HEADER TRANSFERASE 11-JUL-13 4LNG TITLE ASPERGILLUS FUMIGATUS PROTEIN FARNESYLTRANSFERASE COMPLEX WITH TITLE 2 FARNESYLDIPHOSPHATE AND TIPIFARNIB COMPND MOL_ID: 1; COMPND 2 MOLECULE: CAAX FARNESYLTRANSFERASE ALPHA SUBUNIT RAM2; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: ASPERGILLUS FUMIGATUS PROTEIN FARNESYLTRANSFERASE ALPHA COMPND 5 SUBUNIT; COMPND 6 EC: 2.5.1.-; COMPND 7 ENGINEERED: YES; COMPND 8 MUTATION: YES; COMPND 9 MOL_ID: 2; COMPND 10 MOLECULE: CAAX FARNESYLTRANSFERASE BETA SUBUNIT RAM1; COMPND 11 CHAIN: B; COMPND 12 FRAGMENT: ASPERGILLUS FUMIGATUS PROTEIN FARNESYLTRANSFERASE BETA COMPND 13 SUBUNIT; COMPND 14 EC: 2.5.1.58; COMPND 15 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ASPERGILLUS FUMIGATUS; SOURCE 3 ORGANISM_TAXID: 330879; SOURCE 4 STRAIN: ATCC MYA-4609 / AF293 / CBS 101355 / FGSC A1100; SOURCE 5 GENE: AFUA_4G07800, NCBI LOCUS XM_746952 RAM2 GENE; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: C41; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PCDFDUET 1; SOURCE 11 MOL_ID: 2; SOURCE 12 ORGANISM_SCIENTIFIC: ASPERGILLUS FUMIGATUS; SOURCE 13 ORGANISM_TAXID: 330879; SOURCE 14 STRAIN: ATCC MYA-4609 / AF293 / CBS 101355 / FGSC A1100; SOURCE 15 GENE: AFUA_4G10330, NCBI LOCUS XM_746700 RAM1 GENE; SOURCE 16 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 17 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 18 EXPRESSION_SYSTEM_STRAIN: C41; SOURCE 19 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 20 EXPRESSION_SYSTEM_PLASMID: PCDF DUET1 KEYWDS FARNESYLTRANSFERASE, PRENYLATION, ISOPRENOID AND CAAX-CONTAINING KEYWDS 2 PROTEIN AND PEPTIDE SUBSTRATES, FARNESYLATION, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR M.F.MABANGLO,M.A.HAST,L.S.BEESE REVDAT 3 28-FEB-24 4LNG 1 REMARK SEQADV LINK REVDAT 2 26-MAR-14 4LNG 1 JRNL REVDAT 1 01-JAN-14 4LNG 0 JRNL AUTH M.F.MABANGLO,M.A.HAST,N.B.LUBOCK,H.W.HELLINGA,L.S.BEESE JRNL TITL CRYSTAL STRUCTURES OF THE FUNGAL PATHOGEN ASPERGILLUS JRNL TITL 2 FUMIGATUS PROTEIN FARNESYLTRANSFERASE COMPLEXED WITH JRNL TITL 3 SUBSTRATES AND INHIBITORS REVEAL FEATURES FOR ANTIFUNGAL JRNL TITL 4 DRUG DESIGN. JRNL REF PROTEIN SCI. V. 23 289 2014 JRNL REFN ISSN 0961-8368 JRNL PMID 24347326 JRNL DOI 10.1002/PRO.2411 REMARK 2 REMARK 2 RESOLUTION. 1.91 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE: 1.8_1069) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.91 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 30.24 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 96.3 REMARK 3 NUMBER OF REFLECTIONS : 66203 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.156 REMARK 3 R VALUE (WORKING SET) : 0.155 REMARK 3 FREE R VALUE : 0.185 