HEADER HYDROLASE/HYDROLASE INHIBITOR 25-JUL-13 4LV0 TITLE AMPC BETA-LACTAMASE IN COMPLEX WITH M-AMINOPHENYL BORONIC ACID COMPND MOL_ID: 1; COMPND 2 MOLECULE: BETA-LACTAMASE; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: CEPHALOSPORINASE; COMPND 5 EC: 3.5.2.6; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI; SOURCE 3 ORGANISM_TAXID: 83333; SOURCE 4 STRAIN: K12; SOURCE 5 GENE: AMPA, AMPC, B4150, JW4111; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: JM109; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: POGO295 KEYWDS AMPC BETA-LACTAMASE, CLASS C, HYDROLASE, BORONIC ACID, COVALENT KEYWDS 2 INHIBITOR, HYDROLASE-HYDROLASE INHIBITOR COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR N.LONDON,O.EIDAM,B.K.SHOICHET REVDAT 4 20-SEP-23 4LV0 1 REMARK LINK REVDAT 3 26-NOV-14 4LV0 1 JRNL REVDAT 2 05-NOV-14 4LV0 1 JRNL REVDAT 1 30-JUL-14 4LV0 0 JRNL AUTH N.LONDON,R.M.MILLER,S.KRISHNAN,K.UCHIDA,J.J.IRWIN,O.EIDAM, JRNL AUTH 2 L.GIBOLD,P.CIMERMANCIC,R.BONNET,B.K.SHOICHET,J.TAUNTON JRNL TITL COVALENT DOCKING OF LARGE LIBRARIES FOR THE DISCOVERY OF JRNL TITL 2 CHEMICAL PROBES. JRNL REF NAT.CHEM.BIOL. V. 10 1066 2014 JRNL REFN ISSN 1552-4450 JRNL PMID 25344815 JRNL DOI 10.1038/NCHEMBIO.1666 REMARK 2 REMARK 2 RESOLUTION. 1.65 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.8_1069 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.65 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 45.67 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.990 REMARK 3 COMPLETENESS FOR RANGE (%) : 96.7 REMARK 3 NUMBER OF REFLECTIONS : 91645 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.165 REMARK 3 R VALUE (WORKING SET) : 0.164 REMARK 3 FREE R VALUE : 0.194 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 3.680 REMARK 3 FREE R VALUE TEST SET COUNT : 3372 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 45.6720 - 4.7640 0.96 3775 140 0.1600 0.1858 REMARK 3 2 4.7640 - 3.7819 0.98 3745 172 0.1261 0.1572 REMARK 3 3 3.7819 - 3.3040 0.97 3714 134 0.1381 0.1535 REMARK 3 4 3.3040 - 3.0020 0.98 3726 157 0.1580 0.1784 REMARK 3 5 3.0020 - 2.7868 0.98 3713 162 0.1581 0.1928 REMARK 3 6 2.7868 - 2.6226 0.98 3687 155 0.1598 0.1721 REMARK 3 7 2.6226 - 2.4912 0.98 3738 144 0.1576 0.2035 REMARK 3 8 2.4912 - 2.3828 0.98 3746 142 0.1553 0.1814 REMARK 3 9 2.3828 - 2.2911 0.98 3720 135 0.1561 0.2194 REMARK 3 10 2.2911 - 2.2120 0.92 3506 113 0.1959 0.2498 REMARK 3 11 2.2120 - 2.1428 0.98 3701 165 0.1599 0.1979 REMARK 3 12 2.1428 - 2.0816 0.98 3691 161 0.1610 0.2091 REMARK 3 13 2.0816 - 2.0268 0.98 3719 140 0.1638 