data_4LQD # _entry.id 4LQD # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.281 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code PDB 4LQD RCSB RCSB080953 WWPDB D_1000080953 # _pdbx_database_related.db_name PDB _pdbx_database_related.db_id 4LQC _pdbx_database_related.details . _pdbx_database_related.content_type unspecified # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 4LQD _pdbx_database_status.recvd_initial_deposition_date 2013-07-17 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Snyder, G.A.' 1 'Smith, P.' 2 'Jiang, J.' 3 'Xiao, T.S.' 4 # _citation.id primary _citation.title ;Crystal structures of the Toll/Interleukin-1 receptor (TIR) domains from the Brucella protein TcpB and host adaptor TIRAP reveal mechanisms of molecular mimicry. ; _citation.journal_abbrev J.Biol.Chem. _citation.journal_volume 289 _citation.page_first 669 _citation.page_last 679 _citation.year 2014 _citation.journal_id_ASTM JBCHA3 _citation.country US _citation.journal_id_ISSN 0021-9258 _citation.journal_id_CSD 0071 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 24275656 _citation.pdbx_database_id_DOI 10.1074/jbc.M113.523407 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal primary 'Snyder, G.A.' 1 primary 'Deredge, D.' 2 primary 'Waldhuber, A.' 3 primary 'Fresquez, T.' 4 primary 'Wilkins, D.Z.' 5 primary 'Smith, P.T.' 6 primary 'Durr, S.' 7 primary 'Cirl, C.' 8 primary 'Jiang, J.' 9 primary 'Jennings, W.' 10 primary 'Luchetti, T.' 11 primary 'Snyder, N.' 12 primary 'Sundberg, E.J.' 13 primary 'Wintrode, P.' 14 primary 'Miethke, T.' 15 primary 'Xiao, T.S.' 16 # _cell.entry_id 4LQD _cell.length_a 87.570 _cell.length_b 87.570 _cell.length_c 80.650 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 4LQD _symmetry.space_group_name_H-M 'P 43 21 2' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 96 _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'Toll/interleukin-1 receptor domain-containing adapter protein' 16008.291 1 ? ? 'TIRAP TIR domain (UNP residues 81-221)' ? 2 non-polymer syn GLYCEROL 92.094 1 ? ? ? ? 3 water nat water 18.015 59 ? ? ? ? # _entity_name_com.entity_id 1 _entity_name_com.name 'TIR domain-containing adapter protein, Adaptor protein Wyatt, MyD88 adapter-like protein, MyD88-2' # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer yes _entity_poly.pdbx_seq_one_letter_code ;GVDRWSKDYDVCV(CME)HSEEDLVAAQDLVSYLEGSTASLRCFLQLRDATPGGAIVSELCQALSSSHCRVLLITPGFLQ DPW(CME)KYQMLQALTEAPGAEGCTIPLLSGLSRAAYPPELRFMYYVDGRGPDGGFRQVKEAVMRYLQTLS ; _entity_poly.pdbx_seq_one_letter_code_can ;GVDRWSKDYDVCVCHSEEDLVAAQDLVSYLEGSTASLRCFLQLRDATPGGAIVSELCQALSSSHCRVLLITPGFLQDPWC KYQMLQALTEAPGAEGCTIPLLSGLSRAAYPPELRFMYYVDGRGPDGGFRQVKEAVMRYLQTLS ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 GLY n 1 2 VAL n 1 3 ASP n 1 4 ARG n 1 5 TRP n 1 6 SER n 1 7 LYS n 1 8 ASP n 1 9 TYR n 1 10 ASP n 1 11 VAL n 1 12 CYS n 