573 -15.2185 59.2690 REMARK 3 T TENSOR REMARK 3 T11: 0.6837 T22: 0.8541 REMARK 3 T33: 0.6491 T12: 0.0021 REMARK 3 T13: 0.4203 T23: -0.3007 REMARK 3 L TENSOR REMARK 3 L11: 4.2476 L22: 6.2596 REMARK 3 L33: 0.4081 L12: -5.1584 REMARK 3 L13: -1.3183 L23: 1.5983 REMARK 3 S TENSOR REMARK 3 S11: 0.3051 S12: 0.0544 S13: 0.1134 REMARK 3 S21: 0.0112 S22: -0.2024 S23: 0.0597 REMARK 3 S31: -0.4989 S32: -0.4884 S33: -0.0837 REMARK 3 TLS GROUP : 26 REMARK 3 SELECTION: CHAIN D AND (RESSEQ 52:83) REMARK 3 ORIGIN FOR THE GROUP (A): 2.2908 -27.1825 57.1096 REMARK 3 T TENSOR REMARK 3 T11: 0.4994 T22: 0.2708 REMARK 3 T33: 0.7809 T12: -0.2191 REMARK 3 T13: 0.2179 T23: -0.2275 REMARK 3 L TENSOR REMARK 3 L11: 2.4610 L22: 2.3123 REMARK 3 L33: 2.7791 L12: 0.8101 REMARK 3 L13: -0.8681 L23: 0.8677 REMARK 3 S TENSOR REMARK 3 S11: 0.0618 S12: -0.1764 S13: -0.0115 REMARK 3 S21: 0.2460 S22: -0.2808 S23: -0.1266 REMARK 3 S31: 0.1631 S32: -0.2908 S33: 0.3027 REMARK 3 TLS GROUP : 27 REMARK 3 SELECTION: CHAIN D AND (RESSEQ 84:112) REMARK 3 ORIGIN FOR THE GROUP (A): -1.4455 -19.3334 56.0780 REMARK 3 T TENSOR REMARK 3 T11: 0.6725 T22: 0.3794 REMARK 3 T33: 0.6691 T12: -0.2140 REMARK 3 T13: 0.2366 T23: -0.1997 REMARK 3 L TENSOR REMARK 3 L11: 0.7783 L22: 0.0394 REMARK 3 L33: 0.9569 L12: 0.1589 REMARK 3 L13: -0.2463 L23: 0.0052 REMARK 3 S TENSOR REMARK 3 S11: -0.1255 S12: 0.0659 S13: 0.1762 REMARK 3 S21: 0.0763 S22: 0.0185 S23: 0.2224 REMARK 3 S31: -0.2226 S32: 0.0907 S33: 0.0663 REMARK 3 TLS GROUP : 28 REMARK 3 SELECTION: CHAIN D AND (RESSEQ 113:129) REMARK 3 ORIGIN FOR THE GROUP (A): -9.0510 -20.7579 54.3386 REMARK 3 T TENSOR REMARK 3 T11: 0.8722 T22: 0.6749 REMARK 3 T33: 0.8900 T12: 0.0988 REMARK 3 T13: 0.2756 T23: -0.4346 REMARK 3 L TENSOR REMARK 3 L11: 1.6431 L22: 1.0724 REMARK 3 L33: 0.9894 L12: 0.9219 REMARK 3 L13: -0.4397 L23: -0.8908 REMARK 3 S TENSOR REMARK 3 S11: -0.3569 S12: 0.0302 S13: -0.1661 REMARK 3 S21: -0.0726 S22: 0.0030 S23: 0.1626 REMARK 3 S31: 0.1146 S32: -0.3928 S33: 0.2354 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : 2 REMARK 3 NCS GROUP : 1 REMARK 3 NCS OPERATOR : 1 REMARK 3 REFERENCE SELECTION: CHAIN A AND (RESSEQ 5:264 ) REMARK 3 SELECTION : CHAIN C AND (RESSEQ 5:264 ) REMARK 3 ATOM PAIRS NUMBER : 2066 REMARK 3 RMSD : 0.006 REMARK 3 NCS GROUP : 2 REMARK 3 NCS OPERATOR : 1 REMARK 3 REFERENCE SELECTION: CHAIN B AND (RESSEQ 2:129 ) REMARK 3 SELECTION : CHAIN D AND (RESSEQ 2:129 ) REMARK 3 ATOM PAIRS NUMBER : 974 REMARK 3 RMSD : 0.006 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4LHQ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 26-JUL-13. REMARK 100 THE DEPOSITION ID IS D_1000080644. