HEADER VIRAL PROTEIN 02-JUL-13 4LID TITLE A100, A DNA BINDING SCAFFOLD FROM SULFOLOBUS SPINDLE-SHAPE VIRUS 1 COMPND MOL_ID: 1; COMPND 2 MOLECULE: A-100; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SULFOLOBUS SPINDLE-SHAPED VIRUS 1; SOURCE 3 ORGANISM_COMMON: SSV1; SOURCE 4 ORGANISM_TAXID: 244589; SOURCE 5 GENE: A100; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3)-RIL; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PDEST14 KEYWDS VIRAL PROTEIN, HYPERTHERMOPHILIC VIRAL PROTEIN, SSV1, SULFOLOBUS KEYWDS 2 SPINDLE-SHAPE VIRUS 1, ARCHAEA, A100, DNA BINDING SCAFFOLD, A DNA KEYWDS 3 BINDING SCAFFOLD EXPDTA X-RAY DIFFRACTION AUTHOR B.J.EILERS,C.WAGNER,M.M.THOMAS,C.M.LAWRENCE,M.J.YOUNG REVDAT 2 28-FEB-24 4LID 1 SEQADV REVDAT 1 24-SEP-14 4LID 0 JRNL AUTH B.J.EILERS,C.WAGNER,M.M.THOMAS,C.M.LAWRENCE,M.J.YOUNG JRNL TITL A100, A DNA BINDING SCAFFOLD FROM SULFOLOBUS SPINDLE-SHAPE JRNL TITL 2 VIRUS 1 JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 3.00 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.7.0029 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 3.00 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 21.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 2.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.5 REMARK 3 NUMBER OF REFLECTIONS : 8488 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.238 REMARK 3 R VALUE (WORKING SET) : 0.237 REMARK 3 FREE R VALUE : 0.251 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.700 REMARK 3 FREE R VALUE TEST SET COUNT : 423 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 3.00 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 3.08 REMARK 3 REFLECTION IN BIN (WORKING SET) : 591 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 100.0 REMARK 3 BIN R VALUE (WORKING SET) : 0.3120 REMARK 3 BIN FREE R VALUE SET COUNT : 36 REMARK 3 BIN FREE R VALUE : 0.2730 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1438 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 0 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 94.10 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 122.8 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.25000 REMARK 3 B22 (A**2) : 0.25000 REMARK 3 B33 (A**2) : -0.80000 REMARK 3 B12 (A**2) : 0.25000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.525 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.315 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.243 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 29.633 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.949 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.931 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 1455 ; 0.015 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 1454 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 1953 ; 1.743 ; 2.000 REMARK 3 BOND ANGLES OTHERS (DEGREES): 3358 ; 2.960 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 169 ; 6.546 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 75 ;33.516 ;26.133 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 302 ;16.320 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 5 ; 