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.890 REMARK 3 FREE R VALUE TEST SET COUNT : 3239 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 30.2407 - 5.4087 1.00 2930 138 0.1619 0.1870 REMARK 3 2 5.4087 - 4.2970 1.00 2892 132 0.1413 0.1399 REMARK 3 3 4.2970 - 3.7550 1.00 2837 145 0.1288 0.1443 REMARK 3 4 3.7550 - 3.4122 1.00 2882 145 0.1399 0.1785 REMARK 3 5 3.4122 - 3.1679 1.00 2809 161 0.1479 0.1630 REMARK 3 6 3.1679 - 2.9813 1.00 2885 135 0.1510 0.1891 REMARK 3 7 2.9813 - 2.8321 1.00 2826 141 0.1593 0.1802 REMARK 3 8 2.8321 - 2.7089 1.00 2835 142 0.1526 0.2011 REMARK 3 9 2.7089 - 2.6047 1.00 2868 126 0.1534 0.2183 REMARK 3 10 2.6047 - 2.5148 1.00 2820 148 0.1569 0.1753 REMARK 3 11 2.5148 - 2.4362 1.00 2831 135 0.1460 0.1813 REMARK 3 12 2.4362 - 2.3666 1.00 2856 126 0.1517 0.2170 REMARK 3 13 2.3666 - 2.3044 1.00 2810 165 0.1524 0.1814 REMARK 3 14 2.3044 - 2.2482 1.00 2808 163 0.1582 0.2084 REMARK 3 15 2.2482 - 2.1971 1.00 2838 138 0.1584 0.1969 REMARK 3 16 2.1971 - 2.1503 0.99 2843 148 0.1617 0.1802 REMARK 3 17 2.1503 - 2.1073 0.99 2729 158 0.1704 0.2027 REMARK 3 18 2.1073 - 2.0676 0.97 2750 149 0.1758 0.2222 REMARK 3 19 2.0676 - 2.0306 0.95 2701 139 0.1888 0.2114 REMARK 3 20 2.0306 - 1.9962 0.92 2560 156 0.1883 0.2507 REMARK 3 21 1.9962 - 1.9640 0.89 2509 126 0.1994 0.2320 REMARK 3 22 1.9640 - 1.9338 0.85 2379 138 0.2106 0.2300 REMARK 3 23 1.9338 - 1.9054 0.62 1766 85 0.2210 0.2470 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.170 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 17.540 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.003 6643 REMARK 3 ANGLE : 0.793 9067 REMARK 3 CHIRALITY : 0.061 947 REMARK 3 PLANARITY : 0.003 1188 REMARK 3 DIHEDRAL : 11.893 2457 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: ALL REMARK 3 ORIGIN FOR THE GROUP (A): 25.1798 -9.6615 9.2197 REMARK 3 T TENSOR REMARK 3 T11: 0.1018 T22: 0.0913 REMARK 3 T33: 0.1083 T12: 0.0063 REMARK 3 T13: -0.0158 T23: 0.0062 REMARK 3 L TENSOR REMARK 3 L11: 0.6936 L22: 0.6619 REMARK 3 L33: 0.5331 L12: 0.0318 REMARK 3 L13: -0.0545 L23: 0.1022 REMARK 3 S TENSOR REMARK 3 S11: -0.0051 S12: -0.0146 S13: 0.0040 REMARK 3 S21: -0.0331 S22: -0.0103 S23: 0.0321 REMARK 3 S31: 0.0300 S32: -0.0245 S33: 0.0078 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4LNG COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 12-JUL-13. REMARK 100 THE DEPOSITION ID IS D_1000080849. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 17-NOV-12 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 22-BM REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 225 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 66308 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.900 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.3 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 45.49 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.26 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 4-10% PEG6000, 600-800 MM LICL, 100 MM REMARK 280 HEPES , PH 7.5, VAPOR DIFFUSION, HANGING DROP REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 45.32900 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 8960 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 29360 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -87.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -13 REMARK 465 GLY A -12 REMARK 465 SER A -11 REMARK 465 SER A -10 REMARK 465 HIS A -9 REMARK 465 HIS A -8 REMARK 465 HIS A -7 REMARK 465 HIS A -6 REMARK 465 HIS A -5 REMARK 465 HIS A -4 REMARK 465 SER A -3 REMARK 465 GLN A -2 REMARK 465 ASP A -1 REMARK 465 PRO A 0 REMARK 465 MET A 1 REMARK 465 GLU A 2 REMARK 465 VAL A 274 REMARK 465 GLU A 275 REMARK 465 LYS A 276 REMARK 465 GLN A 277 REMARK 465 GLU A 278 REMARK 465 ASN A 279 REMARK 465 GLY A 280 REMARK 465 GLN A 281 REMARK 465 VAL A 282 REMARK 465 VAL A 283 REMARK 465 ASP A 284 REMARK 465 VAL A 285 REMARK 465 SER A 350 REMARK 465 ALA A 351 REMARK 465 SER A 352 REMARK 465 ALA A 353 REMARK 465 MET B 1 REMARK 465 PRO B 2 REMARK 465 VAL B 3 REMARK 465 ILE B 4 REMARK 465 ALA B 5 REMARK 465 ALA B 6 REMARK 465 THR B 7 REMARK 465 GLY B 8 REMARK 465 LYS B 9 REMARK 465 HIS B 10 REMARK 465 ARG B 11 REMARK 465 ARG B 12 REMARK 465 LYS B 13 REMARK 465 VAL B 14 REMARK 465 LEU B 15 REMARK 465 PHE B 16 REMARK 465 SER B 17 REMARK 465 SER B 18 REMARK 465 THR B 19 REMARK 465 SER B 20 REMARK 465 GLN B 21 REMARK 465 GLY B 22 REMARK 465 LEU B 23 REMARK 465 SER B 24 REMARK 465 VAL B 25 REMARK 465 THR B 26 REMARK 465 ALA B 27 REMARK 465 GLY B 28 REMARK 465 LYS B 29 REMARK 465 PRO B 30 REMARK 465 LYS B 31 REMARK 465 GLY B 32 REMARK 465 ARG B 33 REMARK 465 LYS B 34 REMARK 465 PHE B 35 REMARK 465 SER B 36 REMARK 465 ALA B 37 REMARK 465 ASN B 38 REMARK 465 LEU B 39 REMARK 465 GLN B 40 REMARK 465 VAL B 41 REMARK 465 ASN B 42 REMARK 465 SER B 43 REMARK 465 ARG B 44 REMARK 465 SER B 45 REMARK 465 PRO B 46 REMARK 465 ALA B 47 REMARK 465 VAL B 48 REMARK 465 THR B 49 REMARK 465 SER B 50 REMARK 465 SER B 51 REMARK 465 HIS B 52 REMARK 465 ASN B 53 REMARK 465 HIS B 54 REMARK 465 SER B 55 REMARK 465 SER B 56 REMARK 465 SER B 57 REMARK 465 SER B 58 REMARK 465 GLN B 59 REMARK 465 SER B 60 REMARK 465 GLY B 61 REMARK 465 LYS B 62 REMARK 465 MET B 63 REMARK 465 GLY B 64 REMARK 465 GLU B 65 REMARK 465 SER B 66 REMARK 465 GLN B 67 REMARK 465 VAL B 68 REMARK 465 ALA B 390 REMARK 465 GLY B 391 REMARK 