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 07-MAR-13 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 4.6 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : NSLS REMARK 200 BEAMLINE : X29A REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.08 REMARK 200 MONOCHROMATOR : SI 111 REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 34433 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.300 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.0 REMARK 200 DATA REDUNDANCY : 4.900 REMARK 200 R MERGE (I) : 0.07600 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 9.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.30 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.34 REMARK 200 COMPLETENESS FOR SHELL (%) : 78.9 REMARK 200 DATA REDUNDANCY IN SHELL : 3.30 REMARK 200 R MERGE FOR SHELL (I) : 0.38000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER 2.1.4 REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 48.23 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.38 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 100 MM NAACETATE, 2 M NAFORMATE, PH REMARK 280 4.6, VAPOR DIFFUSION, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 41 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y,X,Z+1/4 REMARK 290 4555 Y,-X,Z+3/4 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 169.79750 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 84.89875 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 254.69625 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 NH2 ARG C 235 O HOH C 308 1.73 REMARK 500 O PHE C 11 O HOH C 301 1.95 REMARK 500 N LYS C 4 O HOH C 320 1.95 REMARK 500 OH TYR D 60 O HOH D 201 2.01 REMARK 500 O HOH B 201 O HOH B 203 2.01 REMARK 500 O GLN C 231 O HOH C 322 2.04 REMARK 500 OG1 THR A 163 O HOH A 309 2.04 REMARK 500 OG1 THR C 71 O HOH C 319 2.09 REMARK 500 O GLY B 122 O HOH B 205 2.10 REMARK 500 O TRP D 119 O HOH D 204 2.11 REMARK 500 O ILE A 249 O HOH A 302 2.14 REMARK 500 NH1 ARG C 191 O SER C 198 2.15 REMARK 500 NH1 ARG A 191 O SER A 198 2.16 REMARK 500 O PRO D 106 O HOH D 217 2.18 REMARK 500 O ILE A 192 N ASN A 195 2.18 REMARK 500 O ILE C 192 N ASN C 195 