HEADER IMMUNE SYSTEM 12-JUL-13 4LOI TITLE CRYSTAL STRUCTURE OF HSTING(H232) IN COMPLEX WITH C[G(2',5')PA(2',5') TITLE 2 P] COMPND MOL_ID: 1; COMPND 2 MOLECULE: STIMULATOR OF INTERFERON GENES PROTEIN; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: C-DI-GMP-BINDING DOMAIN; COMPND 5 SYNONYM: HSTING, ENDOPLASMIC RETICULUM INTERFERON STIMULATOR, ERIS, COMPND 6 MEDIATOR OF IRF3 ACTIVATION, HMITA, TRANSMEMBRANE PROTEIN 173; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: TMEM173, ERIS, MITA, STING; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS INNATE IMMUNITY, IMMUNE SYSTEM EXPDTA X-RAY DIFFRACTION AUTHOR P.GAO,D.J.PATEL REVDAT 3 28-FEB-24 4LOI 1 REMARK SEQADV REVDAT 2 02-OCT-13 4LOI 1 JRNL REVDAT 1 14-AUG-13 4LOI 0 JRNL AUTH P.GAO,M.ASCANO,T.ZILLINGER,W.WANG,P.DAI,A.A.SERGANOV, JRNL AUTH 2 B.L.GAFFNEY,S.SHUMAN,R.A.JONES,L.DENG,G.HARTMANN,W.BARCHET, JRNL AUTH 3 T.TUSCHL,D.J.PATEL JRNL TITL STRUCTURE-FUNCTION ANALYSIS OF STING ACTIVATION BY JRNL TITL 2 C[G(2',5')PA(3',5')P] AND TARGETING BY ANTIVIRAL DMXAA. JRNL REF CELL(CAMBRIDGE,MASS.) V. 154 748 2013 JRNL REFN ISSN 0092-8674 JRNL PMID 23910378 JRNL DOI 10.1016/J.CELL.2013.07.023 REMARK 2 REMARK 2 RESOLUTION. 1.89 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.7.0032 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.89 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 36.58 REMARK 3 DATA CUTOFF (SIGMA(F)) : 2.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 3 NUMBER OF REFLECTIONS : 30840 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.177 REMARK 3 R VALUE (WORKING SET) : 0.176 REMARK 3 FREE R VALUE : 0.199 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1644 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.89 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.94 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2196 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 98.39 REMARK 3 BIN R VALUE (WORKING SET) : 0.2160 REMARK 3 BIN FREE R VALUE SET COUNT : 119 REMARK 3 BIN FREE R VALUE : 0.2550 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2899 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 50 REMARK 3 SOLVENT ATOMS : 225 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 30.93 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.64000 REMARK 3 B22 (A**2) : -0.74000 REMARK 3 B33 (A**2) : 1.38000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.144 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.124 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.076 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 2.534 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.957 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.946 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3076 ; 0.018 ; 0.020 REMARK 3 BOND LENGTHS OTHERS (A): 2833 ; 0.002 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4190 ; 1.790 ; 2.015 REMARK 3 BOND ANGLES OTHERS (DEGREES): 6493 ; 0.879 ; 3.011 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 360 ; 6.255 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 158 ;35.311 ;23.861 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 505 ;15.087 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 28 ;19.483 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 459 ; 0.134 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3480 ; 0.008 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 738 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1449 ; 3.147 ; 2.804 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1448 ; 3.147 ; 2.802 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1806 ; 4.579 ; 4.187 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 1807 ; 4.578 ; 4.189 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1624 ; 4.121 ; 3.236 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 1621 ; 4.113 ; 3.230 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 2377 ; 6.392 ; 4.651 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 12577 ; 9.813 ;26.798 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 12431 ; 9.784 ;26.672 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 4LOI COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 02-AUG-13. REMARK 100 THE DEPOSITION ID IS D_1000080887. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 13-JUN-13 REMARK 200 TEMPERATURE (KELVIN) : 200 REMARK 200 PH : 4.2 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : NSLS REMARK 200 BEAMLINE : X29A REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.075 REMARK 200 MONOCHROMATOR : SI 111 CHANNEL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 30840 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.890 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.89 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.97 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 46.45 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.30 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 1.6 M NAH2PO4, 0.4 M NA2HPO4, 0.1 M REMARK 280 PHOSPHATE-CITRATE, PH 4.2, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X+1/2,Y+1/2,-Z REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 46.97400 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 58.20400 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 46.97400 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 58.20400 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4150 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 16220 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -24.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 TYR A 186 REMARK 465 ASN A 187 REMARK 465 ASN A 188 REMARK 465 LEU A 189 REMARK 465 LEU A 190 REMARK 465 GLU A 304 REMARK 465 SER A 305 REMARK 465 GLU A 339 REMARK 465 GLU A 340 REMARK 465 VAL A 341 REMARK 465 GLU B 337 REMARK 465 LYS B 338 REMARK 465 GLU B 339 REMARK 465 GLU B 340 REMARK 465 VAL B 341 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 NH2 ARG A 281 OD2 ASP A 301 1556 1.68 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 GLU A 296 CD GLU A 296 OE1 -0.082 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 178 NE - CZ - NH1 ANGL. DEV. = 5.5 DEGREES REMARK 500 ARG A 178 NE - CZ - NH2 ANGL. DEV. = -4.3 DEGREES REMARK 500 ASP B 205 CB - CG - OD1 ANGL. DEV. = 5.5 DEGREES REMARK 500 ARG B 331 NE - CZ - NH1 ANGL. DEV. = 3.4 DEGREES REMARK 500 ARG B 331 NE - CZ - NH2 ANGL. DEV. = -3.7 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 TYR A 167 -70.26 -146.03 REMARK 500 ASP A 319 40.14 -88.53 REMARK 500 TYR B 167 -66.11 -144.05 REMARK 500 ASN B 187 72.16 -152.89 REMARK 500 ASN B 188 40.51 -88.36 REMARK 500 ASP B 216 125.58 -172.67 REMARK 500 ASP B 319 38.90 -94.98 REMARK 500 SER B 321 -62.59 74.74 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PO4 A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE 1YC B 401 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4LOH RELATED DB: PDB REMARK 900 RELATED ID: 4LOJ RELATED DB: PDB REMARK 900 RELATED ID: 4LOK RELATED DB: PDB REMARK 900 RELATED ID: 4LOL RELATED DB: PDB DBREF 4LOI A 155 341 UNP Q86WV6 STING_HUMAN 155 341 DBREF 4LOI B 155 341 UNP Q86WV6 STING_HUMAN 155 341 SEQADV 4LOI SER A 154 UNP Q86WV6 EXPRESSION TAG SEQADV 4LOI SER B 154 UNP Q86WV6 EXPRESSION TAG SEQRES 1 A 188 SER VAL ALA HIS GLY LEU ALA TRP SER TYR TYR ILE GLY SEQRES 2 A 188 TYR LEU ARG LEU ILE LEU PRO GLU LEU GLN ALA ARG ILE SEQRES 3 A 188 ARG THR TYR ASN GLN HIS TYR ASN ASN LEU LEU ARG GLY SEQRES 4 A 188 ALA VAL SER GLN ARG LEU TYR ILE LEU LEU PRO LEU ASP SEQRES 5 A 188 CYS GLY VAL PRO ASP ASN LEU SER MET ALA ASP PRO ASN SEQRES 6 A 188 ILE ARG PHE LEU ASP LYS LEU PRO GLN GLN THR GLY ASP SEQRES 7 A 