0.2005 REMARK 3 14 2.0268 - 1.9773 0.97 3698 132 0.1756 0.2245 REMARK 3 15 1.9773 - 1.9324 0.97 3694 137 0.1865 0.2045 REMARK 3 16 1.9324 - 1.8913 0.95 3597 106 0.2592 0.2988 REMARK 3 17 1.8913 - 1.8534 0.97 3711 112 0.1990 0.2216 REMARK 3 18 1.8534 - 1.8185 0.97 3656 147 0.1982 0.2337 REMARK 3 19 1.8185 - 1.7860 0.96 3680 140 0.2012 0.2471 REMARK 3 20 1.7860 - 1.7557 0.97 3662 143 0.2172 0.2650 REMARK 3 21 1.7557 - 1.7274 0.96 3618 119 0.2219 0.2162 REMARK 3 22 1.7274 - 1.7008 0.96 3696 121 0.2232 0.3004 REMARK 3 23 1.7008 - 1.6758 0.96 3615 151 0.2422 0.2759 REMARK 3 24 1.6758 - 1.6520 0.93 3465 144 0.2550 0.2967 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.180 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 20.990 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 20.84 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 21.95 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.014 5751 REMARK 3 ANGLE : 1.513 7887 REMARK 3 CHIRALITY : 0.104 862 REMARK 3 PLANARITY : 0.008 1020 REMARK 3 DIHEDRAL : 13.246 2043 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 6 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: (CHAIN A AND RESID 4:83) REMARK 3 ORIGIN FOR THE GROUP (A): 23.4166 -9.5205 23.7910 REMARK 3 T TENSOR REMARK 3 T11: 0.1623 T22: 0.0966 REMARK 3 T33: 0.1035 T12: -0.0512 REMARK 3 T13: 0.0158 T23: -0.0109 REMARK 3 L TENSOR REMARK 3 L11: 0.9068 L22: 1.0904 REMARK 3 L33: 0.9279 L12: 0.4649 REMARK 3 L13: 0.0716 L23: 0.1590 REMARK 3 S TENSOR REMARK 3 S11: 0.0257 S12: -0.1468 S13: -0.0461 REMARK 3 S21: 0.1883 S22: -0.0627 S23: 0.0756 REMARK 3 S31: 0.2857 S32: -0.1242 S33: 0.0059 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: (CHAIN A AND RESID 84:172) REMARK 3 ORIGIN FOR THE GROUP (A): 38.8751 10.8892 7.1611 REMARK 3 T TENSOR REMARK 3 T11: 0.1382 T22: 0.1066 REMARK 3 T33: 0.1193 T12: -0.0392 REMARK 3 T13: 0.0116 T23: 0.0076 REMARK 3 L TENSOR REMARK 3 L11: 0.8379 L22: 1.5164 REMARK 3 L33: 1.0635 L12: 0.0751 REMARK 3 L13: -0.2157 L23: -0.2390 REMARK 3 S TENSOR REMARK 3 S11: -0.0416 S12: 0.1368 S13: 0.1240 REMARK 3 S21: -0.2425 S22: 0.0109 S23: -0.0851 REMARK 3 S31: -0.0553 S32: 0.0743 S33: 0.0129 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: (CHAIN A AND RESID 173:361) REMARK 3 ORIGIN FOR THE GROUP (A): 31.3782 -2.5222 22.2399 REMARK 3 T TENSOR REMARK 3 T11: 0.1083 T22: 0.0718 REMARK 3 T33: 0.0906 T12: -0.0090 REMARK 3 T13: -0.0029 T23: 0.0022 REMARK 3 L TENSOR REMARK 3 L11: 1.3902 L22: 1.3757 REMARK 3 L33: 1.0919 L12: 0.7843 REMARK 3 L13: -0.0136 L23: 0.0952 REMARK 3 S