HEADER ISOMERASE 23-JUL-13 4LTA TITLE THE CRYSTAL STRUCTURE OF THE P132R, Y133G MUTANT OF PYROCOCCUS TITLE 2 FURIOSUS PHOSPHOGLUCOSE ISOMERASE IN COMPLEX WITH MANGANESE AND 5- TITLE 3 PHOSPHO-D-ARABINONATE. COMPND MOL_ID: 1; COMPND 2 MOLECULE: GLUCOSE-6-PHOSPHATE ISOMERASE; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: GPI, PHOSPHOGLUCOSE ISOMERASE, PGI, PHOSPHOHEXOSE ISOMERASE, COMPND 5 PHI; COMPND 6 EC: 5.3.1.9; COMPND 7 ENGINEERED: YES; COMPND 8 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PYROCOCCUS FURIOSUS; SOURCE 3 ORGANISM_TAXID: 186497; SOURCE 4 STRAIN: ATCC 43587 / DSM 3638 / JCM 8422 / VC1; SOURCE 5 GENE: PGIA, PF0196; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET24D KEYWDS CUPIN FOLD, ISOMERASE, GLUCOSE 6-PHOSPHATE AND FRUCTOSE 6-PHOSPHATE KEYWDS 2 BINDING EXPDTA X-RAY DIFFRACTION AUTHOR P.J.BAKER,F.M.ALMOURFI REVDAT 3 20-SEP-23 4LTA 1 REMARK LINK REVDAT 2 24-JAN-18 4LTA 1 JRNL REVDAT 1 30-JUL-14 4LTA 0 JRNL AUTH P.J.BAKER,F.M.ALMOURFI,J.RAEDTS,H.-J.JOOSTEN,S.HENDRIKS, JRNL AUTH 2 S.W.M.KENGEN,W.R.HAGE,P.J.SCHAAP,S.E.SEDELNIKOVA, JRNL AUTH 3 J.VAN DER OOST JRNL TITL CORRELATED MUTATION ANALYSIS AS A TOOL FOR SMART LIBRARY JRNL TITL 2 DESIGN TO IMPROVE PROTEIN PERFORMANCE. JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.04 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0109 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.04 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 26.58 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 25635 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.221 REMARK 3 R VALUE (WORKING SET) : 0.217 REMARK 3 FREE R VALUE : 0.295 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1356 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.04 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.09 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1875 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 100.0 REMARK 3 BIN R VALUE (WORKING SET) : 0.2230 REMARK 3 BIN FREE R VALUE SET COUNT : 82 REMARK 3 BIN FREE R VALUE : 0.3080 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3032 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 48 REMARK 3 SOLVENT ATOMS : 140 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 42.79 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.69000 REMARK 3 B22 (A**2) : -2.43000 REMARK 3 B33 (A**2) : 3.13000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.226 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.217 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.168 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 6.005 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.928 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.877 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3152 ; 0.013 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4250 ; 1.417 ; 1.965 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 376 ; 6.479 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 148 ;32.896 ;24.324 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 538 ;15.413 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 14 ;17.472 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 440 ; 0.099 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2392 ; 0.006 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1868 ;46.146 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3008 ;44.184 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1284 ;98.411 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1242 ;73.770 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 4LTA COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 30-JUL-13. REMARK 100 THE DEPOSITION ID IS D_1000081058. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 15-MAY-11 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I03 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97630 REMARK 200 MONOCHROMATOR : DIAMOND I03 REMARK 200 OPTICS : DIAMOND I03 REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XIA2 REMARK 200 DATA SCALING SOFTWARE : XIA2 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 26994 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.040 REMARK 200 RESOLUTION RANGE LOW (A) : 26.580 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 200 DATA REDUNDANCY : 6.300 REMARK 200 R MERGE (I) : 0.07400 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 7.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.04 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.09 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.9 REMARK 200 DATA REDUNDANCY IN SHELL : 6.40 REMARK 200 R MERGE FOR SHELL (I) : 0.21900 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 1X7N REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 48.79 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.40 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.35M MAGNESIUM CHLORIDE, 0.1M SODIUM REMARK 280 ACETATE, 19% PEG4000, PH 5.5, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 290K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 36.47500 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 37.95000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 37.23500 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 37.95000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 36.47500 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 37.23500 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: THE ASYMMETRIC UNIT CONTAINS THE BIOLOGICAL DIMER REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 6070 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 16620 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -41.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OG SER A 28 OD2 ASP A 48 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 TYR A 2 112.56 74.18 REMARK 500 GLU A 47 -49.87 -150.93 REMARK 500 LYS A 188 -131.46 -119.99 REMARK 500 GLU B 47 -27.36 -140.71 REMARK 500 ASP B 48 61.96 34.82 REMARK 500 ASP B 94 43.39 -96.71 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN A 201 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 88 NE2 REMARK 620 2 HIS A 90 NE2 107.6 REMARK 620 3 GLU A 97 OE1 162.7 81.7 REMARK 620 4 HIS A 136 NE2 84.5 91.8 80.6 REMARK 620 5 PA5 A 202 O1A 86.6 164.9 85.8 94.7 REMARK 620 6 HOH A 357 O 96.8 89.0 97.9 178.1 84.1 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN B 201 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS B 88 NE2 REMARK 620 2 HIS B 90 NE2 100.7 REMARK 620 3 GLU B 97 OE1 167.8 83.9 REMARK 620 4 HIS B 136 NE2 82.4 