HEADER VIRAL PROTEIN/IMMUNE SYSTEM 23-JUL-13 4LSR TITLE CRYSTAL STRUCTURE OF BROADLY AND POTENTLY NEUTRALIZING ANTIBODY VRC- TITLE 2 CH31 IN COMPLEX WITH HIV-1 CLADE A/E STRAN 93TH057 GP120 WITH LOOP D TITLE 3 AND LOOP V5 FROM CLADE A STRAIN KER_2018_11 COMPND MOL_ID: 1; COMPND 2 MOLECULE: ENVELOPE GLYCOPROTEIN GP120 WITH LOOP D AND V5 FROM STRAIN COMPND 3 KER_2018_11; COMPND 4 CHAIN: G; COMPND 5 ENGINEERED: YES; COMPND 6 MOL_ID: 2; COMPND 7 MOLECULE: HEAVY CHAIN OF ANTIBODY VRC-CH31; COMPND 8 CHAIN: H; COMPND 9 ENGINEERED: YES; COMPND 10 MOL_ID: 3; COMPND 11 MOLECULE: LIGHT CHAIN OF ANTIBODY VRC-CH31 (N70D MUTATION); COMPND 12 CHAIN: L; COMPND 13 ENGINEERED: YES; COMPND 14 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HUMAN IMMUNODEFICIENCY VIRUS 1; SOURCE 3 ORGANISM_TAXID: 11676; SOURCE 4 STRAIN: 93TH057; SOURCE 5 GENE: ENV; SOURCE 6 EXPRESSION_SYSTEM: HOMO SAPIENS; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 9606; SOURCE 8 EXPRESSION_SYSTEM_CELL_LINE: HEK 293F; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PVRC8400; SOURCE 11 MOL_ID: 2; SOURCE 12 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 13 ORGANISM_TAXID: 9606; SOURCE 14 EXPRESSION_SYSTEM: HOMO SAPIENS; SOURCE 15 EXPRESSION_SYSTEM_TAXID: 9606; SOURCE 16 EXPRESSION_SYSTEM_CELL_LINE: HEK 293F; SOURCE 17 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 18 EXPRESSION_SYSTEM_PLASMID: PVRC8400; SOURCE 19 MOL_ID: 3; SOURCE 20 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 21 ORGANISM_TAXID: 9606; SOURCE 22 EXPRESSION_SYSTEM: HOMO SAPIENS; SOURCE 23 EXPRESSION_SYSTEM_TAXID: 9606; SOURCE 24 EXPRESSION_SYSTEM_CELL_LINE: HEK 293F; SOURCE 25 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 26 EXPRESSION_SYSTEM_PLASMID: PVRC8400 KEYWDS NEUTRALIZING ANTIBODY VRC-CH31, VIRAL PROTEIN-IMMUNE SYSTEM COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR T.ZHOU,S.MOQUIN,P.D.KWONG REVDAT 6 06-NOV-24 4LSR 1 HETSYN REVDAT 5 29-JUL-20 4LSR 1 COMPND REMARK HETNAM SSBOND REVDAT 5 2 1 LINK SITE REVDAT 4 07-MAY-14 4LSR 1 REMARK REVDAT 3 25-SEP-13 4LSR 1 JRNL REVDAT 2 04-SEP-13 4LSR 1 JRNL REVDAT 1 21-AUG-13 4LSR 0 JRNL AUTH T.ZHOU,J.ZHU,X.WU,S.MOQUIN,B.ZHANG,P.ACHARYA,I.S.GEORGIEV, JRNL AUTH 2 H.R.ALTAE-TRAN,G.Y.CHUANG,M.G.JOYCE,Y.DO KWON,N.S.LONGO, JRNL AUTH 3 M.K.LOUDER,T.LUONGO,K.MCKEE,C.A.SCHRAMM,J.SKINNER,Y.YANG, JRNL AUTH 4 Z.YANG,Z.ZHANG,A.ZHENG,M.BONSIGNORI,B.F.HAYNES,J.F.SCHEID, JRNL AUTH 5 M.C.NUSSENZWEIG,M.SIMEK,D.R.BURTON,W.C.KOFF,J.C.MULLIKIN, JRNL AUTH 6 M.CONNORS,L.SHAPIRO,G.J.NABEL,J.R.MASCOLA,P.D.KWONG JRNL TITL MULTIDONOR ANALYSIS REVEALS STRUCTURAL ELEMENTS, GENETIC JRNL TITL 2 DETERMINANTS, AND MATURATION PATHWAY FOR HIV-1 JRNL TITL 3 NEUTRALIZATION BY VRC01-CLASS ANTIBODIES. JRNL REF IMMUNITY V. 39 245 2013 JRNL REFN ISSN 1074-7613 JRNL PMID 23911655 JRNL DOI 10.1016/J.IMMUNI.2013.04.012 REMARK 2 REMARK 2 RESOLUTION. 