TENSOR REMARK 3 S11: 0.0515 S12: -0.1465 S13: -0.0024 REMARK 3 S21: 0.1780 S22: -0.0712 S23: -0.0462 REMARK 3 S31: 0.0779 S32: 0.0293 S33: 0.0185 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: (CHAIN B AND RESID 4:83) REMARK 3 ORIGIN FOR THE GROUP (A): 79.5643 -10.9000 23.7984 REMARK 3 T TENSOR REMARK 3 T11: 0.1706 T22: 0.3752 REMARK 3 T33: 0.1760 T12: 0.0764 REMARK 3 T13: 0.0038 T23: -0.0215 REMARK 3 L TENSOR REMARK 3 L11: 0.8404 L22: 1.0098 REMARK 3 L33: 1.0019 L12: -0.1923 REMARK 3 L13: 0.2495 L23: -0.0817 REMARK 3 S TENSOR REMARK 3 S11: -0.0755 S12: -0.0196 S13: -0.1512 REMARK 3 S21: 0.0043 S22: 0.1304 S23: -0.1156 REMARK 3 S31: 0.3555 S32: 0.5877 S33: -0.0387 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: (CHAIN B AND RESID 84:131) REMARK 3 ORIGIN FOR THE GROUP (A): 63.9306 14.1891 36.8601 REMARK 3 T TENSOR REMARK 3 T11: 0.1688 T22: 0.1677 REMARK 3 T33: 0.1334 T12: -0.0655 REMARK 3 T13: 0.0009 T23: -0.0131 REMARK 3 L TENSOR REMARK 3 L11: 0.4783 L22: 1.3409 REMARK 3 L33: 1.0865 L12: 0.0175 REMARK 3 L13: -0.2091 L23: 0.2232 REMARK 3 S TENSOR REMARK 3 S11: -0.0126 S12: -0.1285 S13: 0.1048 REMARK 3 S21: 0.2415 S22: 0.0569 S23: 0.0303 REMARK 3 S31: -0.1716 S32: 0.0897 S33: -0.0439 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: (CHAIN B AND RESID 132:361) REMARK 3 ORIGIN FOR THE GROUP (A): 70.9815 -0.7437 26.2660 REMARK 3 T TENSOR REMARK 3 T11: 0.0740 T22: 0.1916 REMARK 3 T33: 0.1323 T12: -0.0549 REMARK 3 T13: -0.0027 T23: -0.0066 REMARK 3 L TENSOR REMARK 3 L11: 0.8171 L22: 1.3712 REMARK 3 L33: 1.7516 L12: -0.5820 REMARK 3 L13: -0.2409 L23: 0.0899 REMARK 3 S TENSOR REMARK 3 S11: -0.0409 S12: -0.0369 S13: -0.0629 REMARK 3 S21: -0.0228 S22: 0.0889 S23: -0.0367 REMARK 3 S31: 0.0923 S32: 0.3183 S33: -0.0131 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4LV0 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 06-AUG-13. REMARK 100 THE DEPOSITION ID IS D_1000081120. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 31-OCT-12 REMARK 200 TEMPERATURE (KELVIN) : 80 REMARK 200 PH : 8.8 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ALS REMARK 200 BEAMLINE : 8.3.1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.11587 REMARK 200 MONOCHROMATOR : DOUBLE FLAT CRYSTAL, SI(111) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XSCALE REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 91648 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.650 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 96.5 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : 0.03100 