HEADER VIRAL PROTEIN 07-JUL-13 4LKJ TITLE THE STRUCTURE OF HEMAGGLUTININ L226Q MUTANT (H3 NUMBERING) FROM A TITLE 2 AVIAN-ORIGIN H7N9 INFLUENZA VIRUS (A/ANHUI/1/2013) IN COMPLEX WITH TITLE 3 AVIAN RECEPTOR ANALOG 3'SLNLN COMPND MOL_ID: 1; COMPND 2 MOLECULE: HEMAGGLUTININ; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: HEMAGGLUTININ; COMPND 7 CHAIN: B; COMPND 8 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: INFLUENZA A VIRUS; SOURCE 3 ORGANISM_TAXID: 11320; SOURCE 4 STRAIN: A/ANHUI/1/2013; SOURCE 5 EXPRESSION_SYSTEM: SPODOPTERA FRUGIPERDA; SOURCE 6 EXPRESSION_SYSTEM_COMMON: FALL ARMYWORM; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 7108; SOURCE 8 EXPRESSION_SYSTEM_CELL_LINE: HI5; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: BACULOVIRUS; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PFASTBAC1; SOURCE 11 MOL_ID: 2; SOURCE 12 ORGANISM_SCIENTIFIC: INFLUENZA A VIRUS; SOURCE 13 ORGANISM_TAXID: 11320; SOURCE 14 STRAIN: A/ANHUI/1/2013; SOURCE 15 EXPRESSION_SYSTEM: SPODOPTERA FRUGIPERDA; SOURCE 16 EXPRESSION_SYSTEM_COMMON: FALL ARMYWORM; SOURCE 17 EXPRESSION_SYSTEM_TAXID: 7108; SOURCE 18 EXPRESSION_SYSTEM_CELL_LINE: HI5; SOURCE 19 EXPRESSION_SYSTEM_VECTOR_TYPE: BACULOVIRUS; SOURCE 20 EXPRESSION_SYSTEM_PLASMID: PFASTBAC1 KEYWDS HOMOTRIMER, VIRUS ATTACHMENT, MEMBRANE FUSION, VIRAL PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR Y.SHI,W.ZHANG,F.WANG,J.QI,H.SONG,Y.WU,F.GAO,Y.ZHANG,Z.FAN,W.GONG, AUTHOR 2 D.WANG,Y.SHU,Y.WANG,J.YAN,G.F.GAO REVDAT 4 06-NOV-24 4LKJ 1 REMARK REVDAT 3 08-NOV-23 4LKJ 1 HETSYN REVDAT 2 29-JUL-20 4LKJ 1 COMPND REMARK HETNAM LINK REVDAT 2 2 1 SITE ATOM REVDAT 1 06-NOV-13 4LKJ 0 JRNL AUTH Y.SHI,W.ZHANG,F.WANG,J.QI,Y.WU,H.SONG,F.GAO,Y.BI,Y.ZHANG, JRNL AUTH 2 Z.FAN,C.QIN,H.SUN,J.LIU,J.HAYWOOD,W.LIU,W.GONG,D.WANG,Y.SHU, JRNL AUTH 3 Y.WANG,J.YAN,G.F.GAO JRNL TITL STRUCTURES AND RECEPTOR BINDING OF HEMAGGLUTININS FROM JRNL TITL 2 HUMAN-INFECTING H7N9 INFLUENZA VIRUSES JRNL REF SCIENCE V. 342 243 2013 JRNL REFN ISSN 0036-8075 JRNL PMID 24009358 JRNL DOI 10.1126/SCIENCE.1242917 REMARK 2 REMARK 2 RESOLUTION. 2.80 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE: 1.7.3_928) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.80 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 37.78 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.350 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.0 REMARK 3 NUMBER OF REFLECTIONS : 19491 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.239 REMARK 3 R VALUE (WORKING SET) : 0.237 REMARK 3 FREE R VALUE : 0.285 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.090 REMARK 3 FREE R VALUE TEST SET COUNT : 993 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 37.7844 - 5.3473 0.97 2727 130 0.2241 0.2418 REMARK 3 2 5.3473 - 4.2462 0.97 2624 142 0.1907 0.2517 REMARK 3 3 4.2462 - 3.7099 0.99 2618 151 0.2270 0.2648 REMARK 3 4 3.7099 - 3.3710 1.00 2645 139 0.2539 0.3175 REMARK 3 5 3.3710 - 3.1295 1.00 2647 133 0.2940 0.3586 REMARK 3 6 3.1295 - 2.9451 1.00 2611 168 0.3188 0.3905 REMARK 3 7 2.9451 - 2.7976 1.00 2626 130 0.3298 0.4060 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.10 REMARK 3 SHRINKAGE RADIUS : 0.86 REMARK 3 K_SOL : 0.25 REMARK 3 B_SOL : 37.67 REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.450 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 31.080 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 72.22 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 96.24 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 4.94790 REMARK 3 B22 (A**2) : 4.94790 REMARK 3 B33 (A**2) : -9.89590 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.005 3929 REMARK 3 ANGLE : 0.943 5306 REMARK 3 CHIRALITY : 0.201 585 REMARK 3 PLANARITY : 0.004 694 REMARK 3 DIHEDRAL : 18.039 1456 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 12 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN A AND (RESSEQ 3:122) REMARK 3 ORIGIN FOR THE GROUP (A): -52.1357 13.7409 -0.9750 REMARK 3 T TENSOR REMARK 3 T11: 0.5018 T22: 0.4368 REMARK 3 T33: 0.5939 T12: 0.0218 REMARK 3 T13: -0.0295 T23: -0.0066 REMARK 3 L TENSOR REMARK 3 L11: 0.7288 L22: 0.8548 REMARK 3 L33: 1.8928 L12: 0.2859 REMARK 3 L13: 0.1565 L23: 0.2948 REMARK 3 S TENSOR REMARK 3 S11: -0.0766 S12: 0.0124 S13: -0.0445 REMARK 3 S21: -0.0251 S22: 0.0644 S23: -0.1012 REMARK 3 S31: 0.0281 S32: 0.1320 S33: -0.0000 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN A AND (RESSEQ 123:175) REMARK 3 ORIGIN FOR THE GROUP (A): -59.9654 11.8511 -31.3283 REMARK 3 T TENSOR REMARK 3 T11: 0.8300 T22: 0.7154 REMARK 3 T33: 0.7197 T12: -0.0452 REMARK 3 T13: -0.0541 T23: 0.0392 REMARK 3 L TENSOR REMARK 3 L11: 1.5342 L22: 2.0225 REMARK 3 L33: 0.7385 L12: 1.6319 REMARK 3 L13: 0.1972 L23: -0.2279 REMARK 3 S TENSOR REMARK 3 S11: -0.4598 S12: 0.4568 S13: 0.0640 REMARK 3 S21: -0.9768 S22: 0.5225 S23: 0.4391 REMARK 3 S31: 0.5720 S32: 0.2218 S33: 0.0000 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN A AND (RESSEQ 176:204) REMARK 3 ORIGIN FOR THE GROUP (A): -59.6235 23.4512 -35.4241 REMARK 3 T TENSOR REMARK 3 T11: 0.9362 T22: 0.6259 REMARK 3 T33: 0.8508 T12: -0.1654 REMARK 3 T13: -0.1794 T23: 0.2105 REMARK 3 L TENSOR REMARK 3 L11: 0.2932 L22: 0.2931 REMARK 3 L33: 0.6860 L12: -0.0164 REMARK 3 L13: 0.3593 L23: -0.3035 REMARK 3 S TENSOR REMARK 3 S11: 0.0987 S12: 0.2452 S13: -0.1000 REMARK 3 S21: -0.6672 S22: 0.0380 S23: 0.4318 REMARK 3 S31: -0.4621 S32: -0.0047 S33: 0.0000 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN A AND (RESSEQ 205:259) REMARK 3 ORIGIN FOR THE GROUP (A): -59.4532 17.0728 -24.0078 REMARK 3 T TENSOR REMARK 3 T11: 0.6387 T22: 0.5446 REMARK 3 T33: 0.7722 T12: -0.0326 REMARK 3 