HEADER HYDROLASE 05-JUL-13 4LK4 TITLE STRUCTURE OF VIBRIO CHOLERAE VESB PROTEASE COMPND MOL_ID: 1; COMPND 2 MOLECULE: VESB PROTEASE; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: UNP RESIDUES 24-373; COMPND 5 SYNONYM: VC1200; COMPND 6 EC: 3.-.-.-; COMPND 7 ENGINEERED: YES; COMPND 8 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: VIBRIO CHOLERAE; SOURCE 3 ORGANISM_TAXID: 44104; SOURCE 4 STRAIN: 569B; SOURCE 5 GENE: VC1200; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: ROSETTA(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PCDF-22B KEYWDS TRYPSIN, PEPTIDASE S1 FAMILY, ENDOPEPTIDASE, DUF3466, SECRETED KEYWDS 2 PROTEIN, EXTRACELLULAR, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR K.V.KOROTKOV,J.R.DELAROSA,W.G.J.HOL REVDAT 3 20-SEP-23 4LK4 1 SEQADV REVDAT 2 09-APR-14 4LK4 1 JRNL REVDAT 1 05-FEB-14 4LK4 0 JRNL AUTH S.GADWAL,K.V.KOROTKOV,J.R.DELAROSA,W.G.HOL,M.SANDKVIST JRNL TITL FUNCTIONAL AND STRUCTURAL CHARACTERIZATION OF VIBRIO JRNL TITL 2 CHOLERAE EXTRACELLULAR SERINE PROTEASE B, VESB. JRNL REF J.BIOL.CHEM. V. 289 8288 2014 JRNL REFN ISSN 0021-9258 JRNL PMID 24459146 JRNL DOI 10.1074/JBC.M113.525261 REMARK 2 REMARK 2 RESOLUTION. 2.40 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.40 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 46.30 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.5 REMARK 3 NUMBER OF REFLECTIONS : 20306 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.190 REMARK 3 R VALUE (WORKING SET) : 0.187 REMARK 3 FREE R VALUE : 0.236 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1070 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.40 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.46 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1471 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.87 REMARK 3 BIN R VALUE (WORKING SET) : 0.2740 REMARK 3 BIN FREE R VALUE SET COUNT : 76 REMARK 3 BIN FREE R VALUE : 0.2910 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2465 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 93 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 56.78 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 59.78 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.30000 REMARK 3 B22 (A**2) : 0.30000 REMARK 3 B33 (A**2) : -0.60000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.231 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.205 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.163 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 13.979 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.958 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.929 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2514 ; 0.012 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 2328 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3424 ; 1.466 ; 1.941 REMARK 3 BOND ANGLES OTHERS (DEGREES): 5326 ; 0.781 ; 3.002 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 322 ; 6.153 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 110 ;33.664 ;24.273 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 383 ;14.366 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 14 ;19.144 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 395 ; 0.088 