HEADER TRANSCRIPTION 12-JUL-13 4LNX TITLE CRYSTAL STRUCTURE OF TR-ALPHA BOUND TO T4 IN A SECOND SITE CAVEAT 4LNX SHORT PEPTIDE LINK BETWEEN CAS A244 AND GLU A245 COMPND MOL_ID: 1; COMPND 2 MOLECULE: THYROID HORMONE RECEPTOR ALPHA; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: UNP P10827 RESIDUES 148-370, UNP Q6LDR0 RESIDUES 36-75; COMPND 5 SYNONYM: NUCLEAR RECEPTOR SUBFAMILY 1 GROUP A MEMBER 1, V-ERBA- COMPND 6 RELATED PROTEIN 7, EAR-7, C-ERBA-1, C-ERBA-ALPHA; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: THRA, EAR7, ERBA1, NR1A1, THRA1, THRA2; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS MAINLY ALPHA ORTHOGONAL BUNDLE, TRANSCRIPTION FACTOR, TRANSCRIPTION EXPDTA X-RAY DIFFRACTION AUTHOR A.C.PUHL,R.APARICIO,I.POLIKARPOV REVDAT 3 15-NOV-23 4LNX 1 REMARK SEQADV LINK ATOM REVDAT 2 16-APR-14 4LNX 1 JRNL REVDAT 1 19-MAR-14 4LNX 0 JRNL AUTH P.C.SOUZA,A.C.PUHL,L.MARTINEZ,R.APARICIO,A.S.NASCIMENTO, JRNL AUTH 2 A.C.FIGUEIRA,P.NGUYEN,P.WEBB,M.S.SKAF,I.POLIKARPOV JRNL TITL IDENTIFICATION OF A NEW HORMONE-BINDING SITE ON THE SURFACE JRNL TITL 2 OF THYROID HORMONE RECEPTOR. JRNL REF MOL.ENDOCRINOL. V. 28 534 2014 JRNL REFN ISSN 0888-8809 JRNL PMID 24552590 JRNL DOI 10.1210/ME.2013-1359 REMARK 2 REMARK 2 RESOLUTION. 2.05 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.8.1_1168 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.05 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 37.60 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.6 REMARK 3 NUMBER OF REFLECTIONS : 31249 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.157 REMARK 3 R VALUE (WORKING SET) : 0.155 REMARK 3 FREE R VALUE : 0.177 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.030 REMARK 3 FREE R VALUE TEST SET COUNT : 1573 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 37.6040 - 4.5567 1.00 2908 144 0.1712 0.1718 REMARK 3 2 4.5567 - 3.6177 1.00 2760 167 0.1332 0.1398 REMARK 3 3 3.6177 - 3.1607 0.99 2723 157 0.1488 0.1983 REMARK 3 4 3.1607 - 2.8718 0.99 2700 155 0.1646 0.1865 REMARK 3 5 2.8718 - 2.6660 0.99 2718 138 0.1635 0.1877 REMARK 3 6 2.6660 - 2.5089 0.99 2672 128 0.1584 0.1913 REMARK 3 7 2.5089 - 2.3833 0.98 2654 140 0.1505 0.1984 REMARK 3 8 2.3833 - 2.2795 0.98 2668 131 0.1498 0.1950 REMARK 3 9 2.2795 - 2.1918 0.98 2642 127 0.1554 0.1690 REMARK 3 10 2.1918 - 2.1162 0.98 2647 144 0.1558 0.1735 REMARK 3 11 2.1162 - 2.0500 0.97 2584 142 0.1798 0.2468 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.160 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 17.290 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 30.00 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 30.31 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.010 2309 REMARK 3 ANGLE : 1.375 3153 REMARK 3 CHIRALITY : 0.085 346 REMARK 3 PLANARITY : 0.005 403 REMARK 3 DIHEDRAL : 16.200 