2.18 REMARK 500 NH2 ARG A 196 O HOH A 311 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 OD2 ASP B 62 NE2 GLN C 98 4654 2.19 REMARK 500 NZ LYS B 87 OE2 GLU C 67 4554 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA A 36 -14.95 68.62 REMARK 500 GLU A 41 -5.29 74.39 REMARK 500 ILE A 175 -73.47 -111.29 REMARK 500 ILE A 192 -60.78 -96.21 REMARK 500 ILE A 251 -65.21 -94.30 REMARK 500 ALA A 253 -62.26 -96.75 REMARK 500 PRO A 262 -177.89 -67.99 REMARK 500 SER B 30 -14.73 85.18 REMARK 500 SER B 85 65.55 37.62 REMARK 500 ALA B 92 169.19 175.45 REMARK 500 TYR B 107 -16.95 85.61 REMARK 500 ALA C 36 -14.79 68.44 REMARK 500 GLU C 41 -5.20 75.22 REMARK 500 ILE C 175 -73.21 -112.10 REMARK 500 ILE C 192 -60.82 -96.38 REMARK 500 ILE C 251 -65.27 -94.60 REMARK 500 ALA C 253 -62.21 -96.80 REMARK 500 PRO C 262 -177.63 -67.93 REMARK 500 SER D 30 -14.80 84.96 REMARK 500 SER D 85 65.53 37.69 REMARK 500 ALA D 92 168.92 175.19 REMARK 500 TYR D 107 -17.00 85.32 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4LGP RELATED DB: PDB REMARK 900 RICIN A CHAIN BOUND TO CAMELID NANOBODY (VHH1) REMARK 900 RELATED ID: 4LGR RELATED DB: PDB REMARK 900 RICIN A CHAIN BOUND TO CAMELID NANOBODY (VHH3) REMARK 900 RELATED ID: 4LGS RELATED DB: PDB REMARK 900 RICIN A CHAIN BOUND TO CAMELID NANOBODY (VHH4) REMARK 900 RELATED ID: 4LHJ RELATED DB: PDB REMARK 900 RICIN A CHAIN BOUND TO CAMELID NANOBODY (VHH5) DBREF 4LHQ A 4 263 UNP P02879 RICI_RICCO 39 298 DBREF 4LHQ C 4 263 UNP P02879 RICI_RICCO 39 298 DBREF 4LHQ B 2 129 PDB 4LHQ 4LHQ 2 129 DBREF 4LHQ D 2 129 PDB 4LHQ 4LHQ 2 129 SEQRES 1 A 260 LYS GLN TYR PRO ILE ILE ASN PHE THR THR ALA GLY ALA SEQRES 2 A 260 THR VAL GLN SER TYR THR ASN PHE ILE ARG ALA VAL ARG SEQRES 3 A 260 GLY ARG LEU THR THR GLY ALA ASP VAL ARG HIS GLU ILE SEQRES 4 A 260 PRO VAL LEU PRO ASN ARG VAL GLY LEU PRO ILE ASN GLN SEQRES 5 A 260 ARG PHE ILE LEU VAL GLU LEU SER ASN HIS ALA GLU LEU SEQRES 6 A 260 SER VAL THR LEU ALA LEU ASP VAL THR ASN ALA TYR VAL SEQRES 7 A 260 VAL GLY TYR ARG ALA GLY ASN SER ALA TYR PHE PHE HIS SEQRES 8 A 260 PRO ASP ASN GLN GLU ASP ALA GLU ALA ILE THR HIS LEU SEQRES 9 A 260 PHE THR ASP VAL GLN ASN ARG TYR THR PHE ALA PHE GLY SEQRES 10 A 260 GLY ASN TYR ASP ARG LEU GLU GLN LEU ALA GLY ASN LEU SEQRES 11 A 260 ARG GLU ASN ILE GLU LEU GLY ASN GLY PRO LEU GLU GLU SEQRES 12 A 260 ALA ILE SER ALA LEU TYR TYR TYR SER THR GLY GLY THR SEQRES 13 A 260 GLN LEU