HEADER HYDROLASE/DNA 16-JUL-13 4LQ0 TITLE CRYSTAL STRUCTURE OF THE I-LTRWI LAGLIDADG HOMING ENDONUCLEASE BOUND TITLE 2 TO TARGET DNA. COMPND MOL_ID: 1; COMPND 2 MOLECULE: LAGLIDADG HOMING ENDONUCLEASE; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: LAGLIDADG HOMING ENDONUCLEASE I-LTRII; COMPND 5 ENGINEERED: YES; COMPND 6 MOL_ID: 2; COMPND 7 MOLECULE: TOP STRAND DNA TARGET; COMPND 8 CHAIN: B; COMPND 9 ENGINEERED: YES; COMPND 10 MOL_ID: 3; COMPND 11 MOLECULE: BOTTOM STRAND DNA TARGET; COMPND 12 CHAIN: C; COMPND 13 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: LEPTOGRAPHIUM TRUNCATUM; SOURCE 3 ORGANISM_TAXID: 330483; SOURCE 4 STRAIN: WIN(M)1435; SOURCE 5 GENE: SMALL SUBUNIT RBOSOMAL RNA, MITOCHONDRIAL; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21 (DE3) RIL+; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET21D; SOURCE 11 MOL_ID: 2; SOURCE 12 SYNTHETIC: YES; SOURCE 13 MOL_ID: 3; SOURCE 14 SYNTHETIC: YES KEYWDS LADLIDADG, PROTEIN-DNA COMPLEX, HOMING ENDONUCLEASE, HYDROLASE, KEYWDS 2 HYDROLASE-DNA COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR J.CHIK,B.SHEN,B.STODDARD REVDAT 2 20-SEP-23 4LQ0 1 REMARK LINK REVDAT 1 16-JUL-14 4LQ0 0 JRNL AUTH J.CHIK,B.SHEN,B.STODDARD JRNL TITL STRUCTURAL COMPARISONS OF LAGLIDADG HOMING ENDONUCLEASES. JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.68 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.7.0025 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.68 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 44.34 REMARK 3 DATA CUTOFF (SIGMA(F)) : 1.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 94.6 REMARK 3 NUMBER OF REFLECTIONS : 13100 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.200 REMARK 3 R VALUE (WORKING SET) : 0.197 REMARK 3 FREE R VALUE : 0.271 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 688 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.68 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.75 REMARK 3 REFLECTION IN BIN (WORKING SET) : 860 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 85.96 REMARK 3 BIN R VALUE (WORKING SET) : 0.2880 REMARK 3 BIN FREE R VALUE SET COUNT : 40 REMARK 3 BIN FREE R VALUE : 0.3440 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2421 REMARK 3 NUCLEIC ACID ATOMS : 1060 REMARK 3 HETEROGEN ATOMS : 18 REMARK 3 SOLVENT ATOMS : 18 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 47.67 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 57.57 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.30000 REMARK 3 B22 (A**2) : -0.33000 REMARK 3 B33 (A**2) : 0.63000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): 0.391 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.278 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 30.631 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.947 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.894 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3667 ; 0.011 ; 0.017 