T13: -0.0945 T23: 0.0908 REMARK 3 L TENSOR REMARK 3 L11: 1.8945 L22: 2.1422 REMARK 3 L33: 0.6807 L12: 1.5014 REMARK 3 L13: 0.5904 L23: 0.9267 REMARK 3 S TENSOR REMARK 3 S11: -0.2940 S12: 0.3955 S13: 0.3202 REMARK 3 S21: -0.5865 S22: 0.2112 S23: 0.5615 REMARK 3 S31: 0.0106 S32: 0.1509 S33: 0.0000 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN A AND (RESSEQ 260:299) REMARK 3 ORIGIN FOR THE GROUP (A): -49.8792 14.3731 8.1553 REMARK 3 T TENSOR REMARK 3 T11: 0.4990 T22: 0.4312 REMARK 3 T33: 0.5894 T12: -0.0300 REMARK 3 T13: 0.0270 T23: -0.0558 REMARK 3 L TENSOR REMARK 3 L11: 0.4478 L22: 0.6925 REMARK 3 L33: 0.5878 L12: -0.0646 REMARK 3 L13: -0.2118 L23: 0.6310 REMARK 3 S TENSOR REMARK 3 S11: 0.0971 S12: 0.0716 S13: -0.1815 REMARK 3 S21: 0.1890 S22: -0.2341 S23: -0.1906 REMARK 3 S31: -0.0006 S32: -0.1744 S33: -0.0000 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN A AND (RESSEQ 300:316) REMARK 3 ORIGIN FOR THE GROUP (A): -43.6013 24.4063 30.3713 REMARK 3 T TENSOR REMARK 3 T11: 0.5330 T22: 0.7071 REMARK 3 T33: 0.3954 T12: 0.1074 REMARK 3 T13: -0.0623 T23: -0.0813 REMARK 3 L TENSOR REMARK 3 L11: 0.3140 L22: 0.3488 REMARK 3 L33: 0.2428 L12: -0.3042 REMARK 3 L13: -0.0174 L23: 0.1890 REMARK 3 S TENSOR REMARK 3 S11: -0.2964 S12: -0.5703 S13: 0.1492 REMARK 3 S21: 0.0655 S22: 0.2098 S23: 0.0874 REMARK 3 S31: 0.0292 S32: -0.3896 S33: -0.0006 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN B AND (RESSEQ 323:352) REMARK 3 ORIGIN FOR THE GROUP (A): -45.7504 20.2108 52.1725 REMARK 3 T TENSOR REMARK 3 T11: 1.5935 T22: 1.5375 REMARK 3 T33: 0.8082 T12: -0.1332 REMARK 3 T13: -0.3477 T23: 0.2266 REMARK 3 L TENSOR REMARK 3 L11: 0.8629 L22: 0.1710 REMARK 3 L33: 0.4470 L12: 0.3325 REMARK 3 L13: -0.1746 L23: -0.2214 REMARK 3 S TENSOR REMARK 3 S11: 0.1496 S12: -0.8661 S13: -0.3104 REMARK 3 S21: 0.6714 S22: -0.3386 S23: -0.5403 REMARK 3 S31: 0.0250 S32: 0.9279 S33: 0.0045 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN B AND (RESSEQ 353:376) REMARK 3 ORIGIN FOR THE GROUP (A): -55.1761 15.9863 40.8064 REMARK 3 T TENSOR REMARK 3 T11: 1.1285 T22: 0.8744 REMARK 3 T33: 0.7087 T12: -0.0619 REMARK 3 T13: -0.0757 T23: 0.1951 REMARK 3 L TENSOR REMARK 3 L11: 0.8615 L22: 0.2317 REMARK 3 L33: 0.4409 L12: 0.3410 REMARK 3 L13: -0.6126 L23: -0.1986 REMARK 3 S TENSOR REMARK 3 S11: -0.3352 S12: -0.3336 S13: -0.2018 REMARK 3 S21: 0.0284 S22: -0.2089 S23: -0.1060 REMARK 3 S31: 1.2099 S32: -0.5081 S33: -0.0390 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN B AND (RESSEQ 377:395) REMARK 3 ORIGIN FOR THE GROUP (A): -54.6536 20.7270 1.0567 REMARK 3 T TENSOR REMARK 3 T11: 0.6487 T22: 0.5350 REMARK 3 T33: 0.5823 T12: 0.0155 REMARK 3 T13: 0.0706 T23: 0.0325 REMARK 3 L TENSOR REMARK 3 L11: 0.5226 L22: 1.5331 REMARK 3 L33: 0.3227 L12: -0.7760 REMARK 3 L13: -0.3735 L23: 0.3397 REMARK 3 S TENSOR REMARK 