1 13 VAL n 1 14 CME n 1 15 HIS n 1 16 SER n 1 17 GLU n 1 18 GLU n 1 19 ASP n 1 20 LEU n 1 21 VAL n 1 22 ALA n 1 23 ALA n 1 24 GLN n 1 25 ASP n 1 26 LEU n 1 27 VAL n 1 28 SER n 1 29 TYR n 1 30 LEU n 1 31 GLU n 1 32 GLY n 1 33 SER n 1 34 THR n 1 35 ALA n 1 36 SER n 1 37 LEU n 1 38 ARG n 1 39 CYS n 1 40 PHE n 1 41 LEU n 1 42 GLN n 1 43 LEU n 1 44 ARG n 1 45 ASP n 1 46 ALA n 1 47 THR n 1 48 PRO n 1 49 GLY n 1 50 GLY n 1 51 ALA n 1 52 ILE n 1 53 VAL n 1 54 SER n 1 55 GLU n 1 56 LEU n 1 57 CYS n 1 58 GLN n 1 59 ALA n 1 60 LEU n 1 61 SER n 1 62 SER n 1 63 SER n 1 64 HIS n 1 65 CYS n 1 66 ARG n 1 67 VAL n 1 68 LEU n 1 69 LEU n 1 70 ILE n 1 71 THR n 1 72 PRO n 1 73 GLY n 1 74 PHE n 1 75 LEU n 1 76 GLN n 1 77 ASP n 1 78 PRO n 1 79 TRP n 1 80 CME n 1 81 LYS n 1 82 TYR n 1 83 GLN n 1 84 MET n 1 85 LEU n 1 86 GLN n 1 87 ALA n 1 88 LEU n 1 89 THR n 1 90 GLU n 1 91 ALA n 1 92 PRO n 1 93 GLY n 1 94 ALA n 1 95 GLU n 1 96 GLY n 1 97 CYS n 1 98 THR n 1 99 ILE n 1 100 PRO n 1 101 LEU n 1 102 LEU n 1 103 SER n 1 104 GLY n 1 105 LEU n 1 106 SER n 1 107 ARG n 1 108 ALA n 1 109 ALA n 1 110 TYR n 1 111 PRO n 1 112 PRO n 1 113 GLU n 1 114 LEU n 1 115 ARG n 1 116 PHE n 1 117 MET n 1 118 TYR n 1 119 TYR n 1 120 VAL n 1 121 ASP n 1 122 GLY n 1 123 ARG n 1 124 GLY n 1 125 PRO n 1 126 ASP n 1 127 GLY n 1 128 GLY n 1 129 PHE n 1 130 ARG n 1 131 GLN n 1 132 VAL n 1 133 LYS n 1 134 GLU n 1 135 ALA n 1 136 VAL n 1 137 MET n 1 138 ARG n 1 139 TYR n 1 140 LEU n 1 141 GLN n 1 142 THR n 1 143 LEU n 1 144 SER n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name human _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene 'TIRAP, MAL' _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Homo sapiens' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 9606 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain ? _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type ? _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name ? _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code TIRAP_HUMAN _struct_ref.pdbx_db_accession P58753 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;RWSKDYDVCVCHSEEDLVAAQDLVSYLEGSTASLRCFLQLRDATPGGAIVSELCQALSSSHCRVLLITPGFLQDPWCKYQ MLQALTEAPGAEGCTIPLLSGLSRAAYPPELRFMYYVDGRGPDGGFRQVKEAVMRYLQTLS ; _struct_ref.pdbx_align_begin 81 _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 4LQD _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 4 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 144 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession P58753 _struct_ref_seq.db_align_beg 81 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 221 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 81 _struct_ref_seq.pdbx_auth_seq_align_end 221 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 4LQD GLY A 1 ? UNP P58753 ? ? 'EXPRESSION TAG' 78 1 1 4LQD VAL A 2 ? UNP P58753 ? ? 'EXPRESSION TAG' 79 2 1 4LQD ASP A 3 ? UNP P58753 ? ? 