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 5159 ; 1.646 ; 1.694 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 297 ; 6.612 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 110 ;37.066 ;25.364 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 490 ;22.499 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 7 ;22.722 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 532 ; 0.118 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2335 ; 0.009 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 6 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 7 A 304 REMARK 3 ORIGIN FOR THE GROUP (A): -11.7679 -1.9256 41.2960 REMARK 3 T TENSOR REMARK 3 T11: 0.0548 T22: 0.0946 REMARK 3 T33: 0.3015 T12: -0.0140 REMARK 3 T13: 0.0268 T23: -0.0134 REMARK 3 L TENSOR REMARK 3 L11: 1.3175 L22: 2.1474 REMARK 3 L33: 5.2493 L12: -1.0193 REMARK 3 L13: 1.2241 L23: -2.0552 REMARK 3 S TENSOR REMARK 3 S11: 0.0824 S12: 0.0601 S13: -0.1595 REMARK 3 S21: -0.1247 S22: -0.0548 S23: 0.0196 REMARK 3 S31: 0.1404 S32: -0.0101 S33: -0.0276 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 1 B 26 REMARK 3 ORIGIN FOR THE GROUP (A): -6.4001 5.9523 44.2324 REMARK 3 T TENSOR REMARK 3 T11: 0.0454 T22: 0.1288 REMARK 3 T33: 0.1792 T12: -0.0102 REMARK 3 T13: -0.0093 T23: 0.0440 REMARK 3 L TENSOR REMARK 3 L11: 1.6908 L22: 2.7076 REMARK 3 L33: 10.9612 L12: -0.6516 REMARK 3 L13: -0.7300 L23: 0.6073 REMARK 3 S TENSOR REMARK 3 S11: 0.1281 S12: 0.0312 S13: 0.0951 REMARK 3 S21: 0.1074 S22: -0.0554 S23: -0.1985 REMARK 3 S31: -0.5429 S32: -0.0853 S33: -0.0727 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : C 1 C 26 REMARK 3 ORIGIN FOR THE GROUP (A): -5.6084 5.7056 42.4300 REMARK 3 T TENSOR REMARK 3 T11: 0.1176 T22: 0.1435 REMARK 3 T33: 0.1707 T12: 0.0069 REMARK 3 T13: -0.0160 T23: 0.0317 REMARK 3 L TENSOR REMARK 3 L11: 1.7292 L22: 2.1053 REMARK 3 L33: 12.7604 L12: -0.3931 REMARK 3 L13: -1.1773 L23: -0.4306 REMARK 3 S TENSOR REMARK 3 S11: 0.2447 S12: 0.1292 S13: 0.1274 REMARK 3 S21: 0.0023 S22: 0.0526 S23: -0.1467 REMARK 3 S31: -0.8634 S32: 0.6523 S33: -0.2973 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 101 B 101 REMARK 3 ORIGIN FOR THE GROUP (A): 2.0010 9.9694 23.4737 REMARK 3 T TENSOR REMARK 3 T11: 0.6291 T22: 0.4159 REMARK 3 T33: 0.6855 T12: -0.0202 REMARK 3 T13: 0.0296 T23: -0.1423 REMARK 3 L TENSOR REMARK 3 L11: 0.0173 L22: 227.1374 REMARK 3 L33: 27.2937 L12: 0.1132 REMARK 3 L13: 0.0466 L23: 78.7306 REMARK 3 S TENSOR REMARK 3 S11: -0.0883 S12: 0.0235 S13: -0.0658 REMARK 3 S21: -2.5176 S22: 0.6016 S23: -1.3293 REMARK 3 S31: -0.8936 S32: 0.2236 S33: -0.5133 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 NUMBER OF COMPONENTS GROUP : 3 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 501 A 512 REMARK 3 RESIDUE RANGE : C 201 C 202 REMARK 3 RESIDUE RANGE : B 201 B 204 REMARK 3 ORIGIN FOR THE GROUP (A): -6.4870 3.4677 47.3932 REMARK 3 T TENSOR REMARK 3 T11: 0.3938 T22: 0.0888 REMARK 3 T33: 0.1050 T12: -0.0956 REMARK 3 T13: -0.0166 