data_4LVK # _entry.id 4LVK # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.387 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 4LVK pdb_00004lvk 10.2210/pdb4lvk/pdb NDB NA2678 ? ? RCSB RCSB081139 ? ? WWPDB D_1000081139 ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2014-09-24 2 'Structure model' 1 1 2017-10-18 3 'Structure model' 1 2 2024-02-28 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Database references' 2 3 'Structure model' 'Data collection' 3 3 'Structure model' 'Database references' 4 3 'Structure model' 'Derived calculations' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 2 'Structure model' citation 2 2 'Structure model' citation_author 3 3 'Structure model' chem_comp_atom 4 3 'Structure model' chem_comp_bond 5 3 'Structure model' database_2 6 3 'Structure model' pdbx_struct_conn_angle 7 3 'Structure model' struct_conn 8 3 'Structure model' struct_site # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 2 'Structure model' '_citation.country' 2 2 'Structure model' '_citation.journal_abbrev' 3 2 'Structure model' '_citation.journal_id_ASTM' 4 2 'Structure model' '_citation.journal_id_CSD' 5 2 'Structure model' '_citation.journal_id_ISSN' 6 2 'Structure model' '_citation.journal_volume' 7 2 'Structure model' '_citation.page_first' 8 2 'Structure model' '_citation.page_last' 9 2 'Structure model' '_citation.pdbx_database_id_DOI' 10 2 'Structure model' '_citation.pdbx_database_id_PubMed' 11 2 'Structure model' '_citation.title' 12 2 'Structure model' '_citation.year' 13 3 'Structure model' '_database_2.pdbx_DOI' 14 3 'Structure model' '_database_2.pdbx_database_accession' 15 3 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_comp_id' 16 3 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_seq_id' 17 3 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_atom_id' 18 3 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_comp_id' 19 3 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_seq_id' 20 3 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_comp_id' 21 3 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_seq_id' 22 3 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_atom_id' 23 3 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_comp_id' 24 3 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_seq_id' 25 3 'Structure model' '_pdbx_struct_conn_angle.value' 26 3 'Structure model' '_struct_conn.pdbx_dist_value' 27 3 'Structure model' '_struct_conn.ptnr1_auth_asym_id' 28 3 'Structure model' '_struct_conn.ptnr1_auth_comp_id' 29 3 'Structure model' '_struct_conn.ptnr1_auth_seq_id' 30 3 'Structure