'EXPRESSION TAG' 80 3 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CME 'L-peptide linking' n 'S,S-(2-HYDROXYETHYL)THIOCYSTEINE' ? 'C5 H11 N O3 S2' 197.276 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 GOL non-polymer . GLYCEROL 'GLYCERIN; PROPANE-1,2,3-TRIOL' 'C3 H8 O3' 92.094 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.entry_id 4LQD _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 4.83 _exptl_crystal.density_percent_sol 74.53 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.temp 298 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 9.0 _exptl_crystal_grow.pdbx_details '5%MPD,100mM Ches pH 9.0, 100mM NaCl and 24% glycerol cryo, VAPOR DIFFUSION, HANGING DROP, temperature 298K' _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'MARMOSAIC 300 mm CCD' _diffrn_detector.pdbx_collection_date 2010-03-25 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 1.033 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'APS BEAMLINE 23-ID-D' _diffrn_source.pdbx_synchrotron_site APS _diffrn_source.pdbx_synchrotron_beamline 23-ID-D _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list 1.033 # _reflns.entry_id 4LQD _reflns.observed_criterion_sigma_I 3.0 _reflns.observed_criterion_sigma_F ? _reflns.d_resolution_low 10.96 _reflns.d_resolution_high 2.45 _reflns.number_obs 12002 _reflns.number_all ? _reflns.percent_possible_obs 99.8 _reflns.pdbx_Rmerge_I_obs ? _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI ? _reflns.B_iso_Wilson_estimate ? _reflns.pdbx_redundancy ? _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_ordinal 1 _reflns.pdbx_diffrn_id 1 # _refine.entry_id 4LQD _refine.ls_number_reflns_obs 11998 _refine.ls_number_reflns_all 12002 _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 1.34 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 10.96 _refine.ls_d_res_high 2.451 _refine.ls_percent_reflns_obs 99.83 _refine.ls_R_factor_obs 0.2079 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.2073 _refine.ls_R_factor_R_free 0.2182 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 4.77 _refine.ls_number_reflns_R_free 572 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.B_iso_mean ? _refine.aniso_B[1][1] ? _refine.aniso_B[2][2] ? _refine.aniso_B[3][3] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][3] ? _refine.solvent_model_details 'FLAT BULK SOLVENT MODEL' _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_solvent_vdw_probe_radii 1.11 _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii 0.90 _refine.pdbx_ls_cross_valid_method ? _refine.details ? _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct SAD _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values ML _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details random _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML 0.28 _refine.pdbx_overall_phase_error 