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 20.5400 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.65 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.70 REMARK 200 COMPLETENESS FOR SHELL (%) : 94.1 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.51900 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.100 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: PDB ENTRY 1KE4 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 51.54 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.54 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 1.7 M POTASSIUM PHOSPHATE, PH 8.8, REMARK 280 VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 59.23000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 38.73000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 59.23000 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 38.73000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLN A 22 CG CD OE1 NE2 REMARK 470 LYS A 24 CD CE NZ REMARK 470 LYS A 37 CG CD CE NZ REMARK 470 LYS A 51 NZ REMARK 470 LYS A 99 CG CD CE NZ REMARK 470 LYS A 126 NZ REMARK 470 LYS A 183 NZ REMARK 470 GLU A 205 CD OE1 OE2 REMARK 470 LYS A 207 CD CE NZ REMARK 470 LYS A 239 CE NZ REMARK 470 LYS A 246 CG CD CE NZ REMARK 470 LYS A 290 CD CE NZ REMARK 470 LYS A 299 CD CE NZ REMARK 470 LYS B 24 CD CE NZ REMARK 470 LYS B 37 CG CD CE NZ REMARK 470 LYS B 50 CG CD CE NZ REMARK 470 GLN B 52 CD OE1 NE2 REMARK 470 GLN B 57 CD OE1 NE2 REMARK 470 LYS B 126 CG CD CE NZ REMARK 470 LYS B 164 NZ REMARK 470 ARG B 204 CZ NH1 NH2 REMARK 470 GLU B 205 CG CD OE1 OE2 REMARK 470 LYS B 207 CG CD CE NZ REMARK 470 LYS B 246 CG CD CE NZ REMARK 470 LYS B 290 NZ REMARK 470 LYS B 299 CG CD CE NZ REMARK 470 ARG B 309 O REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OD2 ASP B 87 OH TYR B 92 2.02 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 154 -67.81 -90.59 REMARK 500 VAL A 178 -58.09 -124.97 REMARK 500 TYR A 221 19.90 -161.99 REMARK 500 ASN A 341 46.36 -96.91 REMARK 500 LYS B 126 -62.01 -121.88 REMARK 500 VAL B 178 -61.16 -123.38 REMARK 500 TYR B 221 24.06 -162.92 REMARK 500 ASN B 341 44.96 -100.09 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE APB A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PO4 A 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE APB B 401 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4LV1 RELATED DB: PDB REMARK 900 RELATED ID: 4LV2 RELATED DB: PDB REMARK 900 RELATED ID: 4LV3 RELATED DB: PDB DBREF 4LV0 A 4 361 UNP P00811 AMPC_ECOLI 20 377 DBREF 4LV0 B 4 361 UNP P00811 AMPC_ECOLI 20 377 SEQRES 1 A 358 