T23: -0.0493 REMARK 3 L TENSOR REMARK 3 L11: 1.7053 L22: 2.1145 REMARK 3 L33: 5.5259 L12: -1.8570 REMARK 3 L13: 1.7370 L23: -2.4388 REMARK 3 S TENSOR REMARK 3 S11: 0.2834 S12: 0.0995 S13: 0.0581 REMARK 3 S21: -0.0978 S22: -0.1444 S23: -0.0631 REMARK 3 S31: -0.7515 S32: 0.5872 S33: -0.1390 REMARK 3 REMARK 3 TLS GROUP : 6 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : C 101 C 101 REMARK 3 ORIGIN FOR THE GROUP (A): -9.0140 -5.5962 8.1574 REMARK 3 T TENSOR REMARK 3 T11: 0.5328 T22: 0.4775 REMARK 3 T33: 0.3900 T12: -0.0149 REMARK 3 T13: 0.0149 T23: -0.0251 REMARK 3 L TENSOR REMARK 3 L11: 11.0437 L22: 43.5613 REMARK 3 L33: 8.2826 L12: 21.7610 REMARK 3 L13: 6.4905 L23: 11.0796 REMARK 3 S TENSOR REMARK 3 S11: 0.1655 S12: -0.1045 S13: -0.6347 REMARK 3 S21: 0.5136 S22: -0.0620 S23: -1.3843 REMARK 3 S31: -0.6017 S32: -0.2145 S33: -0.1035 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4LQ0 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 09-AUG-13. REMARK 100 THE DEPOSITION ID IS D_1000080940. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 01-JAN-12 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ALS REMARK 200 BEAMLINE : 5.0.1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9999 REMARK 200 MONOCHROMATOR : SINGLE CRYSTAL, CYLINDRICALLY REMARK 200 BENT, SI(220) REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 13839 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.680 REMARK 200 RESOLUTION RANGE LOW (A) : 44.500 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 95.3 REMARK 200 DATA REDUNDANCY : 11.30 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.09200 REMARK 200 FOR THE DATA SET : 20.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.68 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.80 REMARK 200 COMPLETENESS FOR SHELL (%) : 95.0 REMARK 200 DATA REDUNDANCY IN SHELL : 11.30 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.58600 REMARK 200 FOR SHELL : 4.200 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER MR REMARK 200 STARTING MODEL: PDB ENTRY 3QQY REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 48.88 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.41 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 30% PEG MME 550 0.1 M BIS-TRIS 50 MM REMARK 280 CALCIUM CHLORIDE, PH 6.5, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 20.27650 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 84.32400 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 35.97950 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 84.32400 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 20.27650 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 35.97950 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 9170 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 19200 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -91.