465 PRO B 392 REMARK 465 LYS B 393 REMARK 465 ARG B 394 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 70 88.01 -152.00 REMARK 500 SER A 146 108.91 -50.61 REMARK 500 SER A 146 108.31 -49.73 REMARK 500 ALA A 241 85.08 -166.53 REMARK 500 LYS A 323 -54.75 -129.68 REMARK 500 ASP A 325 60.21 -153.07 REMARK 500 GLU B 138 -154.38 -98.55 REMARK 500 LYS B 362 -169.94 -112.15 REMARK 500 LYS B 458 -154.83 -113.52 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 K B 607 K REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH A 740 O REMARK 620 2 EDO B 605 O2 68.8 REMARK 620 N 1 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B 601 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP B 365 OD2 REMARK 620 2 ASP B 365 OD1 55.1 REMARK 620 3 CYS B 367 SG 107.3 90.5 REMARK 620 4 HIS B 433 NE2 119.5 90.2 122.4 REMARK 620 5 JAN B 602 N2 95.6 150.5 102.3 104.5 REMARK 620 N 1 2 3 4 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN B 601 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE JAN B 602 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FPP B 603 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO B 604 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO B 605 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO B 606 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE K B 607 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4L9P RELATED DB: PDB REMARK 900 RELATED ID: 4LNB RELATED DB: PDB DBREF 4LNG A 1 353 UNP Q4WP27 Q4WP27_ASPFU 1 353 DBREF 4LNG B 1 519 UNP Q4WPS9 Q4WPS9_ASPFU 1 519 SEQADV 4LNG MET A -13 UNP Q4WP27 INITIATING METHIONINE SEQADV 4LNG GLY A -12 UNP Q4WP27 EXPRESSION TAG SEQADV 4LNG SER A -11 UNP Q4WP27 EXPRESSION TAG SEQADV 4LNG SER A -10 UNP Q4WP27 EXPRESSION TAG SEQADV 4LNG HIS A -9 UNP Q4WP27 EXPRESSION TAG SEQADV 4LNG HIS A -8 UNP Q4WP27 EXPRESSION TAG SEQADV 4LNG HIS A -7 UNP Q4WP27 EXPRESSION TAG SEQADV 4LNG HIS A -6 UNP Q4WP27 EXPRESSION TAG SEQADV 4LNG HIS A -5 UNP Q4WP27 EXPRESSION TAG SEQADV 4LNG HIS A -4 UNP Q4WP27 EXPRESSION TAG SEQADV 4LNG SER A -3 UNP Q4WP27 EXPRESSION TAG SEQADV 4LNG GLN A -2 UNP Q4WP27 EXPRESSION TAG SEQADV 4LNG ASP A -1 UNP Q4WP27 EXPRESSION TAG SEQADV 4LNG PRO A 0 UNP Q4WP27 EXPRESSION TAG SEQADV 4LNG SER A 146 UNP Q4WP27 ASN 146 ENGINEERED MUTATION SEQRES 1 A 367 MET GLY SER SER HIS HIS HIS HIS HIS HIS SER GLN ASP SEQRES 2 A 367 PRO MET GLU GLY LYS TYR SER SER ASP PRO GLU TRP ALA SEQRES 3 A 367 SER ILE LYS PRO ILE GLU LEU ASN ASP GLY SER ASP PHE SEQRES 4 A 367 GLY ALA MET PRO LEU ALA THR ILE SER TYR SER PRO GLU SEQRES 5 A 367 TYR LEU GLU ALA THR SER TYR LEU ARG ALA VAL MET ALA SEQRES 6 A 367 ALA ASN GLU MET SER GLU ARG ALA LEU ARG LEU THR GLY