HEADER ISOMERASE/ISOMERASE INHIBITOR 25-JUL-13 4LUT TITLE ALANINE RACEMASE [CLOSTRIDIUM DIFFICILE 630] COMPLEX WITH CYCLOSERINE COMPND MOL_ID: 1; COMPND 2 MOLECULE: ALANINE RACEMASE; COMPND 3 CHAIN: A; COMPND 4 EC: 5.1.1.1; COMPND 5 ENGINEERED: YES; COMPND 6 MOL_ID: 2; COMPND 7 MOLECULE: ALANINE RACEMASE; COMPND 8 CHAIN: B; COMPND 9 EC: 5.1.1.1; COMPND 10 ENGINEERED: YES; COMPND 11 OTHER_DETAILS: CARBOXYLIC MODIFIED LYSINE SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: CLOSTRIDIUM DIFFICILE; SOURCE 3 ORGANISM_TAXID: 272563; SOURCE 4 STRAIN: 630; SOURCE 5 GENE: ALR2, CD630_34630; SOURCE 6 EXPRESSION_SYSTEM: PICHIA PASTORIS; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 4922; SOURCE 8 MOL_ID: 2; SOURCE 9 ORGANISM_SCIENTIFIC: CLOSTRIDIUM DIFFICILE; SOURCE 10 ORGANISM_TAXID: 272563; SOURCE 11 STRAIN: 630; SOURCE 12 GENE: ALR2, CD630_34630; SOURCE 13 EXPRESSION_SYSTEM: PICHIA PASTORIS; SOURCE 14 EXPRESSION_SYSTEM_TAXID: 4922 KEYWDS ISOMERASE-ISOMERASE INHIBITOR COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR O.A.ASOJO REVDAT 4 06-DEC-23 4LUT 1 REMARK REVDAT 3 20-SEP-23 4LUT 1 REMARK LINK REVDAT 2 23-JUL-14 4LUT 1 JRNL REVDAT 1 04-JUN-14 4LUT 0 JRNL AUTH O.A.ASOJO,S.K.NELSON,S.MOOTIEN,Y.LEE,W.C.REZENDE,D.A.HYMAN, JRNL AUTH 2 M.M.MATSUMOTO,S.REILING,A.KELLEHER,M.LEDIZET,R.A.KOSKI, JRNL AUTH 3 K.G.ANTHONY JRNL TITL STRUCTURAL AND BIOCHEMICAL ANALYSES OF ALANINE RACEMASE FROM JRNL TITL 2 THE MULTIDRUG-RESISTANT CLOSTRIDIUM DIFFICILE STRAIN 630. JRNL REF ACTA CRYSTALLOGR.,SECT.D V. 70 1922 2014 JRNL REFN ISSN 0907-4449 JRNL PMID 25004969 JRNL DOI 10.1107/S1399004714009419 REMARK 2 REMARK 2 RESOLUTION. 2.26 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.7.0032 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.26 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 45.62 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 64.0 REMARK 3 NUMBER OF REFLECTIONS : 33808 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.212 REMARK 3 R VALUE (WORKING SET) : 0.210 REMARK 3 FREE R VALUE : 0.248 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1785 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.26 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.32 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2104 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 54.48 REMARK 3 BIN R VALUE (WORKING SET) : 0.3020 REMARK 3 BIN FREE R VALUE SET COUNT : 123 REMARK 3 BIN FREE R VALUE : 0.3140 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 5846 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 44 REMARK 3 SOLVENT ATOMS : 171 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 33.35 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -1.64000 REMARK 3 B22 (A**2) : 1.24000 REMARK 3 B33 (A**2) : 0.41000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.468 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.284 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.168 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 14.208 