21.54 _refine.overall_SU_B ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.ls_redundancy_reflns_obs ? _refine.B_iso_min ? _refine.B_iso_max ? _refine.overall_SU_R_free ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_diffrn_id 1 _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 980 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 6 _refine_hist.number_atoms_solvent 59 _refine_hist.number_atoms_total 1045 _refine_hist.d_res_high 2.451 _refine_hist.d_res_low 10.96 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_restraint_function _refine_ls_restr.pdbx_refine_id f_bond_d 0.006 ? ? 1012 ? 'X-RAY DIFFRACTION' f_angle_d 0.978 ? ? 1366 ? 'X-RAY DIFFRACTION' f_dihedral_angle_d 13.426 ? ? 375 ? 'X-RAY DIFFRACTION' f_chiral_restr 0.034 ? ? 148 ? 'X-RAY DIFFRACTION' f_plane_restr 0.007 ? ? 175 ? 'X-RAY DIFFRACTION' # loop_ _refine_ls_shell.pdbx_total_number_of_bins_used _refine_ls_shell.d_res_high _refine_ls_shell.d_res_low _refine_ls_shell.number_reflns_R_work _refine_ls_shell.R_factor_R_work _refine_ls_shell.percent_reflns_obs _refine_ls_shell.R_factor_R_free _refine_ls_shell.R_factor_R_free_error _refine_ls_shell.percent_reflns_R_free _refine_ls_shell.number_reflns_R_free _refine_ls_shell.number_reflns_all _refine_ls_shell.R_factor_all _refine_ls_shell.number_reflns_obs _refine_ls_shell.redundancy_reflns_obs _refine_ls_shell.pdbx_refine_id . 2.4505 2.6971 2786 0.2687 100.00 0.2954 . . 141 . . . . 'X-RAY DIFFRACTION' . 2.6971 3.0872 2803 0.2467 100.00 0.2357 . . 141 . . . . 'X-RAY DIFFRACTION' . 3.0872 3.8890 2839 0.2038 100.00 0.2405 . . 148 . . . . 'X-RAY DIFFRACTION' . 3.8890 39.1675 2998 0.1829 100.00 0.1796 . . 142 . . . . 'X-RAY DIFFRACTION' # _struct.entry_id 4LQD _struct.title ;The crystal structures of the Brucella protein TcpB and the TLR adaptor protein TIRAP show structural differences in microbial TIR mimicry ; _struct.pdbx_descriptor 'Toll/interleukin-1 receptor domain-containing adapter protein' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 4LQD _struct_keywords.pdbx_keywords 'IMMUNE SYSTEM' _struct_keywords.text 'Flavodoxin Fold, Toll-like receptor Signaling Adaptor, MyD88, IMMUNE SYSTEM' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? # _struct_biol.id 1 _struct_biol.details ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 ASP A 3 ? LYS A 7 ? ASP A 80 LYS A 84 5 ? 5 HELX_P HELX_P2 2 SER A 16 ? GLU A 18 ? SER A 93 GLU A 95 5 ? 3 HELX_P HELX_P3 3 ASP A 19 ? GLY A 32 ? ASP A 96 GLY A 109 1 ? 14 HELX_P HELX_P4 4 THR A 71 ? ASP A 77 ? THR A 148 ASP A 154 1 ? 7 HELX_P HELX_P5 5 ASP A 77 ? LEU A 88 ? ASP A 154 LEU A 165 1 ? 12 HELX_P HELX_P6 6 SER A 106 ? TYR A 110 ? SER A 183 TYR A 187 5 ? 5 HELX_P HELX_P7 7 PRO A 111 ? MET A 117 ? PRO A 188 MET A 194 5 ? 7 HELX_P HELX_P8 8 GLY A 124 ? GLY A 127 ? GLY A 201 GLY A 204 5 ? 4 HELX_P HELX_P9 9 GLY A 128 ? THR A 142 ? GLY A 205 THR A 219 1 ? 