936 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 8 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 145 THROUGH 161 ) REMARK 3 ORIGIN FOR THE GROUP (A): 14.4341 3.7230 50.9385 REMARK 3 T TENSOR REMARK 3 T11: 0.4100 T22: 0.3171 REMARK 3 T33: 0.3666 T12: 0.0069 REMARK 3 T13: 0.1541 T23: -0.0575 REMARK 3 L TENSOR REMARK 3 L11: 8.6704 L22: 7.1359 REMARK 3 L33: 7.3714 L12: 7.2600 REMARK 3 L13: -7.7242 L23: -6.7977 REMARK 3 S TENSOR REMARK 3 S11: -0.7364 S12: 0.3431 S13: -0.2418 REMARK 3 S21: -0.0413 S22: 0.1968 S23: 0.3528 REMARK 3 S31: 1.2738 S32: -0.6651 S33: 0.3634 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 162 THROUGH 178 ) REMARK 3 ORIGIN FOR THE GROUP (A): 24.0852 21.8713 51.0124 REMARK 3 T TENSOR REMARK 3 T11: 0.1477 T22: 0.3143 REMARK 3 T33: 0.1024 T12: -0.0054 REMARK 3 T13: 0.0400 T23: -0.0102 REMARK 3 L TENSOR REMARK 3 L11: 2.1992 L22: 8.7911 REMARK 3 L33: 3.5614 L12: 3.6846 REMARK 3 L13: -1.5869 L23: -4.6586 REMARK 3 S TENSOR REMARK 3 S11: 0.1026 S12: -0.4536 S13: 0.0931 REMARK 3 S21: 0.3765 S22: -0.2313 S23: -0.1307 REMARK 3 S31: -0.0734 S32: 0.0417 S33: 0.1007 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 179 THROUGH 235 ) REMARK 3 ORIGIN FOR THE GROUP (A): 24.9529 42.6484 31.4139 REMARK 3 T TENSOR REMARK 3 T11: 0.2045 T22: 0.2348 REMARK 3 T33: 0.2741 T12: 0.0375 REMARK 3 T13: 0.0233 T23: 0.0420 REMARK 3 L TENSOR REMARK 3 L11: 1.6355 L22: 2.7507 REMARK 3 L33: 2.6302 L12: -0.0539 REMARK 3 L13: -0.2218 L23: -1.7544 REMARK 3 S TENSOR REMARK 3 S11: 0.1341 S12: 0.0971 S13: 0.2850 REMARK 3 S21: 0.0722 S22: 0.3153 S23: 0.5167 REMARK 3 S31: -0.4098 S32: -0.5320 S33: -0.3784 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 236 THROUGH 266 ) REMARK 3 ORIGIN FOR THE GROUP (A): 34.9360 29.6662 41.3245 REMARK 3 T TENSOR REMARK 3 T11: 0.1300 T22: 0.1317 REMARK 3 T33: 0.0916 T12: -0.0068 REMARK 3 T13: -0.0104 T23: -0.0049 REMARK 3 L TENSOR REMARK 3 L11: 7.6561 L22: 1.7117 REMARK 3 L33: 4.6842 L12: -0.5436 REMARK 3 L13: 4.0299 L23: -1.0978 REMARK 3 S TENSOR REMARK 3 S11: -0.2762 S12: 0.0459 S13: 0.3943 REMARK 3 S21: 0.0518 S22: -0.0284 S23: -0.0913 REMARK 3 S31: -0.2992 S32: 0.1047 S33: 0.2745 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 267 THROUGH 309 ) REMARK 3 ORIGIN FOR THE GROUP (A): 18.5404 34.9927 26.6021 REMARK 3 T TENSOR REMARK 3 T11: 0.1689 T22: 0.3230 REMARK 3 T33: 0.2474 T12: 0.0239 REMARK 3 T13: -0.0402 T23: 0.0812 REMARK 3 L TENSOR REMARK 3 L11: 2.0724 L22: 4.8598 REMARK 3 L33: 0.9851 L12: 0.2988 REMARK 3 L13: 0.4085 L23: -1.2854 REMARK 3 S TENSOR REMARK 3 S11: -0.0019 S12: 0.4094 S13: 0.2766 REMARK 3 S21: -0.1428 S22: 0.2115 S23: 0.6171 REMARK 3 S31: -0.1414 S32: -0.4458 S33: -0.1653 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 310 THROUGH 362 ) REMARK 3 ORIGIN FOR THE GROUP (A): 28.7820 18.3485 40.8046 