PRO THR LEU ALA ARG SER PHE ILE ILE CYS ILE SEQRES 14 A 260 GLN MET ILE SER GLU ALA ALA ARG PHE GLN TYR ILE GLU SEQRES 15 A 260 GLY GLU MET ARG THR ARG ILE ARG TYR ASN ARG ARG SER SEQRES 16 A 260 ALA PRO ASP PRO SER VAL ILE THR LEU GLU ASN SER TRP SEQRES 17 A 260 GLY ARG LEU SER THR ALA ILE GLN GLU SER ASN GLN GLY SEQRES 18 A 260 ALA PHE ALA SER PRO ILE GLN LEU GLN ARG ARG ASN GLY SEQRES 19 A 260 SER LYS PHE SER VAL TYR ASP VAL SER ILE LEU ILE PRO SEQRES 20 A 260 ILE ILE ALA LEU MET VAL TYR ARG CYS ALA PRO PRO PRO SEQRES 1 B 128 VAL GLN LEU VAL GLU THR GLY GLY GLY THR VAL GLN THR SEQRES 2 B 128 GLY GLY SER LEU ARG LEU SER CYS SER ALA SER GLY GLY SEQRES 3 B 128 SER PHE SER ARG ASN ALA MET GLY TRP PHE ARG GLN ALA SEQRES 4 B 128 PRO GLY LYS GLU ARG GLU PHE VAL ALA ALA ILE ASN TRP SEQRES 5 B 128 SER ALA SER SER THR TYR TYR ARG ASP SER VAL LYS GLY SEQRES 6 B 128 ARG PHE THR VAL SER ARG ASP ASN ALA LYS ASN THR VAL SEQRES 7 B 128 TYR LEU HIS LEU ASN SER LEU LYS LEU GLU ASP THR ALA SEQRES 8 B 128 ALA TYR TYR CYS ALA GLY SER SER VAL TYR ALA GLU MET SEQRES 9 B 128 PRO TYR ALA ASP SER VAL LYS ALA THR SER TYR ASN TYR SEQRES 10 B 128 TRP GLY GLN GLY THR GLN VAL THR VAL SER SER SEQRES 1 C 260 LYS GLN TYR PRO ILE ILE ASN PHE THR THR ALA GLY ALA SEQRES 2 C 260 THR VAL GLN SER TYR THR ASN PHE ILE ARG ALA VAL ARG SEQRES 3 C 260 GLY ARG LEU THR THR GLY ALA ASP VAL ARG HIS GLU ILE SEQRES 4 C 260 PRO VAL LEU PRO ASN ARG VAL GLY LEU PRO ILE ASN GLN SEQRES 5 C 260 ARG PHE ILE LEU VAL GLU LEU SER ASN HIS ALA GLU LEU SEQRES 6 C 260 SER VAL THR LEU ALA LEU ASP VAL THR ASN ALA TYR VAL SEQRES 7 C 260 VAL GLY TYR ARG ALA GLY ASN SER ALA TYR PHE PHE HIS SEQRES 8 C 260 PRO ASP ASN GLN GLU ASP ALA GLU ALA ILE THR HIS LEU SEQRES 9 C 260 PHE THR ASP VAL GLN ASN ARG TYR THR PHE ALA PHE GLY SEQRES 10 C 260 GLY ASN TYR ASP ARG LEU GLU GLN LEU ALA GLY ASN LEU SEQRES 11 C 260 ARG GLU ASN ILE GLU LEU GLY ASN GLY PRO LEU GLU GLU SEQRES 12 C 260 ALA ILE SER ALA LEU TYR TYR TYR SER THR GLY GLY THR SEQRES 13 C 260 GLN LEU PRO THR LEU ALA ARG SER PHE ILE ILE CYS ILE SEQRES 14 C 260 GLN MET ILE SER GLU ALA ALA ARG PHE GLN TYR ILE GLU SEQRES 15 C 260 GLY GLU MET ARG THR ARG ILE ARG TYR ASN ARG ARG SER SEQRES 16 C 260 ALA PRO ASP PRO SER VAL ILE THR LEU GLU ASN SER TRP SEQRES 17 C 260 GLY ARG LEU SER THR ALA ILE GLN GLU SER ASN GLN GLY SEQRES 18 C 260 ALA PHE ALA SER PRO ILE GLN LEU GLN ARG ARG ASN GLY SEQRES 