HEADER CHAPERONE 04-JUL-13 4LJ8 TITLE CLPB NBD2 R621Q FROM T. THERMOPHILUS IN COMPLEX WITH ADP COMPND MOL_ID: 1; COMPND 2 MOLECULE: CHAPERONE PROTEIN CLPB; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: NUCLEOTIDE BINDING DOMAIN 2, UNP RESIDUES 520-854; COMPND 5 ENGINEERED: YES; COMPND 6 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: THERMUS THERMOPHILUS; SOURCE 3 ORGANISM_TAXID: 300852; SOURCE 4 STRAIN: HB8; SOURCE 5 GENE: CLPB; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3) RIL; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET28A KEYWDS AAA+ PROTEIN, NUCLEOTIDE BINDING DOMAIN, MOLECULAR CHAPERONE, KEYWDS 2 DISAGGREGASE, CHAPERONE EXPDTA X-RAY DIFFRACTION AUTHOR C.ZEYMER,T.R.M.BARENDS,N.D.WERBECK,I.SCHLICHTING,J.REINSTEIN REVDAT 4 08-NOV-23 4LJ8 1 REMARK SEQADV REVDAT 3 15-NOV-17 4LJ8 1 REMARK REVDAT 2 09-APR-14 4LJ8 1 JRNL REVDAT 1 12-FEB-14 4LJ8 0 JRNL AUTH C.ZEYMER,T.R.M.BARENDS,N.D.WERBECK,I.SCHLICHTING,J.REINSTEIN JRNL TITL ELEMENTS IN NUCLEOTIDE SENSING AND HYDROLYSIS OF THE AAA+ JRNL TITL 2 DISAGGREGATION MACHINE CLPB: A STRUCTURE-BASED MECHANISTIC JRNL TITL 3 DISSECTION OF A MOLECULAR MOTOR JRNL REF ACTA CRYSTALLOGR.,SECT.D V. 70 582 2014 JRNL REFN ISSN 0907-4449 JRNL PMID 24531492 JRNL DOI 10.1107/S1399004713030629 REMARK 2 REMARK 2 RESOLUTION. 2.10 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0102 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.10 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 43.78 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 21811 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.190 REMARK 3 R VALUE (WORKING SET) : 0.188 REMARK 3 FREE R VALUE : 0.233 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.700 REMARK 3 FREE R VALUE TEST SET COUNT : 1030 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.10 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.16 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1527 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.81 REMARK 3 BIN R VALUE (WORKING SET) : 0.2380 REMARK 3 BIN FREE R VALUE SET COUNT : 70 REMARK 3 BIN FREE R VALUE : 0.3280 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2555 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 27 REMARK 3 SOLVENT ATOMS : 47 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 40.40 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 47.53 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -6.38000 REMARK 3 B22 (A**2) : -6.38000 REMARK 3 B33 (A**2) : 12.77000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.043 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.038 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.136 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 8.979 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.959 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.926 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2626 ; 0.008 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 2608 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3556 ; 1.276 ; 1.999 REMARK 3 BOND ANGLES OTHERS (DEGREES): 5979 ; 0.754 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 