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2914 ; 0.005 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 594 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1300 ; 1.191 ; 2.255 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1299 ; 1.192 ; 2.255 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1618 ; 1.941 ; 3.383 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 9 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 32 A 55 REMARK 3 ORIGIN FOR THE GROUP (A): 30.0970 14.1570 4.8880 REMARK 3 T TENSOR REMARK 3 T11: 0.3944 T22: 0.3060 REMARK 3 T33: 0.0655 T12: 0.0341 REMARK 3 T13: -0.0178 T23: 0.0008 REMARK 3 L TENSOR REMARK 3 L11: 5.2082 L22: 3.3848 REMARK 3 L33: 4.5133 L12: -0.5203 REMARK 3 L13: -0.8572 L23: -1.1124 REMARK 3 S TENSOR REMARK 3 S11: -0.0074 S12: 0.1067 S13: -0.1723 REMARK 3 S21: -0.2941 S22: 0.0113 S23: -0.0453 REMARK 3 S31: 0.3439 S32: 0.4846 S33: -0.0039 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 56 A 162 REMARK 3 ORIGIN FOR THE GROUP (A): 31.3600 11.7400 15.9380 REMARK 3 T TENSOR REMARK 3 T11: 0.3421 T22: 0.3105 REMARK 3 T33: 0.0777 T12: 0.0762 REMARK 3 T13: 0.0355 T23: 0.0401 REMARK 3 L TENSOR REMARK 3 L11: 2.3523 L22: 1.7030 REMARK 3 L33: 2.8150 L12: -0.0564 REMARK 3 L13: 0.3424 L23: -0.5647 REMARK 3 S TENSOR REMARK 3 S11: -0.0477 S12: -0.1838 S13: -0.2334 REMARK 3 S21: -0.0362 S22: 0.1446 S23: 0.0971 REMARK 3 S31: 0.1901 S32: 0.0401 S33: -0.0969 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 163 A 182 REMARK 3 ORIGIN FOR THE GROUP (A): 30.7030 20.3400 2.9420 REMARK 3 T TENSOR REMARK 3 T11: 0.6037 T22: 0.4948 REMARK 3 T33: 0.3104 T12: -0.0438 REMARK 3 T13: 0.1263 T23: -0.0445 REMARK 3 L TENSOR REMARK 3 L11: 15.4857 L22: 2.4574 REMARK 3 L33: 0.3546 L12: -4.8338 REMARK 3 L13: 0.2173 L23: -0.4045 REMARK 3 S TENSOR REMARK 3 S11: 0.3262 S12: 0.3218 S13: 0.5115 REMARK 3 S21: -0.3222 S22: -0.0519 S23: -0.0963 REMARK 3 S31: -0.1339 S32: 0.0609 S33: -0.2743 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 183 A 219 REMARK 3 ORIGIN FOR THE GROUP (A): 49.5440 21.5340 13.7950 REMARK 3 T TENSOR REMARK 3 T11: 0.3325 T22: 0.5664 REMARK 3 T33: 0.1451 T12: -0.0361 REMARK 3 T13: 0.1034 T23: -0.0584 REMARK 3 L TENSOR REMARK 3 L11: 4.2001 L22: 4.3164 REMARK 3 L33: 7.7891 L12: 2.9065 REMARK 3 L13: -0.9402 L23: 0.9619 REMARK 3 S TENSOR REMARK 3 S11: 0.1114 S12: -0.2294 S13: 0.2739 REMARK 3 S21: -0.1661 S22: 0.1101 S23: 0.0244 REMARK 3 S31: -0.6299 S32: 0.9762 S33: -0.2215 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 220 A 239 REMARK 3 ORIGIN FOR THE GROUP (A): 40.2410 13.1820 9.6040 REMARK 3 T TENSOR REMARK 3 T11: 0.3977 T22: 0.4821 REMARK 3 T33: 0.0804 T12: 0.1227 REMARK 3 T13: 0.0181 T23: -0.0170 REMARK 3 L TENSOR REMARK 3 L11: 5.7441 L22: 2.3323 REMARK 3 L33: 1.5696 L12: 0.8162 REMARK 3 L13: -1.3676 L23: -1.8427 REMARK 3 S TENSOR REMARK 3 S11: 0.0636 S12: 0.1402 S13: -0.2951 REMARK 3 S21: -0.1701 S22: -0.0891 S23: -0.0235 REMARK 3 S31: 0.1436 S32: 0.1168 S33: 0.0254 REMARK 3 REMARK 3 TLS GROUP : 6 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 240 A 248 REMARK 3 ORIGIN FOR THE GROUP (A): 39.8850 30.5050 10.0300 REMARK 3 T TENSOR REMARK 3 T11: 1.1577 T22: 1.9744 REMARK 3 T33: 1.1921 T12: -0.1192 REMARK 3 T13: 0.4220 T23: -0.3099 REMARK 3 L TENSOR REMARK 