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.939 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.915 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 6118 ; 0.008 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 6038 ; 0.003 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 8257 ; 1.352 ; 1.987 REMARK 3 BOND ANGLES OTHERS (DEGREES): 13926 ; 0.977 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 756 ; 5.889 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 271 ;37.631 ;25.424 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 1159 ;16.348 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 29 ;17.405 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 952 ; 0.071 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 6814 ; 0.005 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 1269 ; 0.002 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 3039 ; 1.575 ; 1.809 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 3039 ; 1.571 ; 1.809 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3790 ; 2.473 ; 2.707 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 3079 ; 2.227 ; 2.054 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 9556 ; 6.404 ;21.444 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NCS TYPE: LOCAL REMARK 3 NUMBER OF DIFFERENT NCS PAIRS : 1 REMARK 3 GROUP CHAIN1 RANGE CHAIN2 RANGE COUNT RMS WEIGHT REMARK 3 1 A 3 384 B 3 384 23598 0.11 0.05 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 3 A 384 REMARK 3 ORIGIN FOR THE GROUP (A): 25.3410 39.3940 92.5280 REMARK 3 T TENSOR REMARK 3 T11: 0.0484 T22: 0.0115 REMARK 3 T33: 0.1148 T12: -0.0061 REMARK 3 T13: 0.0013 T23: -0.0195 REMARK 3 L TENSOR REMARK 3 L11: 0.8075 L22: 1.2733 REMARK 3 L33: 1.2583 L12: -0.2922 REMARK 3 L13: -0.1618 L23: -0.1950 REMARK 3 S TENSOR REMARK 3 S11: 0.0130 S12: -0.0863 S13: 0.0822 REMARK 3 S21: 0.0533 S22: 0.0063 S23: 0.0922 REMARK 3 S31: -0.1698 S32: 0.0139 S33: -0.0193 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 3 B 384 REMARK 3 ORIGIN FOR THE GROUP (A): 45.6920 22.1080 93.3620 REMARK 3 T TENSOR REMARK 3 T11: 0.0608 T22: 0.0215 REMARK 3 T33: 0.1178 T12: 0.0125 REMARK 3 T13: 0.0114 T23: 0.0206 REMARK 3 L TENSOR REMARK 3 L11: 1.1953 L22: 1.2949 REMARK 3 L33: 1.0684 L12: 0.0446 REMARK 3 L13: -0.0549 L23: -0.1693 REMARK 3 S TENSOR REMARK 3 S11: -0.0132 S12: -0.0950 S13: -0.0146 REMARK 3 S21: 0.1026 S22: 0.0059 S23: -0.1030 REMARK 3 S31: 0.0605 S32: 0.1051 S33: 0.0073 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.00 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 4LUT COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 29-JUL-13. REMARK 100 THE DEPOSITION ID IS D_1000081113. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 05-OCT-12 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU FR-E+ SUPERBRIGHT REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.514179 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : RIGAKU RAXIS HTC REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 35794 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.260 REMARK 200 RESOLUTION RANGE LOW (A) : 53.720 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 64.8 REMARK 200 DATA REDUNDANCY : 5.700 REMARK 200 R MERGE (I) : 0.13000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 8.