HEADER HYDROLASE 20-JUL-13 4LRQ TITLE CRYSTAL STRUCTURE OF A LOW MOLECULAR WEIGHT PHOSPHOTYROSINE TITLE 2 PHOSPHATASE FROM VIBRIO CHOLERAEO395 COMPND MOL_ID: 1; COMPND 2 MOLECULE: PHOSPHOTYROSINE PROTEIN PHOSPHATASE; COMPND 3 CHAIN: A, B, C, D; COMPND 4 EC: 3.1.3.48; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: VIBRIO CHOLERAE; SOURCE 3 ORGANISM_TAXID: 345073; SOURCE 4 STRAIN: ATCC 39541 / OGAWA 395 / O395; SOURCE 5 GENE: VC0395_A0559, VC395_1055; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21-DE3; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET28A+ KEYWDS HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR S.NATH,R.BANERJEE,U.SEN REVDAT 3 20-MAR-24 4LRQ 1 REMARK REVDAT 2 17-JUN-15 4LRQ 1 JRNL REVDAT 1 02-JUL-14 4LRQ 0 JRNL AUTH S.NATH,R.BANERJEE,U.SEN JRNL TITL ATOMIC RESOLUTION CRYSTAL STRUCTURE OF VCLMWPTP-1 FROM JRNL TITL 2 VIBRIO CHOLERAE O395: INSIGHTS INTO A NOVEL MODE OF JRNL TITL 3 DIMERIZATION IN THE LOW MOLECULAR WEIGHT PROTEIN TYROSINE JRNL TITL 4 PHOSPHATASE FAMILY. JRNL REF BIOCHEM.BIOPHYS.RES.COMMUN. V. 450 390 2014 JRNL REFN ISSN 0006-291X JRNL PMID 24909685 JRNL DOI 10.1016/J.BBRC.2014.05.129 REMARK 2 REMARK 2 RESOLUTION. 1.45 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.7.0029 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.45 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 23.41 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 98.3 REMARK 3 NUMBER OF REFLECTIONS : 104633 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.152 REMARK 3 R VALUE (WORKING SET) : 0.152 REMARK 3 FREE R VALUE : 0.161 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 5518 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.45 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.49 REMARK 3 REFLECTION IN BIN (WORKING SET) : 7459 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 95.15 REMARK 3 BIN R VALUE (WORKING SET) : 0.3990 REMARK 3 BIN FREE R VALUE SET COUNT : 432 REMARK 3 BIN FREE R VALUE : 0.4460 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4645 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 92 REMARK 3 SOLVENT ATOMS : 392 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 14.06 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.014 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.011 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.022 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 1.214 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.970 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.964 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 4820 ; 0.004 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 4602 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 6496 ; 0.959 ; 1.988 REMARK 3 BOND ANGLES OTHERS (DEGREES): 10633 ; 0.939 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 593 ; 4.417 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 227 ;32.818 ;24.537 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 850 ;11.925 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 32 ;14.827 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 703 ; 0.099 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 5397 ; 0.003 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 1051 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): 4820 ; 2.902 ; 3.000 REMARK 3 SPHERICITY; FREE ATOMS (A**2): 121 ; 3.556 ; 5.000 REMARK 3 SPHERICITY; BONDED ATOMS (A**2): 5014 ; 5.020 ; 5.000 REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TWIN DETAILS REMARK 3 NUMBER OF TWIN DOMAINS : 4 REMARK 3 TWIN DOMAIN : 1 REMARK 3 TWIN OPERATOR : H, K, L REMARK 3 TWIN FRACTION : 0.284 REMARK 3 TWIN DOMAIN : 2 REMARK 3 TWIN OPERATOR : -K, -H, -L REMARK 3 TWIN FRACTION : 0.210 REMARK 3 TWIN DOMAIN : 3 REMARK 3 TWIN OPERATOR : K, H, -L REMARK 3 TWIN FRACTION : 0.216 REMARK 3 TWIN DOMAIN : 4 REMARK 3 TWIN OPERATOR : -H,-K,L REMARK 3 TWIN FRACTION : 0.290 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 2 A 149 REMARK 3 ORIGIN FOR THE GROUP (A): -10.5685 -21.3912 -19.0189 REMARK 3 T TENSOR REMARK 3 T11: 0.0259 T22: 0.0237 REMARK 3 T33: 0.0375 T12: 0.0098 REMARK 3 T13: 0.0023 T23: 0.0066 REMARK 3 L TENSOR REMARK 3 L11: 0.7000 L22: 1.5024 REMARK 3 L33: 1.4318 L12: 0.0293 REMARK 3 L13: 0.0448 L23: 0.1692 REMARK 3 S TENSOR REMARK 3 S11: -0.0042 S12: 0.0020 S13: 0.0451 REMARK 3 S21: -0.0249 S22: 0.0168 S23: 0.0432 REMARK 3 S31: -0.0130 S32: -0.0419 S33: -0.0126 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 2 B 150 REMARK 3 ORIGIN FOR THE GROUP (A): -30.5559 5.4556 -7.0247 REMARK 3 T TENSOR REMARK 3 T11: 0.0031 T22: 0.0224 REMARK 3 T33: 0.0263 T12: -0.0059 REMARK 3 T13: -0.0037 T23: 0.0073 REMARK 3 L TENSOR REMARK 3 L11: 1.1383 L22: 1.0518 REMARK 3 L33: 1.2884 L12: -0.4379 REMARK 3 L13: -0.1640 L23: 0.3087 REMARK 3 S TENSOR REMARK 3 S11: 0.0224 S12: 0.0281 S13: 0.0009 REMARK 3 S21: -0.0335 S22: -0.0110 S23: 0.0579 REMARK 3 S31: 0.0005 S32: -0.0462 S33: -0.0114 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : C 1 C 149 REMARK 3 ORIGIN FOR THE GROUP (A): -14.8796 -43.4462 3.8284 REMARK 3 T TENSOR REMARK 3 T11: 0.0447 T22: 0.0233 REMARK 3 T33: 0.0267 T12: -0.0139 REMARK 3 T13: 0.0079 T23: -0.0010 REMARK 3 L TENSOR REMARK 3 L11: 1.0211 L22: 1.7176 REMARK 3 L33: 1.2745 L12: 0.5227 REMARK 3 L13: 0.0285 L23: -0.1794 REMARK 3 S TENSOR REMARK 3 S11: 0.0436 S12: -0.1129 S13: 0.0156 REMARK 3 S21: 0.2374 S22: -0.0507 S23: 0.0750 REMARK 3 S31: -0.0511 S32: -0.0224 S33: 0.0071 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : D 1 D 148 REMARK 3 ORIGIN