2.28 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX DEV_998 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.28 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 39.50 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.350 REMARK 3 COMPLETENESS FOR RANGE (%) : 90.5 REMARK 3 NUMBER OF REFLECTIONS : 40990 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.198 REMARK 3 R VALUE (WORKING SET) : 0.194 REMARK 3 FREE R VALUE : 0.258 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.050 REMARK 3 FREE R VALUE TEST SET COUNT : 2069 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 39.5056 - 5.6152 0.99 3055 165 0.2058 0.2458 REMARK 3 2 5.6152 - 4.4589 1.00 2933 145 0.1538 0.2061 REMARK 3 3 4.4589 - 3.8958 0.99 2883 160 0.1536 0.2141 REMARK 3 4 3.8958 - 3.5399 0.99 2855 146 0.1766 0.2442 REMARK 3 5 3.5399 - 3.2863 0.97 2783 155 0.2022 0.2874 REMARK 3 6 3.2863 - 3.0926 0.97 2718 175 0.2089 0.2728 REMARK 3 7 3.0926 - 2.9378 0.93 2638 141 0.2068 0.2598 REMARK 3 8 2.9378 - 2.8099 0.90 2590 127 0.2120 0.2932 REMARK 3 9 2.8099 - 2.7018 0.87 2484 114 0.2200 0.2843 REMARK 3 10 2.7018 - 2.6086 0.87 2420 145 0.2449 0.3663 REMARK 3 11 2.6086 - 2.5270 0.85 2457 115 0.2424 0.2802 REMARK 3 12 2.5270 - 2.4548 0.85 2415 131 0.2321 0.2995 REMARK 3 13 2.4548 - 2.3902 0.83 2336 114 0.2430 0.3362 REMARK 3 14 2.3902 - 2.3319 0.80 2251 113 0.2574 0.3540 REMARK 3 15 2.3319 - 2.2789 0.75 2103 123 0.2451 0.3237 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.10 REMARK 3 SHRINKAGE RADIUS : 0.86 REMARK 3 K_SOL : 0.31 REMARK 3 B_SOL : 43.75 REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.320 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 28.740 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 41.10 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 78.32 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 22.93630 REMARK 3 B22 (A**2) : -11.92280 REMARK 3 B33 (A**2) : -11.01350 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.005 6244 REMARK 3 ANGLE : 0.854 8469 REMARK 3 CHIRALITY : 0.048 963 REMARK 3 PLANARITY : 0.003 1076 REMARK 3 DIHEDRAL : 14.078 2275 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 6 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: ( CHAIN G AND ( RESID 44:252 OR RESID 474:492 ) ) REMARK 3 ORIGIN FOR THE GROUP (A): -13.0200 0.4023 47.6568 REMARK 3 T TENSOR REMARK 3 T11: 0.2528 T22: 0.2403 REMARK 3 T33: 0.4253 T12: 0.0126 REMARK 3 T13: 0.1444 T23: 0.0048 REMARK 3 L TENSOR REMARK 3 L11: 2.7263 L22: 3.4836 REMARK 3 L33: 4.0454 L12: -0.8148 REMARK 3 L13: 2.3953 L23: -0.6313 REMARK 3 S TENSOR REMARK 3 S11: 0.0396 S12: 0.0863 S13: 0.0084 REMARK 3 S21: -0.1187 S22: -0.0419 S23: 0.3319 REMARK 3 S31: -0.1648 S32: -0.1491 S33: 0.0058 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: ( CHAIN G AND RESID 253:473 ) REMARK 3 ORIGIN FOR THE GROUP (A): -15.7102 -21.8072 49.2238 REMARK 3 T TENSOR REMARK 3 T11: 0.3200 T22: 0.2636 REMARK 3 T33: 0.5785 T12: -0.0619 REMARK 3 