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.26 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.33 REMARK 200 COMPLETENESS FOR SHELL (%) : 55.5 REMARK 200 DATA REDUNDANCY IN SHELL : 5.50 REMARK 200 R MERGE FOR SHELL (I) : 0.89300 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.800 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 4LUS REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 63.42 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.36 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 20MG/ML PROTEIN IN 50MM TRIS PH 8.0, REMARK 280 0.02% V/V BME, 10 MICROMOLAR PYRIDOXAL-L-PHOSPHATE, REMARK 280 CRYSTALLIZATION BUFFER 0.1M CYCLOSERINE, 0.2M SODIUM FORMATE, 20% REMARK 280 W/V PEG3350, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 298K, REMARK 280 PH 7.5 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 28.92000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 72.44500 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 69.48500 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 72.44500 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 28.92000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 69.48500 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 7070 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 28170 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -22.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 GLN A 2 REMARK 465 SER A 133 REMARK 465 GLY A 134 REMARK 465 MET A 135 REMARK 465 THR A 136 REMARK 465 ARG A 137 REMARK 465 ILE A 138 REMARK 465 GLY A 139 REMARK 465 LYS A 385 REMARK 465 MET B 1 REMARK 465 GLN B 2 REMARK 465 VAL B 260 REMARK 465 GLU B 261 REMARK 465 PRO B 262 REMARK 465 GLY B 263 REMARK 465 VAL B 264 REMARK 465 GLY B 265 REMARK 465 ILE B 266 REMARK 465 SER B 267 REMARK 465 TYR B 268 REMARK 465 GLY B 269 REMARK 465 LEU B 270 REMARK 465 LYS B 271 REMARK 465 TYR B 272 REMARK 465 THR B 273 REMARK 465 THR B 274 REMARK 465 THR B 275 REMARK 465 GLY B 276 REMARK 465 LYS B 277 REMARK 465 LYS B 385 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OD1 ASN B 115 O GLU B 157 2.14 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 GLU A 157 N - CA - C ANGL. DEV. = 24.2 DEGREES REMARK 500 TYR A 158 N - CA - CB ANGL. DEV. = -15.9 DEGREES REMARK 500 ARG A 223 NE - CZ - NH1 ANGL. DEV. = 3.3 DEGREES REMARK 500 ARG A 245 NE - CZ - NH1 ANGL. DEV. = 5.0 DEGREES REMARK 500 ARG A 245 NE - CZ - NH2 ANGL. DEV. = -5.0 DEGREES REMARK 500 ARG B 223 NE - CZ - NH1 ANGL. DEV. = 3.9 DEGREES REMARK 500 ARG B 223 NE - CZ - NH2 ANGL. DEV. = -3.6 DEGREES REMARK 500 ARG B 245 NE - CZ - NH1 ANGL. DEV. = 3.7 DEGREES REMARK 500 ARG B 245 NE - CZ - NH2 ANGL. DEV. = -3.4 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS A 58 111.14 68.64 REMARK 500 LEU A 156 109.78 -39.35 