112.5 85.4 REMARK 620 5 PA5 B 202 O1 89.8 164.3 88.1 80.2 REMARK 620 6 HOH B 380 O 98.5 81.8 93.3 165.4 85.2 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MN A 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PA5 A 202 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 203 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 204 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MN B 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PA5 B 202 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO B 203 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO B 204 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4LUK RELATED DB: PDB REMARK 900 RELATED ID: 4LUL RELATED DB: PDB REMARK 900 RELATED ID: 4LUM RELATED DB: PDB DBREF 4LTA A 1 189 UNP P83194 G6PI_PYRFU 1 189 DBREF 4LTA B 1 189 UNP P83194 G6PI_PYRFU 1 189 SEQADV 4LTA ARG A 132 UNP P83194 PRO 132 ENGINEERED MUTATION SEQADV 4LTA GLY A 133 UNP P83194 TYR 133 ENGINEERED MUTATION SEQADV 4LTA ARG B 132 UNP P83194 PRO 132 ENGINEERED MUTATION SEQADV 4LTA GLY B 133 UNP P83194 TYR 133 ENGINEERED MUTATION SEQRES 1 A 189 MET TYR LYS GLU PRO PHE GLY VAL LYS VAL ASP PHE GLU SEQRES 2 A 189 THR GLY ILE ILE GLU GLY ALA LYS LYS SER VAL ARG ARG SEQRES 3 A 189 LEU SER ASP MET GLU GLY TYR PHE VAL ASP GLU ARG ALA SEQRES 4 A 189 TRP LYS GLU LEU VAL GLU LYS GLU ASP PRO VAL VAL TYR SEQRES 5 A 189 GLU VAL TYR ALA VAL GLU GLN GLU GLU LYS GLU GLY ASP SEQRES 6 A 189 LEU ASN PHE ALA THR THR VAL LEU TYR PRO GLY LYS VAL SEQRES 7 A 189 GLY LYS GLU PHE PHE PHE THR LYS GLY HIS PHE HIS ALA SEQRES 8 A 189 LYS LEU ASP ARG ALA GLU VAL TYR VAL ALA LEU LYS GLY SEQRES 9 A 189 LYS GLY GLY MET LEU LEU GLN THR PRO GLU GLY ASP ALA SEQRES 10 A 189 LYS TRP ILE SER MET GLU PRO GLY THR VAL VAL TYR VAL SEQRES 11 A 189 PRO ARG GLY TRP ALA HIS ARG THR VAL ASN ILE GLY ASP SEQRES 12 A 189 GLU PRO PHE ILE PHE LEU ALA ILE TYR PRO ALA ASP ALA SEQRES 13 A 189 GLY HIS ASP TYR GLY THR ILE ALA GLU LYS GLY PHE SER SEQRES 14 A 189 LYS ILE VAL ILE GLU GLU ASN GLY GLU VAL LYS VAL VAL SEQRES 15 A 189 ASP ASN PRO ARG TRP LYS LYS SEQRES 1 B 189 MET TYR LYS GLU PRO PHE GLY VAL LYS VAL ASP PHE GLU SEQRES 2 B 189 THR GLY ILE ILE GLU GLY ALA LYS LYS SER VAL ARG ARG SEQRES 3 B 189 LEU SER ASP MET GLU GLY TYR PHE VAL ASP GLU ARG ALA SEQRES 4 B 189 TRP LYS GLU LEU VAL GLU LYS GLU ASP PRO VAL VAL TYR SEQRES 5 B 189 GLU VAL TYR ALA VAL GLU GLN GLU GLU LYS GLU GLY ASP SEQRES 6 B 189 LEU ASN PHE ALA THR THR VAL LEU TYR PRO GLY LYS VAL SEQRES 7 B 189 GLY LYS GLU PHE PHE PHE THR LYS GLY HIS PHE HIS ALA SEQRES 8 B 189 LYS LEU ASP ARG ALA GLU VAL TYR VAL ALA LEU LYS GLY SEQRES 9 B 189 LYS GLY GLY MET LEU LEU GLN THR PRO GLU GLY ASP ALA SEQRES 10 B 189 LYS TRP ILE SER MET GLU PRO GLY THR VAL VAL TYR VAL SEQRES 11 B 189 PRO ARG GLY TRP ALA HIS ARG THR VAL ASN ILE GLY ASP SEQRES 12 B 189 GLU PRO PHE ILE PHE LEU ALA ILE TYR PRO ALA ASP ALA SEQRES 13 B 189 GLY HIS ASP TYR GLY THR ILE ALA GLU LYS GLY PHE SER SEQRES 14 B 189 LYS ILE VAL ILE GLU GLU ASN GLY GLU VAL LYS VAL VAL SEQRES 15 B 189 ASP ASN PRO ARG TRP LYS LYS HET MN A 201 1 HET PA5 A 202 15 HET EDO A 203 4 HET EDO A 204 4 HET MN B 201 1 HET PA5 B 202 15 HET EDO B 203 4 HET EDO B 204 4 HETNAM MN MANGANESE (II) ION HETNAM PA5 5-PHOSPHOARABINONIC ACID HETNAM EDO 1,2-ETHANEDIOL