FOR THE GROUP (A): -13.5927 -9.3678 16.0302 REMARK 3 T TENSOR REMARK 3 T11: 0.0465 T22: 0.0210 REMARK 3 T33: 0.0336 T12: 0.0074 REMARK 3 T13: 0.0030 T23: 0.0100 REMARK 3 L TENSOR REMARK 3 L11: 1.3623 L22: 1.5800 REMARK 3 L33: 1.4468 L12: -0.8098 REMARK 3 L13: 0.1119 L23: 0.1717 REMARK 3 S TENSOR REMARK 3 S11: -0.0841 S12: -0.1644 S13: -0.0466 REMARK 3 S21: 0.1835 S22: 0.0727 S23: 0.0280 REMARK 3 S31: -0.0121 S32: -0.0144 S33: 0.0115 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4LRQ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 30-JUL-13. REMARK 100 THE DEPOSITION ID IS D_1000081002. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 07-DEC-11 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : ENRAF-NONIUS FR591 REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418 REMARK 200 MONOCHROMATOR : NI FILTER REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : MAR SCANNER 345 MM PLATE REMARK 200 INTENSITY-INTEGRATION SOFTWARE : IMOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 110187 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.450 REMARK 200 RESOLUTION RANGE LOW (A) : 23.890 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.3 REMARK 200 DATA REDUNDANCY : 1.800 REMARK 200 R MERGE (I) : 0.05700 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.45 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.49 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.3 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 7.800 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER MR REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 47.78 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.36 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 2.4M AMMONIUM SULFATE, 0.1M CITRIC REMARK 280 ACID PH 5.0, 2% GLYCEROL, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 31 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 24.61667 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 49.23333 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2840 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 14110 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -55.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2930 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 14030 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -58.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 LYS A 150 REMARK 465 GLN A 151 REMARK 465 GLN A 152 REMARK 465 GLY A 153 REMARK 465 GLN A 154 REMARK 465 HIS A 155 REMARK 465 GLN B 151 REMARK 465 GLN B 152 REMARK 465 GLY B 153 REMARK 465 GLN B 154 REMARK 465 HIS B 155 REMARK 465 LYS C 150 REMARK 465 GLN C 151 REMARK 465 GLN C 152 REMARK 465 GLY C 153 REMARK 465 GLN C 154 REMARK 465 HIS C 155 REMARK 465 LEU D 149 REMARK 465 LYS D 150 REMARK 465 GLN