model' '_struct_conn.ptnr1_label_asym_id' 31 3 'Structure model' '_struct_conn.ptnr1_label_atom_id' 32 3 'Structure model' '_struct_conn.ptnr1_label_comp_id' 33 3 'Structure model' '_struct_conn.ptnr1_label_seq_id' 34 3 'Structure model' '_struct_conn.ptnr2_auth_asym_id' 35 3 'Structure model' '_struct_conn.ptnr2_auth_comp_id' 36 3 'Structure model' '_struct_conn.ptnr2_auth_seq_id' 37 3 'Structure model' '_struct_conn.ptnr2_label_asym_id' 38 3 'Structure model' '_struct_conn.ptnr2_label_atom_id' 39 3 'Structure model' '_struct_conn.ptnr2_label_comp_id' 40 3 'Structure model' '_struct_conn.ptnr2_label_seq_id' 41 3 'Structure model' '_struct_site.pdbx_auth_asym_id' 42 3 'Structure model' '_struct_site.pdbx_auth_comp_id' 43 3 'Structure model' '_struct_site.pdbx_auth_seq_id' # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 4LVK _pdbx_database_status.recvd_initial_deposition_date 2013-07-26 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_nmr_data ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Pluta, R.' 1 'Boer, D.R.' 2 'Coll, M.' 3 # _citation.id primary _citation.title 'Structural basis of a histidine-DNA nicking/joining mechanism for gene transfer and promiscuous spread of antibiotic resistance.' _citation.journal_abbrev 'Proc. Natl. Acad. Sci. U.S.A.' _citation.journal_volume 114 _citation.page_first E6526 _citation.page_last E6535 _citation.year 2017 _citation.journal_id_ASTM PNASA6 _citation.country US _citation.journal_id_ISSN 1091-6490 _citation.journal_id_CSD 0040 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 28739894 _citation.pdbx_database_id_DOI 10.1073/pnas.1702971114 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Pluta, R.' 1 ? primary 'Boer, D.R.' 2 ? primary 'Lorenzo-Diaz, F.' 3 ? primary 'Russi, S.' 4 ? primary 'Gomez, H.' 5 ? primary 'Fernandez-Lopez, C.' 6 ? primary 'Perez-Luque, R.' 7 ? primary 'Orozco, M.' 8 ? primary 'Espinosa, M.' 9 ? primary 'Coll, M.' 10 ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'Plasmid recombination enzyme' 23168.918 1 ? ? 'Relaxase Domain of MobM protein' ? 2 polymer syn 'ACTTTAT oligonucleotide' 2087.409 1 ? ? 'oligonucleotide_1 mimicking pMV158 oriT DNA hairpin' ? 3 polymer syn 'ATAAAGTATAGTGTGpo oligonucleotide' 4976.263 1 ? ? 'oligonucleotide_2 mimicking pMV158 oriT DNA hairpin' ? 4 non-polymer syn 'MANGANESE (II) ION' 54.938 1 ? ? ? ? 5 non-polymer syn 'SODIUM ION' 22.990 1 ? ? ? ? 