15 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf1 disulf ? ? A CYS 12 SG ? ? ? 1_555 A CYS 57 SG ? ? A CYS 89 A CYS 134 1_555 ? ? ? ? ? ? ? 2.051 ? disulf2 disulf ? ? A CYS 65 SG ? ? ? 1_555 A CYS 97 SG ? ? A CYS 142 A CYS 174 1_555 ? ? ? ? ? ? ? 2.052 ? covale1 covale ? ? A VAL 13 C ? ? ? 1_555 A CME 14 N ? ? A VAL 90 A CME 91 1_555 ? ? ? ? ? ? ? 1.333 ? covale2 covale ? ? A CME 14 C ? ? ? 1_555 A HIS 15 N ? ? A CME 91 A HIS 92 1_555 ? ? ? ? ? ? ? 1.331 ? covale3 covale ? ? A TRP 79 C ? ? ? 1_555 A CME 80 N ? ? A TRP 156 A CME 157 1_555 ? ? ? ? ? ? ? 1.333 ? covale4 covale ? ? A CME 80 C ? ? ? 1_555 A LYS 81 N ? ? A CME 157 A LYS 158 1_555 ? ? ? ? ? ? ? 1.333 ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference disulf ? ? covale ? ? # _struct_sheet.id A _struct_sheet.type ? _struct_sheet.number_strands 5 _struct_sheet.details ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? parallel A 2 3 ? parallel A 3 4 ? parallel A 4 5 ? parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 SER A 54 ? LEU A 56 ? SER A 131 LEU A 133 A 2 TYR A 9 ? CME A 14 ? TYR A 86 CME A 91 A 3 SER A 63 ? ILE A 70 ? SER A 140 ILE A 147 A 4 THR A 98 ? LEU A 102 ? THR A 175 LEU A 179 A 5 VAL A 120 ? ASP A 121 ? VAL A 197 ASP A 198 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 O GLU A 55 ? O GLU A 132 N VAL A 13 ? N VAL A 90 A 2 3 N CME A 14 ? N CME A 91 O VAL A 67 ? O VAL A 144 A 3 4 N LEU A 68 ? N LEU A 145 O LEU A 101 ? O LEU A 178 A 4 5 N PRO A 100 ? N PRO A 177 O VAL A 120 ? O VAL A 197 # _struct_site.id AC1 _struct_site.pdbx_evidence_code Software _struct_site.pdbx_auth_asym_id ? _struct_site.pdbx_auth_comp_id ? _struct_site.pdbx_auth_seq_id ? _struct_site.pdbx_auth_ins_code ? _struct_site.pdbx_num_residues 4 _struct_site.details 'BINDING SITE FOR RESIDUE GOL A 301' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 4 ARG A 4 ? ARG A 81 . ? 1_555 ? 2 AC1 4 TRP A 5 ? TRP A 82 . ? 1_555 ? 3 AC1 4 ARG A 115 ? ARG A 192 . ? 4_545 ? 4 AC1 4 SER A 144 ? SER A 221 . ? 1_555 ? # _database_PDB_matrix.entry_id 4LQD _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 4LQD _atom_sites.fract_transf_matrix[1][1] 0.011419 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.011419 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.012399 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 GLY 1 78 78 GLY GLY A . n A 1 2 VAL 2 79 79 VAL VAL A . n A 1 3 ASP 3 80 80 ASP ASP A . n A 1 4 ARG 4 81 81 ARG ARG A . n A 1 5 TRP 5 82 82 TRP TRP A . n A 1 6 SER 6 83 83 SER SER A . n A 1 7 LYS 7 84 84 LYS LYS A . n A 1 8 ASP 8 85 85 ASP ASP A . n A 1 9 TYR 9 86 86 TYR TYR A . n A 1 10 ASP 10 87 87 ASP ASP A . n A 1 11 VAL 11 88 88 VAL VAL A . n A 1 12 CYS 12 89 89 CYS CYS A . n A 1 13 VAL 13 90 90 VAL VAL A . n A 1 14 CME 14 91 91 CME CME A . n A 1 15 HIS 15 92 92 HIS HIS A . n A 1 16 SER 16 93 93 SER SER A . n A 1 17 GLU 