T13: 0.1383 T23: -0.0092 REMARK 3 L TENSOR REMARK 3 L11: 2.1569 L22: 2.3616 REMARK 3 L33: 3.1384 L12: -0.4861 REMARK 3 L13: 0.7125 L23: 0.2077 REMARK 3 S TENSOR REMARK 3 S11: -0.0023 S12: -0.0950 S13: -0.2085 REMARK 3 S21: 0.1462 S22: -0.0218 S23: 0.6602 REMARK 3 S31: 0.4424 S32: -0.4206 S33: -0.0237 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: ( CHAIN H AND RESID 1:118 ) REMARK 3 ORIGIN FOR THE GROUP (A): 2.0139 -27.5244 28.0974 REMARK 3 T TENSOR REMARK 3 T11: 0.6106 T22: 0.2684 REMARK 3 T33: 0.2981 T12: 0.0279 REMARK 3 T13: 0.0983 T23: 0.0384 REMARK 3 L TENSOR REMARK 3 L11: 4.0929 L22: 3.5943 REMARK 3 L33: 3.6376 L12: -2.6019 REMARK 3 L13: -1.4098 L23: 1.7230 REMARK 3 S TENSOR REMARK 3 S11: 0.2474 S12: 0.2721 S13: 0.0933 REMARK 3 S21: -1.0522 S22: -0.2920 S23: -0.1575 REMARK 3 S31: -0.2829 S32: 0.1304 S33: 0.1018 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: ( CHAIN H AND RESID 119:213 ) REMARK 3 ORIGIN FOR THE GROUP (A): 18.9239 -41.7281 1.9240 REMARK 3 T TENSOR REMARK 3 T11: 1.3474 T22: 0.5930 REMARK 3 T33: 0.6477 T12: -0.2464 REMARK 3 T13: 0.3689 T23: -0.1596 REMARK 3 L TENSOR REMARK 3 L11: 1.8192 L22: 1.2053 REMARK 3 L33: 4.2207 L12: -0.3127 REMARK 3 L13: -1.7097 L23: -1.3748 REMARK 3 S TENSOR REMARK 3 S11: 0.2599 S12: 0.1203 S13: 0.3653 REMARK 3 S21: -0.5199 S22: 0.2366 S23: -0.5398 REMARK 3 S31: -1.3712 S32: 0.6078 S33: -0.5031 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: ( CHAIN L AND RESID 1:108 ) REMARK 3 ORIGIN FOR THE GROUP (A): -7.5961 -17.4425 9.5981 REMARK 3 T TENSOR REMARK 3 T11: 1.9793 T22: 0.7486 REMARK 3 T33: 0.3302 T12: 0.7004 REMARK 3 T13: -0.0380 T23: 0.1764 REMARK 3 L TENSOR REMARK 3 L11: 0.4809 L22: 1.3453 REMARK 3 L33: 2.5097 L12: -0.3351 REMARK 3 L13: 0.8088 L23: -0.0353 REMARK 3 S TENSOR REMARK 3 S11: 0.5508 S12: 0.6491 S13: 0.2900 REMARK 3 S21: -1.6767 S22: -0.7979 S23: 0.3229 REMARK 3 S31: -0.3779 S32: -0.6904 S33: -0.0898 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: ( CHAIN L AND RESID 109:212 ) REMARK 3 ORIGIN FOR THE GROUP (A): 5.5687 -45.6430 -7.4090 REMARK 3 T TENSOR REMARK 3 T11: 1.3777 T22: 0.7713 REMARK 3 T33: 0.5272 T12: 0.1922 REMARK 3 T13: 0.0107 T23: -0.1631 REMARK 3 L TENSOR REMARK 3 L11: 3.8841 L22: 5.8171 REMARK 3 L33: 3.0429 L12: -0.7279 REMARK 3 L13: -1.3625 L23: 1.0824 REMARK 3 S TENSOR REMARK 3 S11: 0.3706 S12: 0.9707 S13: -0.3419 REMARK 3 S21: -0.5944 S22: -0.3145 S23: 0.5783 REMARK 3 S31: -0.9169 S32: -0.7270 S33: -0.0206 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4LSR COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 24-JUL-13. REMARK 100 THE DEPOSITION ID IS D_1000081039. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 07-NOV-11 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 22-BM REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0000 REMARK 200 MONOCHROMATOR : APS BM22 REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 225 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 41144 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.280 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 90.7 REMARK 200 DATA REDUNDANCY : 5.100 REMARK 200 R MERGE (I) : 0.13400 REMARK 200 R SYM (I) : 0.11000 REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 9.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.28 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.32 REMARK 200 COMPLETENESS FOR SHELL (%) : 75.0 REMARK 200 DATA REDUNDANCY IN SHELL : 3.70 REMARK 200 R MERGE FOR SHELL (I) : 0.60200 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 55.28 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.75 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1M TRIS, 11% PEG 4000, 0.2 M LI2SO4, REMARK 280 PH 8.5, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 32.46700 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 110.06000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 33.86300 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 110.06000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 32.46700 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 33.86300 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: G, H, L REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY G 318 REMARK 465 GLY G 319 REMARK 465 SER G 320 REMARK 465 GLY G 321 REMARK 465 SER G 322 REMARK 465 GLY G 323 REMARK 465 GLY G 403 REMARK 465 ASN G 404 REMARK 465 GLU G 405 REMARK 465 THR G 406 REMARK 465 GLU G 495 REMARK 465 TYR H 28B REMARK 465 SER H 28C REMARK 465 PRO H 28D REMARK 465 TYR H 28E REMARK 465 TRP H 28F REMARK 465 VAL H 28G REMARK 465 ASN H 28H REMARK 465 PRO H 28I REMARK 465 SER H 128 REMARK 465 LYS H 129 REMARK 465 SER H 130 REMARK 465 THR H 131 REMARK 465 SER H 132 REMARK 465 GLY H 133 REMARK 465 LYS H 214 REMARK 465 SER H 215 REMARK 465 CYS H 216 REMARK 465 ASP H 217 REMARK 465 LYS H 218 REMARK 465 GLU L 213 REMARK 465 CYS L 214 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OE1 GLU L 55 O HOH L 322 1.87 REMARK 500 ND2 ASN G 392 C2 NAG G 509 1.99 REMARK 500 NH1 ARG G 273 O HOH G 701 2.04 REMARK 500 O PHE G 233 O HOH G 684 2.04 REMARK 500 O LEU L 46 O HOH L 322 2.09 REMARK 500 O SER G 300 O HOH G 725 2.11 REMARK 500 ND2 ASN G 289 C2 NAG G 504 2.14 REMARK 500 ND2 ASN G 355 C2 NAG G 507 2.15 REMARK 500 O HOH H 420 O HOH H 423 2.15 REMARK 500 O PRO H 149 O HOH H 428 2.16 REMARK 500 O GLY G 462 OG SER G 465 2.17 REMARK 500 O PHE L 67 O HOH L 324 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN G 80 79.61 -150.66 REMARK 500 GLU G 87 -73.64 -32.59 REMARK 500 ASN G 88 42.75 -109.88 REMARK 500 ASP G 211 110.16 -164.12 REMARK 500 GLN G 258 -54.46 70.77 REMARK 500 GLU G 268 -83.30 -111.09 REMARK 500 ASN G 354 -103.51 32.30 REMARK 500 ASN G 355 33.90 -151.46 REMARK 500 ARG G 379 29.07 48.69 REMARK 500 PHE G 391 60.87 -115.99 REMARK 500 ASN G 411 -179.24 -62.74 REMARK 500 THR G 430 119.74 13.42 