6 water nat water 18.015 67 ? ? ? ? # _entity_name_com.entity_id 1 _entity_name_com.name 'Mobilization protein' # loop_ _entity_poly.entity_id _entity_poly.type _entity_poly.nstd_linkage _entity_poly.nstd_monomer _entity_poly.pdbx_seq_one_letter_code _entity_poly.pdbx_seq_one_letter_code_can _entity_poly.pdbx_strand_id _entity_poly.pdbx_target_identifier 1 'polypeptide(L)' no no ;SYMVARMQKMKAGNLGGAFKHNERVFETHSNKDINPSRSHLNYELTDRDRSVSYEKQIKDYVNENKVSNRAIRKDAVLCD EWIITSDKDFFEKLDEEQTRTFFETAKNYFAENYGESNIAYASVHLDESTPHMHMGVVPFENGKLSSKAMFDREELKHIQ EDLPRYMSDHGFELERGKLNSEAKHKTVAEFKRAMADM ; ;SYMVARMQKMKAGNLGGAFKHNERVFETHSNKDINPSRSHLNYELTDRDRSVSYEKQIKDYVNENKVSNRAIRKDAVLCD EWIITSDKDFFEKLDEEQTRTFFETAKNYFAENYGESNIAYASVHLDESTPHMHMGVVPFENGKLSSKAMFDREELKHIQ EDLPRYMSDHGFELERGKLNSEAKHKTVAEFKRAMADM ; A ? 2 polydeoxyribonucleotide no no '(DA)(DC)(DT)(DT)(DT)(DA)(DT)' ACTTTAT B ? 3 polydeoxyribonucleotide no no '(DA)(DT)(DA)(DA)(DA)(DG)(DT)(DA)(DT)(DA)(DG)(DT)(DG)(DT)(DG)(DT)' ATAAAGTATAGTGTGT C ? # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 4 'MANGANESE (II) ION' MN 5 'SODIUM ION' NA 6 water HOH # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 SER n 1 2 TYR n 1 3 MET n 1 4 VAL n 1 5 ALA n 1 6 ARG n 1 7 MET n 1 8 GLN n 1 9 LYS n 1 10 MET n 1 11 LYS n 1 12 ALA n 1 13 GLY n 1 14 ASN n 1 15 LEU n 1 16 GLY n 1 17 GLY n 1 18 ALA n 1 19 PHE n 1 20 LYS n 1 21 HIS n 1 22 ASN n 1 23 GLU n 1 24 ARG n 1 25 VAL n 1 26 PHE n 1 27 GLU n 1 28 THR n 1 29 HIS n 1 30 SER n 1 31 ASN n 1 32 LYS n 1 33 ASP n 1 34 ILE n 1 35 ASN n 1 36 PRO n 1 37 SER n 1 38 ARG n 1 39 SER n 1 40 HIS n 1 41 LEU n 1 42 ASN n 1 43 TYR n 1 44 GLU n 1 45 LEU n 1 46 THR n 1 47 ASP n 1 48 ARG n 1 49 ASP n 1 50 ARG n 1 51 SER n 1 52 VAL n 1 53 SER n 1 54 TYR n 1 55 GLU n 1 56 LYS n 1 57 GLN n 1 58 ILE n 1 59 LYS n 1 60 ASP n 1 61 TYR n 1 62 VAL n 1 63 ASN n 1 64 GLU n 1 65 ASN n 1 66 LYS n 1 67 VAL n 1 68 SER n 1 69 ASN n 1 70 ARG n 1 71 ALA n 1 72 ILE n 1 73 ARG n 1 74 LYS n 1 75 ASP n 1 76 ALA n 1 77 VAL n 1 78 LEU n 1 79 CYS n 1 80 ASP n 1 81 GLU n 1 82 TRP n 1 83 ILE n 1 84 ILE n 1 85 THR n 1 86 SER n 1 87 ASP n 1 88 LYS n 1 89 ASP n 1 90 PHE n 1 91 PHE n 1 92 GLU n 1 93 LYS n 1 94 LEU n 1 95 ASP n 1 96 GLU n 1 97 GLU n 1 98 GLN n 1 99 THR n 1 100 ARG n 1 101 THR n 1 102 PHE n 1 103 PHE n 1 104 GLU n 1 105 THR n 1 106 ALA n 1 107 LYS n 1 108 ASN n 1 109 TYR n 1 110 PHE n 1 111 ALA n 1 112 GLU n 1 113 ASN n 1 114 TYR n 1 115 GLY n 1 116 GLU n 1 117 SER n 1 118 ASN n 1 119 ILE n 1 120 ALA n 1 121 TYR n 1 122 ALA n 1 123 SER n 1 124 VAL n 1 125 HIS n 1 126 LEU n 1 127 ASP n 1 128 GLU n 1 129 SER n 1 130 THR n 1 131 PRO n 1 132 HIS n 1 133 MET n 1 134 HIS n 1 135 MET n 1 136 GLY n 1 137 VAL n 1 138 VAL n 1 139 PRO n 1 140 PHE n 1 141 GLU n 1 142 ASN n 1 143 GLY n 1 144 LYS n 1 145 LEU n 1 146 SER n 1 147 SER n 1 148 LYS n 1 149 ALA n 1 150 MET n 1 151 