D 151 REMARK 465 GLN D 152 REMARK 465 GLY D 153 REMARK 465 GLN D 154 REMARK 465 HIS D 155 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLN C 2 CG CD OE1 NE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 NZ LYS D 30 O HOH B 377 2555 2.00 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 CYS A 8 -161.01 -120.08 REMARK 500 GLN A 45 119.30 -33.56 REMARK 500 CYS B 8 -161.49 -123.68 REMARK 500 ASP B 114 30.60 -84.86 REMARK 500 CYS C 8 -163.65 -124.34 REMARK 500 GLN C 45 131.08 -39.73 REMARK 500 ASP C 114 4.40 -64.98 REMARK 500 LYS C 148 -4.82 -58.34 REMARK 500 CYS D 8 -162.73 -123.52 REMARK 500 GLN D 45 119.72 -33.09 REMARK 500 HIS D 112 33.17 -93.47 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MPO A 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 202 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 203 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MPO B 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 B 202 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 B 203 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MPO C 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 C 202 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 C 203 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MPO D 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 D 202 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 D 203 DBREF 4LRQ A 1 155 UNP A5F2Q3 A5F2Q3_VIBC3 1 155 DBREF 4LRQ B 1 155 UNP A5F2Q3 A5F2Q3_VIBC3 1 155 DBREF 4LRQ C 1 155 UNP A5F2Q3 A5F2Q3_VIBC3 1 155 DBREF 4LRQ D 1 155 UNP A5F2Q3 A5F2Q3_VIBC3 1 155 SEQRES 1 A 155 MET GLN LYS VAL LEU VAL VAL CYS MET GLY ASN ILE CYS SEQRES 2 A 155 ARG SER PRO THR ALA GLU ALA VAL LEU ARG ALA LYS ALA SEQRES 3 A 155 ALA GLN LEU LYS VAL ASP VAL GLU VAL ASP SER ALA GLY SEQRES 4 A 155 THR ILE GLY TYR HIS GLN GLY ASN PRO PRO ASP ALA ARG SEQRES 5 A 155 SER LYS ALA ALA GLY GLU LYS ARG GLY TYR SER PHE SER SEQRES 6 A 155 GLY ILE LYS ALA ARG LYS ILE ARG ASP GLU ASP PHE VAL SEQRES 7 A 155 LYS PHE ASP TRP ILE LEU ALA ALA ASP GLN GLU ASN LEU SEQRES 8 A 155 ALA GLU LEU LYS ALA ARG CYS PRO GLN SER HIS GLN HIS SEQRES 9 A 155 LYS LEU SER LEU MET LEU SER HIS SER ASP SER GLU TYR SEQRES 10 A 155 GLN GLU ILE PRO ASP PRO TYR TYR GLY GLY GLU ARG GLY SEQRES 11 A 155 PHE GLU LEU VAL LEU ASP LEU VAL GLU ASP ALA ALA GLU SEQRES 12 A 155 GLN PHE LEU LEU LYS LEU LYS GLN GLN GLY GLN HIS SEQRES 1 B 155 MET GLN LYS VAL LEU VAL VAL CYS MET GLY ASN ILE CYS SEQRES 2 B 155 ARG SER PRO THR ALA GLU ALA VAL LEU ARG ALA LYS ALA SEQRES 3 B 155 ALA GLN LEU LYS VAL ASP VAL GLU VAL ASP SER ALA GLY SEQRES 4 B 155 THR ILE GLY TYR HIS GLN GLY ASN PRO PRO ASP ALA ARG SEQRES 5 B 155 SER LYS ALA ALA GLY GLU LYS ARG GLY TYR SER PHE SER SEQRES 6 B 155 GLY ILE LYS ALA ARG LYS ILE ARG ASP GLU ASP PHE