REMARK 500 THR G 461 -52.07 -127.76 REMARK 500 SER G 465 -114.93 50.22 REMARK 500 ASP H 28 29.58 125.06 REMARK 500 ASN H 54 10.74 -140.44 REMARK 500 ALA H 158 -64.02 -29.73 REMARK 500 ALA L 51 -43.63 78.28 REMARK 500 PRO L 59 145.41 -39.87 REMARK 500 HIS L 68 -89.73 65.82 REMARK 500 SER L 76 -74.36 -36.27 REMARK 500 ALA L 84 -170.58 -179.25 REMARK 500 TYR L 91 -116.20 58.43 REMARK 500 ASN L 138 72.41 65.25 REMARK 500 SER L 171 33.18 74.75 REMARK 500 ARG L 211 103.58 -48.71 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3NGB RELATED DB: PDB REMARK 900 RELATED ID: 3SE8 RELATED DB: PDB REMARK 900 RELATED ID: 3SE9 RELATED DB: PDB REMARK 900 RELATED ID: 4JPV RELATED DB: PDB REMARK 900 RELATED ID: 4JPW RELATED DB: PDB REMARK 900 RELATED ID: 4J6R RELATED DB: PDB REMARK 900 RELATED ID: 4JB9 RELATED DB: PDB DBREF 4LSR G 44 495 PDB 4LSR 4LSR 44 495 DBREF 4LSR H 1 218 PDB 4LSR 4LSR 1 218 DBREF 4LSR L 1 214 PDB 4LSR 4LSR 1 214 SEQRES 1 G 356 VAL TRP LYS ASP ALA ASP THR THR LEU PHE CYS ALA SER SEQRES 2 G 356 ASP ALA LYS ALA HIS GLU THR GLU VAL HIS ASN VAL TRP SEQRES 3 G 356 ALA THR HIS ALA CYS VAL PRO THR ASP PRO ASN PRO GLN SEQRES 4 G 356 GLU ILE HIS LEU GLU ASN VAL THR GLU ASN PHE ASN MET SEQRES 5 G 356 TRP LYS ASN ASN MET VAL GLU GLN MET GLN GLU ASP VAL SEQRES 6 G 356 ILE SER LEU TRP ASP GLN SER LEU GLN PRO CYS VAL LYS SEQRES 7 G 356 LEU THR GLY GLY SER VAL ILE LYS GLN ALA CYS PRO LYS SEQRES 8 G 356 ILE SER PHE ASP PRO ILE PRO ILE HIS TYR CYS THR PRO SEQRES 9 G 356 ALA GLY TYR VAL ILE LEU LYS CYS ASN ASP LYS ASN PHE SEQRES 10 G 356 ASN GLY THR GLY PRO CYS LYS ASN VAL SER SER VAL GLN SEQRES 11 G 356 CYS THR HIS GLY ILE LYS PRO VAL VAL SER THR GLN LEU SEQRES 12 G 356 LEU LEU ASN GLY SER LEU ALA GLU GLU GLU ILE ILE ILE SEQRES 13 G 356 ARG SER GLU ASN ILE SER ASP ASN ALA LYS THR ILE ILE SEQRES 14 G 356 VAL HIS LEU ASN LYS SER VAL GLU ILE ASN CYS THR ARG SEQRES 15 G 356 PRO SER ASN GLY GLY SER GLY SER GLY GLY ASP ILE ARG SEQRES 16 G 356 LYS ALA TYR CYS GLU ILE ASN GLY THR LYS TRP ASN LYS SEQRES 17 G 356 VAL LEU LYS GLN VAL THR GLU LYS LEU LYS GLU HIS PHE SEQRES 18 G 356 ASN ASN LYS THR ILE ILE PHE GLN PRO PRO SER GLY GLY SEQRES 19 G 356 ASP LEU GLU ILE THR MET HIS HIS PHE ASN CYS ARG GLY SEQRES 20 G 356 GLU PHE PHE TYR CYS ASN THR THR GLN LEU PHE ASN ASN SEQRES 21 G 356 THR CYS ILE GLY ASN GLU THR MET LYS GLY CYS ASN GLY SEQRES 22 G 356 THR ILE THR LEU PRO CYS LYS ILE LYS GLN ILE ILE ASN SEQRES 23 G 356 MET TRP GLN GLY THR GLY GLN ALA MET TYR ALA PRO PRO SEQRES 24 G 356 ILE ASP GLY LYS ILE ASN CYS VAL SER ASN ILE THR GLY SEQRES 25 G 356 ILE LEU LEU THR ARG ASP GLY GLY ASN THR GLY ASN ASN SEQRES 26 G 356 SER ARG THR ASN GLU THR PHE ARG PRO GLY GLY GLY ASN SEQRES 27 G 356 ILE LYS ASP ASN TRP ARG SER GLU LEU TYR LYS TYR LYS SEQRES 28 G 356 VAL VAL GLN ILE GLU SEQRES 1 H 236 GLN VAL GLN LEU VAL GLN SER GLY ALA ALA VAL ARG LYS SEQRES 2 H 236 PRO GLY ALA SER VAL THR VAL SER CYS LYS