9.045 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 225 ; 0.083 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1587 ; 0.006 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 302 ; 0.005 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 10 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 10 A 23 REMARK 3 ORIGIN FOR THE GROUP (A): 31.7766 46.3208 23.6143 REMARK 3 T TENSOR REMARK 3 T11: 0.3745 T22: 0.4028 REMARK 3 T33: 0.4312 T12: 0.1139 REMARK 3 T13: -0.0174 T23: -0.0801 REMARK 3 L TENSOR REMARK 3 L11: 9.5096 L22: 3.1863 REMARK 3 L33: 21.7427 L12: 1.4825 REMARK 3 L13: -1.0492 L23: -0.2372 REMARK 3 S TENSOR REMARK 3 S11: 0.0073 S12: 0.2676 S13: -0.1459 REMARK 3 S21: -0.0478 S22: 0.0994 S23: 0.0590 REMARK 3 S31: -0.2823 S32: -0.3504 S33: -0.1067 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 24 A 41 REMARK 3 ORIGIN FOR THE GROUP (A): 35.6458 47.2297 1.6690 REMARK 3 T TENSOR REMARK 3 T11: 1.0749 T22: 2.2635 REMARK 3 T33: 0.3193 T12: -0.0092 REMARK 3 T13: 0.0274 T23: -0.1157 REMARK 3 L TENSOR REMARK 3 L11: 12.9715 L22: 11.8003 REMARK 3 L33: 14.4056 L12: -2.7303 REMARK 3 L13: -12.9940 L23: 6.5746 REMARK 3 S TENSOR REMARK 3 S11: -0.3664 S12: 3.5838 S13: -0.0889 REMARK 3 S21: -1.4567 S22: 0.3981 S23: -0.2679 REMARK 3 S31: -0.2266 S32: -3.4828 S33: -0.0316 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 42 A 61 REMARK 3 ORIGIN FOR THE GROUP (A): 42.0820 49.2474 5.5185 REMARK 3 T TENSOR REMARK 3 T11: 0.9156 T22: 1.4507 REMARK 3 T33: 0.2769 T12: -0.1485 REMARK 3 T13: 0.0413 T23: -0.0528 REMARK 3 L TENSOR REMARK 3 L11: 8.4212 L22: 9.2640 REMARK 3 L33: 10.6814 L12: 0.0379 REMARK 3 L13: -4.6856 L23: 1.5123 REMARK 3 S TENSOR REMARK 3 S11: -0.4747 S12: 2.3109 S13: -0.2257 REMARK 3 S21: -1.2621 S22: 0.3627 S23: -0.4117 REMARK 3 S31: -0.4015 S32: -1.2290 S33: 0.1119 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 62 A 100 REMARK 3 ORIGIN FOR THE GROUP (A): 45.3111 52.4299 14.9975 REMARK 3 T TENSOR REMARK 3 T11: 0.4652 T22: 0.5505 REMARK 3 T33: 0.2244 T12: 0.0443 REMARK 3 T13: 0.0340 T23: 0.0639 REMARK 3 L TENSOR REMARK 3 L11: 10.8701 L22: 11.5743 REMARK 3 L33: 6.1130 L12: 4.9203 REMARK 3 L13: -0.0494 L23: 4.0949 REMARK 3 S TENSOR REMARK 3 S11: -0.2803 S12: 0.6482 S13: 0.4684 REMARK 3 S21: -0.0201 S22: 0.0278 S23: 0.0822 REMARK 3 S31: -0.3145 S32: -0.5007 S33: 0.2525 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 15 B 19 REMARK 3 ORIGIN FOR THE GROUP (A): 32.7607 38.9154 3.3526 REMARK 3 T TENSOR REMARK 3 T11: 0.6957 T22: 1.4214 REMARK 3 T33: 0.6855 T12: -0.2794 REMARK 3 T13: -0.0266 T23: -0.7302 REMARK 3 L TENSOR REMARK 3 L11: 14.5284 L22: 8.5392 REMARK 3 L33: 21.7725 L12: 0.3980 REMARK 3 L13: 16.7285 L23: 2.9887 REMARK 3 S TENSOR REMARK 3 S11: 0.9232 S12: 1.2178 S13: -0.3192 REMARK 3 S21: -0.0159 S22: -1.4426 S23: 1.1404 REMARK 3 S31: 1.4033 S32: 0.3704 S33: 0.5194 REMARK 3 REMARK 3 TLS GROUP : 6 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 20 B 33 REMARK 3 ORIGIN FOR THE GROUP (A): 35.2844 43.5011 30.5199 REMARK 3 T TENSOR REMARK 3 T11: 0.4035 T22: 0.4357 REMARK 3 T33: 0.4036 T12: 0.1769 REMARK 3 T13: 0.0556 T23: 0.0338 REMARK 