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 ILE A 2 REMARK 465 ASN A 3 REMARK 465 LEU A 4 REMARK 465 LYS A 5 REMARK 465 ASN A 6 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA A 33 -50.40 -28.43 REMARK 500 ASP A 53 32.36 -92.18 REMARK 500 ASP A 76 -39.24 -138.36 REMARK 500 LYS A 92 -59.51 -123.86 REMARK 500 ASN A 142 -112.70 49.93 REMARK 500 ASN A 300 -122.26 44.34 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 402 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ALA A 21 O REMARK 620 2 GLU A 181 OE2 85.9 REMARK 620 3 HOH A 507 O 89.2 74.6 REMARK 620 4 HOH A 508 O 107.8 162.3 94.0 REMARK 620 5 DT B 14 OP1 164.2 78.8 90.9 88.0 REMARK 620 6 DT C 16 OP2 79.0 97.2 166.2 96.4 98.5 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 401 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 22 OE1 REMARK 620 2 GLY A 180 O 83.7 REMARK 620 3 HOH A 509 O 170.9 87.3 REMARK 620 4 DG B 15 OP2 95.6 79.4 84.1 REMARK 620 5 DC C 15 OP1 90.1 173.2 99.0 98.4 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 403 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 22 OE2 REMARK 620 2 GLU A 181 OE1 76.3 REMARK 620 3 DT B 14 O3' 157.7 115.5 REMARK 620 4 DG B 15 OP2 100.9 105.4 58.5 REMARK 620 5 DC C 15 O3' 72.3 144.5 99.7 96.5 REMARK 620 6 DT C 16 OP2 81.6 101.6 112.3 152.7 58.1 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A 403 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PEG B 101 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE TRS C 101 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4LOX RELATED DB: PDB DBREF 4LQ0 A 1 304 UNP E0YCK3 E0YCK3_9PEZI 1 304 DBREF 4LQ0 B 1 26 PDB 4LQ0 4LQ0 1 26 DBREF 4LQ0 C 1 26 PDB 4LQ0 4LQ0 1 26 SEQRES 1 A 304 MET ILE ASN LEU LYS ASN ASN ILE GLU TYR LEU ASN TRP SEQRES 2 A 304 TYR ILE CYS GLY LEU VAL ASP ALA GLU GLY SER PHE GLY SEQRES 3 A 304 VAL ASN VAL VAL LYS HIS ALA THR ASN LYS THR GLY TYR SEQRES 4 A 304 ALA VAL LEU THR TYR PHE GLU LEU ALA MET ASN SER LYS SEQRES 5 A 304 ASP LYS GLN LEU LEU GLU LEU ILE LYS LYS THR PHE ASP SEQRES 6 A 304 LEU GLU CYS ASN ILE TYR HIS ASN PRO SER ASP ASP THR SEQRES 7 A 304 LEU LYS PHE LYS VAL SER ASN ILE GLU GLN ILE VAL ASN SEQRES 8 A 304 LYS ILE ILE PRO PHE PHE GLU LYS TYR THR LEU PHE SER SEQRES 9 A 304 GLN LYS ARG GLY ASP PHE ILE LEU PHE CYS LYS VAL VAL SEQRES 10 A 304 GLU LEU ILE LYS ASN LYS GLU HIS LEU THR LEU ASN GLY SEQRES 11 A 304 LEU MET LYS ILE LEU SER ILE LYS ALA ALA MET ASN LEU SEQRES 12 A 304 GLY LEU SER GLU ASN LEU LYS LYS GLU PHE PRO GLY CYS SEQRES 13 A 304 LEU SER VAL LYS ARG PRO GLU PHE GLY LEU SER ASN LEU SEQRES 14 A 304 ASN LYS ARG TRP LEU ALA GLY PHE ILE GLU GLY GLU ALA SEQRES 15 A 304 CYS PHE PHE VAL SER ILE TYR ASN SER PRO LYS SER LYS SEQRES 16 A 304 LEU GLY LYS ALA VAL GLN LEU VAL PHE LYS ILE THR GLN SEQRES 17 A 304 HIS ILE ARG ASP LYS ILE LEU ILE GLU SER ILE VAL GLU SEQRES 18 A 304 LEU LEU ASN CYS GLY ARG VAL GLU VAL ARG LYS SER ASN SEQRES 19 A 304 GLU ALA CYS ASP PHE THR VAL THR SER ILE LYS GLU ILE SEQRES 20 A 304 GLU ASN TYR ILE ILE PRO PHE PHE ASN GLU TYR PRO LEU SEQRES 21 A 304 ILE GLY GLN LYS LEU LYS ASN