ALA PRO GLN GLN ILE ASN ASP ILE VAL HIS ARG THR ILE SEQRES 2 A 358 THR PRO LEU ILE GLU GLN GLN LYS ILE PRO GLY MET ALA SEQRES 3 A 358 VAL ALA VAL ILE TYR GLN GLY LYS PRO TYR TYR PHE THR SEQRES 4 A 358 TRP GLY TYR ALA ASP ILE ALA LYS LYS GLN PRO VAL THR SEQRES 5 A 358 GLN GLN THR LEU PHE GLU LEU GLY SER VAL SER LYS THR SEQRES 6 A 358 PHE THR GLY VAL LEU GLY GLY ASP ALA ILE ALA ARG GLY SEQRES 7 A 358 GLU ILE LYS LEU SER ASP PRO THR THR LYS TYR TRP PRO SEQRES 8 A 358 GLU LEU THR ALA LYS GLN TRP ASN GLY ILE THR LEU LEU SEQRES 9 A 358 HIS LEU ALA THR TYR THR ALA GLY GLY LEU PRO LEU GLN SEQRES 10 A 358 VAL PRO ASP GLU VAL LYS SER SER SER ASP LEU LEU ARG SEQRES 11 A 358 PHE TYR GLN ASN TRP GLN PRO ALA TRP ALA PRO GLY THR SEQRES 12 A 358 GLN ARG LEU TYR ALA ASN SER SER ILE GLY LEU PHE GLY SEQRES 13 A 358 ALA LEU ALA VAL LYS PRO SER GLY LEU SER PHE GLU GLN SEQRES 14 A 358 ALA MET GLN THR ARG VAL PHE GLN PRO LEU LYS LEU ASN SEQRES 15 A 358 HIS THR TRP ILE ASN VAL PRO PRO ALA GLU GLU LYS ASN SEQRES 16 A 358 TYR ALA TRP GLY TYR ARG GLU GLY LYS ALA VAL HIS VAL SEQRES 17 A 358 SER PRO GLY ALA LEU ASP ALA GLU ALA TYR GLY VAL LYS SEQRES 18 A 358 SER THR ILE GLU ASP MET ALA ARG TRP VAL GLN SER ASN SEQRES 19 A 358 LEU LYS PRO LEU ASP ILE ASN GLU LYS THR LEU GLN GLN SEQRES 20 A 358 GLY ILE GLN LEU ALA GLN SER ARG TYR TRP GLN THR GLY SEQRES 21 A 358 ASP MET TYR GLN GLY LEU GLY TRP GLU MET LEU ASP TRP SEQRES 22 A 358 PRO VAL ASN PRO ASP SER ILE ILE ASN GLY SER ASP ASN SEQRES 23 A 358 LYS ILE ALA LEU ALA ALA ARG PRO VAL LYS ALA ILE THR SEQRES 24 A 358 PRO PRO THR PRO ALA VAL ARG ALA SER TRP VAL HIS LYS SEQRES 25 A 358 THR GLY ALA THR GLY GLY PHE GLY SER TYR VAL ALA PHE SEQRES 26 A 358 ILE PRO GLU LYS GLU LEU GLY ILE VAL MET LEU ALA ASN SEQRES 27 A 358 LYS ASN TYR PRO ASN PRO ALA ARG VAL ASP ALA ALA TRP SEQRES 28 A 358 GLN ILE LEU ASN ALA LEU GLN SEQRES 1 B 358 ALA PRO GLN GLN ILE ASN ASP ILE VAL HIS ARG THR ILE SEQRES 2 B 358 THR PRO LEU ILE GLU GLN GLN LYS ILE PRO GLY MET ALA SEQRES 3 B 358 VAL ALA VAL ILE TYR GLN GLY LYS PRO TYR TYR PHE THR SEQRES 4 B 358 TRP GLY TYR ALA ASP ILE ALA LYS LYS GLN PRO VAL THR SEQRES 5 B 358 GLN GLN THR LEU PHE GLU LEU GLY SER VAL SER LYS THR SEQRES 6 B 358 PHE THR GLY VAL LEU GLY GLY ASP ALA ILE ALA ARG GLY SEQRES 7 B 358 GLU ILE LYS LEU SER ASP PRO THR THR LYS TYR TRP PRO SEQRES 8 B 358 GLU LEU THR ALA LYS GLN TRP ASN GLY ILE THR LEU LEU SEQRES 9 B 358 HIS LEU ALA THR TYR THR ALA GLY GLY LEU PRO LEU GLN SEQRES 10 B 358 VAL PRO ASP GLU VAL LYS SER SER SER ASP LEU LEU ARG SEQRES 11 B 358 PHE TYR GLN ASN TRP