3 L11: 1.7662 L22: 0.9076 REMARK 3 L33: 8.1906 L12: 1.0818 REMARK 3 L13: 3.7108 L23: 2.5745 REMARK 3 S TENSOR REMARK 3 S11: -0.0794 S12: -0.1762 S13: -0.1193 REMARK 3 S21: -0.3145 S22: 0.5290 S23: -0.2628 REMARK 3 S31: -0.6343 S32: 0.3260 S33: -0.4496 REMARK 3 REMARK 3 TLS GROUP : 7 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 249 A 284 REMARK 3 ORIGIN FOR THE GROUP (A): 36.7920 11.4310 27.1460 REMARK 3 T TENSOR REMARK 3 T11: 0.3310 T22: 0.4332 REMARK 3 T33: 0.0848 T12: 0.1509 REMARK 3 T13: 0.0414 T23: 0.0922 REMARK 3 L TENSOR REMARK 3 L11: 1.6992 L22: 1.0897 REMARK 3 L33: 4.0522 L12: -0.5224 REMARK 3 L13: -0.4158 L23: 0.1651 REMARK 3 S TENSOR REMARK 3 S11: -0.0602 S12: -0.4423 S13: -0.0971 REMARK 3 S21: 0.1698 S22: 0.2636 S23: 0.1489 REMARK 3 S31: 0.0622 S32: 0.0980 S33: -0.2034 REMARK 3 REMARK 3 TLS GROUP : 8 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 285 A 328 REMARK 3 ORIGIN FOR THE GROUP (A): 30.9670 0.9930 41.9130 REMARK 3 T TENSOR REMARK 3 T11: 0.4467 T22: 0.8058 REMARK 3 T33: 0.1579 T12: 0.2681 REMARK 3 T13: 0.1513 T23: 0.3348 REMARK 3 L TENSOR REMARK 3 L11: 3.6947 L22: 5.1811 REMARK 3 L33: 7.6624 L12: -0.4305 REMARK 3 L13: 0.9137 L23: 0.3974 REMARK 3 S TENSOR REMARK 3 S11: -0.4957 S12: -1.2508 S13: -0.5264 REMARK 3 S21: 0.5090 S22: 0.5204 S23: 0.4932 REMARK 3 S31: 0.6322 S32: 0.0584 S33: -0.0248 REMARK 3 REMARK 3 TLS GROUP : 9 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 329 A 372 REMARK 3 ORIGIN FOR THE GROUP (A): 33.8200 8.5120 40.7920 REMARK 3 T TENSOR REMARK 3 T11: 0.4671 T22: 0.7637 REMARK 3 T33: 0.0945 T12: 0.2786 REMARK 3 T13: 0.0768 T23: 0.2048 REMARK 3 L TENSOR REMARK 3 L11: 3.1044 L22: 7.9261 REMARK 3 L33: 5.2892 L12: -0.2004 REMARK 3 L13: -0.8546 L23: 1.9884 REMARK 3 S TENSOR REMARK 3 S11: -0.2268 S12: -1.0341 S13: -0.0644 REMARK 3 S21: 0.3793 S22: 0.4199 S23: -0.0420 REMARK 3 S31: -0.0286 S32: 0.0379 S33: -0.1931 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 4LK4 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 18-JUL-13. REMARK 100 THE DEPOSITION ID IS D_1000080729. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 20-NOV-10 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 9.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ALS REMARK 200 BEAMLINE : 8.2.2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9999 REMARK 200 MONOCHROMATOR : DOUBLE CRYSTAL SI(111) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 21358 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.400 REMARK 200 RESOLUTION RANGE LOW (A) : 46.300 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.5 REMARK 200 DATA REDUNDANCY : 6.310 REMARK 200 R MERGE (I) : 0.06500 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 20.4300 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.40 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.46 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.9 REMARK 200 DATA REDUNDANCY IN SHELL : 6.48 REMARK 200 R MERGE FOR SHELL (I) : 1.07300 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.330 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MR-SAD REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 1EAX REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 64.13 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.43 