3 S11: -0.1642 S12: 0.4875 S13: -0.2618 REMARK 3 S21: -0.1327 S22: 0.0448 S23: -0.1201 REMARK 3 S31: -0.0730 S32: -0.5420 S33: -0.0042 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: CHAIN B AND (RESSEQ 396:446) REMARK 3 ORIGIN FOR THE GROUP (A): -53.6201 29.3882 26.4972 REMARK 3 T TENSOR REMARK 3 T11: 0.4641 T22: 0.3981 REMARK 3 T33: 0.4617 T12: -0.0131 REMARK 3 T13: -0.0678 T23: -0.0362 REMARK 3 L TENSOR REMARK 3 L11: 0.7707 L22: 0.4459 REMARK 3 L33: 0.8200 L12: -0.4598 REMARK 3 L13: 0.7672 L23: -0.4214 REMARK 3 S TENSOR REMARK 3 S11: -0.0566 S12: -0.1661 S13: 0.0926 REMARK 3 S21: 0.0374 S22: 0.0882 S23: -0.1538 REMARK 3 S31: 0.1810 S32: 0.0510 S33: 0.0000 REMARK 3 TLS GROUP : 11 REMARK 3 SELECTION: CHAIN B AND (RESSEQ 447:474) REMARK 3 ORIGIN FOR THE GROUP (A): -52.4644 20.7428 65.2972 REMARK 3 T TENSOR REMARK 3 T11: 1.8597 T22: 1.9738 REMARK 3 T33: 0.5810 T12: 0.1581 REMARK 3 T13: -0.1295 T23: 0.2381 REMARK 3 L TENSOR REMARK 3 L11: 0.7974 L22: 0.7112 REMARK 3 L33: 0.0493 L12: 0.4928 REMARK 3 L13: 0.0966 L23: -0.0739 REMARK 3 S TENSOR REMARK 3 S11: -0.2525 S12: -1.4956 S13: -0.1234 REMARK 3 S21: 1.7202 S22: 0.1994 S23: -0.1662 REMARK 3 S31: -0.7999 S32: 1.0683 S33: 0.0165 REMARK 3 TLS GROUP : 12 REMARK 3 SELECTION: CHAIN B AND (RESSEQ 475:490) REMARK 3 ORIGIN FOR THE GROUP (A): -59.7192 19.7562 70.7914 REMARK 3 T TENSOR REMARK 3 T11: 1.7149 T22: 1.8569 REMARK 3 T33: 1.0264 T12: 0.2989 REMARK 3 T13: -0.0201 T23: 0.2230 REMARK 3 L TENSOR REMARK 3 L11: 0.0511 L22: 0.1705 REMARK 3 L33: 0.0541 L12: 0.1036 REMARK 3 L13: 0.0520 L23: 0.1089 REMARK 3 S TENSOR REMARK 3 S11: -1.3905 S12: 0.0075 S13: 0.7658 REMARK 3 S21: 0.3620 S22: 0.7920 S23: 1.3889 REMARK 3 S31: 0.6326 S32: 0.2236 S33: -0.0062 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4LKJ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 30-JUL-13. REMARK 100 THE DEPOSITION ID IS D_1000080744. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 28-JUN-13 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRF REMARK 200 BEAMLINE : BL17U REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0000 REMARK 200 MONOCHROMATOR : GRAPHITE REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 19499 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.798 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.0 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.80 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.90 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 4DJ6 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 66.22 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.64 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 16%(W/V) POLYETHYLENE GLYCOL 3350, REMARK 280 0.2M LITHIUM SULFATE, 0.1M TRIS, PH 8.5, VAPOR DIFFUSION, REMARK 280 SITTING DROP, TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: H 3 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z REMARK 290 3555 -X+Y,-X,Z REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z REMARK 290 6555 -X,-X+Y,-Z REMARK 290 7555 X+2/3,Y+1/3,Z+1/3 REMARK 290 8555 -Y+2/3,X-Y+1/3,Z+1/3 REMARK 290 9555 -X+Y+2/3,-X+1/3,Z+1/3 REMARK 290 10555 Y+2/3,X+1/3,-Z+1/3 REMARK 290 11555 X-Y+2/3,-Y+1/3,-Z+1/3 REMARK 290 12555 -X+2/3,-X+Y+1/3,-Z+1/3 REMARK 290 13555 X+1/3,Y+2/3,Z+2/3 REMARK 290 14555 -Y+1/3,X-Y+2/3,Z+2/3 REMARK 290 15555 -X+Y+1/3,-X+2/3,Z+2/3 REMARK 290 16555 Y+1/3,X+2/3,-Z+2/3 REMARK 290 17555 X-Y+1/3,-Y+2/3,-Z+2/3 REMARK 290 18555 -X+1/3,-X+Y+2/3,-Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 7 1.000000 0.000000 0.000000 58.45450 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 33.74872 REMARK 290 SMTRY3 7 0.000000 0.000000 1.000000 99.02533 REMARK 290 SMTRY1 8 -0.500000 -0.866025 0.000000 58.45450 REMARK 290 SMTRY2 8 0.866025 -0.500000 0.000000 33.74872 REMARK 290 SMTRY3 8 0.000000 0.000000 1.000000 99.02533 REMARK 290 SMTRY1 9 -0.500000 0.866025 0.000000 58.45450 REMARK 290 SMTRY2 9 -0.866025 -0.500000 0.000000 33.74872 REMARK 290 SMTRY3 9 0.000000 0.000000 1.000000 99.02533 REMARK 290 SMTRY1 10 -0.500000 0.866025 0.000000 58.45450 REMARK 290 SMTRY2 10 0.866025 0.500000 0.000000 33.74872 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 99.02533 REMARK 290 SMTRY1 11 1.000000 0.000000 0.000000 58.45450 REMARK 290 SMTRY2 11 0.000000 -1.000000 0.000000 33.74872 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 99.02533 REMARK 290 SMTRY1 12 -0.500000 -0.866025 0.000000 58.45450 REMARK 290 SMTRY2 12 -0.866025 0.500000 0.000000 33.74872 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 99.02533 REMARK 290 SMTRY1 13 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 13 0.000000 1.000000 0.000000 67.49744 REMARK 290 SMTRY3 13 0.000000 0.000000 1.000000 198.05067 REMARK 290 SMTRY1 14 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 14 0.866025 -0.500000 0.000000 67.49744 REMARK 290 SMTRY3 14 0.000000 0.000000 1.000000 198.05067 REMARK 290 SMTRY1 15 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 15 -0.866025 -0.500000 0.000000 67.49744 REMARK 290 SMTRY3 15 0.000000 0.000000 1.000000 198.05067 REMARK 290 SMTRY1 16 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 16 0.866025 0.500000 0.000000 67.49744 REMARK 290 SMTRY3 16 0.000000 0.000000 -1.000000 198.05067 REMARK 290 SMTRY1 17 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 17 0.000000 -1.000000 0.000000 67.49744 REMARK 290 SMTRY3 17 0.000000 0.000000 -1.000000 198.05067 REMARK 290 SMTRY1 18 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 18 -0.866025 0.500000 0.000000 67.49744 REMARK 290 SMTRY3 18 0.000000 0.000000 -1.000000 198.05067 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: HEXAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: HEXAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 36630 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 57870 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -112.