REMARK 500 GLU A 157 -48.20 -26.09 REMARK 500 GLU A 177 -54.73 -28.62 REMARK 500 ALA A 196 -155.92 -74.12 REMARK 500 VAL A 205 -28.35 -143.07 REMARK 500 LEU A 219 -136.95 51.50 REMARK 500 ASP A 240 -9.59 -59.95 REMARK 500 SER A 267 179.27 73.68 REMARK 500 THR A 353 -155.36 -128.92 REMARK 500 GLU A 372 116.58 -164.51 REMARK 500 GLN A 378 139.41 -172.51 REMARK 500 LYS B 58 107.84 68.96 REMARK 500 THR B 136 31.50 70.72 REMARK 500 ARG B 137 -77.94 -105.52 REMARK 500 VAL B 205 -28.82 -143.45 REMARK 500 LEU B 219 -138.12 50.33 REMARK 500 THR B 353 -155.95 -127.91 REMARK 500 GLU B 372 116.45 -165.77 REMARK 500 GLN B 378 139.31 -172.38 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE DCS A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE DCS B 401 DBREF 4LUT A 1 385 UNP Q180W0 Q180W0_CLOD6 1 385 DBREF 4LUT B 1 385 UNP Q180W0 Q180W0_CLOD6 1 385 SEQRES 1 A 385 MET GLN LYS ILE THR VAL PRO THR TRP ALA GLU ILE ASN SEQRES 2 A 385 LEU ASP ASN LEU ARG PHE ASN LEU ASN ASN ILE LYS ASN SEQRES 3 A 385 LEU LEU GLU GLU ASP ILE LYS ILE CYS GLY VAL ILE LYS SEQRES 4 A 385 ALA ASP ALA TYR GLY HIS GLY ALA VAL GLU VAL ALA LYS SEQRES 5 A 385 LEU LEU GLU LYS GLU LYS VAL ASP TYR LEU ALA VAL ALA SEQRES 6 A 385 ARG THR ALA GLU GLY ILE GLU LEU ARG GLN ASN GLY ILE SEQRES 7 A 385 THR LEU PRO ILE LEU ASN LEU GLY TYR THR PRO ASP GLU SEQRES 8 A 385 ALA PHE GLU ASP SER ILE LYS ASN LYS ILE THR MET THR SEQRES 9 A 385 VAL TYR SER LEU GLU THR ALA GLN LYS ILE ASN GLU ILE SEQRES 10 A 385 ALA LYS SER LEU GLY GLU LYS ALA CYS VAL HIS VAL LYS SEQRES 11 A 385 ILE ASP SER GLY MET THR ARG ILE GLY PHE GLN PRO ASN SEQRES 12 A 385 GLU GLU SER VAL GLN GLU ILE ILE GLU LEU ASN LYS LEU SEQRES 13 A 385 GLU TYR ILE ASP LEU GLU GLY MET PHE THR HIS PHE ALA SEQRES 14 A 385 THR ALA ASP GLU VAL SER LYS GLU TYR THR TYR LYS GLN SEQRES 15 A 385 ALA ASN ASN TYR LYS PHE MET SER ASP LYS LEU ASP GLU SEQRES 16 A 385 ALA GLY VAL LYS ILE ALA ILE LYS HIS VAL SER ASN SER SEQRES 17 A 385 ALA ALA ILE MET ASP CYS PRO ASP LEU ARG LEU ASN MET SEQRES 18 A 385 VAL ARG ALA GLY ILE ILE LEU TYR GLY HIS TYR PRO SER SEQRES 19 A 385 ASP ASP VAL PHE LYS ASP ARG LEU GLU LEU ARG PRO ALA SEQRES 20 A 385 MET LYS LEU LYS SER LYS ILE GLY HIS ILE LYS GLN VAL SEQRES 21 A 385 GLU PRO GLY VAL GLY ILE SER TYR GLY LEU LYS TYR THR SEQRES 22 A 385 THR THR GLY LYS GLU THR ILE ALA THR VAL PRO ILE GLY SEQRES 23 A 385 TYR ALA ASP GLY PHE THR ARG ILE GLN LYS ASN PRO LYS SEQRES 24 A 385 VAL LEU ILE LYS GLY GLU VAL PHE ASP VAL VAL GLY ARG SEQRES 25 A 385 ILE CYS MET ASP GLN ILE MET VAL ARG ILE ASP LYS ASP SEQRES 26 A 385 ILE ASP ILE LYS VAL GLY ASP GLU VAL ILE LEU PHE GLY SEQRES 27 A 385 GLU GLY GLU VAL THR ALA GLU ARG ILE ALA LYS ASP LEU SEQRES 28 A 385 GLY THR ILE ASN TYR GLU VAL LEU CYS MET ILE SER ARG SEQRES 29 A 385 ARG VAL ASP ARG VAL TYR MET GLU ASN ASN GLU LEU VAL SEQRES 30 A 385 GLN ILE ASN SER TYR LEU LEU LYS SEQRES 1 B 385 MET GLN LYS ILE THR VAL PRO THR TRP ALA GLU ILE ASN SEQRES 2 B 385 LEU ASP ASN LEU ARG PHE ASN LEU ASN ASN ILE LYS ASN SEQRES 3 B 385 LEU LEU GLU GLU ASP ILE LYS