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M TRIS-HCL, PH 9.0, 3.0 M SODIUM REMARK 280 CHLORIDE, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 42 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -Y+1/2,X+1/2,Z+1/2 REMARK 290 4555 Y+1/2,-X+1/2,Z+1/2 REMARK 290 5555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 6555 X+1/2,-Y+1/2,-Z+1/2 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 60.78500 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 60.78500 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 35.65500 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 60.78500 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 60.78500 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 35.65500 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 60.78500 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 60.78500 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 35.65500 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 60.78500 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 60.78500 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 35.65500 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 428 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 448 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 467 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 23 REMARK 465 GLU A 24 REMARK 465 SER A 25 REMARK 465 THR A 26 REMARK 465 ALA A 27 REMARK 465 ASP A 28 REMARK 465 ILE A 29 REMARK 465 SER A 30 REMARK 465 SER A 31 REMARK 465 VAL A 166 REMARK 465 GLN A 167 REMARK 465 SER A 168 REMARK 465 LYS A 169 REMARK 465 PRO A 170 REMARK 465 PRO A 171 REMARK 465 GLN A 172 REMARK 465 LYS A 214 REMARK 465 ASP A 215 REMARK 465 SER A 216 REMARK 465 CYS A 217 REMARK 465 CYS A 244 REMARK 465 ALA A 245 REMARK 465 LYS A 246 REMARK 465 THR A 247 REMARK 465 SER A 373 REMARK 465 GLU A 374 REMARK 465 ASN A 375 REMARK 465 LEU A 376 REMARK 465 TYR A 377 REMARK 465 PHE A 378 REMARK 465 GLN A 379 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 OG1 THR A 174 OG1 THR A 174 7555 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 TYR A 95 -68.22 -142.63 REMARK 500 GLN A 195 -118.80 59.69 REMARK 500 HIS A 196 48.60 34.98 REMARK 500 VAL A 325 -59.14 69.19 REMARK 500 REMARK 500 REMARK: NULL DBREF 4LK4 A 24 373 UNP Q9KSQ6 Q9KSQ6_VIBCH 24 373 SEQADV 4LK4 MET A 23 UNP Q9KSQ6 EXPRESSION TAG SEQADV 4LK4 ALA A 221 UNP Q9KSQ6 SER 221 ENGINEERED MUTATION SEQADV 4LK4 GLU A 374 UNP Q9KSQ6 EXPRESSION TAG SEQADV 4LK4 ASN A 375 UNP Q9KSQ6 EXPRESSION TAG SEQADV 4LK4 LEU A 376 UNP Q9KSQ6 EXPRESSION TAG SEQADV 4LK4 TYR A 377 UNP Q9KSQ6 EXPRESSION TAG SEQADV 4LK4 PHE A 378 UNP Q9KSQ6 EXPRESSION TAG SEQADV 4LK4 GLN A 379 UNP Q9KSQ6 EXPRESSION TAG SEQRES 1 A 357 MET GLU SER THR ALA ASP ILE SER SER ARG ILE ILE ASN SEQRES 2 A 357 GLY SER ASN ALA ASN SER ALA GLU TRP PRO SER ILE VAL SEQRES 3 A 357 ALA LEU VAL LYS ARG GLY ALA ASP ALA TYR GLN GLY GLN SEQRES 4 A 357 PHE CYS GLY GLY SER PHE LEU GLY GLY ARG TYR VAL LEU SEQRES 5 A 357 THR ALA ALA HIS CYS PHE ASP SER ARG SER ALA ALA SER SEQRES 6 A 357 VAL ASP VAL ILE ILE GLY ALA TYR ASP LEU ASN ASN SER SEQRES 7 A 357 SER GLN GLY GLU ARG ILE ALA ALA GLN LYS ILE TYR ARG SEQRES 8 A 357 HIS LEU SER TYR SER PRO SER ASN LEU