17 94 94 GLU GLU A . n A 1 18 GLU 18 95 95 GLU GLU A . n A 1 19 ASP 19 96 96 ASP ASP A . n A 1 20 LEU 20 97 97 LEU LEU A . n A 1 21 VAL 21 98 98 VAL VAL A . n A 1 22 ALA 22 99 99 ALA ALA A . n A 1 23 ALA 23 100 100 ALA ALA A . n A 1 24 GLN 24 101 101 GLN GLN A . n A 1 25 ASP 25 102 102 ASP ASP A . n A 1 26 LEU 26 103 103 LEU LEU A . n A 1 27 VAL 27 104 104 VAL VAL A . n A 1 28 SER 28 105 105 SER SER A . n A 1 29 TYR 29 106 106 TYR TYR A . n A 1 30 LEU 30 107 107 LEU LEU A . n A 1 31 GLU 31 108 108 GLU GLU A . n A 1 32 GLY 32 109 109 GLY GLY A . n A 1 33 SER 33 110 ? ? ? A . n A 1 34 THR 34 111 ? ? ? A . n A 1 35 ALA 35 112 ? ? ? A . n A 1 36 SER 36 113 ? ? ? A . n A 1 37 LEU 37 114 ? ? ? A . n A 1 38 ARG 38 115 ? ? ? A . n A 1 39 CYS 39 116 ? ? ? A . n A 1 40 PHE 40 117 ? ? ? A . n A 1 41 LEU 41 118 ? ? ? A . n A 1 42 GLN 42 119 ? ? ? A . n A 1 43 LEU 43 120 ? ? ? A . n A 1 44 ARG 44 121 ? ? ? A . n A 1 45 ASP 45 122 ? ? ? A . n A 1 46 ALA 46 123 ? ? ? A . n A 1 47 THR 47 124 ? ? ? A . n A 1 48 PRO 48 125 125 PRO PRO A . n A 1 49 GLY 49 126 126 GLY GLY A . n A 1 50 GLY 50 127 127 GLY GLY A . n A 1 51 ALA 51 128 128 ALA ALA A . n A 1 52 ILE 52 129 129 ILE ILE A . n A 1 53 VAL 53 130 130 VAL VAL A . n A 1 54 SER 54 131 131 SER SER A . n A 1 55 GLU 55 132 132 GLU GLU A . n A 1 56 LEU 56 133 133 LEU LEU A . n A 1 57 CYS 57 134 134 CYS CYS A . n A 1 58 GLN 58 135 135 GLN GLN A . n A 1 59 ALA 59 136 136 ALA ALA A . n A 1 60 LEU 60 137 137 LEU LEU A . n A 1 61 SER 61 138 138 SER SER A . n A 1 62 SER 62 139 139 SER SER A . n A 1 63 SER 63 140 140 SER SER A . n A 1 64 HIS 64 141 141 HIS HIS A . n A 1 65 CYS 65 142 142 CYS CYS A . n A 1 66 ARG 66 143 143 ARG ARG A . n A 1 67 VAL 67 144 144 VAL VAL A . n A 1 68 LEU 68 145 145 LEU LEU A . n A 1 69 LEU 69 146 146 LEU LEU A . n A 1 70 ILE 70 147 147 ILE ILE A . n A 1 71 THR 71 148 148 THR THR A . n A 1 72 PRO 72 149 149 PRO PRO A . n A 1 73 GLY 73 150 150 GLY GLY A . n A 1 74 PHE 74 151 151 PHE PHE A . n A 1 75 LEU 75 152 152 LEU LEU A . n A 1 76 GLN 76 153 153 GLN GLN A . n A 1 77 ASP 77 154 154 ASP ASP A . n A 1 78 PRO 78 155 155 PRO PRO A . n A 1 79 TRP 79 156 156 TRP TRP A . n A 1 80 CME 80 157 157 CME CME A . n A 1 81 LYS 81 158 158 LYS LYS A . n A 1 82 TYR 82 159 159 TYR TYR A . n A 1 83 GLN 83 160 160 GLN GLN A . n A 1 84 MET 84 161 161 MET MET A . n A 1 85 LEU 85 162 162 LEU LEU A . n A 1 86 GLN 86 163 163 GLN GLN A . n A 1 87 ALA 87 164 164 ALA ALA A . n A 1 88 LEU 88 165 165 LEU LEU A . n A 1 89 THR 89 166 166 THR THR A . n A 1 90 GLU 90 167 167 GLU GLU A . n A 1 91 ALA 91 168 ? ? ? A . n A 1 92 PRO 92 169 ? ? ? A . n A 1 93 GLY 93 170 ? ? ? A . n A 1 94 ALA 94 171 ? ? ? A . n A 1 95 GLU 95 172 172 GLU GLU A . n A 1 96 GLY 96 173 173 GLY GLY A . n A 1 97 CYS 97 174 174 CYS CYS A . n A 1 98 THR 98 175 175 THR THR A . n A 1 99 ILE 99 176 176 ILE ILE A . n A 1 100 PRO 100 177 177 