ILE CYS GLY VAL ILE LYS SEQRES 4 B 385 ALA ASP ALA TYR GLY HIS GLY ALA VAL GLU VAL ALA LYS SEQRES 5 B 385 LEU LEU GLU LYS GLU LYS VAL ASP TYR LEU ALA VAL ALA SEQRES 6 B 385 ARG THR ALA GLU GLY ILE GLU LEU ARG GLN ASN GLY ILE SEQRES 7 B 385 THR LEU PRO ILE LEU ASN LEU GLY TYR THR PRO ASP GLU SEQRES 8 B 385 ALA PHE GLU ASP SER ILE LYS ASN LYS ILE THR MET THR SEQRES 9 B 385 VAL TYR SER LEU GLU THR ALA GLN LYS ILE ASN GLU ILE SEQRES 10 B 385 ALA LYS SER LEU GLY GLU LYS ALA CYS VAL HIS VAL KCX SEQRES 11 B 385 ILE ASP SER GLY MET THR ARG ILE GLY PHE GLN PRO ASN SEQRES 12 B 385 GLU GLU SER VAL GLN GLU ILE ILE GLU LEU ASN LYS LEU SEQRES 13 B 385 GLU TYR ILE ASP LEU GLU GLY MET PHE THR HIS PHE ALA SEQRES 14 B 385 THR ALA ASP GLU VAL SER LYS GLU TYR THR TYR LYS GLN SEQRES 15 B 385 ALA ASN ASN TYR LYS PHE MET SER ASP LYS LEU ASP GLU SEQRES 16 B 385 ALA GLY VAL LYS ILE ALA ILE LYS HIS VAL SER ASN SER SEQRES 17 B 385 ALA ALA ILE MET ASP CYS PRO ASP LEU ARG LEU ASN MET SEQRES 18 B 385 VAL ARG ALA GLY ILE ILE LEU TYR GLY HIS TYR PRO SER SEQRES 19 B 385 ASP ASP VAL PHE LYS ASP ARG LEU GLU LEU ARG PRO ALA SEQRES 20 B 385 MET LYS LEU LYS SER LYS ILE GLY HIS ILE LYS GLN VAL SEQRES 21 B 385 GLU PRO GLY VAL GLY ILE SER TYR GLY LEU LYS TYR THR SEQRES 22 B 385 THR THR GLY LYS GLU THR ILE ALA THR VAL PRO ILE GLY SEQRES 23 B 385 TYR ALA ASP GLY PHE THR ARG ILE GLN LYS ASN PRO LYS SEQRES 24 B 385 VAL LEU ILE LYS GLY GLU VAL PHE ASP VAL VAL GLY ARG SEQRES 25 B 385 ILE CYS MET ASP GLN ILE MET VAL ARG ILE ASP LYS ASP SEQRES 26 B 385 ILE ASP ILE LYS VAL GLY ASP GLU VAL ILE LEU PHE GLY SEQRES 27 B 385 GLU GLY GLU VAL THR ALA GLU ARG ILE ALA LYS ASP LEU SEQRES 28 B 385 GLY THR ILE ASN TYR GLU VAL LEU CYS MET ILE SER ARG SEQRES 29 B 385 ARG VAL ASP ARG VAL TYR MET GLU ASN ASN GLU LEU VAL SEQRES 30 B 385 GLN ILE ASN SER TYR LEU LEU LYS MODRES 4LUT KCX B 130 LYS LYSINE NZ-CARBOXYLIC ACID HET KCX B 130 12 HET DCS A 401 22 HET DCS B 401 22 HETNAM KCX LYSINE NZ-CARBOXYLIC ACID HETNAM DCS D-[3-HYDROXY-2-METHYL-5-PHOSPHONOOXYMETHYL-PYRIDIN-4- HETNAM 2 DCS YLMETHYL]-N,O-CYCLOSERYLAMIDE HETSYN DCS D-PYRIDOXYL-N,O-CYCLOSERYLAMIDE-5-MONOPHOSPHATE FORMUL 2 KCX C7 H14 N2 O4 FORMUL 3 DCS 2(C11 H16 N3 O7 P) FORMUL 5 HOH *171(H2 O) HELIX 1 1 LEU A 14 LEU A 28 1 15 HELIX 2 2 ILE A 38 GLY A 44 1 7 HELIX 3 3 GLY A 46 LYS A 58 1 13 HELIX 4 4 ARG A 66 ASN A 76 1 11 HELIX 5 5 PRO A 89 GLU A 91 5 3 HELIX 6 6 ALA A 92 ASN A 99 1 8 HELIX 7 7 SER A 107 GLY A 122 1 16 HELIX 8 8 ASN A 143 LEU A 156 1 14 HELIX 9 9 LYS A 176 ALA A 196 1 21 HELIX 10 10 ASN A 207 CYS A 214 1 8 HELIX 11 11 GLY A 225 GLY A 230 5 6 HELIX 12 12 PHE A 238 LEU A 242 5 5 HELIX 13 13 SER A 267 LYS A 271 5 5 HELIX 14 14 GLY A 286 GLY A 290 5 5 HELIX 15 15 THR A 343 GLY A 352 1 10 HELIX 16 16 ILE A 354 MET A 361 1 8 HELIX 17 17 LEU B 14 LEU B 28 1 15 HELIX 18 18 ILE B 38 GLY B 44 1 7 HELIX 19 19 GLY B 46 LYS B 58 1 13 HELIX 20 20 ARG B 66 ASN B 76 1 11 HELIX 21 21 PRO B 89 GLU B 91 5 3 HELIX 22 22 ALA B 92 ASN B 99 1 8 HELIX 23 23 SER B 107 GLY B 122 1 16 HELIX 24 24 ASN B 143 LYS