VAL SEQRES 7 B 155 LYS PHE ASP TRP ILE LEU ALA ALA ASP GLN GLU ASN LEU SEQRES 8 B 155 ALA GLU LEU LYS ALA ARG CYS PRO GLN SER HIS GLN HIS SEQRES 9 B 155 LYS LEU SER LEU MET LEU SER HIS SER ASP SER GLU TYR SEQRES 10 B 155 GLN GLU ILE PRO ASP PRO TYR TYR GLY GLY GLU ARG GLY SEQRES 11 B 155 PHE GLU LEU VAL LEU ASP LEU VAL GLU ASP ALA ALA GLU SEQRES 12 B 155 GLN PHE LEU LEU LYS LEU LYS GLN GLN GLY GLN HIS SEQRES 1 C 155 MET GLN LYS VAL LEU VAL VAL CYS MET GLY ASN ILE CYS SEQRES 2 C 155 ARG SER PRO THR ALA GLU ALA VAL LEU ARG ALA LYS ALA SEQRES 3 C 155 ALA GLN LEU LYS VAL ASP VAL GLU VAL ASP SER ALA GLY SEQRES 4 C 155 THR ILE GLY TYR HIS GLN GLY ASN PRO PRO ASP ALA ARG SEQRES 5 C 155 SER LYS ALA ALA GLY GLU LYS ARG GLY TYR SER PHE SER SEQRES 6 C 155 GLY ILE LYS ALA ARG LYS ILE ARG ASP GLU ASP PHE VAL SEQRES 7 C 155 LYS PHE ASP TRP ILE LEU ALA ALA ASP GLN GLU ASN LEU SEQRES 8 C 155 ALA GLU LEU LYS ALA ARG CYS PRO GLN SER HIS GLN HIS SEQRES 9 C 155 LYS LEU SER LEU MET LEU SER HIS SER ASP SER GLU TYR SEQRES 10 C 155 GLN GLU ILE PRO ASP PRO TYR TYR GLY GLY GLU ARG GLY SEQRES 11 C 155 PHE GLU LEU VAL LEU ASP LEU VAL GLU ASP ALA ALA GLU SEQRES 12 C 155 GLN PHE LEU LEU LYS LEU LYS GLN GLN GLY GLN HIS SEQRES 1 D 155 MET GLN LYS VAL LEU VAL VAL CYS MET GLY ASN ILE CYS SEQRES 2 D 155 ARG SER PRO THR ALA GLU ALA VAL LEU ARG ALA LYS ALA SEQRES 3 D 155 ALA GLN LEU LYS VAL ASP VAL GLU VAL ASP SER ALA GLY SEQRES 4 D 155 THR ILE GLY TYR HIS GLN GLY ASN PRO PRO ASP ALA ARG SEQRES 5 D 155 SER LYS ALA ALA GLY GLU LYS ARG GLY TYR SER PHE SER SEQRES 6 D 155 GLY ILE LYS ALA ARG LYS ILE ARG ASP GLU ASP PHE VAL SEQRES 7 D 155 LYS PHE ASP TRP ILE LEU ALA ALA ASP GLN GLU ASN LEU SEQRES 8 D 155 ALA GLU LEU LYS ALA ARG CYS PRO GLN SER HIS GLN HIS SEQRES 9 D 155 LYS LEU SER LEU MET LEU SER HIS SER ASP SER GLU TYR SEQRES 10 D 155 GLN GLU ILE PRO ASP PRO TYR TYR GLY GLY GLU ARG GLY SEQRES 11 D 155 PHE GLU LEU VAL LEU ASP LEU VAL GLU ASP ALA ALA GLU SEQRES 12 D 155 GLN PHE LEU LEU LYS LEU LYS GLN GLN GLY GLN HIS HET MPO A 201 13 HET SO4 A 202 5 HET SO4 A 203 5 HET MPO B 201 13 HET SO4 B 202 5 HET SO4 B 203 5 HET MPO C 201 13 HET SO4 C 202 5 HET SO4 C 203 5 HET MPO D 201 13 HET SO4 D 202 5 HET SO4 D 203 5 HETNAM MPO 3[N-MORPHOLINO]PROPANE SULFONIC ACID HETNAM SO4 SULFATE ION FORMUL 5 MPO 4(C7 H15 N O4 S) FORMUL 6 SO4 8(O4 S 2-) FORMUL 17 HOH *392(H2 O) HELIX 1 1 CYS A 13 LEU A 29 1 17 HELIX 2 2 ASP A 50 LYS A 59 1 10 HELIX 3 3 ARG A 73 PHE A 80 1 8 HELIX 4 4 ASP A 87 CYS A 98 1 12 HELIX 5 5 PRO A 99 HIS A 104 5 6 HELIX 6 6 LEU A 110 SER A 113 5 4 HELIX 7 7 GLY A 127 LEU A 149 1 23 HELIX 8 8 CYS B 13 LYS B 30 1 18 HELIX 9 9 ASP B 50 ARG B 60 1 11 HELIX 10 10 ASP B 74 PHE B 80 1 7 HELIX 11 11 ASP B 87 CYS B 98 1 12 HELIX 12 12 PRO B 99 HIS B 104 5 6 HELIX 13 13 LEU B 110 