PHE ALA GLU SEQRES 3 H 236 ASP ASP ASP TYR SER PRO TYR TRP VAL ASN PRO ALA PRO SEQRES 4 H 236 GLU HIS PHE ILE HIS PHE LEU ARG GLN ALA PRO GLY GLN SEQRES 5 H 236 GLN LEU GLU TRP LEU ALA TRP MET ASN PRO THR ASN GLY SEQRES 6 H 236 ALA VAL ASN TYR ALA TRP TYR LEU ASN GLY ARG VAL THR SEQRES 7 H 236 ALA THR ARG ASP ARG SER MET THR THR ALA PHE LEU GLU SEQRES 8 H 236 VAL LYS SER LEU ARG SER ASP ASP THR ALA VAL TYR TYR SEQRES 9 H 236 CYS ALA ARG ALA GLN LYS ARG GLY ARG SER GLU TRP ALA SEQRES 10 H 236 TYR ALA HIS TRP GLY GLN GLY THR PRO VAL VAL VAL SER SEQRES 11 H 236 SER ALA SER THR LYS GLY PRO SER VAL PHE PRO LEU ALA SEQRES 12 H 236 PRO SER SER LYS SER THR SER GLY GLY THR ALA ALA LEU SEQRES 13 H 236 GLY CYS LEU VAL LYS ASP TYR PHE PRO GLU PRO VAL THR SEQRES 14 H 236 VAL SER TRP ASN SER GLY ALA LEU THR SER GLY VAL HIS SEQRES 15 H 236 THR PHE PRO ALA VAL LEU GLN SER SER GLY LEU TYR SER SEQRES 16 H 236 LEU SER SER VAL VAL THR VAL PRO SER SER SER LEU GLY SEQRES 17 H 236 THR GLN THR TYR ILE CYS ASN VAL ASN HIS LYS PRO SER SEQRES 18 H 236 ASN THR LYS VAL ASP LYS LYS VAL GLU PRO LYS SER CYS SEQRES 19 H 236 ASP LYS SEQRES 1 L 210 ASP ILE GLN MET THR GLN SER PRO SER SER LEU SER ALA SEQRES 2 L 210 SER LEU GLY ASP ARG VAL THR ILE THR CYS GLN ALA SER SEQRES 3 L 210 ARG GLY ILE GLY LYS ASP LEU ASN TRP TYR GLN GLN LYS SEQRES 4 L 210 ALA GLY LYS ALA PRO LYS LEU LEU VAL SER ASP ALA SER SEQRES 5 L 210 THR LEU GLU GLY GLY VAL PRO SER ARG PHE SER GLY SER SEQRES 6 L 210 GLY PHE HIS GLN ASP PHE SER LEU THR ILE SER SER LEU SEQRES 7 L 210 GLN ALA GLU ASP VAL ALA THR TYR PHE CYS GLN GLN TYR SEQRES 8 L 210 GLU THR PHE GLY GLN GLY THR LYS VAL ASP ILE LYS ARG SEQRES 9 L 210 THR VAL ALA ALA PRO SER VAL PHE ILE PHE PRO PRO SER SEQRES 10 L 210 ASP GLU GLN LEU LYS SER GLY THR ALA SER VAL VAL CYS SEQRES 11 L 210 LEU LEU ASN ASN PHE TYR PRO ARG GLU ALA LYS VAL GLN SEQRES 12 L 210 TRP LYS VAL ASP ASN ALA LEU GLN SER GLY ASN SER GLN SEQRES 13 L 210 GLU SER VAL THR GLU GLN ASP SER LYS ASP SER THR TYR SEQRES 14 L 210 SER LEU SER SER THR LEU THR LEU SER LYS ALA ASP TYR SEQRES 15 L 210 GLU LYS HIS LYS VAL TYR ALA CYS GLU VAL THR HIS GLN SEQRES 16 L 210 GLY LEU SER SER PRO VAL THR LYS SER PHE ASN ARG GLY SEQRES 17 L 210 GLU CYS MODRES 4LSR ASN G 234 ASN GLYCOSYLATION SITE MODRES 4LSR ASN G 355 ASN GLYCOSYLATION SITE MODRES 4LSR ASN G 386 ASN GLYCOSYLATION SITE MODRES 4LSR ASN G 289 ASN GLYCOSYLATION SITE MODRES 4LSR ASN G 276 ASN GLYCOSYLATION SITE MODRES 4LSR ASN G 295 ASN GLYCOSYLATION SITE MODRES 4LSR ASN G 262 ASN GLYCOSYLATION SITE MODRES 4LSR ASN G 334 ASN GLYCOSYLATION SITE MODRES 4LSR ASN G 392 ASN GLYCOSYLATION SITE HET NAG G 501 14 HET NAG G 502 14 HET NAG G 503 14 HET NAG G 504 14 HET NAG G 505 14 HET NAG G 506 14 HET NAG G 507 14 HET NAG G 508 14 HET NAG G 509 14 HET SO4 G 510 5 HET SO4 G 511 5 HET SO4 G 512 5 HET SO4 G 513 5 HET SO4 H 301 5 HETNAM NAG 2-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE HETNAM SO4 SULFATE ION HETSYN NAG N-ACETYL-BETA-D-GLUCOSAMINE; 2-ACETAMIDO-2-DEOXY-BETA- HETSYN 2 NAG D-GLUCOSE; 2-ACETAMIDO-2-DEOXY-D-GLUCOSE; 2-ACETAMIDO- HETSYN 3 NAG 2-DEOXY-GLUCOSE; N-ACETYL-D-GLUCOSAMINE FORMUL 4 NAG 9(C8 H15 N O6) FORMUL 13 SO4 5(O4 S 2-) FORMUL 18 HOH *224(H2 O) HELIX 1 1 GLU G 64 ALA G 73 1 10 HELIX 2 2 ASN G 98 LEU G 116 1 19 HELIX 3 3 GLY G 335 GLU G 351 1 17 HELIX 4 4 ASP G 368 MET G 373 1 6 HELIX 5 5 THR G 387 ASN G 392 5 6 HELIX 6 6 ILE G 478 TYR G 487 1 10 HELIX 7 7 TRP H 61 ASN H 64 5 4 HELIX 8 8 ARG H 83 THR H 87 5 5 HELIX 9 9 SER H 187 THR H 191 5 5 HELIX 10 10 LYS H 201 ASN H 204 5 4 HELIX 11 11 GLN L 79 VAL L 83 5 5 HELIX 12 12 SER L 121 SER L 127 1 7 HELIX 13 13 LYS L 183 GLU L 187 1 5 SHEET 1 A 5 LYS G 46 ASP G 47 0 SHEET 2 A 5 TYR G 489 GLN G 493 -1 O GLN G 493 N LYS G 46 SHEET 3 A 5 TYR G 223 CYS G 228 -1 N LEU G 226 O LYS G 490 SHEET 4 A 5 VAL G 242 VAL G 245 -1 O SER G 243 N LYS G 227 SHEET 5 A 5 GLU G 83 HIS G 85 -1 N ILE G 84 O SER G 244 SHEET 1 B 3 CYS G 74 PRO G 76 0 SHEET 2 B 3 PHE G 53 SER G 56 1 N SER G 56 O VAL G 75 SHEET 3 B 3 ILE G 215 CYS G 218 -1 O CYS G 218 N PHE G 53 SHEET 1 C 2 GLU G 91 ASN G 94 0 SHEET 2 C 2 THR G 236 CYS G 239 -1 O GLY G 237 N PHE G 93 SHEET 1 D 4 SER G 199 LYS G 202 0 SHEET 2 D 4 VAL G 120 THR G 123 -1 N LYS G 121 O ILE G 201 SHEET 3 D 4 GLN G 432 MET G 434 -1 O GLN G 432 N LEU G 122 SHEET 4 D 4 ILE G 423 ASN G 425 -1 N ILE G 424 O ALA G 433 SHEET 1 E 5 LEU G 259 LEU G 261 0 SHEET 2 E 5 ILE G 443 ARG G 456 -1 O GLY G 451 N LEU G 260 SHEET 3 E 5 ILE G 284 ARG G 298 -1 N VAL G 286 O ILE G 452 SHEET 4 E 5 ASN G 468 PRO G 473 0 SHEET 5 E 5 THR G 358 PHE G 361 1 N ILE G 360 O PHE G 471 SHEET 1 F 7 ILE G 271 ARG G 273 0 SHEET 2 F 7 ILE G 284 ARG G 298 -1 O HIS G 287 N ILE G 271 SHEET 3 F 7 ILE G 443 ARG G 456 -1 O ILE G 452 N VAL G 286 SHEET 4 F 7 LYS G 328 ASN G 334 0 SHEET 5 F 7 THR G 413 LYS G 421 -1 O ILE G 414 N ILE G 333 SHEET 6 F 7 GLU G 381 CYS G 385 -1 N TYR G 384 O LYS G 419 SHEET 7 F 7 HIS G 374 CYS G 378 -1 N PHE G 376 O PHE G 383 SHEET 1 G 4 VAL H 5 GLN H 6 0 SHEET 2 G 4 VAL H 18 LYS H 23 -1 O LYS H 23 N VAL H 5 SHEET 3 G 4 THR H 77 VAL H 82 -1 O LEU H 80 N VAL H 20 SHEET 4 G 4 VAL H 67 ARG H 71 -1 N THR H 68 O GLU H 81 SHEET 1 H 6 ALA H 10 ARG H 12 0 SHEET 2 H 6 THR H 107 VAL H 111 1 O VAL H 110 N ARG H 12 SHEET 3 H 6 ALA H 88 ALA H 95 -1 N ALA H 88 O VAL H 109 SHEET 4 H 6 ILE H 35 GLN H 39 -1 N HIS H 35A O ALA H 93 SHEET 5 H 6 GLU H 46 MET H 51 -1 O MET H 51 N ILE H 35 SHEET 6 H 6 VAL H 57 TYR H 59 -1 O ASN H 58 N TRP H 50 SHEET 1 I 4 ALA H 10 ARG H 12 0 SHEET 2 I 4 THR H 107 VAL H 111 1 O VAL H 110 N ARG H 12 SHEET 3 I 4 ALA H 88 ALA H 95 -1 N ALA H 88 O VAL H 109 SHEET 4 I 4 TYR H 100E TRP H 103 -1 O HIS H 102 N ARG H 94 SHEET 1 J 4 SER H 120 LEU H 124 0 SHEET 2 J 4 THR H 135 TYR H 145 -1 O LEU H 141 N PHE H 122 SHEET 3 J 4 TYR H 176 PRO H 185 -1 O VAL H 182 N LEU H 138 SHEET 