320 ; 5.693 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 122 ;34.188 ;23.115 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 470 ;14.750 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 29 ;16.284 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 408 ; 0.066 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2906 ; 0.005 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 582 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TWIN DETAILS REMARK 3 NUMBER OF TWIN DOMAINS : 2 REMARK 3 TWIN DOMAIN : 1 REMARK 3 TWIN OPERATOR : H, K, L REMARK 3 TWIN FRACTION : 0.222 REMARK 3 TWIN DOMAIN : 2 REMARK 3 TWIN OPERATOR : K, H, -L REMARK 3 TWIN FRACTION : 0.778 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 3 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 2 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 550 A 709 REMARK 3 RESIDUE RANGE : A 741 A 755 REMARK 3 ORIGIN FOR THE GROUP (A): 8.7860 25.9410 -9.0610 REMARK 3 T TENSOR REMARK 3 T11: 0.1351 T22: 0.1478 REMARK 3 T33: 0.0477 T12: 0.0442 REMARK 3 T13: -0.0147 T23: 0.0186 REMARK 3 L TENSOR REMARK 3 L11: 1.1489 L22: 1.0901 REMARK 3 L33: 1.0016 L12: -0.2773 REMARK 3 L13: 0.1277 L23: 0.3187 REMARK 3 S TENSOR REMARK 3 S11: 0.0381 S12: 0.1731 S13: 0.0665 REMARK 3 S21: 0.0044 S22: -0.1694 S23: -0.0993 REMARK 3 S31: 0.0719 S32: 0.0292 S33: 0.1313 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 710 A 740 REMARK 3 ORIGIN FOR THE GROUP (A): -4.6660 17.9390 11.7410 REMARK 3 T TENSOR REMARK 3 T11: 0.2768 T22: 0.1402 REMARK 3 T33: 0.0416 T12: -0.0390 REMARK 3 T13: 0.0259 T23: 0.0340 REMARK 3 L TENSOR REMARK 3 L11: 9.5792 L22: 3.0216 REMARK 3 L33: 4.8680 L12: -3.3377 REMARK 3 L13: -3.7538 L23: 2.7611 REMARK 3 S TENSOR REMARK 3 S11: -0.3017 S12: -0.2819 S13: -0.5196 REMARK 3 S21: 0.4288 S22: 0.0097 S23: 0.1683 REMARK 3 S31: 0.5094 S32: -0.2115 S33: 0.2920 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 756 A 849 REMARK 3 ORIGIN FOR THE GROUP (A): -21.9280 40.2480 -10.8730 REMARK 3 T TENSOR REMARK 3 T11: 0.1094 T22: 0.1245 REMARK 3 T33: 0.3199 T12: 0.0645 REMARK 3 T13: -0.0648 T23: -0.1053 REMARK 3 L TENSOR REMARK 3 L11: 3.0126 L22: 1.1737 REMARK 3 L33: 1.4908 L12: 0.1862 REMARK 3 L13: 1.7430 L23: -0.2207 REMARK 3 S TENSOR REMARK 3 S11: -0.2738 S12: -0.1758 S13: 0.5341 REMARK 3 S21: 0.0639 S22: -0.0145 S23: 0.4219 REMARK 3 S31: -0.1828 S32: -0.0322 S33: 0.2882 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: U VALUES: WITH TLS ADDED HYDROGENS HAVE REMARK 3 BEEN ADDED IN THE RIDING POSITIONS REMARK 4 REMARK 4 4LJ8 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 16-JUL-13. REMARK 100 THE DEPOSITION ID IS D_1000080697. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 13-JUN-13 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SLS REMARK 200 BEAMLINE : X10SA REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9170 REMARK 200 MONOCHROMATOR : SI(111) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : PSI PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 21813 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.100 REMARK 200 RESOLUTION RANGE LOW (A) : 44.