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -0.500000 -0.866025 0.000000 -58.45450 REMARK 350 BIOMT2 2 0.866025 -0.500000 0.000000 101.24616 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 3 -0.500000 0.866025 0.000000 -116.90900 REMARK 350 BIOMT2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 350 BIOMT3 3 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH B 603 LIES ON A SPECIAL POSITION. REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 ND2 ASN A 28 C2 NAG A 601 1.89 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PRO A 39 41.53 -79.97 REMARK 500 GLU A 71 41.33 -142.63 REMARK 500 CYS A 87 -67.18 -105.12 REMARK 500 THR A 122 -15.21 -144.39 REMARK 500 ARG A 131 -99.78 -136.65 REMARK 500 SER A 135 -157.43 -132.58 REMARK 500 ASN A 149 -137.41 -161.88 REMARK 500 ALA A 150 177.48 75.27 REMARK 500 GLN A 154 91.65 -65.64 REMARK 500 SER A 198 40.58 -92.43 REMARK 500 ASN A 199 -34.72 -173.76 REMARK 500 GLN A 201 103.78 -166.54 REMARK 500 SER A 207 73.30 -153.42 REMARK 500 ASN A 231 -6.99 70.47 REMARK 500 ASN A 239 10.66 -144.01 REMARK 500 ASP A 271 -19.23 -150.59 REMARK 500 ALA B 326 -76.85 -147.21 REMARK 500 GLN B 348 86.58 -157.54 REMARK 500 ASN B 349 -142.57 -102.93 REMARK 500 GLN B 351 25.42 -74.58 REMARK 500 ALA B 356 -156.58 -122.76 REMARK 500 ARG B 448 -133.08 51.12 REMARK 500 SER B 481 -42.31 -153.28 REMARK 500 LYS B 482 45.83 -75.84 REMARK 500 TYR B 483 10.93 -173.96 REMARK 500 REMARK 500 REMARK: NULL REMARK 630 REMARK 630 MOLECULE TYPE: OLIGOSACCHARIDE SUBSTRATE ANALOG REMARK 630 MOLECULE NAME: 2-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE REMARK 630 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 630 SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 630 REMARK 630 M RES C SSSEQI REMARK 630 NAG A 601 REMARK 630 NAG A 602 REMARK 630 NAG B 501 REMARK 630 SOURCE: NULL REMARK 630 TAXONOMY: NULL REMARK 630 SUBCOMP: NULL REMARK 630 DETAILS: OLIGOSACCHARIDE REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4LKG RELATED DB: PDB REMARK 900 RELATED ID: 4LKH RELATED DB: PDB REMARK 900 RELATED ID: 4LKI RELATED DB: PDB REMARK 900 RELATED ID: 4LKK RELATED DB: PDB REMARK 999 REMARK 999 SEQUENCE REMARK 999 THE SEQUENCE DATABASE REFERENCES FOR THIS PROTEIN WHICH DERIVED REMARK 999 FROM STRAIN A/ANHUI/1/2013 DOES NOT CURRENTLY EXIST. DBREF 4LKJ A 3 316 PDB 4LKJ 4LKJ 3 316 DBREF 4LKJ B 323 490 PDB 4LKJ 4LKJ 323 490 SEQRES 1 A 314 ILE CYS LEU GLY HIS HIS ALA VAL SER ASN GLY THR LYS SEQRES 2 A 314 VAL ASN THR LEU THR GLU ARG GLY VAL GLU VAL VAL ASN SEQRES 3 A 314 ALA THR GLU THR VAL GLU ARG THR ASN ILE PRO ARG ILE