TYR GLU ASP PHE LYS LEU SEQRES 22 A 304 ILE PHE ASP MET MET LYS THR LYS ASP HIS LEU THR GLU SEQRES 23 A 304 GLU GLY LEU SER LYS ILE ILE GLU ILE LYS ASN LYS MET SEQRES 24 A 304 ASN THR ASN ARG ILE SEQRES 1 B 26 DC DA DG DT DA DG DT DG DA DA DG DT DA SEQRES 2 B 26 DT DG DT DT DA DT DT DT DA DA DC DC DC SEQRES 1 C 26 DG DG DT DT DA DA DA DT DA DA DC DA DT SEQRES 2 C 26 DA DC DT DT DC DA DC DT DA DC DT DG DG HET CA A 401 1 HET CA A 402 1 HET CA A 403 1 HET PEG B 101 7 HET TRS C 101 8 HETNAM CA CALCIUM ION HETNAM PEG DI(HYDROXYETHYL)ETHER HETNAM TRS 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL HETSYN TRS TRIS BUFFER FORMUL 4 CA 3(CA 2+) FORMUL 7 PEG C4 H10 O3 FORMUL 8 TRS C4 H12 N O3 1+ FORMUL 9 HOH *18(H2 O) HELIX 1 1 ILE A 8 GLY A 23 1 16 HELIX 2 2 ASP A 53 PHE A 64 1 12 HELIX 3 3 ASN A 85 LYS A 92 1 8 HELIX 4 4 LYS A 92 TYR A 100 1 9 HELIX 5 5 GLN A 105 ASN A 122 1 18 HELIX 6 6 LYS A 123 LEU A 126 5 4 HELIX 7 7 THR A 127 ALA A 139 1 13 HELIX 8 8 SER A 146 PHE A 153 1 8 HELIX 9 9 ASN A 170 GLU A 181 1 12 HELIX 10 10 ASP A 212 ASN A 224 1 13 HELIX 11 11 SER A 243 TYR A 250 1 8 HELIX 12 12 TYR A 250 TYR A 258 1 9 HELIX 13 13 GLY A 262 LYS A 279 1 18 HELIX 14 14 THR A 280 LEU A 284 5 5 HELIX 15 15 THR A 285 ASN A 297 1 13 HELIX 16 16 LYS A 298 ARG A 303 5 6 SHEET 1 A 4 PHE A 25 LYS A 31 0 SHEET 2 A 4 TYR A 39 ASN A 50 -1 O ALA A 40 N VAL A 30 SHEET 3 A 4 THR A 78 VAL A 83 -1 O VAL A 83 N PHE A 45 SHEET 4 A 4 TYR A 71 HIS A 72 -1 N TYR A 71 O LYS A 80 SHEET 1 B 4 ALA A 182 ASN A 190 0 SHEET 2 B 4 LYS A 198 HIS A 209 -1 O VAL A 203 N PHE A 185 SHEET 3 B 4 ALA A 236 VAL A 241 -1 O PHE A 239 N ILE A 206 SHEET 4 B 4 ARG A 227 VAL A 230 -1 N GLU A 229 O ASP A 238 LINK O ALA A 21 CA CA A 402 1555 1555 2.32 LINK OE1 GLU A 22 CA CA A 401 1555 1555 2.34 LINK OE2 GLU A 22 CA CA A 403 1555 1555 2.39 LINK O GLY A 180 CA CA A 401 1555 1555 2.44 LINK OE2 GLU A 181 CA CA A 402 1555 1555 2.52 LINK OE1 GLU A 181 CA CA A 403 1555 1555 2.77 LINK CA CA A 401 O HOH A 509 1555 1555 2.29 LINK CA CA A 401 OP2 DG B 15 1555 1555 2.32 LINK CA CA A 401 OP1 DC C 15 1555 1555 2.11 LINK CA CA A 402 O HOH A 507 1555 1555 2.21 LINK CA CA A 402 O HOH A 508 1555 1555 2.30 LINK CA CA A 402 OP1 DT B 14 1555 1555 2.26 LINK CA CA A 402 OP2 DT C 16 1555 1555 2.17 LINK CA CA A 403 O3' DT B 14 1555 1555 2.44 LINK CA CA A 403 OP2 DG B 15 1555 1555 2.71 LINK CA CA A 403 O3' DC C 15 1555 1555 2.73 LINK CA CA A 403 OP2 DT C 16 1555 1555 2.32 SITE 1 AC1 5 GLU A 22 GLY A 180 HOH A 509 DG B 15 SITE 2 AC1 5 DC C 15 SITE 1 AC2 6 ALA A 21 GLU A 181 HOH A 507 HOH A 508 SITE 2 AC2 6 DT B 14 DT C 16 SITE 1 AC3 6 GLU A 22 GLU A 181 DT B 14 DG B 15 SITE 2 AC3 6 DC C 15 DT C 16 SITE 1 AC4 2 DT B 7 DA B 9 SITE 1 AC5 6 DA B 2 DG B 3 DG C 1 DT C 24 SITE 2 AC5 6 DG C 25 DG C 26 CRYST1 40.553 71.959 168.648 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.024659 0.000000 0.000000 0.00000 SCALE2 0.000000 0.013897 0.000000 0.00000 SCALE3 0.000000 0.000000 0.005930 0.00000