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 6.400 REMARK 200 R MERGE (I) : 0.05300 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 19.4000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.10 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.20 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.9 REMARK 200 DATA REDUNDANCY IN SHELL : 4.20 REMARK 200 R MERGE FOR SHELL (I) : 0.39500 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 3.200 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 4LJ5 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 50.49 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.48 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1M TRIS/HCL, 15% ISOPROPANOL, 50MM REMARK 280 MAGNESIUM CHLORIDE, 2MM ADP, PH 7.5, VAPOR DIFFUSION, HANGING REMARK 280 DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 65 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+1/6 REMARK 290 6555 X-Y,X,Z+5/6 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 79.66667 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 39.83333 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 59.75000 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 19.91667 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 99.58333 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: THE FULL PROTEIN FORMS A RANGE OF OLIGOMERS, AND THIS REMARK 300 DOMAIN FORMS DIMERS IN SOLUTION UNDER CERTAIN CIRCUMSTANCES. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 516 REMARK 465 SER A 517 REMARK 465 ARG A 546 REMARK 465 GLU A 547 REMARK 465 LYS A 548 REMARK 465 TYR A 643 REMARK 465 VAL A 644 REMARK 465 GLY A 645 REMARK 465 TYR A 646 REMARK 465 GLU A 647 REMARK 465 GLU A 648 REMARK 465 ALA A 850 REMARK 465 ARG A 851 REMARK 465 VAL A 852 REMARK 465 GLU A 853 REMARK 465 ALA A 854 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU A 545 CG CD OE1 OE2 REMARK 470 ARG A 551 CB CG CD NE CZ NH1 NH2 REMARK 470 GLU A 629 CG CD OE1 OE2 REMARK 470 PRO A 849 O REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 614 -12.56 72.80 REMARK 500 GLU A 629 58.10 -118.51 REMARK 500 LYS A 630 -76.63 76.55 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ADP A 901 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4LJ4 RELATED DB: PDB REMARK 900 RELATED ID: 4LJ5 RELATED DB: PDB REMARK 900 RELATED ID: 4LJ6 RELATED DB: PDB REMARK 900 RELATED ID: 4LJ7 RELATED DB: PDB REMARK 900 RELATED ID: 4LJ9 RELATED DB: PDB REMARK 900 RELATED ID: 4LJA RELATED DB: PDB DBREF 4LJ8 A 520 854 UNP Q9RA63 CLPB_THET8 520 854 SEQADV 4LJ8 GLY A 516 UNP Q9RA63 EXPRESSION TAG SEQADV 4LJ8 SER A 517 UNP Q9RA63 EXPRESSION TAG SEQADV 4LJ8 HIS A 518 UNP Q9RA63 EXPRESSION TAG SEQADV 4LJ8 MET A 519 UNP Q9RA63 EXPRESSION TAG SEQADV 4LJ8 GLN A 621 UNP Q9RA63 ARG 621 ENGINEERED MUTATION SEQRES 1 A 339 GLY SER HIS MET GLU VAL THR GLU GLU ASP ILE ALA GLU SEQRES 2 A 339 ILE VAL SER ARG TRP THR GLY ILE PRO VAL SER LYS LEU SEQRES 3 A 339 LEU GLU GLY GLU ARG GLU LYS LEU LEU ARG LEU GLU GLU SEQRES 4 A 339 GLU LEU HIS LYS ARG VAL VAL GLY GLN ASP GLU ALA ILE SEQRES 5 A 339 ARG ALA VAL ALA ASP ALA ILE ARG ARG ALA ARG ALA GLY SEQRES 6 A 339 LEU LYS ASP PRO ASN