SEQRES 4 A 314 CYS SER LYS GLY LYS ARG THR VAL ASP LEU GLY GLN CYS SEQRES 5 A 314 GLY LEU LEU GLY THR ILE THR GLY PRO PRO GLN CYS ASP SEQRES 6 A 314 GLN PHE LEU GLU PHE SER ALA ASP LEU ILE ILE GLU ARG SEQRES 7 A 314 ARG GLU GLY SER ASP VAL CYS TYR PRO GLY LYS PHE VAL SEQRES 8 A 314 ASN GLU GLU ALA LEU ARG GLN ILE LEU ARG GLU SER GLY SEQRES 9 A 314 GLY ILE ASP LYS GLU ALA MET GLY PHE THR TYR SER GLY SEQRES 10 A 314 ILE ARG THR ASN GLY ALA THR SER ALA CYS ARG ARG SER SEQRES 11 A 314 GLY SER SER PHE TYR ALA GLU MET LYS TRP LEU LEU SER SEQRES 12 A 314 ASN THR ASP ASN ALA ALA PHE PRO GLN MET THR LYS SER SEQRES 13 A 314 TYR LYS ASN THR ARG LYS SER PRO ALA LEU ILE VAL TRP SEQRES 14 A 314 GLY ILE HIS HIS SER VAL SER THR ALA GLU GLN THR LYS SEQRES 15 A 314 LEU TYR GLY SER GLY ASN LYS LEU VAL THR VAL GLY SER SEQRES 16 A 314 SER ASN TYR GLN GLN SER PHE VAL PRO SER PRO GLY ALA SEQRES 17 A 314 ARG PRO GLN VAL ASN GLY GLN SER GLY ARG ILE ASP PHE SEQRES 18 A 314 HIS TRP LEU MET LEU ASN PRO ASN ASP THR VAL THR PHE SEQRES 19 A 314 SER PHE ASN GLY ALA PHE ILE ALA PRO ASP ARG ALA SER SEQRES 20 A 314 PHE LEU ARG GLY LYS SER MET GLY ILE GLN SER GLY VAL SEQRES 21 A 314 GLN VAL ASP ALA ASN CYS GLU GLY ASP CYS TYR HIS SER SEQRES 22 A 314 GLY GLY THR ILE ILE SER ASN LEU PRO PHE GLN ASN ILE SEQRES 23 A 314 ASP SER ARG ALA VAL GLY LYS CYS PRO ARG TYR VAL LYS SEQRES 24 A 314 GLN ARG SER LEU LEU LEU ALA THR GLY MET LYS ASN VAL SEQRES 25 A 314 PRO GLU SEQRES 1 B 168 LEU PHE GLY ALA ILE ALA GLY PHE ILE GLU ASN GLY TRP SEQRES 2 B 168 GLU GLY LEU ILE ASP GLY TRP TYR GLY PHE ARG HIS GLN SEQRES 3 B 168 ASN ALA GLN GLY GLU GLY THR ALA ALA ASP TYR LYS SER SEQRES 4 B 168 THR GLN SER ALA ILE ASP GLN ILE THR GLY LYS LEU ASN SEQRES 5 B 168 ARG LEU ILE GLU LYS THR ASN GLN GLN PHE GLU LEU ILE SEQRES 6 B 168 ASP ASN GLU PHE ASN GLU VAL GLU LYS GLN ILE GLY ASN SEQRES 7 B 168 VAL ILE ASN TRP THR ARG ASP SER ILE THR GLU VAL TRP SEQRES 8 B 168 SER TYR ASN ALA GLU LEU LEU VAL ALA MET GLU ASN GLN SEQRES 9 B 168 HIS THR ILE ASP LEU ALA ASP SER GLU MET ASP LYS LEU SEQRES 10 B 168 TYR GLU ARG VAL LYS ARG GLN LEU ARG GLU ASN ALA GLU SEQRES 11 B 168 GLU ASP GLY THR GLY CYS PHE GLU ILE PHE HIS LYS CYS SEQRES 12 B 168 ASP ASP ASP CYS MET ALA SER ILE ARG ASN ASN THR TYR SEQRES 13 B 168 ASP HIS SER LYS TYR ARG GLU GLU ALA MET GLN ASN MODRES 4LKJ ASN B 403 ASN GLYCOSYLATION SITE MODRES 4LKJ ASN A 231 ASN GLYCOSYLATION SITE MODRES 4LKJ ASN A 28 ASN GLYCOSYLATION SITE HET NAG C 1 15 HET GAL C 2 11 HET SIA C 3 20 HET NAG A 601 14 HET NAG A 602 14 HET NAG B 501 14 HETNAM NAG 2-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE HETNAM GAL BETA-D-GALACTOPYRANOSE HETNAM SIA N-ACETYL-ALPHA-NEURAMINIC ACID HETSYN NAG N-ACETYL-BETA-D-GLUCOSAMINE; 2-ACETAMIDO-2-DEOXY-BETA- HETSYN 2 NAG D-GLUCOSE; 2-ACETAMIDO-2-DEOXY-D-GLUCOSE; 2-ACETAMIDO- HETSYN 