3 L TENSOR REMARK 3 L11: 6.6223 L22: 5.8805 REMARK 3 L33: 17.5065 L12: 0.8651 REMARK 3 L13: -1.3872 L23: 0.4940 REMARK 3 S TENSOR REMARK 3 S11: -0.4751 S12: -0.5936 S13: -0.2563 REMARK 3 S21: 0.8733 S22: 0.3045 S23: -0.0909 REMARK 3 S31: -0.2975 S32: 0.5286 S33: 0.1706 REMARK 3 REMARK 3 TLS GROUP : 7 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 34 B 52 REMARK 3 ORIGIN FOR THE GROUP (A): 33.7546 36.5654 22.0683 REMARK 3 T TENSOR REMARK 3 T11: 0.2760 T22: 0.3486 REMARK 3 T33: 0.5927 T12: 0.0434 REMARK 3 T13: 0.1862 T23: -0.1168 REMARK 3 L TENSOR REMARK 3 L11: 14.6499 L22: 8.0981 REMARK 3 L33: 28.9417 L12: 4.5764 REMARK 3 L13: 12.0445 L23: 5.9282 REMARK 3 S TENSOR REMARK 3 S11: -0.4288 S12: 0.6432 S13: -1.5564 REMARK 3 S21: 0.0458 S22: 0.5486 S23: 0.7015 REMARK 3 S31: 0.1851 S32: -0.4947 S33: -0.1197 REMARK 3 REMARK 3 TLS GROUP : 8 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 53 B 76 REMARK 3 ORIGIN FOR THE GROUP (A): 50.5132 36.5182 16.5270 REMARK 3 T TENSOR REMARK 3 T11: 0.4012 T22: 0.4438 REMARK 3 T33: 0.9679 T12: -0.0142 REMARK 3 T13: 0.4165 T23: -0.2176 REMARK 3 L TENSOR REMARK 3 L11: 3.7979 L22: 10.8601 REMARK 3 L33: 5.3979 L12: -1.6466 REMARK 3 L13: 2.6617 L23: 3.8301 REMARK 3 S TENSOR REMARK 3 S11: -0.2818 S12: 0.3634 S13: -0.6882 REMARK 3 S21: -0.5170 S22: 0.7116 S23: -1.2179 REMARK 3 S31: -0.0516 S32: 0.7124 S33: -0.4298 REMARK 3 REMARK 3 TLS GROUP : 9 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 77 B 85 REMARK 3 ORIGIN FOR THE GROUP (A): 41.0617 28.0286 11.4994 REMARK 3 T TENSOR REMARK 3 T11: 0.8640 T22: 1.0774 REMARK 3 T33: 1.4070 T12: -0.2479 REMARK 3 T13: 0.3590 T23: -0.6732 REMARK 3 L TENSOR REMARK 3 L11: 1.8446 L22: 40.5368 REMARK 3 L33: 1.2009 L12: 0.0934 REMARK 3 L13: 1.3278 L23: 2.6391 REMARK 3 S TENSOR REMARK 3 S11: 0.2015 S12: -0.3817 S13: -0.9589 REMARK 3 S21: -1.7599 S22: 0.0993 S23: 1.0623 REMARK 3 S31: 0.0619 S32: -0.5568 S33: -0.3008 REMARK 3 REMARK 3 TLS GROUP : 10 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 86 B 100 REMARK 3 ORIGIN FOR THE GROUP (A): 41.7042 44.0075 20.9118 REMARK 3 T TENSOR REMARK 3 T11: 0.4122 T22: 0.4397 REMARK 3 T33: 0.3599 T12: 0.0396 REMARK 3 T13: 0.0342 T23: -0.0046 REMARK 3 L TENSOR REMARK 3 L11: 13.1408 L22: 6.4830 REMARK 3 L33: 4.7259 L12: 0.5082 REMARK 3 L13: -4.8189 L23: 1.8187 REMARK 3 S TENSOR REMARK 3 S11: -0.5278 S12: 0.1359 S13: -0.4902 REMARK 3 S21: 0.1643 S22: 0.4404 S23: -0.3889 REMARK 3 S31: -0.1854 S32: 0.1144 S33: 0.0874 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 4LID COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 31-JUL-13. REMARK 100 THE DEPOSITION ID IS D_1000080667. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 14-APR-13 REMARK 200 TEMPERATURE (KELVIN) : 102.5 REMARK 200 PH : 5.6 REMARK 200 NUMBER OF CRYSTALS USED : 2 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRL REMARK 200 BEAMLINE : BL12-2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9795 REMARK 200 MONOCHROMATOR : LIQUID NITROGEN-COOLED DOUBLE REMARK 200 CRYSTAL REMARK 200 OPTICS : K-B FOCUSING MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : AUTOXDS REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 8953 REMARK 200 RESOLUTION RANGE HIGH (A) : 3.000 REMARK 200 RESOLUTION RANGE LOW (A) : 38.250 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 1.