REMARK 3 T TENSOR REMARK 3 T11: 0.1467 T22: 0.1384 REMARK 3 T33: 0.0707 T12: 0.0242 REMARK 3 T13: 0.0275 T23: -0.0165 REMARK 3 L TENSOR REMARK 3 L11: 3.2428 L22: 2.4701 REMARK 3 L33: 2.5109 L12: 1.1982 REMARK 3 L13: 0.5057 L23: -0.0944 REMARK 3 S TENSOR REMARK 3 S11: -0.0236 S12: 0.1131 S13: -0.2556 REMARK 3 S21: 0.0459 S22: 0.0042 S23: -0.0594 REMARK 3 S31: 0.0914 S32: -0.0008 S33: 0.0275 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 363 THROUGH 391 ) REMARK 3 ORIGIN FOR THE GROUP (A): 31.2019 28.0687 26.9293 REMARK 3 T TENSOR REMARK 3 T11: 0.1892 T22: 0.2255 REMARK 3 T33: 0.2714 T12: 0.0214 REMARK 3 T13: 0.0170 T23: 0.0072 REMARK 3 L TENSOR REMARK 3 L11: 6.3182 L22: 8.9570 REMARK 3 L33: 2.3881 L12: 8.7143 REMARK 3 L13: -4.7148 L23: -5.4387 REMARK 3 S TENSOR REMARK 3 S11: -0.2596 S12: 0.1284 S13: -0.3786 REMARK 3 S21: -0.2451 S22: -0.0198 S23: -0.5966 REMARK 3 S31: 0.1501 S32: -0.0523 S33: 0.1334 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 393 THROUGH 407 ) REMARK 3 ORIGIN FOR THE GROUP (A): 39.2731 43.9124 32.1266 REMARK 3 T TENSOR REMARK 3 T11: 0.2427 T22: 0.2679 REMARK 3 T33: 0.2564 T12: -0.0404 REMARK 3 T13: -0.0300 T23: 0.0667 REMARK 3 L TENSOR REMARK 3 L11: 7.2694 L22: 4.4019 REMARK 3 L33: 7.9662 L12: 0.7044 REMARK 3 L13: 1.1399 L23: -5.3627 REMARK 3 S TENSOR REMARK 3 S11: 0.1307 S12: 0.1192 S13: -0.2156 REMARK 3 S21: 0.2474 S22: -0.6796 S23: -1.3166 REMARK 3 S31: -0.3159 S32: 0.8524 S33: 0.5518 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4LNX COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 01-AUG-13. REMARK 100 THE DEPOSITION ID IS D_1000080866. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 19-MAR-04 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.2 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU ULTRAX 18 REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418 REMARK 200 MONOCHROMATOR : OSMIC REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : MAR SCANNER 345 MM PLATE REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALA 3.1.9 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 31309 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.050 REMARK 200 RESOLUTION RANGE LOW (A) : 63.365 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.9 REMARK 200 DATA REDUNDANCY : 14.60 REMARK 200 R MERGE (I) : 0.06800 REMARK 200 R SYM (I) : 0.06800 REMARK 200 FOR THE DATA SET : 31.8000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.05 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.16 REMARK 200 COMPLETENESS FOR SHELL (%) : 97.6 REMARK 200 DATA REDUNDANCY IN SHELL : 14.90 REMARK 200 R MERGE FOR SHELL (I) : 0.37500 REMARK 200 R SYM FOR SHELL (I) : 0.37500 REMARK 200 FOR SHELL : 2.000 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: AMORE REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 