ARG PRO ILE GLY SER PHE LEU PHE SEQRES 7 A 339 LEU GLY PRO THR GLY VAL GLY LYS THR GLU LEU ALA LYS SEQRES 8 A 339 THR LEU ALA ALA THR LEU PHE ASP THR GLU GLU ALA MET SEQRES 9 A 339 ILE GLN ILE ASP MET THR GLU TYR MET GLU LYS HIS ALA SEQRES 10 A 339 VAL SER ARG LEU ILE GLY ALA PRO PRO GLY TYR VAL GLY SEQRES 11 A 339 TYR GLU GLU GLY GLY GLN LEU THR GLU ALA VAL ARG ARG SEQRES 12 A 339 ARG PRO TYR SER VAL ILE LEU PHE ASP GLU ILE GLU LYS SEQRES 13 A 339 ALA HIS PRO ASP VAL PHE ASN ILE LEU LEU GLN ILE LEU SEQRES 14 A 339 ASP ASP GLY ARG LEU THR ASP SER HIS GLY ARG THR VAL SEQRES 15 A 339 ASP PHE ARG ASN THR VAL ILE ILE LEU THR SER ASN LEU SEQRES 16 A 339 GLY SER PRO LEU ILE LEU GLU GLY LEU GLN LYS GLY TRP SEQRES 17 A 339 PRO TYR GLU ARG ILE ARG ASP GLU VAL PHE LYS VAL LEU SEQRES 18 A 339 GLN GLN HIS PHE ARG PRO GLU PHE LEU ASN ARG LEU ASP SEQRES 19 A 339 GLU ILE VAL VAL PHE ARG PRO LEU THR LYS GLU GLN ILE SEQRES 20 A 339 ARG GLN ILE VAL GLU ILE GLN LEU SER TYR LEU ARG ALA SEQRES 21 A 339 ARG LEU ALA GLU LYS ARG ILE SER LEU GLU LEU THR GLU SEQRES 22 A 339 ALA ALA LYS ASP PHE LEU ALA GLU ARG GLY TYR ASP PRO SEQRES 23 A 339 VAL PHE GLY ALA ARG PRO LEU ARG ARG VAL ILE GLN ARG SEQRES 24 A 339 GLU LEU GLU THR PRO LEU ALA GLN LYS ILE LEU ALA GLY SEQRES 25 A 339 GLU VAL LYS GLU GLY ASP ARG VAL GLN VAL ASP VAL GLY SEQRES 26 A 339 PRO ALA GLY LEU VAL PHE ALA VAL PRO ALA ARG VAL GLU SEQRES 27 A 339 ALA HET ADP A 901 27 HETNAM ADP ADENOSINE-5'-DIPHOSPHATE FORMUL 2 ADP C10 H15 N5 O10 P2 FORMUL 3 HOH *47(H2 O) HELIX 1 1 THR A 522 GLY A 535 1 14 HELIX 2 2 PRO A 537 LEU A 542 1 6 HELIX 3 3 ARG A 551 VAL A 560 1 10 HELIX 4 4 GLN A 563 ALA A 579 1 17 HELIX 5 5 GLY A 600 ASP A 614 1 15 HELIX 6 6 THR A 615 GLU A 617 5 3 HELIX 7 7 THR A 625 TYR A 627 5 3 HELIX 8 8 HIS A 631 GLY A 638 1 8 HELIX 9 9 GLY A 650 ARG A 659 1 10 HELIX 10 10 ILE A 669 ALA A 672 5 4 HELIX 11 11 HIS A 673 GLY A 687 1 15 HELIX 12 12 GLY A 711 GLY A 722 1 12 HELIX 13 13 PRO A 724 PHE A 740 1 17 HELIX 14 14 ARG A 741 ASN A 746 1 6 HELIX 15 15 THR A 758 LEU A 770 1 13 HELIX 16 16 LEU A 770 GLU A 779 1 10 HELIX 17 17 THR A 787 TYR A 799 1 13 HELIX 18 18 PRO A 807 LEU A 816 1 10 HELIX 19 19 LEU A 816 ALA A 826 1 11 SHEET 1 A 5 MET A 619 ASP A 623 0 SHEET 2 A 5 SER A 662 ASP A 667 1 O LEU A 665 N ILE A 622 SHEET 3 A 5 THR A 702 THR A 707 1 O VAL A 703 N ILE A 664 SHEET 4 A 5 GLY A 589 LEU A 594 1 N PHE A 593 O LEU A 706 SHEET 5 A 5 GLU A 750 VAL A 753 1 O VAL A 752 N LEU A 594 SHEET 1 B 2 ARG A 688 THR A 690 0 SHEET 2 B 2 THR A 696 ASP A 698 -1 O VAL A 697 N LEU A 689 SHEET 1 C 3 SER A 783 LEU A 786 0 SHEET 2 C 3 ARG A 834 GLY A 840 1 O VAL A 835 N GLU A 785 SHEET 3 C 3 GLY A 843 ALA A 847 -1 O GLY A 843 N GLY A 840 SITE 1 AC1 16 ARG A 559 VAL A 560 VAL A 561 THR A 597 SITE 2 AC1 16 GLY A 598 VAL A 599 GLY A 600 LYS A 601 SITE 3 AC1 16 THR A 602 ILE A 765 GLN A 769 ALA A 805 SITE 4 AC1 16 ARG A 806 HOH A1001 HOH A1024 HOH A1028 CRYST1 74.300 74.300 119.500 90.00 90.00 120.00 P 65 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.013459 0.007771 0.000000 0.00000 SCALE2 0.000000 0.015541 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008368 0.00000