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 12.50 REMARK 200 R MERGE (I) : 0.01400 REMARK 200 R SYM (I) : 0.04700 REMARK 200 FOR THE DATA SET : 7.9300 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 3.00 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.16 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 12.50 REMARK 200 R MERGE FOR SHELL (I) : 0.68800 REMARK 200 R SYM FOR SHELL (I) : 0.20000 REMARK 200 FOR SHELL : 5.200 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 70.05 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 4.11 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 10MG/ML A100, 0.6-0.9M AMMONIUM REMARK 280 DIHYDROGEN PHOSPHATE, 20-30% GLYCEROL, 0.7M MES, PH 5.6, VAPOR REMARK 280 DIFFUSION, HANGING DROP, TEMPERATURE 296K. 10MG/ML REMARK 280 SELENOMETHIONINE INCORPORATED A100,0.6-0.9M AMMONIUM DIHYDROGEN REMARK 280 PHOSPHATE, 20-30% GLYCEROL, 0.7M MES, PH 5.6, VAPOR DIFFUSION, REMARK 280 HANGING DROP, TEMPERATURE 296K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 63 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z REMARK 290 3555 -X+Y,-X,Z REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+1/2 REMARK 290 6555 X-Y,X,Z+1/2 REMARK 290 7555 Y,X,-Z REMARK 290 8555 X-Y,-Y,-Z REMARK 290 9555 -X,-X+Y,-Z REMARK 290 10555 -Y,-X,-Z+1/2 REMARK 290 11555 -X+Y,Y,-Z+1/2 REMARK 290 12555 X,X-Y,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 30.86350 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 30.86350 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 30.86350 REMARK 290 SMTRY1 7 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 7 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 9 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 10 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 10 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 30.86350 REMARK 290 SMTRY1 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 30.86350 REMARK 290 SMTRY1 12 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 12 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 30.86350 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: THE BIOLOGICAL ASSEMBLY IS A DODECAMER GENERATED FROM THE REMARK 300 DIMER IN THE ASYMMETRIC UNIT BY THE OPERATIONS: X,Y,Z ; -Y+1,-X+1,- REMARK 300 Z+1/2 ; -Y+1,X-Y,Z ; X,X-Y,-Z+1/2 ; -X+Y+1,-X+1,Z ; AND -X+Y+1,Y,-Z+ REMARK 300 1/2 REMARK 350 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: REMARK 300 DODECAMERIC REMARK 350 SOFTWARE USED: PISA V1.47 [21/3/2013] REMARK REMARK 300 350 TOTAL BURIED SURFACE AREA: 29840 ANGSTROM**2 REMARK 350 SURFACE REMARK 300 AREA FOR THE COMPLEX: 49380 ANGSTROM**2 REMARK 350 CHANGE IN REMARK 300 SOLVENT FREE ENERGY: -180 KCAL/MOL REMARK 350 APPLY THE FOLLOWING REMARK 300 TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 REMARK 300 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 300 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 