SEQRES 7 A 367 ASP ILE ILE SER MET ASN PRO ALA HIS TYR THR VAL TRP SEQRES 8 A 367 ILE TYR ARG ALA LYS ILE LEU PHE ALA LEU GLY LYS ASP SEQRES 9 A 367 LEU ASN GLU GLU ILE GLU TRP LEU ASN LYS VAL ALA LEU SEQRES 10 A 367 LYS HIS LEU LYS ASN TYR GLN ILE TRP HIS HIS ARG GLN SEQRES 11 A 367 VAL LEU MET SER SER ARG ALA HIS PHE PRO THR LEU PRO SEQRES 12 A 367 PRO ARG GLU GLN ASP PHE LEU MET GLU MET PHE ALA GLN SEQRES 13 A 367 ASP ALA LYS SER TYR HIS VAL TRP THR TYR ARG HIS TRP SEQRES 14 A 367 LEU VAL ARG HIS PHE LYS LEU TRP ASP HIS PRO ARG GLU SEQRES 15 A 367 ILE GLN ASP VAL GLU ALA LEU LEU LYS ALA ASP VAL ARG SEQRES 16 A 367 ASN ASN SER ALA TRP ASN HIS ARG TYR MET LEU ARG PHE SEQRES 17 A 367 GLY PRO ARG ASP GLU ASN GLU PHE ASP ALA GLY LEU HIS SEQRES 18 A 367 ASN THR THR GLY PRO SER SER GLU LYS GLY ARG LEU PRO SEQRES 19 A 367 VAL VAL ASP GLU ASP LEU VAL ASP SER GLU LEU GLN TYR SEQRES 20 A 367 SER GLN SER ARG ILE LEU GLU ALA PRO GLU ASN ARG SER SEQRES 21 A 367 PRO TRP SER TYR ALA ARG GLY VAL LEU GLN ALA ALA GLY SEQRES 22 A 367 ARG PRO LEU SER GLU TRP LYS ASP PHE ALA ARG SER PHE SEQRES 23 A 367 VAL VAL GLU LYS GLN GLU ASN GLY GLN VAL VAL ASP VAL SEQRES 24 A 367 ALA VAL LYS SER SER HIS ALA ILE GLU TRP LEU ALA ASP SEQRES 25 A 367 VAL TYR ALA GLU GLU ASP GLY SER GLU GLY SER ALA ALA SEQRES 26 A 367 GLU ALA VAL LYS MET LEU THR LEU LEU LYS GLU LYS TYR SEQRES 27 A 367 ASP PRO ILE ARG ARG ASN TYR TRP GLU TYR ARG ILE ARG SEQRES 28 A 367 GLN ILE THR ALA SER ALA ALA HIS ALA THR GLU ILE SER SEQRES 29 A 367 ALA SER ALA SEQRES 1 B 519 MET PRO VAL ILE ALA ALA THR GLY LYS HIS ARG ARG LYS SEQRES 2 B 519 VAL LEU PHE SER SER THR SER GLN GLY LEU SER VAL THR SEQRES 3 B 519 ALA GLY LYS PRO LYS GLY ARG LYS PHE SER ALA ASN LEU SEQRES 4 B 519 GLN VAL ASN SER ARG SER PRO ALA VAL THR SER SER HIS SEQRES 5 B 519 ASN HIS SER SER SER SER GLN SER GLY LYS MET GLY GLU SEQRES 6 B 519 SER GLN VAL HIS PRO GLY ILE PRO ALA LEU PHE ARG GLU SEQRES 7 B 519 PRO PRO LEU ILE HIS ASP LEU LEU SER THR GLU THR THR SEQRES 8 B 519 GLU LEU GLN SER GLU THR VAL ASN LYS CYS LEU PRO LEU SEQRES 9 B 519 LEU LYS GLY ILE HIS ASN SER GLN LYS GLY PRO PHE ASN SEQRES 10 B 519 LYS TYR GLY ILE PRO ALA LEU GLN ARG LYS ASP HIS LEU SEQRES 11 B 519 GLU TYR LEU TYR ASP SER LEU GLU ASP TYR PRO ALA SER SEQRES 12 B 519 PHE VAL ALA LEU ASP ALA SER ARG PRO TRP MET VAL TYR SEQRES 13 B 519 TRP ALA LEU ALA GLY LEU CYS LEU LEU GLY GLU ASP VAL SEQRES 14 B 519 THR ARG PHE ARG GLU ARG VAL ILE SER THR PHE THR ALA SEQRES 15 B 519 ALA GLN ASN SER THR GLY GLY ILE GLY GLY GLY HIS GLY SEQRES 16 B 519 GLN MET SER HIS VAL ALA SER SER TYR ALA ALA VAL LEU SEQRES 17 B 519 SER ILE ALA MET VAL GLY GLY GLU GLU ALA PHE LYS LEU SEQRES 18 