PHE n 1 152 ASP n 1 153 ARG n 1 154 GLU n 1 155 GLU n 1 156 LEU n 1 157 LYS n 1 158 HIS n 1 159 ILE n 1 160 GLN n 1 161 GLU n 1 162 ASP n 1 163 LEU n 1 164 PRO n 1 165 ARG n 1 166 TYR n 1 167 MET n 1 168 SER n 1 169 ASP n 1 170 HIS n 1 171 GLY n 1 172 PHE n 1 173 GLU n 1 174 LEU n 1 175 GLU n 1 176 ARG n 1 177 GLY n 1 178 LYS n 1 179 LEU n 1 180 ASN n 1 181 SER n 1 182 GLU n 1 183 ALA n 1 184 LYS n 1 185 HIS n 1 186 LYS n 1 187 THR n 1 188 VAL n 1 189 ALA n 1 190 GLU n 1 191 PHE n 1 192 LYS n 1 193 ARG n 1 194 ALA n 1 195 MET n 1 196 ALA n 1 197 ASP n 1 198 MET n 2 1 DA n 2 2 DC n 2 3 DT n 2 4 DT n 2 5 DT n 2 6 DA n 2 7 DT n 3 1 DA n 3 2 DT n 3 3 DA n 3 4 DA n 3 5 DA n 3 6 DG n 3 7 DT n 3 8 DA n 3 9 DT n 3 10 DA n 3 11 DG n 3 12 DT n 3 13 DG n 3 14 DT n 3 15 DG n 3 16 DT n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene 'pre, mob' _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Streptococcus agalactiae' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 1311 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 469008 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain 'BL21 (DE3)' _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type plasmid _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name pQE-1 _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # loop_ _pdbx_entity_src_syn.entity_id _pdbx_entity_src_syn.pdbx_src_id _pdbx_entity_src_syn.pdbx_alt_source_flag _pdbx_entity_src_syn.pdbx_beg_seq_num _pdbx_entity_src_syn.pdbx_end_seq_num _pdbx_entity_src_syn.organism_scientific _pdbx_entity_src_syn.organism_common_name _pdbx_entity_src_syn.ncbi_taxonomy_id _pdbx_entity_src_syn.details 2 1 sample ? ? ? ? ? 'Oligonucleotides were obtained from Biomers (Ulm, Germany).' 3 1 sample ? ? ? ? ? 'Oligonucleotides were obtained from Biomers (Ulm, Germany).' # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 DA 'DNA linking' y "2'-DEOXYADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O6 P' 331.222 DC 'DNA linking' y "2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O7 P' 307.197 DG 'DNA linking' y "2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 DT 'DNA linking' y "THYMIDINE-5'-MONOPHOSPHATE" ? 'C10 H15 N2 O8 P' 322.208 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 MN non-polymer . 'MANGANESE (II) ION' ? 'Mn 2' 54.938 NA non-polymer . 'SODIUM ION' ? 