SER B 113 5 4 HELIX 14 14 GLY B 127 LYS B 150 1 24 HELIX 15 15 CYS C 13 LEU C 29 1 17 HELIX 16 16 ASP C 50 LYS C 59 1 10 HELIX 17 17 GLU C 75 PHE C 80 1 6 HELIX 18 18 ASP C 87 CYS C 98 1 12 HELIX 19 19 PRO C 99 HIS C 104 5 6 HELIX 20 20 LEU C 110 SER C 113 5 4 HELIX 21 21 GLY C 127 LYS C 148 1 22 HELIX 22 22 CYS D 13 LYS D 30 1 18 HELIX 23 23 ASP D 50 ARG D 60 1 11 HELIX 24 24 GLU D 75 PHE D 80 1 6 HELIX 25 25 ASP D 87 CYS D 98 1 12 HELIX 26 26 PRO D 99 HIS D 104 5 6 HELIX 27 27 LEU D 110 SER D 113 5 4 HELIX 28 28 GLY D 127 LYS D 148 1 22 SHEET 1 A 4 GLU A 34 GLY A 39 0 SHEET 2 A 4 LYS A 3 CYS A 8 1 N VAL A 4 O GLU A 34 SHEET 3 A 4 TRP A 82 ALA A 85 1 O LEU A 84 N VAL A 7 SHEET 4 A 4 LEU A 106 LEU A 108 1 O SER A 107 N ALA A 85 SHEET 1 B 4 VAL B 33 GLY B 39 0 SHEET 2 B 4 GLN B 2 CYS B 8 1 N VAL B 4 O GLU B 34 SHEET 3 B 4 TRP B 82 ALA B 85 1 O LEU B 84 N VAL B 7 SHEET 4 B 4 LEU B 106 LEU B 108 1 O SER B 107 N ALA B 85 SHEET 1 C 4 VAL C 33 GLY C 39 0 SHEET 2 C 4 GLN C 2 CYS C 8 1 N VAL C 4 O GLU C 34 SHEET 3 C 4 TRP C 82 ALA C 85 1 O LEU C 84 N VAL C 7 SHEET 4 C 4 LEU C 106 LEU C 108 1 O SER C 107 N ALA C 85 SHEET 1 D 4 VAL D 33 GLY D 39 0 SHEET 2 D 4 GLN D 2 CYS D 8 1 N VAL D 4 O GLU D 34 SHEET 3 D 4 TRP D 82 ALA D 85 1 O LEU D 84 N LEU D 5 SHEET 4 D 4 LEU D 106 LEU D 108 1 O SER D 107 N ALA D 85 SITE 1 AC1 12 CYS A 8 MET A 9 GLY A 10 ASN A 11 SITE 2 AC1 12 ILE A 12 CYS A 13 ARG A 14 TYR A 43 SITE 3 AC1 12 HIS A 44 ASP A 122 TYR A 124 HOH C 347 SITE 1 AC2 4 GLY A 127 ARG A 129 GLY A 130 HOH A 398 SITE 1 AC3 8 ILE A 41 GLY A 42 TYR A 43 LYS A 71 SITE 2 AC3 8 HOH A 392 GLY C 42 TYR C 43 SO4 C 203 SITE 1 AC4 13 CYS B 8 MET B 9 GLY B 10 ASN B 11 SITE 2 AC4 13 ILE B 12 CYS B 13 ARG B 14 HIS B 44 SITE 3 AC4 13 ASP B 122 TYR B 124 TYR B 125 GLU D 93 SITE 4 AC4 13 HOH D 348 SITE 1 AC5 5 GLY B 126 GLY B 127 ARG B 129 GLY B 130 SITE 2 AC5 5 HOH B 319 SITE 1 AC6 7 ILE B 41 GLY B 42 LYS B 71 GLY D 42 SITE 2 AC6 7 TYR D 43 SO4 D 203 HOH D 380 SITE 1 AC7 12 HOH A 339 CYS C 8 MET C 9 GLY C 10 SITE 2 AC7 12 ASN C 11 ILE C 12 CYS C 13 ARG C 14 SITE 3 AC7 12 HIS C 44 ASP C 122 TYR C 124 TYR C 125 SITE 1 AC8 3 LYS B 59 GLY C 127 GLU C 128 SITE 1 AC9 6 GLY A 42 TYR A 43 SO4 A 203 HOH A 392 SITE 2 AC9 6 GLY C 42 LYS C 71 SITE 1 BC1 12 HOH B 363 CYS D 8 MET D 9 GLY D 10 SITE 2 BC1 12 ASN D 11 ILE D 12 CYS D 13 ARG D 14 SITE 3 BC1 12 HIS D 44 ASP D 122 TYR D 124 TYR D 125 SITE 1 BC2 6 LYS A 59 HOH A 366 GLY D 127 GLU D 128 SITE 2 BC2 6 HOH D 328 HOH D 376 SITE 1 BC3 6 TYR B 43 SO4 B 203 ILE D 41 GLY D 42 SITE 2 BC3 6 LYS D 71 HOH D 380 CRYST1 87.470 87.470 73.850 90.00 90.00 120.00 P 31 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011433 0.006601 0.000000 0.00000 SCALE2 0.000000 0.013201 0.000000 0.00000 SCALE3 0.000000 0.000000 0.013541 0.00000