B 519 ILE ASP ARG LYS ALA MET TRP LYS TRP LEU GLY LYS LEU SEQRES 19 B 519 LYS GLN PRO ASP GLY GLY PHE THR VAL CYS GLU GLY GLY SEQRES 20 B 519 GLU GLU ASP VAL ARG GLY ALA TYR CYS ALA MET VAL VAL SEQRES 21 B 519 HIS ALA LEU LEU ASP LEU PRO LEU ALA LEU PRO PRO GLU SEQRES 22 B 519 ALA GLU ALA ARG GLN ASN GLY LEU GLU THR PHE THR ASP SEQRES 23 B 519 GLY LEU PRO GLU TYR LEU SER ARG CYS GLN THR TYR GLU SEQRES 24 B 519 GLY GLY ILE SER GLY SER PRO GLY SER GLU ALA HIS GLY SEQRES 25 B 519 ALA TYR ALA PHE CYS ALA LEU ALA CYS LEU CYS LEU LEU SEQRES 26 B 519 GLY ARG PRO GLU VAL VAL VAL PRO ARG TYR MET ASN ILE SEQRES 27 B 519 ALA THR LEU LEU PRO TRP LEU SER ALA ARG GLN TYR ALA SEQRES 28 B 519 PRO GLU GLY GLY PHE SER GLY ARG THR ASN LYS LEU VAL SEQRES 29 B 519 ASP GLY CYS TYR SER HIS TRP VAL GLY ASN CYS TRP PRO SEQRES 30 B 519 LEU VAL GLN ALA ALA LEU ASP GLY THR GLN PRO LEU ALA SEQRES 31 B 519 GLY PRO LYS ARG SER SER VAL GLY ASN LEU TYR SER ARG SEQRES 32 B 519 GLU GLY LEU THR ARG TYR ILE LEU SER CYS CYS GLN CYS SEQRES 33 B 519 LYS LEU GLY GLY LEU ARG ASP LYS PRO GLY LYS HIS PRO SEQRES 34 B 519 ASP SER TYR HIS THR CYS TYR ALA LEU THR GLY LEU SER SEQRES 35 B 519 THR VAL GLN TYR TYR HIS TYR CYS THR ASP SER SER VAL SEQRES 36 B 519 SER SER LYS ASP ASP PHE SER SER ALA PHE SER TRP LYS SEQRES 37 B 519 HIS ASP PRO ASN PHE ALA SER ASP GLY GLN GLY SER ASP SEQRES 38 B 519 ILE GLY VAL PHE THR GLU ASN ASP ARG LEU VAL PRO PHE SEQRES 39 B 519 HIS PRO ILE PHE VAL ILE PRO HIS LYS SER ALA GLU ASP SEQRES 40 B 519 ILE ARG VAL TRP PHE GLU ASN GLN SER PHE ASP LEU HET EDO A 401 4 HET EDO A 402 4 HET ZN B 601 1 HET JAN B 602 34 HET FPP B 603 24 HET EDO B 604 4 HET EDO B 605 4 HET EDO B 606 4 HET K B 607 1 HETNAM EDO 1,2-ETHANEDIOL HETNAM ZN ZINC ION HETNAM JAN 6-[(S)-AMINO(4-CHLOROPHENYL)(1-METHYL-1H-IMIDAZOL-5- HETNAM 2 JAN YL)METHYL]-4-(3-CHLOROPHENYL)-1-METHYLQUINOLIN-2(1H)- HETNAM 3 JAN ONE HETNAM FPP FARNESYL DIPHOSPHATE HETNAM K POTASSIUM ION HETSYN EDO ETHYLENE GLYCOL HETSYN JAN R115777; TIPIFARNIB FORMUL 3 EDO 5(C2 H6 O2) FORMUL 5 ZN ZN 2+ FORMUL 6 JAN C27 H22 CL2 N4 O FORMUL 7 FPP C15 H28 O7 P2 FORMUL 11 K K 1+ FORMUL 12 HOH *595(H2 O) HELIX 1 1 LYS A 4 ALA A 12 5 9 HELIX 2 2 SER A 36 ALA A 52 1 17 HELIX 3 3 SER A 56 ASN A 70 1 15 HELIX 4 4 HIS A 73 GLY A 88 1 16 HELIX 5 5 ASP A 90 HIS A 105 1 16 HELIX 6 6 TYR A 109 SER A 120 1 12 HELIX 7 7 ARG A 131 ALA A 141 1 11 HELIX 8 8 SER A 146 LYS A 161 1 16 HELIX 9 9 HIS A 165 ASP A 179 1 15 HELIX 10 10 ASN A 182 GLY A 195 1 14 HELIX 11 11 PRO A 212 LYS A 216 5 5 HELIX 12 12 ASP A 223 ALA A 241 1 19 HELIX 13 13 ASN A 244 GLY A 259 1 16 HELIX 14 14 PRO A 261 GLU A 264 5 4 HELIX 15 15 TRP A 265 SER A 271 1 7 HELIX 16 16 SER