'Na 1' 22.990 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 SER 1 2 2 SER SER A . n A 1 2 TYR 2 3 3 TYR TYR A . n A 1 3 MET 3 4 4 MET MET A . n A 1 4 VAL 4 5 5 VAL VAL A . n A 1 5 ALA 5 6 6 ALA ALA A . n A 1 6 ARG 6 7 7 ARG ARG A . n A 1 7 MET 7 8 8 MET MET A . n A 1 8 GLN 8 9 9 GLN GLN A . n A 1 9 LYS 9 10 10 LYS LYS A . n A 1 10 MET 10 11 11 MET MET A . n A 1 11 LYS 11 12 12 LYS LYS A . n A 1 12 ALA 12 13 13 ALA ALA A . n A 1 13 GLY 13 14 14 GLY GLY A . n A 1 14 ASN 14 15 15 ASN ASN A . n A 1 15 LEU 15 16 16 LEU LEU A . n A 1 16 GLY 16 17 17 GLY GLY A . n A 1 17 GLY 17 18 18 GLY GLY A . n A 1 18 ALA 18 19 19 ALA ALA A . n A 1 19 PHE 19 20 20 PHE PHE A . n A 1 20 LYS 20 21 21 LYS LYS A . n A 1 21 HIS 21 22 22 HIS HIS A . n A 1 22 ASN 22 23 23 ASN ASN A . n A 1 23 GLU 23 24 24 GLU GLU A . n A 1 24 ARG 24 25 25 ARG ARG A . n A 1 25 VAL 25 26 26 VAL VAL A . n A 1 26 PHE 26 27 ? ? ? A . n A 1 27 GLU 27 28 ? ? ? A . n A 1 28 THR 28 29 ? ? ? A . n A 1 29 HIS 29 30 ? ? ? A . n A 1 30 SER 30 31 31 SER SER A . n A 1 31 ASN 31 32 32 ASN ASN A . n A 1 32 LYS 32 33 33 LYS LYS A . n A 1 33 ASP 33 34 34 ASP ASP A . n A 1 34 ILE 34 35 35 ILE ILE A . n A 1 35 ASN 35 36 36 ASN ASN A . n A 1 36 PRO 36 37 37 PRO PRO A . n A 1 37 SER 37 38 38 SER SER A . n A 1 38 ARG 38 39 39 ARG ARG A . n A 1 39 SER 39 40 40 SER SER A . n A 1 40 HIS 40 41 41 HIS HIS A . n A 1 41 LEU 41 42 42 LEU LEU A . n A 1 42 ASN 42 43 43 ASN ASN A . n A 1 43 TYR 43 44 44 TYR TYR A . n A 1 44 GLU 44 45 45 GLU GLU A . n A 1 45 LEU 45 46 46 LEU LEU A . n A 1 46 THR 46 47 47 THR THR A . n A 1 47 ASP 47 48 48 ASP ASP A . n A 1 48 ARG 48 49 49 ARG ARG A . n A 1 49 ASP 49 50 50 ASP ASP A . n A 1 50 ARG 50 51 51 ARG ARG A . n A 1 51 SER 51 52 52 SER SER A . n A 1 52 VAL 52 53 53 VAL VAL A . n A 1 53 SER 53 54 54 SER SER A . n A 1 54 TYR 54 55 55 TYR TYR A . n A 1 55 GLU 55 56 56 GLU GLU A . n A 1 56 LYS 56 57 57 LYS LYS A . n A 1 57 GLN 57 58 58 GLN GLN A . n A 1 58 ILE 58 59 59 ILE ILE A . n A 1 59 LYS 59 60 60 LYS LYS A . n A 1 60 ASP 60 61 61 ASP ASP A . n A 1 61 TYR 61 62 62 TYR TYR A . n A 1 62 VAL 62 63 63 VAL VAL A . n A 1 63 ASN 63 64 64 ASN ASN A . n A 1 64 GLU 64 65 65 GLU GLU A . n A 1 65 ASN 65 66 66 ASN ASN A . n A 1 66 LYS 66 67 67 LYS LYS A . n A 1 67 VAL 67 68 68 VAL VAL A . n A 1 68 SER 68 69 69 SER SER A . n A 1 69 ASN 69 70 70 ASN ASN A . n A 1 70 ARG 70 71 71 ARG ARG A . n A 1 71 ALA 71 72 72 ALA ALA A . n A 1 72 ILE 72 73 73 ILE ILE A . n A 1 73 ARG 73 74 74 ARG ARG A . n A 1 74 LYS 74 75 75 LYS LYS A . n A 1 75 ASP 75 76 76 ASP ASP A . n A 1 76 ALA 76 77 77 ALA ALA A . n A 1 77 VAL 77 78 78 VAL VAL A . n A 1 78 LEU 78 79 79 LEU LEU A . n A 1 79 CYS 79 80 80 CYS CYS A . n A 1 80 ASP 80 81 81 ASP ASP A . n A 1 81 GLU 81 82 82 GLU GLU A . n A 1 82 TRP 82 83 83 TRP TRP A . n A 1 83 ILE 83 84 84 ILE ILE A . n A 1 84 ILE 84 85 85 ILE ILE A . n A 1 85 THR 85 86 86 THR THR A . n A 1 86 SER 