4 J 4 VAL H 163 THR H 165 -1 N HIS H 164 O VAL H 181 SHEET 1 K 4 SER H 120 LEU H 124 0 SHEET 2 K 4 THR H 135 TYR H 145 -1 O LEU H 141 N PHE H 122 SHEET 3 K 4 TYR H 176 PRO H 185 -1 O VAL H 182 N LEU H 138 SHEET 4 K 4 VAL H 169 LEU H 170 -1 N VAL H 169 O SER H 177 SHEET 1 L 3 THR H 151 TRP H 154 0 SHEET 2 L 3 ILE H 195 HIS H 200 -1 O ASN H 197 N SER H 153 SHEET 3 L 3 THR H 205 LYS H 210 -1 O THR H 205 N HIS H 200 SHEET 1 M 4 MET L 4 SER L 7 0 SHEET 2 M 4 VAL L 19 ALA L 25 -1 O THR L 22 N SER L 7 SHEET 3 M 4 ASP L 70 ILE L 75 -1 O LEU L 73 N ILE L 21 SHEET 4 M 4 PHE L 62 PHE L 67 -1 N SER L 63 O THR L 74 SHEET 1 N 6 SER L 10 ALA L 13 0 SHEET 2 N 6 THR L 102 ILE L 106 1 O LYS L 103 N LEU L 11 SHEET 3 N 6 ALA L 84 GLN L 90 -1 N ALA L 84 O VAL L 104 SHEET 4 N 6 ASN L 34 GLN L 38 -1 N GLN L 38 O THR L 85 SHEET 5 N 6 LYS L 45 SER L 49 -1 O LEU L 47 N TRP L 35 SHEET 6 N 6 THR L 53 LEU L 54 -1 O THR L 53 N SER L 49 SHEET 1 O 4 SER L 10 ALA L 13 0 SHEET 2 O 4 THR L 102 ILE L 106 1 O LYS L 103 N LEU L 11 SHEET 3 O 4 ALA L 84 GLN L 90 -1 N ALA L 84 O VAL L 104 SHEET 4 O 4 THR L 97 PHE L 98 -1 O THR L 97 N GLN L 90 SHEET 1 P 4 SER L 114 PHE L 118 0 SHEET 2 P 4 THR L 129 PHE L 139 -1 O LEU L 135 N PHE L 116 SHEET 3 P 4 TYR L 173 SER L 182 -1 O LEU L 175 N LEU L 136 SHEET 4 P 4 SER L 159 VAL L 163 -1 N GLN L 160 O THR L 178 SHEET 1 Q 4 LEU L 154 GLN L 155 0 SHEET 2 Q 4 LYS L 145 VAL L 150 -1 N TRP L 148 O GLN L 155 SHEET 3 Q 4 VAL L 191 THR L 197 -1 O ALA L 193 N LYS L 149 SHEET 4 Q 4 VAL L 205 ASN L 210 -1 O VAL L 205 N VAL L 196 SSBOND 1 CYS G 54 CYS G 74 1555 1555 2.05 SSBOND 2 CYS G 119 CYS G 205 1555 1555 2.04 SSBOND 3 CYS G 218 CYS G 247 1555 1555 2.04 SSBOND 4 CYS G 228 CYS G 239 1555 1555 2.04 SSBOND 5 CYS G 296 CYS G 331 1555 1555 2.05 SSBOND 6 CYS G 331 CYS G 385 1555 1555 2.05 SSBOND 7 CYS G 331 CYS G 418 1555 1555 2.05 SSBOND 8 CYS G 378 CYS G 445 1555 1555 2.03 SSBOND 9 CYS G 385 CYS G 418 1555 1555 2.03 SSBOND 10 CYS G 395 CYS G 410 1555 1555 2.04 SSBOND 11 CYS H 22 CYS H 92 1555 1555 2.04 SSBOND 12 CYS H 140 CYS H 196 1555 1555 2.04 SSBOND 13 CYS L 23 CYS L 88 1555 1555 2.04 SSBOND 14 CYS L 134 CYS L 194 1555 1555 2.04 LINK ND2 ASN G 234 C1 NAG G 501 1555 1555 1.44 LINK ND2 ASN G 262 C1 NAG G 502 1555 1555 1.45 LINK ND2 ASN G 276 C1 NAG G 503 1555 1555 1.44 LINK ND2 ASN G 289 C1 NAG G 504 1555 1555 1.44 LINK ND2 ASN G 295 C1 NAG G 505 1555 1555 1.44 LINK ND2 ASN G 334 C1 NAG G 506 1555 1555 1.45 LINK ND2 ASN G 355 C1 NAG G 507 1555 1555 1.44 LINK ND2 ASN G 386 C1 NAG G 508 1555 1555 1.44 LINK ND2 ASN G 392 C1 NAG G 509 1555 1555 1.46 CISPEP 1 PHE H 146 PRO H 147 0 -6.55 CISPEP 2 GLU H 148 PRO H 149 0 -2.44 CISPEP 3 SER L 7 PRO L 8 0 0.19 CISPEP 4 TYR L 140 PRO L 141 0 0.33 CRYST1 64.934 67.726 220.120 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.015400 0.000000 0.000000 0.00000 SCALE2 0.000000 0.014765 0.000000 0.00000 SCALE3 0.000000 0.000000 0.004543 0.00000