B 155 1 13 HELIX 25 25 LYS B 176 ALA B 196 1 21 HELIX 26 26 ASN B 207 CYS B 214 1 8 HELIX 27 27 GLY B 225 GLY B 230 5 6 HELIX 28 28 PHE B 238 LEU B 242 5 5 HELIX 29 29 GLY B 286 GLY B 290 5 5 HELIX 30 30 THR B 343 GLY B 352 1 10 HELIX 31 31 ILE B 354 MET B 361 1 8 SHEET 1 A 5 GLU A 333 PHE A 337 0 SHEET 2 A 5 MET A 248 LYS A 253 -1 N LEU A 250 O LEU A 336 SHEET 3 A 5 THR A 8 ASN A 13 -1 N GLU A 11 O LYS A 249 SHEET 4 A 5 ASP A 367 GLU A 372 1 O VAL A 369 N ILE A 12 SHEET 5 A 5 GLU A 375 ASN A 380 -1 O ASN A 380 N ARG A 368 SHEET 1 B 9 LYS A 33 VAL A 37 0 SHEET 2 B 9 TYR A 61 VAL A 64 1 O TYR A 61 N GLY A 36 SHEET 3 B 9 ILE A 82 ASN A 84 1 O LEU A 83 N LEU A 62 SHEET 4 B 9 ILE A 101 VAL A 105 1 O THR A 102 N ILE A 82 SHEET 5 B 9 ALA A 125 LYS A 130 1 O HIS A 128 N MET A 103 SHEET 6 B 9 ILE A 159 PHE A 165 1 O ASP A 160 N ALA A 125 SHEET 7 B 9 ILE A 202 HIS A 204 1 O ILE A 202 N MET A 164 SHEET 8 B 9 MET A 221 ALA A 224 1 N MET A 221 O LYS A 203 SHEET 9 B 9 LYS A 33 VAL A 37 1 N VAL A 37 O ALA A 224 SHEET 1 C 5 HIS A 256 VAL A 260 0 SHEET 2 C 5 GLU A 278 VAL A 283 -1 O GLU A 278 N VAL A 260 SHEET 3 C 5 ILE A 318 ILE A 322 -1 O VAL A 320 N ALA A 281 SHEET 4 C 5 GLU A 305 VAL A 310 -1 N VAL A 310 O MET A 319 SHEET 5 C 5 LYS A 299 ILE A 302 -1 N ILE A 302 O GLU A 305 SHEET 1 D 2 GLY A 265 ILE A 266 0 SHEET 2 D 2 TYR A 272 THR A 273 -1 O TYR A 272 N ILE A 266 SHEET 1 E 5 GLU B 333 PHE B 337 0 SHEET 2 E 5 MET B 248 LYS B 253 -1 N SER B 252 O VAL B 334 SHEET 3 E 5 THR B 8 ASN B 13 -1 N GLU B 11 O LYS B 249 SHEET 4 E 5 ASP B 367 GLU B 372 1 O VAL B 369 N ILE B 12 SHEET 5 E 5 GLU B 375 ASN B 380 -1 O ASN B 380 N ARG B 368 SHEET 1 F 9 LYS B 33 VAL B 37 0 SHEET 2 F 9 TYR B 61 VAL B 64 1 O TYR B 61 N GLY B 36 SHEET 3 F 9 ILE B 82 ASN B 84 1 O LEU B 83 N LEU B 62 SHEET 4 F 9 ILE B 101 VAL B 105 1 O THR B 102 N ILE B 82 SHEET 5 F 9 ALA B 125 KCX B 130 1 O HIS B 128 N MET B 103 SHEET 6 F 9 ILE B 159 PHE B 165 1 O ASP B 160 N ALA B 125 SHEET 7 F 9 ILE B 202 HIS B 204 1 O ILE B 202 N GLU B 162 SHEET 8 F 9 MET B 221 ALA B 224 1 N MET B 221 O LYS B 203 SHEET 9 F 9 LYS B 33 VAL B 37 1 N VAL B 37 O ALA B 224 SHEET 1 G 5 HIS B 256 LYS B 258 0 SHEET 2 G 5 THR B 279 VAL B 283 -1 O THR B 282 N HIS B 256 SHEET 3 G 5 ILE B 318 ILE B 322 -1 O VAL B 320 N ALA B 281 SHEET 4 G 5 GLU B 305 VAL B 310 -1 N VAL B 310 O MET B 319 SHEET 5 G 5 LYS B 299 ILE B 302 -1 N ILE B 302 O GLU B 305 LINK C VAL B 129 N KCX B 130 1555 1555 1.33 LINK C KCX B 130 N ILE B 131 1555 1555 1.34 SITE 1 AC1 12 LYS A 39 TYR A 43 HIS A 167 SER A 208 SITE 2 AC1 12 ARG A 223 GLY A 225 ILE A 226 TYR A 356 SITE 3 AC1 12 HOH A 569 TYR B 287 CYS B 314 MET B 315 SITE 1 AC2 14 TYR A 268 TYR A 287 CYS A 314 MET A 315 SITE 2 AC2 14 LYS B 39 TYR B 43 ARG B 137 HIS B 167 SITE 3 AC2 14 SER B 208 ARG B 223 GLY B 225 ILE B 226 SITE 4 AC2 14 TYR B 356 HOH B 541 CRYST1 57.840 138.970 144.890 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.017289 0.000000 0.000000 0.00000 SCALE2 0.000000 0.007196 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006902 0.00000