PRO PRO A . n A 1 101 LEU 101 178 178 LEU LEU A . n A 1 102 LEU 102 179 179 LEU LEU A . n A 1 103 SER 103 180 180 SER SER A . n A 1 104 GLY 104 181 181 GLY GLY A . n A 1 105 LEU 105 182 182 LEU LEU A . n A 1 106 SER 106 183 183 SER SER A . n A 1 107 ARG 107 184 184 ARG ARG A . n A 1 108 ALA 108 185 185 ALA ALA A . n A 1 109 ALA 109 186 186 ALA ALA A . n A 1 110 TYR 110 187 187 TYR TYR A . n A 1 111 PRO 111 188 188 PRO PRO A . n A 1 112 PRO 112 189 189 PRO PRO A . n A 1 113 GLU 113 190 190 GLU GLU A . n A 1 114 LEU 114 191 191 LEU LEU A . n A 1 115 ARG 115 192 192 ARG ARG A . n A 1 116 PHE 116 193 193 PHE PHE A . n A 1 117 MET 117 194 194 MET MET A . n A 1 118 TYR 118 195 195 TYR TYR A . n A 1 119 TYR 119 196 196 TYR TYR A . n A 1 120 VAL 120 197 197 VAL VAL A . n A 1 121 ASP 121 198 198 ASP ASP A . n A 1 122 GLY 122 199 199 GLY GLY A . n A 1 123 ARG 123 200 200 ARG ARG A . n A 1 124 GLY 124 201 201 GLY GLY A . n A 1 125 PRO 125 202 202 PRO PRO A . n A 1 126 ASP 126 203 203 ASP ASP A . n A 1 127 GLY 127 204 204 GLY GLY A . n A 1 128 GLY 128 205 205 GLY GLY A . n A 1 129 PHE 129 206 206 PHE PHE A . n A 1 130 ARG 130 207 207 ARG ARG A . n A 1 131 GLN 131 208 208 GLN GLN A . n A 1 132 VAL 132 209 209 VAL VAL A . n A 1 133 LYS 133 210 210 LYS LYS A . n A 1 134 GLU 134 211 211 GLU GLU A . n A 1 135 ALA 135 212 212 ALA ALA A . n A 1 136 VAL 136 213 213 VAL VAL A . n A 1 137 MET 137 214 214 MET MET A . n A 1 138 ARG 138 215 215 ARG ARG A . n A 1 139 TYR 139 216 216 TYR TYR A . n A 1 140 LEU 140 217 217 LEU LEU A . n A 1 141 GLN 141 218 218 GLN GLN A . n A 1 142 THR 142 219 219 THR THR A . n A 1 143 LEU 143 220 220 LEU LEU A . n A 1 144 SER 144 221 221 SER SER A . n # loop_ _pdbx_struct_mod_residue.id _pdbx_struct_mod_residue.label_asym_id _pdbx_struct_mod_residue.label_comp_id _pdbx_struct_mod_residue.label_seq_id _pdbx_struct_mod_residue.auth_asym_id _pdbx_struct_mod_residue.auth_comp_id _pdbx_struct_mod_residue.auth_seq_id _pdbx_struct_mod_residue.PDB_ins_code _pdbx_struct_mod_residue.parent_comp_id _pdbx_struct_mod_residue.details 1 A CME 14 A CME 91 ? CYS 'S,S-(2-HYDROXYETHYL)THIOCYSTEINE' 2 A CME 80 A CME 157 ? CYS 'S,S-(2-HYDROXYETHYL)THIOCYSTEINE' # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 _pdbx_struct_assembly_gen.asym_id_list A,B,C # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 1770 ? 1 MORE -15 ? 1 'SSA (A^2)' 13420 ? # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 2 'crystal symmetry operation' 7_555 y,x,-z 0.0000000000 1.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2013-12-04 2 'Structure model' 1 1 2014-04-09 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? # _pdbx_audit_revision_group.ordinal 1 _pdbx_audit_revision_group.revision_ordinal 2 _pdbx_audit_revision_group.data_content_type 'Structure model' _pdbx_audit_revision_group.group 'Database references' # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal HKL-2000 'data collection' . ? 