300 BIOMT1 2 0.500000 -0.866025 0.000000 76.49950 REMARK 350 BIOMT2 2 - REMARK 300 0.866025 -0.500000 0.000000 132.50102 REMARK 350 BIOMT3 2 0.000000 REMARK 300 0.000000 -1.000000 30.86350 REMARK 350 BIOMT1 3 -0.500000 -0.866025 REMARK 300 0.000000 152.99900 REMARK 350 BIOMT2 3 0.866025 -0.500000 0.000000 REMARK 300 0.00000 REMARK 350 BIOMT3 3 0.000000 0.000000 1.000000 0.00000 REMARK 300 REMARK 350 BIOMT1 4 0.500000 0.866025 0.000000 0.00000 REMARK 350 REMARK 300 BIOMT2 4 0.866025 -0.500000 0.000000 0.00000 REMARK 350 BIOMT3 4 REMARK 300 0.000000 0.000000 -1.000000 30.86350 REMARK 350 BIOMT1 5 -0.500000 REMARK 300 0.866025 0.000000 76.49950 REMARK 350 BIOMT2 5 -0.866025 -0.500000 REMARK 300 0.000000 132.50102 REMARK 350 BIOMT3 5 0.000000 0.000000 1.000000 REMARK 300 0.00000 REMARK 350 BIOMT1 6 -1.000000 0.000000 0.000000 152.99900 REMARK 300 REMARK 350 BIOMT2 6 0.000000 1.000000 0.000000 0.00000 REMARK 350 REMARK 300 BIOMT3 6 0.000000 0.000000 -1.000000 30.86350 REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DODECAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DODECAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 29840 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 49380 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -180.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -0.500000 -0.866025 0.000000 152.99900 REMARK 350 BIOMT2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 3 -0.500000 0.866025 0.000000 76.49950 REMARK 350 BIOMT2 3 -0.866025 -0.500000 0.000000 132.50102 REMARK 350 BIOMT3 3 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 4 0.500000 -0.866025 0.000000 76.49950 REMARK 350 BIOMT2 4 -0.866025 -0.500000 0.000000 132.50102 REMARK 350 BIOMT3 4 0.000000 0.000000 -1.000000 30.86350 REMARK 350 BIOMT1 5 -1.000000 0.000000 0.000000 152.99900 REMARK 350 BIOMT2 5 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 5 0.000000 0.000000 -1.000000 30.86350 REMARK 350 BIOMT1 6 0.500000 0.866025 0.000000 0.00000 REMARK 350 BIOMT2 6 0.866025 -0.500000 0.000000 0.00000 REMARK 350 BIOMT3 6 0.000000 0.000000 -1.000000 30.86350 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 VAL A 2 REMARK 465 SER A 3 REMARK 465 PRO A 4 REMARK 465 GLN A 5 REMARK 465 THR A 6 REMARK 465 ARG A 7 REMARK 465 LYS A 8 REMARK 465 GLU A 9 REMARK 465 GLY A 26 REMARK 465 ARG A 27 REMARK 465 LYS A 28 REMARK 465 PRO A 29 REMARK 465 TYR A 30 REMARK 465 HIS A 101 REMARK 465 HIS A 102 REMARK 465 HIS A 103 REMARK 465 HIS A 104 REMARK 465 HIS A 105 REMARK 465 HIS A 106 REMARK 465 MET B 1 REMARK 465 VAL B 2 REMARK 465 SER B 3 REMARK 465 PRO B 4 REMARK 465 GLN B 5 REMARK 465 THR B 6 REMARK 465 ARG B 7 REMARK 465 LYS B 8 REMARK 465 GLU B 9 REMARK 465 GLU B 10 REMARK 465 GLU B 11 REMARK 465 LEU B 12 REMARK 465 LEU B 13 REMARK 465 GLU B 14 REMARK 465 HIS B 101 REMARK 465 HIS B 102 REMARK 465 HIS B 103 REMARK 465 HIS B 104 REMARK 465 HIS B 105 REMARK 465 HIS B 106 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 CE1 TYR A 33 CE1 TYR A 51 2.07 REMARK 500 OD2 ASP A 99 ND2 ASN B 17 2.08 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 OE1 GLU A 75 OE2 GLU