LEU ASN ASP ILE SEQRES 9 A 357 ALA ILE VAL GLU LEU ALA GLN THR SER SER LEU PRO ALA SEQRES 10 A 357 ILE THR LEU ALA GLY PRO ALA THR ARG THR SER LEU PRO SEQRES 11 A 357 ALA LEU THR PRO LEU THR VAL ALA GLY TRP GLY ILE THR SEQRES 12 A 357 VAL GLN SER LYS PRO PRO GLN PHE THR PRO ILE LEU GLN SEQRES 13 A 357 GLU VAL ASP VAL ASP LEU VAL SER GLN SER LEU CYS GLN SEQRES 14 A 357 ILE VAL MET GLN HIS GLY ILE SER SER ASP PRO ASN SER SEQRES 15 A 357 THR ASN PHE CYS ALA ALA ARG LEU THR LYS ASP SER CYS SEQRES 16 A 357 GLN GLY ASP ALA GLY GLY PRO ILE VAL VAL LYS THR GLY SEQRES 17 A 357 ARG GLU GLN LEU GLY ILE VAL SER TRP GLY ASP GLU GLN SEQRES 18 A 357 CYS ALA LYS THR GLY THR TYR GLY VAL TYR THR ASN VAL SEQRES 19 A 357 SER TYR PHE ARG ASP TRP ILE THR LYS HIS THR ASN GLN SEQRES 20 A 357 LEU SER TYR ASP GLN VAL ALA ASN LEU GLY ILE ARG PRO SEQRES 21 A 357 LEU GLY LYS VAL SER GLN SER PHE THR TYR THR ASN LEU SEQRES 22 A 357 ASP ALA ASN ALA LEU THR TYR THR GLY ASN THR PHE SER SEQRES 23 A 357 SER LEU PRO ALA ASP PHE SER VAL LEU SER ASP GLY CYS SEQRES 24 A 357 SER THR LYS VAL THR LEU ALA THR GLY GLU SER CYS SER SEQRES 25 A 357 VAL GLU VAL ALA VAL ASP ALA GLN HIS TYR ARG GLN TYR SEQRES 26 A 357 GLN TYR ASP PHE GLU LEU ILE PHE SER TYR ALA GLY GLY SEQRES 27 A 357 SER LYS ARG ALA THR SER ARG ILE GLN LEU ASP THR SER SEQRES 28 A 357 GLU ASN LEU TYR PHE GLN FORMUL 2 HOH *93(H2 O) HELIX 1 1 ASN A 40 TRP A 44 5 5 HELIX 2 2 ASP A 56 GLY A 60 1 5 HELIX 3 3 ALA A 76 ASP A 81 5 6 HELIX 4 4 SER A 84 ALA A 86 5 3 HELIX 5 5 ALA A 146 LEU A 151 1 6 HELIX 6 6 SER A 186 GLN A 195 1 10 HELIX 7 7 PHE A 259 HIS A 266 1 8 HELIX 8 8 PHE A 307 LEU A 310 5 4 HELIX 9 9 GLY A 320 VAL A 325 1 6 SHEET 1 A 8 SER A 37 ASN A 38 0 SHEET 2 A 8 GLN A 178 LEU A 184 -1 O GLU A 179 N SER A 37 SHEET 3 A 8 ASN A 206 ARG A 211 -1 O ALA A 210 N ASP A 183 SHEET 4 A 8 GLY A 251 ASN A 255 -1 O TYR A 253 N PHE A 207 SHEET 5 A 8 GLN A 233 GLY A 240 -1 N TRP A 239 O VAL A 252 SHEET 6 A 8 PRO A 224 VAL A 227 -1 N ILE A 225 O GLY A 235 SHEET 7 A 8 PRO A 156 GLY A 161 -1 N THR A 158 O VAL A 226 SHEET 8 A 8 GLN A 178 LEU A 184 -1 O VAL A 182 N LEU A 157 SHEET 1 B 6 ILE A 47 LYS A 52 0 SHEET 2 B 6 GLN A 61 THR A 75 -1 O PHE A 62 N LEU A 50 SHEET 3 B 6 ALA A 127 SER A 135 -1 O LEU A 131 N ARG A 71 SHEET 4 B 6 GLU A 104 ARG A 113 -1 N ALA A 107 O ALA A 132 SHEET 5 B 6 VAL A 88 ILE A 92 -1 N VAL A 90 O ILE A 106 SHEET 6 B 6 ILE A 47 LYS A 52 -1 N VAL A 51 O ASP A 89 SHEET 1 C 4 LEU A 270 TYR A 272 0 SHEET 2 C 4 GLY A 284 ASN A 294 -1 O THR A 293 N SER A 271 SHEET 3 C 4 SER A 332 ALA A 341 -1 O CYS A 333 N TYR A 292 SHEET 4 C 4 PHE A 314 ASP A 319 -1 N SER A 318 O GLU A 336 SHEET 1 D 5 VAL A 275 ILE A 280 0 SHEET 2 D 5 GLY A 360 ASP A 371 1 O GLN A 369 N LEU A 278 SHEET 3 D 5 GLN A 346 TYR A 357 -1 N PHE A 355 O LYS A 362 SHEET 4 D 5 LEU A 300 ASN A 305 -1 N GLY A 304 O ILE A 354 SHEET 5 D 5 THR A 326 LEU A 327 -1 O LEU A 327 N LEU A 300 SSBOND 1 CYS A 63 CYS A 79 1555 1555 2.11 SSBOND 2 CYS A 190 CYS A 208 1555 1555 2.06 SSBOND 3 CYS A 321 CYS A 333 1555 1555 2.04 CRYST1 121.570 121.570 71.310 90.00 90.00 90.00 P 42 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.008226 0.000000 0.000000 0.00000 SCALE2 0.000000 0.008226 0.000000 0.00000 SCALE3 0.000000 0.000000 0.014023 0.00000