19 C 260 SER LYS PHE SER VAL TYR ASP VAL SER ILE LEU ILE PRO SEQRES 20 C 260 ILE ILE ALA LEU MET VAL TYR ARG CYS ALA PRO PRO PRO SEQRES 1 D 128 VAL GLN LEU VAL GLU THR GLY GLY GLY THR VAL GLN THR SEQRES 2 D 128 GLY GLY SER LEU ARG LEU SER CYS SER ALA SER GLY GLY SEQRES 3 D 128 SER PHE SER ARG ASN ALA MET GLY TRP PHE ARG GLN ALA SEQRES 4 D 128 PRO GLY LYS GLU ARG GLU PHE VAL ALA ALA ILE ASN TRP SEQRES 5 D 128 SER ALA SER SER THR TYR TYR ARG ASP SER VAL LYS GLY SEQRES 6 D 128 ARG PHE THR VAL SER ARG ASP ASN ALA LYS ASN THR VAL SEQRES 7 D 128 TYR LEU HIS LEU ASN SER LEU LYS LEU GLU ASP THR ALA SEQRES 8 D 128 ALA TYR TYR CYS ALA GLY SER SER VAL TYR ALA GLU MET SEQRES 9 D 128 PRO TYR ALA ASP SER VAL LYS ALA THR SER TYR ASN TYR SEQRES 10 D 128 TRP GLY GLN GLY THR GLN VAL THR VAL SER SER FORMUL 5 HOH *82(H2 O) HELIX 1 1 THR A 17 THR A 33 1 17 HELIX 2 2 PRO A 52 GLN A 55 5 4 HELIX 3 3 ASN A 97 THR A 105 1 9 HELIX 4 4 ASN A 122 ALA A 130 1 9 HELIX 5 5 GLY A 140 TYR A 153 1 14 HELIX 6 6 GLN A 160 ILE A 175 1 16 HELIX 7 7 ILE A 175 PHE A 181 1 7 HELIX 8 8 PHE A 181 TYR A 194 1 14 HELIX 9 9 ASP A 201 GLU A 220 1 20 HELIX 10 10 SER A 246 ILE A 249 5 4 HELIX 11 11 ASP B 62 LYS B 65 5 4 HELIX 12 12 LYS B 87 THR B 91 5 5 HELIX 13 13 LYS B 112 TYR B 116 5 5 HELIX 14 14 THR C 17 THR C 33 1 17 HELIX 15 15 PRO C 52 GLN C 55 5 4 HELIX 16 16 ASN C 97 THR C 105 1 9 HELIX 17 17 ASN C 122 ALA C 130 1 9 HELIX 18 18 GLY C 140 TYR C 153 1 14 HELIX 19 19 GLN C 160 ILE C 175 1 16 HELIX 20 20 ILE C 175 PHE C 181 1 7 HELIX 21 21 PHE C 181 TYR C 194 1 14 HELIX 22 22 ASP C 201 GLU C 220 1 20 HELIX 23 23 SER C 246 ILE C 249 5 4 HELIX 24 24 ASP D 62 LYS D 65 5 4 HELIX 25 25 LYS D 87 THR D 91 5 5 HELIX 26 26 LYS D 112 TYR D 116 5 5 SHEET 1 A 7 ILE A 8 THR A 12 0 SHEET 2 A 7 PHE A 57 SER A 63 1 O LEU A 59 N ILE A 9 SHEET 3 A 7 VAL A 70 ASP A 75 -1 O LEU A 72 N VAL A 60 SHEET 4 A 7 TYR A 80 ALA A 86 -1 O VAL A 82 N ALA A 73 SHEET 5 A 7 SER A 89 PHE A 92 -1 O TYR A 91 N TYR A 84 SHEET 6 A 7 ASN A 113 PHE A 117 1 O TYR A 115 N ALA A 90 SHEET 7 A 7 TYR B 102 GLU B 104 -1 O ALA B 103 N THR A 116 SHEET 1 B 2 VAL A 38 ARG A 39 0 SHEET 2 B 2 ILE A 42 PRO A 43 -1 O ILE A 42 N ARG A 39 SHEET 1 C 2 ALA A 225 GLN A 233 0 SHEET 2 C 2 LYS A 239 ASP A 244 -1 O PHE A 240 N LEU A 232 SHEET 1 D 4 GLN B 3 THR B 7 0 SHEET 2 D 4 LEU B 18 SER B 25 -1 O SER B 21 N THR B 7 SHEET 3 D 4 THR B 78 LEU B 83 -1 O LEU B 81 N LEU