188 HIS ALA GLY ILE LYS ASP ARG VAL TYR SER ASN SER ILE SEQRES 8 A 188 TYR GLU LEU LEU GLU ASN GLY GLN ARG ALA GLY THR CYS SEQRES 9 A 188 VAL LEU GLU TYR ALA THR PRO LEU GLN THR LEU PHE ALA SEQRES 10 A 188 MET SER GLN TYR SER GLN ALA GLY PHE SER ARG GLU ASP SEQRES 11 A 188 ARG LEU GLU GLN ALA LYS LEU PHE CYS ARG THR LEU GLU SEQRES 12 A 188 ASP ILE LEU ALA ASP ALA PRO GLU SER GLN ASN ASN CYS SEQRES 13 A 188 ARG LEU ILE ALA TYR GLN GLU PRO ALA ASP ASP SER SER SEQRES 14 A 188 PHE SER LEU SER GLN GLU VAL LEU ARG HIS LEU ARG GLN SEQRES 15 A 188 GLU GLU LYS GLU GLU VAL SEQRES 1 B 188 SER VAL ALA HIS GLY LEU ALA TRP SER TYR TYR ILE GLY SEQRES 2 B 188 TYR LEU ARG LEU ILE LEU PRO GLU LEU GLN ALA ARG ILE SEQRES 3 B 188 ARG THR TYR ASN GLN HIS TYR ASN ASN LEU LEU ARG GLY SEQRES 4 B 188 ALA VAL SER GLN ARG LEU TYR ILE LEU LEU PRO LEU ASP SEQRES 5 B 188 CYS GLY VAL PRO ASP ASN LEU SER MET ALA ASP PRO ASN SEQRES 6 B 188 ILE ARG PHE LEU ASP LYS LEU PRO GLN GLN THR GLY ASP SEQRES 7 B 188 HIS ALA GLY ILE LYS ASP ARG VAL TYR SER ASN SER ILE SEQRES 8 B 188 TYR GLU LEU LEU GLU ASN GLY GLN ARG ALA GLY THR CYS SEQRES 9 B 188 VAL LEU GLU TYR ALA THR PRO LEU GLN THR LEU PHE ALA SEQRES 10 B 188 MET SER GLN TYR SER GLN ALA GLY PHE SER ARG GLU ASP SEQRES 11 B 188 ARG LEU GLU GLN ALA LYS LEU PHE CYS ARG THR LEU GLU SEQRES 12 B 188 ASP ILE LEU ALA ASP ALA PRO GLU SER GLN ASN ASN CYS SEQRES 13 B 188 ARG LEU ILE ALA TYR GLN GLU PRO ALA ASP ASP SER SER SEQRES 14 B 188 PHE SER LEU SER GLN GLU VAL LEU ARG HIS LEU ARG GLN SEQRES 15 B 188 GLU GLU LYS GLU GLU VAL HET PO4 A 401 5 HET 1YC B 401 90 HETNAM PO4 PHOSPHATE ION HETNAM 1YC 2-AMINO-9-[(1R,3R,6R,8R,9R,11S,14R,16R,17R,18R)-16-(6- HETNAM 2 1YC AMINO-9H-PURIN-9-YL)-3,11,17,18-TETRAHYDROXY-3,11- HETNAM 3 1YC DIOXIDO-2,4,7,10,12,15-HEXAOXA-3,11- HETNAM 4 1YC DIPHOSPHATRICYCLO[12.2.1.1~6,9~]OCTADEC-8-YL]-1,9- HETNAM 5 1YC DIHYDRO-6H-PURIN-6-ONE FORMUL 3 PO4 O4 P 3- FORMUL 4 1YC C20 H24 N10 O13 P2 FORMUL 5 HOH *225(H2 O) HELIX 1 1 SER A 154 TYR A 167 1 14 HELIX 2 2 TYR A 167 ASN A 183 1 17 HELIX 3 3 ASN A 211 ASP A 216 1 6 HELIX 4 4 THR A 263 TYR A 274 1 12 HELIX 5 5 SER A 275 GLY A 278 5 4 HELIX 6 6 SER A 280 ASP A 301 1 22 HELIX 7 7 SER A 324 GLU A 337 1 14 HELIX 8 8 VAL B 155 TYR B 167 1 13 HELIX 9 9 TYR B 167 TYR B 186 1 20 HELIX 10 10 ASN B 211 ASP B 216 5 6 HELIX 11 11 THR B 263 TYR B 274 1 12 HELIX 12 12 SER B 275 GLY B 278 5 4 HELIX 13 13 SER B 280 ALA B 302 1 23 HELIX 14 14 SER B 324 GLU B 336 1 13 SHEET 1 A 5 ILE A 219 LYS A 224 0 SHEET 2 A 5 SER A 243 GLU A 249 -1 O ILE A 244 N ASP A 223 SHEET 3 A 5 GLN A 252 TYR A 261 -1 O ALA A 254 N LEU A 247 SHEET 4 A 5 LEU A 198 PRO A 203 1 N TYR A 199 O VAL A 258 SHEET 5 A 5 CYS A 309 TYR A 314 1 O ILE A 312 N LEU A 202 SHEET 1 B 2 GLN A 228 HIS A 232 0 SHEET 2 B 2 ILE A 235 TYR A 240 -1 O TYR A 240 N GLN A 228 SHEET 1 C 5 ILE B 219 LYS B 224 0 SHEET 2 C 5 SER B 243 GLU B 249 -1 O ILE B 244 N ASP B 223 SHEET 3 C 5 GLN B 252 TYR B 261 -1 O ALA B 254 N LEU B 247 SHEET 4 C 5 LEU B 198 PRO B 203 1 N LEU B 201 O GLU B 260 SHEET 5 C 5 CYS B 309 TYR B 314 1 O ILE B 312 N LEU B 202 SHEET 1 D 2 GLN B 228 HIS B 232 0 SHEET 2 D 2 ILE B 235 TYR B 240 -1 O TYR B 240 N GLN B 228 CISPEP 1 ARG A 191 GLY A 192 0 5.40 SITE 1 AC1 3 ARG A 293 ASP A 297 HIS B 185 SITE 1 AC2 26 SER A 162 TYR A 167 ARG A 238 TYR A 240 SITE 2 AC2 26 GLU A 260 THR A 263 PRO A 264 HOH A 502 SITE 3 AC2 26 HOH A 503 HOH A 508 HOH A 512 HOH A 513 SITE 4 AC2 26 HOH A 593 SER B 162 TYR B 167 ILE B 235 SITE 5 AC2 26 ARG B 238 TYR B 240 GLU B 260 THR B 263 SITE 6 AC2 26 PRO B 264 HOH B 502 HOH B 507 HOH B 511 SITE 7 AC2 26 HOH B 514 HOH B 619 CRYST1 93.948 116.408 36.164 90.00 90.00 90.00 P 21 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010644 0.000000 0.000000 0.00000 SCALE2 0.000000 0.008590 0.000000 0.00000 SCALE3 0.000000 0.000000 0.027652 0.00000