3 NAG 2-DEOXY-GLUCOSE; N-ACETYL-D-GLUCOSAMINE HETSYN GAL BETA-D-GALACTOSE; D-GALACTOSE; GALACTOSE HETSYN SIA N-ACETYLNEURAMINIC ACID; SIALIC ACID; ALPHA-SIALIC HETSYN 2 SIA ACID; O-SIALIC ACID FORMUL 3 NAG 4(C8 H15 N O6) FORMUL 3 GAL C6 H12 O6 FORMUL 3 SIA C11 H19 N O9 FORMUL 7 HOH *32(H2 O) HELIX 1 1 LEU A 57 GLY A 62 1 6 HELIX 2 2 PRO A 63 ASP A 67 5 5 HELIX 3 3 ASN A 94 GLU A 104 1 11 HELIX 4 4 SER A 178 GLY A 187 1 10 HELIX 5 5 ASP B 358 ILE B 377 1 20 HELIX 6 6 GLU B 395 LEU B 447 1 53 HELIX 7 7 ASP B 466 ASN B 475 1 10 HELIX 8 8 TYR B 483 ASN B 490 1 8 SHEET 1 A 2 CYS A 4 HIS A 7 0 SHEET 2 A 2 TYR B 343 ARG B 346 -1 O ARG B 346 N CYS A 4 SHEET 1 B 2 THR A 14 ASN A 17 0 SHEET 2 B 2 ARG A 22 VAL A 26 -1 O VAL A 24 N VAL A 16 SHEET 1 C 2 ALA A 29 GLU A 31 0 SHEET 2 C 2 LEU A 306 ALA A 308 -1 O LEU A 307 N THR A 30 SHEET 1 D 3 VAL A 33 GLU A 34 0 SHEET 2 D 3 PHE A 285 GLN A 286 1 O PHE A 285 N GLU A 34 SHEET 3 D 3 ARG A 298 TYR A 299 1 O ARG A 298 N GLN A 286 SHEET 1 E 2 ILE A 41 CYS A 42 0 SHEET 2 E 2 VAL A 264 ASP A 265 1 O ASP A 265 N ILE A 41 SHEET 1 F 3 THR A 48 ASP A 50 0 SHEET 2 F 3 LEU A 76 GLU A 79 1 O ILE A 78 N VAL A 49 SHEET 3 F 3 MET A 256 GLN A 259 1 O ILE A 258 N ILE A 77 SHEET 1 G 5 GLY A 90 PHE A 92 0 SHEET 2 G 5 ARG A 220 LEU A 228 1 O PHE A 223 N LYS A 91 SHEET 3 G 5 ALA A 167 HIS A 175 -1 N HIS A 175 O ARG A 220 SHEET 4 G 5 PHE A 242 PRO A 245 -1 O ILE A 243 N GLY A 172 SHEET 5 G 5 MET A 140 TRP A 142 -1 N LYS A 141 O ALA A 244 SHEET 1 H 2 ILE A 108 ALA A 112 0 SHEET 2 H 2 ARG A 247 LEU A 251 -1 O ALA A 248 N GLU A 111 SHEET 1 I 2 THR A 126 ARG A 130 0 SHEET 2 I 2 SER A 134 SER A 135 -1 O SER A 135 N CYS A 129 SHEET 1 J 4 MET A 155 LYS A 160 0 SHEET 2 J 4 THR A 233 PHE A 238 -1 O PHE A 236 N LYS A 157 SHEET 3 J 4 VAL A 193 GLY A 196 -1 N THR A 194 O SER A 237 SHEET 4 J 4 GLN A 201 PHE A 204 -1 O PHE A 204 N VAL A 193 SHEET 1 K 3 GLY A 277 THR A 278 0 SHEET 2 K 3 CYS A 272 HIS A 274 -1 N HIS A 274 O GLY A 277 SHEET 3 K 3 VAL A 293 GLY A 294 -1 O VAL A 293 N TYR A 273 SHEET 1 L 2 ALA B 451 GLU B 453 0 SHEET 2 L 2 PHE B 459 ILE B 461 -1 O GLU B 460 N GLU B 452 SSBOND 1 CYS A 4 CYS B 458 1555 1555 2.03 SSBOND 2 CYS A 42 CYS A 268 1555 1555 2.03 SSBOND 3 CYS A 54 CYS A 66 1555 1555 2.04 SSBOND 4 CYS A 87 CYS A 129 1555 1555 2.03 SSBOND 5 CYS A 272 CYS A 296 1555 1555 2.03 SSBOND 6 CYS B 465 CYS B 469 1555 1555 2.03 LINK ND2 ASN A 28 C1 NAG A 601 1555 1555 1.44 LINK ND2 ASN A 231 C1 NAG A 602 1555 1555 1.44 LINK ND2 ASN B 403 C1 NAG B 501 1555 1555 1.44 LINK O4 NAG C 1 C1 GAL C 2 1555 1555 1.43 LINK O3 GAL C 2 C2 SIA C 3 1555 1555 1.44 CRYST1 116.909 116.909 297.076 90.00 90.00 120.00 H 3 2 18 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.008554 0.004938 0.000000 0.00000 SCALE2 0.000000 0.009877 0.000000 0.00000 SCALE3 0.000000 0.000000 0.003366 0.00000