A 289 GLU A 303 1 15 HELIX 17 17 GLY A 308 LYS A 323 1 16 HELIX 18 18 ASP A 325 ILE A 327 5 3 HELIX 19 19 ARG A 328 ILE A 349 1 22 HELIX 20 20 PRO B 73 ARG B 77 5 5 HELIX 21 21 THR B 88 LYS B 106 1 19 HELIX 22 22 GLN B 125 SER B 136 1 12 HELIX 23 23 PRO B 141 ALA B 149 5 9 HELIX 24 24 SER B 150 LEU B 165 1 16 HELIX 25 25 VAL B 169 ARG B 171 5 3 HELIX 26 26 PHE B 172 GLN B 184 1 13 HELIX 27 27 HIS B 199 GLY B 214 1 16 HELIX 28 28 GLY B 215 LYS B 220 1 6 HELIX 29 29 ASP B 223 LYS B 235 1 13 HELIX 30 30 ASP B 250 LEU B 264 1 15 HELIX 31 31 ALA B 274 GLY B 280 5 7 HELIX 32 32 GLY B 287 ARG B 294 1 8 HELIX 33 33 HIS B 311 LEU B 324 1 14 HELIX 34 34 ARG B 327 MET B 336 1 10 HELIX 35 35 ASN B 337 ALA B 347 1 11 HELIX 36 36 CYS B 367 VAL B 372 1 6 HELIX 37 37 ASN B 374 GLY B 385 1 12 HELIX 38 38 SER B 402 CYS B 414 1 13 HELIX 39 39 ASP B 430 GLN B 445 1 16 HELIX 40 40 SER B 462 PHE B 465 5 4 HELIX 41 41 THR B 486 ARG B 490 5 5 HELIX 42 42 PRO B 501 ASN B 514 1 14 SHEET 1 A 2 TYR B 446 CYS B 450 0 SHEET 2 A 2 TRP B 467 PRO B 471 -1 O ASP B 470 N TYR B 447 LINK O HOH A 740 K K B 607 1555 1555 3.32 LINK OD2 ASP B 365 ZN ZN B 601 1555 1555 2.12 LINK OD1 ASP B 365 ZN ZN B 601 1555 1555 2.54 LINK SG CYS B 367 ZN ZN B 601 1555 1555 2.35 LINK NE2 HIS B 433 ZN ZN B 601 1555 1555 2.12 LINK ZN ZN B 601 N2 JAN B 602 1555 1555 2.21 LINK O2 EDO B 605 K K B 607 1555 1555 2.90 CISPEP 1 GLY B 114 PRO B 115 0 -1.31 CISPEP 2 ALA B 351 PRO B 352 0 9.22 SITE 1 AC1 7 THR A 43 ARG A 47 MET A 50 HIS A 73 SITE 2 AC1 7 EDO A 402 HIS B 194 GLY B 195 SITE 1 AC2 7 TYR A 35 THR A 43 ARG A 47 EDO A 401 SITE 2 AC2 7 HOH A 577 HOH A 629 ASP B 148 SITE 1 AC3 4 ASP B 365 CYS B 367 HIS B 433 JAN B 602 SITE 1 AC4 13 SER B 150 TRP B 157 ASP B 365 CYS B 367 SITE 2 AC4 13 TYR B 368 ASP B 430 TYR B 432 HIS B 433 SITE 3 AC4 13 ZN B 601 FPP B 603 EDO B 604 EDO B 606 SITE 4 AC4 13 HOH B 843 SITE 1 AC5 18 ARG B 252 HIS B 311 ALA B 313 TYR B 314 SITE 2 AC5 18 ARG B 359 LYS B 362 TYR B 368 TRP B 371 SITE 3 AC5 18 TYR B 432 JAN B 602 HOH B 750 HOH B 829 SITE 4 AC5 18 HOH B 892 HOH B 940 HOH B1011 HOH B1012 SITE 5 AC5 18 HOH B1027 HOH B1039 SITE 1 AC6 8 TYR B 132 MET B 154 ASP B 430 SER B 431 SITE 2 AC6 8 TYR B 432 JAN B 602 HOH B 814 HOH B 833 SITE 1 AC7 7 ALA B 149 SER B 150 TRP B 153 HIS B 199 SITE 2 AC7 7 SER B 202 K B 607 HOH B 840 SITE 1 AC8 5 TYR A 109 ASP B 250 ARG B 252 TYR B 314 SITE 2 AC8 5 JAN B 602 SITE 1 AC9 4 TRP B 153 ALA B 201 ARG B 252 EDO B 605 CRYST1 63.537 90.658 83.163 90.00 111.09 90.00 P 1 21 1 2 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.015739 0.000000 0.006070 0.00000 SCALE2 0.000000 0.011030 0.000000 0.00000 SCALE3 0.000000 0.000000 0.012888 0.00000