GLN PRO ALA TRP ALA PRO GLY THR SEQRES 12 B 358 GLN ARG LEU TYR ALA ASN SER SER ILE GLY LEU PHE GLY SEQRES 13 B 358 ALA LEU ALA VAL LYS PRO SER GLY LEU SER PHE GLU GLN SEQRES 14 B 358 ALA MET GLN THR ARG VAL PHE GLN PRO LEU LYS LEU ASN SEQRES 15 B 358 HIS THR TRP ILE ASN VAL PRO PRO ALA GLU GLU LYS ASN SEQRES 16 B 358 TYR ALA TRP GLY TYR ARG GLU GLY LYS ALA VAL HIS VAL SEQRES 17 B 358 SER PRO GLY ALA LEU ASP ALA GLU ALA TYR GLY VAL LYS SEQRES 18 B 358 SER THR ILE GLU ASP MET ALA ARG TRP VAL GLN SER ASN SEQRES 19 B 358 LEU LYS PRO LEU ASP ILE ASN GLU LYS THR LEU GLN GLN SEQRES 20 B 358 GLY ILE GLN LEU ALA GLN SER ARG TYR TRP GLN THR GLY SEQRES 21 B 358 ASP MET TYR GLN GLY LEU GLY TRP GLU MET LEU ASP TRP SEQRES 22 B 358 PRO VAL ASN PRO ASP SER ILE ILE ASN GLY SER ASP ASN SEQRES 23 B 358 LYS ILE ALA LEU ALA ALA ARG PRO VAL LYS ALA ILE THR SEQRES 24 B 358 PRO PRO THR PRO ALA VAL ARG ALA SER TRP VAL HIS LYS SEQRES 25 B 358 THR GLY ALA THR GLY GLY PHE GLY SER TYR VAL ALA PHE SEQRES 26 B 358 ILE PRO GLU LYS GLU LEU GLY ILE VAL MET LEU ALA ASN SEQRES 27 B 358 LYS ASN TYR PRO ASN PRO ALA ARG VAL ASP ALA ALA TRP SEQRES 28 B 358 GLN ILE LEU ASN ALA LEU GLN MODRES 4LV0 SER B 64 SER 1.45 MODRES 4LV0 SER A 64 SER 1.45 HET APB A 401 10 HET PO4 A 402 5 HET APB B 401 10 HETNAM APB M-AMINOPHENYLBORONIC ACID HETNAM PO4 PHOSPHATE ION FORMUL 3 APB 2(C6 H8 B N O2) FORMUL 4 PO4 O4 P 3- FORMUL 6 HOH *802(H2 O) HELIX 1 1 PRO A 5 LYS A 24 1 20 HELIX 2 2 VAL A 65 ARG A 80 1 16 HELIX 3 3 PRO A 88 TRP A 93 1 6 HELIX 4 4 ALA A 98 ASN A 102 5 5 HELIX 5 5 THR A 105 THR A 111 1 7 HELIX 6 6 SER A 127 TRP A 138 1 12 HELIX 7 7 ALA A 151 VAL A 163 1 13 HELIX 8 8 SER A 169 VAL A 178 1 10 HELIX 9 9 PRO A 192 TYR A 199 5 8 HELIX 10 10 LEU A 216 TYR A 221 1 6 HELIX 11 11 THR A 226 LYS A 239 1 14 HELIX 12 12 PRO A 240 ILE A 243 5 4 HELIX 13 13 GLU A 245 GLN A 256 1 12 HELIX 14 14 ASN A 279 ASP A 288 1 10 HELIX 15 15 ASP A 288 LEU A 293 1 6 HELIX 16 16 PRO A 330 GLU A 333 5 4 HELIX 17 17 PRO A 345 GLN A 361 1 17 HELIX 18 18 PRO B 5 LYS B 24 1 20 HELIX 19 19 VAL B 65 ARG B 80 1 16 HELIX 20 20 PRO B 88 TRP B 93 1 6 HELIX 21 21 ALA B 98 ASN B 102 5 5 HELIX 22 22 THR B 105 THR B 111 1 7 HELIX 23 23 SER B 127 TRP B 138 1 12 HELIX 24 24 ALA B 151 VAL B 163 1 13 HELIX 25 25 SER B 169 VAL B 178 1 10 HELIX 26 26 PRO B 192 TYR B 199 5 8 HELIX 27 27 LEU B 216 GLY B 222 1 7 HELIX 28 28 THR B 226 LYS B 239 1 14 HELIX 29 29 PRO B 240 ILE B 243 5 4 HELIX 30 30 GLU B 245 GLN B 256 1 12 HELIX 31 31 ASN B 279 SER B 287 1 9 HELIX 32 32 ASP B 288 LEU B 293 1 6 HELIX 33 33 PRO B 