A 86 10665 1.51 REMARK 500 OE1 GLU A 75 CD GLU A 86 10665 2.00 REMARK 500 OE1 GLU A 75 OE1 GLU A 86 10665 2.08 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLU A 42 16.11 54.06 REMARK 500 ASN A 54 52.27 -95.71 REMARK 500 GLN A 80 -34.42 -38.82 REMARK 500 GLU B 42 15.68 52.83 REMARK 500 ASN B 54 50.44 -119.26 REMARK 500 ASP B 78 -78.83 -109.42 REMARK 500 REMARK 500 REMARK: NULL DBREF 4LID A 1 100 UNP P20194 A100_SSV1 1 100 DBREF 4LID B 1 100 UNP P20194 A100_SSV1 1 100 SEQADV 4LID HIS A 101 UNP P20194 EXPRESSION TAG SEQADV 4LID HIS A 102 UNP P20194 EXPRESSION TAG SEQADV 4LID HIS A 103 UNP P20194 EXPRESSION TAG SEQADV 4LID HIS A 104 UNP P20194 EXPRESSION TAG SEQADV 4LID HIS A 105 UNP P20194 EXPRESSION TAG SEQADV 4LID HIS A 106 UNP P20194 EXPRESSION TAG SEQADV 4LID HIS B 101 UNP P20194 EXPRESSION TAG SEQADV 4LID HIS B 102 UNP P20194 EXPRESSION TAG SEQADV 4LID HIS B 103 UNP P20194 EXPRESSION TAG SEQADV 4LID HIS B 104 UNP P20194 EXPRESSION TAG SEQADV 4LID HIS B 105 UNP P20194 EXPRESSION TAG SEQADV 4LID HIS B 106 UNP P20194 EXPRESSION TAG SEQRES 1 A 106 MET VAL SER PRO GLN THR ARG LYS GLU GLU GLU LEU LEU SEQRES 2 A 106 GLU LYS GLN ASN SER VAL PHE TYR LEU LEU THR LEU GLY SEQRES 3 A 106 ARG LYS PRO TYR GLY SER TYR LEU HIS ILE LYS ILE GLU SEQRES 4 A 106 LEU ASP GLU ASP GLU LYS LEU GLU LYS GLU ILE TYR ALA SEQRES 5 A 106 ASP ASN ILE LYS LEU GLU ASN GLU LEU ARG GLN LEU LYS SEQRES 6 A 106 ARG LEU TYR GLU VAL TYR GLN SER VAL GLU ILE ASP ASP SEQRES 7 A 106 ALA GLN LYS ALA ILE GLN LYS GLU ALA LEU LEU THR ILE SEQRES 8 A 106 ALA LYS ILE LEU SER VAL PHE ASP PHE HIS HIS HIS HIS SEQRES 9 A 106 HIS HIS SEQRES 1 B 106 MET VAL SER PRO GLN THR ARG LYS GLU GLU GLU LEU LEU SEQRES 2 B 106 GLU LYS GLN ASN SER VAL PHE TYR LEU LEU THR LEU GLY SEQRES 3 B 106 ARG LYS PRO TYR GLY SER TYR LEU HIS ILE LYS ILE GLU SEQRES 4 B 106 LEU ASP GLU ASP GLU LYS LEU GLU LYS GLU ILE TYR ALA SEQRES 5 B 106 ASP ASN ILE LYS LEU GLU ASN GLU LEU ARG GLN LEU LYS SEQRES 6 B 106 ARG LEU TYR GLU VAL TYR GLN SER VAL GLU ILE ASP ASP SEQRES 7 B 106 ALA GLN LYS ALA ILE GLN LYS GLU ALA LEU LEU THR ILE SEQRES 8 B 106 ALA LYS ILE LEU SER VAL PHE ASP PHE HIS HIS HIS HIS SEQRES 9 B 106 HIS HIS HELIX 1 1 LYS A 56 GLN A 72 1 17 HELIX 2 2 ASP A 78 PHE A 100 1 23 HELIX 3 3 LYS B 56 GLN B 72 1 17 HELIX 4 4 ASP B 78 PHE B 100 1 23 SHEET 1 A 6 GLU A 44 TYR A 51 0 SHEET 2 A 6 TYR A 33 LEU A 40 -1 N ILE A 36 O LYS A 48 SHEET 3 A 6 LEU A 12 THR A 24 -1 N LEU A 22 O LYS A 37 SHEET 4 A 6 GLN B 16 LYS B 28 -1 O VAL B 19 N TYR A 21 SHEET 5 A 6 GLY B 31 LEU B 40 -1 O HIS B 35 N THR B 24 SHEET 6 A 6 GLU B 44 TYR B 51 -1 O LEU B 46 N ILE B 38 CRYST1 152.999 152.999 61.727 90.00 90.00 120.00 P 63 2 2 24 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.006536 0.003774 0.000000 0.00000 SCALE2 0.000000 0.007547 0.000000 0.00000 SCALE3 0.000000 0.000000 0.016200 0.00000 MTRIX1 1 1.000000 0.000000 0.000000 0.00000 1 MTRIX2 1 0.000000 1.000000 0.000000 0.00000 1 MTRIX3 1 0.000000 0.000000 1.000000 0.00000 1 MTRIX1 2 0.997449 0.024832 0.066928 -1.79538 1 MTRIX2 2 0.022809 -0.999264 0.030831 86.53544 1 MTRIX3 2 0.067645 -0.029226 -0.997281 27.88598 1