1 SHELXS phasing . ? 2 PHENIX refinement '(phenix.refine: 1.8.2_1309)' ? 3 HKL-2000 'data reduction' . ? 4 HKL-2000 'data scaling' . ? 5 # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 Y 0 A GLN 208 ? N B A GLN 131 N 2 1 Y 0 A GLN 208 ? C B A GLN 131 C 3 1 Y 0 A GLN 208 ? O B A GLN 131 O # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A SER 110 ? A SER 33 2 1 Y 1 A THR 111 ? A THR 34 3 1 Y 1 A ALA 112 ? A ALA 35 4 1 Y 1 A SER 113 ? A SER 36 5 1 Y 1 A LEU 114 ? A LEU 37 6 1 Y 1 A ARG 115 ? A ARG 38 7 1 Y 1 A CYS 116 ? A CYS 39 8 1 Y 1 A PHE 117 ? A PHE 40 9 1 Y 1 A LEU 118 ? A LEU 41 10 1 Y 1 A GLN 119 ? A GLN 42 11 1 Y 1 A LEU 120 ? A LEU 43 12 1 Y 1 A ARG 121 ? A ARG 44 13 1 Y 1 A ASP 122 ? A ASP 45 14 1 Y 1 A ALA 123 ? A ALA 46 15 1 Y 1 A THR 124 ? A THR 47 16 1 Y 1 A ALA 168 ? A ALA 91 17 1 Y 1 A PRO 169 ? A PRO 92 18 1 Y 1 A GLY 170 ? A GLY 93 19 1 Y 1 A ALA 171 ? A ALA 94 # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 GLYCEROL GOL 3 water HOH # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 GOL 1 301 1 GOL GOL A . C 3 HOH 1 401 1 HOH HOH A . C 3 HOH 2 402 2 HOH HOH A . C 3 HOH 3 403 3 HOH HOH A . C 3 HOH 4 404 4 HOH HOH A . C 3 HOH 5 405 5 HOH HOH A . C 3 HOH 6 406 6 HOH HOH A . C 3 HOH 7 407 7 HOH HOH A . C 3 HOH 8 408 8 HOH HOH A . C 3 HOH 9 409 9 HOH HOH A . C 3 HOH 10 410 10 HOH HOH A . C 3 HOH 11 411 11 HOH HOH A . C 3 HOH 12 412 12 HOH HOH A . C 3 HOH 13 413 13 HOH HOH A . C 3 HOH 14 414 14 HOH HOH A . C 3 HOH 15 415 15 HOH HOH A . C 3 HOH 16 416 16 HOH HOH A . C 3 HOH 17 417 17 HOH HOH A . C 3 HOH 18 418 18 HOH HOH A . C 3 HOH 19 419 19 HOH HOH A . C 3 HOH 20 420 20 HOH HOH A . C 3 HOH 21 421 21 HOH HOH A . C 3 HOH 22 422 22 HOH HOH A . C 3 HOH 23 423 23 HOH HOH A . C 3 HOH 24 424 24 HOH HOH A . C 3 HOH 25 425 25 HOH HOH A . C 3 HOH 26 426 26 HOH HOH A . C 3 HOH 27 427 27 HOH HOH A . C 3 HOH 28 428 28 HOH HOH A . C 3 HOH 29 429 29 HOH HOH A . C 3 HOH 30 430 30 HOH HOH A . C 3 HOH 31 431 31 HOH HOH A . C 3 HOH 32 432 32 HOH HOH A . C 3 HOH 33 433 33 HOH HOH A . C 3 HOH 34 434 34 HOH HOH A . C 3 HOH 35 435 35 HOH HOH A . C 3 HOH 36 436 36 HOH HOH A . C 3 HOH 37 437 37 HOH HOH A . C 3 HOH 38 438 38 HOH HOH A . C 3 HOH 39 439 39 HOH HOH A . C 3 HOH 40 440 40 HOH HOH A . C 3 HOH 41 441 41 HOH HOH A . C 3 HOH 42 442 42 HOH HOH A . C 3 HOH 43 443 43 HOH HOH A . C 3 HOH 44 444 44 HOH HOH A . C 3 HOH 45 445 45 HOH HOH A . C 3 HOH 46 446 46 HOH HOH A . C 3 HOH 47 447 47 HOH HOH A . C 3 HOH 48 448 48 HOH HOH A . C 3 HOH 49 449 49 HOH HOH A . C 3 HOH 50 450 50 HOH HOH A . C 3 HOH 51 451 51 HOH HOH A . C 3 HOH 52 452 52 HOH HOH A . C 3 HOH 53 453 53 HOH HOH A . C 3 HOH 54 454 54 HOH HOH A . C 3 HOH 55 455 55 HOH HOH A . C 3 HOH 56 456 56 HOH HOH A . C 3 HOH 57 457 57 HOH HOH A . C 3 HOH 58 458 58 HOH HOH A . C 3 HOH 59 459 59 HOH HOH A . #