330 GLU B 333 5 4 HELIX 34 34 PRO B 345 GLN B 361 1 17 SHEET 1 A10 GLN A 52 PRO A 53 0 SHEET 2 A10 LYS A 37 ASP A 47 -1 N ALA A 46 O GLN A 52 SHEET 3 A10 GLY A 27 TYR A 34 -1 N VAL A 30 O PHE A 41 SHEET 4 A10 LEU A 334 ALA A 340 -1 O LEU A 339 N ALA A 29 SHEET 5 A10 GLY A 323 ILE A 329 -1 N ILE A 329 O LEU A 334 SHEET 6 A10 SER A 311 ALA A 318 -1 N GLY A 317 O SER A 324 SHEET 7 A10 GLU A 272 ASP A 275 -1 N LEU A 274 O TRP A 312 SHEET 8 A10 MET A 265 GLN A 267 -1 N TYR A 266 O MET A 273 SHEET 9 A10 ARG A 258 THR A 262 -1 N TYR A 259 O GLN A 267 SHEET 10 A10 LYS A 299 THR A 305 -1 O THR A 305 N ARG A 258 SHEET 1 B 3 PHE A 60 GLU A 61 0 SHEET 2 B 3 LYS A 224 SER A 225 -1 O SER A 225 N PHE A 60 SHEET 3 B 3 THR A 187 TRP A 188 -1 N TRP A 188 O LYS A 224 SHEET 1 C 2 GLN A 147 ARG A 148 0 SHEET 2 C 2 ARG A 296 PRO A 297 -1 O ARG A 296 N ARG A 148 SHEET 1 D 2 GLY A 202 ARG A 204 0 SHEET 2 D 2 LYS A 207 VAL A 209 -1 O VAL A 209 N GLY A 202 SHEET 1 E10 GLN B 52 PRO B 53 0 SHEET 2 E10 LYS B 37 ASP B 47 -1 N ASP B 47 O GLN B 52 SHEET 3 E10 GLY B 27 TYR B 34 -1 N VAL B 30 O PHE B 41 SHEET 4 E10 LEU B 334 ALA B 340 -1 O LEU B 339 N ALA B 29 SHEET 5 E10 PHE B 322 ILE B 329 -1 N ILE B 329 O LEU B 334 SHEET 6 E10 SER B 311 THR B 319 -1 N GLY B 317 O SER B 324 SHEET 7 E10 GLU B 272 ASP B 275 -1 N GLU B 272 O HIS B 314 SHEET 8 E10 MET B 265 GLN B 267 -1 N TYR B 266 O MET B 273 SHEET 9 E10 ARG B 258 THR B 262 -1 N THR B 262 O MET B 265 SHEET 10 E10 LYS B 299 THR B 305 -1 O THR B 305 N ARG B 258 SHEET 1 F 2 PHE B 60 GLU B 61 0 SHEET 2 F 2 LYS B 224 SER B 225 -1 O SER B 225 N PHE B 60 SHEET 1 G 2 GLN B 147 ARG B 148 0 SHEET 2 G 2 ARG B 296 PRO B 297 -1 O ARG B 296 N ARG B 148 SHEET 1 H 2 GLY B 202 ARG B 204 0 SHEET 2 H 2 LYS B 207 VAL B 209 -1 O VAL B 209 N GLY B 202 LINK OG SER A 64 B APB A 401 1555 1555 1.47 LINK OG SER B 64 B APB B 401 1555 1555 1.43 CISPEP 1 TRP A 276 PRO A 277 0 3.31 CISPEP 2 THR A 302 PRO A 303 0 -4.31 CISPEP 3 TRP B 276 PRO B 277 0 1.68 CISPEP 4 THR B 302 PRO B 303 0 1.52 SITE 1 AC1 9 SER A 64 TYR A 150 ASN A 152 TYR A 221 SITE 2 AC1 9 ALA A 318 HOH A 651 HOH A 655 HOH A 740 SITE 3 AC1 9 HOH A 926 SITE 1 AC2 8 ARG A 133 HIS A 186 HOH A 587 HOH A 656 SITE 2 AC2 8 HOH A 804 HOH A 870 HOH A 880 LYS B 290 SITE 1 AC3 7 SER B 64 TYR B 150 ASN B 152 TYR B 221 SITE 2 AC3 7 ALA B 318 HOH B 613 HOH B 652 CRYST1 118.460 77.460 97.510 90.00 116.04 90.00 C 1 2 1 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.008442 0.000000 0.004125 0.00000 SCALE2 0.000000 0.012910 0.000000 0.00000 SCALE3 0.000000 0.000000 0.011414 0.00000