69.18 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.99 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 1.0 M SODIUM CACODYLATE AND 0.1 M REMARK 280 SODIUM ACETATE THREEHYDRATE, PH 7.2, VAPOR DIFFUSION, HANGING REMARK 280 DROP, TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 29.87200 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 50.93550 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 40.46200 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 50.93550 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 29.87200 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 40.46200 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 144 REMARK 465 GLN A 408 REMARK 465 GLU A 409 REMARK 465 VAL A 410 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU A 149 CG CD OE1 OE2 REMARK 470 LEU A 154 CG CD1 CD2 REMARK 470 HIS A 184 CG ND1 CD2 CE1 NE2 REMARK 470 LYS A 186 CD CE NZ REMARK 470 GLN A 187 CG CD OE1 NE2 REMARK 470 LYS A 190 CG CD CE NZ REMARK 470 GLU A 301 CD OE1 OE2 REMARK 470 LYS A 357 CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 GLU A 315 CD GLU A 315 OE1 -0.075 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLN A 156 -61.63 -127.38 REMARK 500 GLN A 181 -6.06 83.95 REMARK 500 MET A 325 49.29 -87.92 REMARK 500 CAS A 334 55.27 -92.24 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE T44 A 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE T3 A 502 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3ILZ RELATED DB: PDB REMARK 900 THE SAME PROTEIN COMPLEXED WITH GC-1 REMARK 900 RELATED ID: 3JZB RELATED DB: PDB REMARK 900 THE SAME PROTEIN COMPLEXED WITH TRIAC REMARK 900 RELATED ID: 4LNW RELATED DB: PDB REMARK 999 REMARK 999 SEQUENCE REMARK 999 THE SEQUENCE IN THIS ENTRY CORRESPONDS TO P10827-2, ISOFORM ALPHA-1 DBREF 4LNX A 148 410 UNP P10827 THA_HUMAN 148 410 SEQADV 4LNX GLY A 144 UNP P10827 EXPRESSION TAG SEQADV 4LNX SER A 145 UNP P10827 EXPRESSION TAG SEQADV 4LNX HIS A 146 UNP P10827 EXPRESSION TAG SEQADV 4LNX MET A 147 UNP P10827 EXPRESSION TAG SEQRES 1 A 267 GLY SER HIS MET GLU GLU MET ILE ARG SER LEU GLN GLN SEQRES 2 A 267 ARG PRO GLU PRO THR PRO GLU GLU TRP ASP LEU ILE HIS SEQRES 3 A 267 ILE ALA THR GLU ALA HIS ARG SER THR ASN ALA GLN GLY SEQRES 4 A 267 SER HIS TRP LYS GLN ARG ARG LYS PHE LEU PRO ASP ASP SEQRES 5 A 267 ILE GLY GLN SER PRO ILE VAL SER MET PRO ASP GLY ASP SEQRES 6 A 267 LYS VAL ASP LEU GLU ALA PHE SER GLU PHE THR LYS ILE SEQRES 7 A 267 ILE THR PRO ALA ILE THR ARG VAL VAL ASP PHE ALA LYS SEQRES 8 A 267 LYS LEU PRO MET PHE SER GLU LEU PRO CAS GLU ASP GLN SEQRES 9 A 267 ILE ILE LEU LEU LYS GLY CYS CYS MET GLU ILE MET SER SEQRES 10 A 267 LEU ARG ALA ALA VAL ARG TYR ASP PRO GLU SER ASP THR SEQRES 11 A 267 LEU THR LEU SER GLY GLU MET ALA VAL LYS ARG GLU GLN SEQRES 12 A 267 LEU LYS ASN GLY GLY LEU