HETSYN EDO ETHYLENE GLYCOL FORMUL 3 MN 2(MN 2+) FORMUL 4 PA5 2(C5 H11 O9 P) FORMUL 5 EDO 4(C2 H6 O2) FORMUL 11 HOH *140(H2 O) HELIX 1 1 SER A 28 GLU A 31 5 4 HELIX 2 2 ASP A 36 GLU A 47 1 12 HELIX 3 3 TYR A 160 GLY A 167 1 8 HELIX 4 4 SER B 28 GLU B 31 5 4 HELIX 5 5 ASP B 36 GLU B 47 1 12 HELIX 6 6 TYR B 160 GLY B 167 1 8 SHEET 1 A 7 PHE A 6 LYS A 9 0 SHEET 2 A 7 THR B 126 VAL B 130 -1 O TYR B 129 N PHE A 6 SHEET 3 A 7 GLU B 97 LYS B 103 -1 N GLU B 97 O VAL B 130 SHEET 4 A 7 PHE B 146 PRO B 153 -1 O LEU B 149 N VAL B 100 SHEET 5 A 7 LEU B 66 LEU B 73 -1 N LEU B 73 O PHE B 146 SHEET 6 A 7 VAL B 50 VAL B 57 -1 N VAL B 57 O PHE B 68 SHEET 7 A 7 LYS B 21 ARG B 26 -1 N LYS B 21 O ALA B 56 SHEET 1 B 7 LYS A 21 ARG A 26 0 SHEET 2 B 7 VAL A 50 VAL A 57 -1 O TYR A 52 N ARG A 25 SHEET 3 B 7 LEU A 66 LEU A 73 -1 O PHE A 68 N VAL A 57 SHEET 4 B 7 PHE A 146 PRO A 153 -1 O TYR A 152 N ASN A 67 SHEET 5 B 7 GLU A 97 LYS A 103 -1 N VAL A 100 O LEU A 149 SHEET 6 B 7 THR A 126 VAL A 130 -1 O THR A 126 N ALA A 101 SHEET 7 B 7 PHE B 6 LYS B 9 -1 O PHE B 6 N TYR A 129 SHEET 1 C 2 LYS A 77 VAL A 78 0 SHEET 2 C 2 GLU A 81 PHE A 82 -1 O GLU A 81 N VAL A 78 SHEET 1 D 3 ALA A 117 MET A 122 0 SHEET 2 D 3 GLY A 106 GLN A 111 -1 N GLY A 106 O MET A 122 SHEET 3 D 3 ALA A 135 ASN A 140 -1 O ARG A 137 N LEU A 109 SHEET 1 E 2 LYS A 170 GLU A 175 0 SHEET 2 E 2 GLU A 178 ASP A 183 -1 O VAL A 182 N ILE A 171 SHEET 1 F 2 LYS B 77 VAL B 78 0 SHEET 2 F 2 GLU B 81 PHE B 82 -1 O GLU B 81 N VAL B 78 SHEET 1 G 3 ALA B 117 MET B 122 0 SHEET 2 G 3 GLY B 106 GLN B 111 -1 N GLY B 106 O MET B 122 SHEET 3 G 3 ALA B 135 ASN B 140 -1 O ARG B 137 N LEU B 109 SHEET 1 H 2 LYS B 170 GLU B 175 0 SHEET 2 H 2 GLU B 178 ASP B 183 -1 O VAL B 182 N ILE B 171 LINK NE2 HIS A 88 MN MN A 201 1555 1555 2.50 LINK NE2 HIS A 90 MN MN A 201 1555 1555 2.22 LINK OE1 GLU A 97 MN MN A 201 1555 1555 2.24 LINK NE2 HIS A 136 MN MN A 201 1555 1555 2.40 LINK MN MN A 201 O1A PA5 A 202 1555 1555 2.21 LINK MN MN A 201 O HOH A 357 1555 1555 2.74 LINK NE2 HIS B 88 MN MN B 201 1555 1555 2.33 LINK NE2 HIS B 90 MN MN B 201 1555 1555 2.20 LINK OE1 GLU B 97 MN MN B 201 1555 1555 2.27 LINK NE2 HIS B 136 MN MN B 201 1555 1555 2.33 LINK MN MN B 201 O1 PA5 B 202 1555 1555 2.26 LINK MN MN B 201 O HOH B 380 1555 1555 2.27 SITE 1 AC1 6 HIS A 88 HIS A 90 GLU A 97 HIS A 136 SITE 2 AC1 6 PA5 A 202 HOH A 357 SITE 1 AC2 16 TYR A 52 THR A 71 THR A 85 GLY A 87 SITE 2 AC2 16 HIS A 88 GLU A 97 TYR A 99 HIS A 136 SITE 3 AC2 16 PHE A 148 TYR A 160 MN A 201 EDO A 203 SITE 4 AC2 16 HOH A 355 HOH A 356 HOH A 357 HOH A 358 SITE 1 AC3 3 TYR A 152 HIS A 158 PA5 A 202 SITE 1 AC4 4 SER A 23 VAL A 24 ARG A 25 GLU B 18 SITE 1 AC5 6 HIS B 88 HIS B 90 GLU B 97 HIS B 136 SITE 2 AC5 6 PA5 B 202 HOH B 380 SITE 1 AC6 19 TYR B 52 THR B 71 THR B 85 GLY B 87 SITE 2 AC6 19 HIS B 88 GLU B 97 TYR B 99 HIS B 136 SITE 3 AC6 19 PHE B 148 ALA B 150 TYR B 152 TYR B 160 SITE 4 AC6 19 MN B 201 EDO B 204 HOH B 316 HOH B 319 SITE 5 AC6 19 HOH B 376 HOH B 380 HOH B 381 SITE 1 AC7 4 ARG B 25 LYS B 86 TYR B 160 EDO B 204 SITE 1 AC8 3 TYR B 160 PA5 B 202 EDO B 203 CRYST1 72.950 74.470 75.900 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.013708 0.000000 0.000000 0.00000 SCALE2 0.000000 0.013428 0.000000 0.00000 SCALE3 0.000000 0.000000 0.013175 0.00000