B 20 SHEET 4 D 4 PHE B 68 ASP B 73 -1 N SER B 71 O TYR B 80 SHEET 1 E 6 THR B 11 GLN B 13 0 SHEET 2 E 6 GLN B 124 SER B 128 1 O SER B 128 N VAL B 12 SHEET 3 E 6 ALA B 92 SER B 99 -1 N ALA B 92 O VAL B 125 SHEET 4 E 6 ALA B 33 GLN B 39 -1 N PHE B 37 O TYR B 95 SHEET 5 E 6 ARG B 45 ILE B 51 -1 O ALA B 49 N TRP B 36 SHEET 6 E 6 THR B 58 TYR B 60 -1 O TYR B 59 N ALA B 50 SHEET 1 F 4 THR B 11 GLN B 13 0 SHEET 2 F 4 GLN B 124 SER B 128 1 O SER B 128 N VAL B 12 SHEET 3 F 4 ALA B 92 SER B 99 -1 N ALA B 92 O VAL B 125 SHEET 4 F 4 TYR B 118 TRP B 119 -1 O TYR B 118 N GLY B 98 SHEET 1 G 7 ILE C 8 THR C 12 0 SHEET 2 G 7 PHE C 57 SER C 63 1 O LEU C 59 N ILE C 9 SHEET 3 G 7 VAL C 70 ASP C 75 -1 O LEU C 72 N VAL C 60 SHEET 4 G 7 TYR C 80 ALA C 86 -1 O VAL C 82 N ALA C 73 SHEET 5 G 7 SER C 89 PHE C 92 -1 O TYR C 91 N TYR C 84 SHEET 6 G 7 ASN C 113 PHE C 117 1 O TYR C 115 N ALA C 90 SHEET 7 G 7 TYR D 102 GLU D 104 -1 O ALA D 103 N THR C 116 SHEET 1 H 2 VAL C 38 ARG C 39 0 SHEET 2 H 2 ILE C 42 PRO C 43 -1 O ILE C 42 N ARG C 39 SHEET 1 I 2 ALA C 225 GLN C 233 0 SHEET 2 I 2 LYS C 239 ASP C 244 -1 O PHE C 240 N LEU C 232 SHEET 1 J 4 GLN D 3 THR D 7 0 SHEET 2 J 4 LEU D 18 SER D 25 -1 O SER D 21 N THR D 7 SHEET 3 J 4 THR D 78 LEU D 83 -1 O LEU D 81 N LEU D 20 SHEET 4 J 4 PHE D 68 ASP D 73 -1 N SER D 71 O TYR D 80 SHEET 1 K 6 THR D 11 GLN D 13 0 SHEET 2 K 6 GLN D 124 SER D 128 1 O SER D 128 N VAL D 12 SHEET 3 K 6 ALA D 92 SER D 99 -1 N ALA D 92 O VAL D 125 SHEET 4 K 6 ALA D 33 GLN D 39 -1 N PHE D 37 O TYR D 95 SHEET 5 K 6 ARG D 45 ILE D 51 -1 O ALA D 49 N TRP D 36 SHEET 6 K 6 THR D 58 TYR D 60 -1 O TYR D 59 N ALA D 50 SHEET 1 L 4 THR D 11 GLN D 13 0 SHEET 2 L 4 GLN D 124 SER D 128 1 O SER D 128 N VAL D 12 SHEET 3 L 4 ALA D 92 SER D 99 -1 N ALA D 92 O VAL D 125 SHEET 4 L 4 TYR D 118 TRP D 119 -1 O TYR D 118 N GLY D 98 CISPEP 1 SER B 54 ALA B 55 0 2.27 CISPEP 2 SER D 54 ALA D 55 0 2.30 CRYST1 49.048 49.048 339.595 90.00 90.00 90.00 P 41 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.020388 0.000000 0.000000 0.00000 SCALE2 0.000000 0.020388 0.000000 0.00000 SCALE3 0.000000 0.000000 0.002945 0.00000 MTRIX1 1 0.007869 0.999908 0.011026 23.92090 1 MTRIX2 1 0.999961 -0.007912 0.003869 -24.82480 1 MTRIX3 1 0.003956 0.010995 -0.999932 22.84360 1 MTRIX1 2 0.007538 0.999907 0.011380 23.90320 1 MTRIX2 2 0.999963 -0.007586 0.004170 -24.83830 1 MTRIX3 2 0.004256 0.011348 -0.999927 22.84370 1