GLY VAL VAL SER ASP ALA ILE SEQRES 13 A 267 PHE GLU LEU GLY LYS SER LEU SER ALA PHE ASN LEU ASP SEQRES 14 A 267 ASP THR GLU VAL ALA LEU LEU GLN ALA VAL LEU LEU MET SEQRES 15 A 267 SER THR ASP ARG SER GLY LEU LEU CAS VAL ASP LYS ILE SEQRES 16 A 267 GLU LYS SER GLN GLU ALA TYR LEU LEU ALA PHE GLU HIS SEQRES 17 A 267 TYR VAL ASN HIS ARG LYS HIS ASN ILE PRO HIS PHE TRP SEQRES 18 A 267 PRO LYS LEU LEU MET LYS VAL THR ASP LEU ARG MET ILE SEQRES 19 A 267 GLY ALA CAS HIS ALA SER ARG PHE LEU HIS MET LYS VAL SEQRES 20 A 267 GLU CAS PRO THR GLU LEU PHE PRO PRO LEU PHE LEU GLU SEQRES 21 A 267 VAL PHE GLU ASP GLN GLU VAL MODRES 4LNX CAS A 244 CYS S-(DIMETHYLARSENIC)CYSTEINE MODRES 4LNX CAS A 334 CYS S-(DIMETHYLARSENIC)CYSTEINE MODRES 4LNX CAS A 380 CYS S-(DIMETHYLARSENIC)CYSTEINE MODRES 4LNX CAS A 392 CYS S-(DIMETHYLARSENIC)CYSTEINE HET CAS A 244 9 HET CAS A 334 9 HET CAS A 380 9 HET CAS A 392 9 HET T44 A 501 24 HET T3 A 502 23 HETNAM CAS S-(DIMETHYLARSENIC)CYSTEINE HETNAM T44 3,5,3',5'-TETRAIODO-L-THYRONINE HETNAM T3 3,5,3'TRIIODOTHYRONINE HETSYN T3 T3; THYROID HORMONE; LIOTHYRONINE FORMUL 1 CAS 4(C5 H12 AS N O2 S) FORMUL 2 T44 C15 H11 I4 N O4 FORMUL 3 T3 C15 H12 I3 N O4 FORMUL 4 HOH *267(H2 O) HELIX 1 1 SER A 145 ARG A 152 1 8 HELIX 2 2 THR A 161 SER A 177 1 17 HELIX 3 3 HIS A 184 ARG A 189 1 6 HELIX 4 4 ASP A 211 ILE A 221 1 11 HELIX 5 5 ILE A 221 LYS A 235 1 15 HELIX 6 6 LEU A 236 GLU A 241 1 6 HELIX 7 7 PRO A 243 VAL A 265 1 23 HELIX 8 8 LYS A 283 GLY A 290 1 8 HELIX 9 9 GLY A 293 SER A 307 1 15 HELIX 10 10 ALA A 308 ASN A 310 5 3 HELIX 11 11 ASP A 312 MET A 325 1 14 HELIX 12 12 CAS A 334 LYS A 357 1 24 HELIX 13 13 HIS A 362 CAS A 392 1 31 HELIX 14 14 PRO A 393 PHE A 397 5 5 HELIX 15 15 PRO A 398 GLU A 406 1 9 SHEET 1 A 3 LYS A 190 PHE A 191 0 SHEET 2 A 3 MET A 280 VAL A 282 1 O ALA A 281 N LYS A 190 SHEET 3 A 3 LEU A 274 LEU A 276 -1 N LEU A 276 O MET A 280 LINK C PRO A 243 N CAS A 244 1555 1555 1.32 LINK C CAS A 244 N GLU A 245 1555 1555 1.31 LINK C LEU A 333 N CAS A 334 1555 1555 1.33 LINK C CAS A 334 N VAL A 335 1555 1555 1.33 LINK C ALA A 379 N CAS A 380 1555 1555 1.33 LINK C CAS A 380 N HIS A 381 1555 1555 1.33 LINK C GLU A 391 N CAS A 392 1555 1555 1.33 LINK C CAS A 392 N PRO A 393 1555 1555 1.34 SITE 1 AC1 12 SER A 199 ASP A 211 LEU A 212 GLU A 213 SITE 2 AC1 12 SER A 216 SER A 326 GLU A 339 GLN A 342 SITE 3 AC1 12 LEU A 368 THR A 372 ARG A 375 HOH A 859 SITE 1 AC2 16 PHE A 218 ILE A 222 ARG A 228 MET A 259 SITE 2 AC2 16 ARG A 262 THR A 275 LEU A 276 SER A 277 SITE 3 AC2 16 GLY A 290 LEU A 292 ILE A 299 HIS A 381 SITE 4 AC2 16 PHE A 401 HOH A 607 HOH A 623 HOH A 647 CRYST1 59.744 80.924 101.871 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.016738 0.000000 0.000000 0.00000 SCALE2 0.000000 0.012357 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009816 0.00000