86 87 87 SER SER A . n A 1 87 ASP 87 88 88 ASP ASP A . n A 1 88 LYS 88 89 89 LYS LYS A . n A 1 89 ASP 89 90 90 ASP ASP A . n A 1 90 PHE 90 91 91 PHE PHE A . n A 1 91 PHE 91 92 92 PHE PHE A . n A 1 92 GLU 92 93 93 GLU GLU A . n A 1 93 LYS 93 94 94 LYS LYS A . n A 1 94 LEU 94 95 95 LEU LEU A . n A 1 95 ASP 95 96 96 ASP ASP A . n A 1 96 GLU 96 97 97 GLU GLU A . n A 1 97 GLU 97 98 98 GLU GLU A . n A 1 98 GLN 98 99 99 GLN GLN A . n A 1 99 THR 99 100 100 THR THR A . n A 1 100 ARG 100 101 101 ARG ARG A . n A 1 101 THR 101 102 102 THR THR A . n A 1 102 PHE 102 103 103 PHE PHE A . n A 1 103 PHE 103 104 104 PHE PHE A . n A 1 104 GLU 104 105 105 GLU GLU A . n A 1 105 THR 105 106 106 THR THR A . n A 1 106 ALA 106 107 107 ALA ALA A . n A 1 107 LYS 107 108 108 LYS LYS A . n A 1 108 ASN 108 109 109 ASN ASN A . n A 1 109 TYR 109 110 110 TYR TYR A . n A 1 110 PHE 110 111 111 PHE PHE A . n A 1 111 ALA 111 112 112 ALA ALA A . n A 1 112 GLU 112 113 113 GLU GLU A . n A 1 113 ASN 113 114 114 ASN ASN A . n A 1 114 TYR 114 115 115 TYR TYR A . n A 1 115 GLY 115 116 116 GLY GLY A . n A 1 116 GLU 116 117 117 GLU GLU A . n A 1 117 SER 117 118 118 SER SER A . n A 1 118 ASN 118 119 119 ASN ASN A . n A 1 119 ILE 119 120 120 ILE ILE A . n A 1 120 ALA 120 121 121 ALA ALA A . n A 1 121 TYR 121 122 122 TYR TYR A . n A 1 122 ALA 122 123 123 ALA ALA A . n A 1 123 SER 123 124 124 SER SER A . n A 1 124 VAL 124 125 125 VAL VAL A . n A 1 125 HIS 125 126 126 HIS HIS A . n A 1 126 LEU 126 127 127 LEU LEU A . n A 1 127 ASP 127 128 128 ASP ASP A . n A 1 128 GLU 128 129 129 GLU GLU A . n A 1 129 SER 129 130 130 SER SER A . n A 1 130 THR 130 131 131 THR THR A . n A 1 131 PRO 131 132 132 PRO PRO A . n A 1 132 HIS 132 133 133 HIS HIS A . n A 1 133 MET 133 134 134 MET MET A . n A 1 134 HIS 134 135 135 HIS HIS A . n A 1 135 MET 135 136 136 MET MET A . n A 1 136 GLY 136 137 137 GLY GLY A . n A 1 137 VAL 137 138 138 VAL VAL A . n A 1 138 VAL 138 139 139 VAL VAL A . n A 1 139 PRO 139 140 140 PRO PRO A . n A 1 140 PHE 140 141 141 PHE PHE A . n A 1 141 GLU 141 142 142 GLU GLU A . n A 1 142 ASN 142 143 143 ASN ASN A . n A 1 143 GLY 143 144 144 GLY GLY A . n A 1 144 LYS 144 145 145 LYS LYS A . n A 1 145 LEU 145 146 146 LEU LEU A . n A 1 146 SER 146 147 147 SER SER A . n A 1 147 SER 147 148 148 SER SER A . n A 1 148 LYS 148 149 149 LYS LYS A . n A 1 149 ALA 149 150 150 ALA ALA A . n A 1 150 MET 150 151 151 MET MET A . n A 1 151 PHE 151 152 152 PHE PHE A . n A 1 152 ASP 152 153 153 ASP ASP A . n A 1 153 ARG 153 154 154 ARG ARG A . n A 1 154 GLU 154 155 155 GLU GLU A . n A 1 155 GLU 155 156 156 GLU GLU A . n A 1 156 LEU 156 157 157 LEU LEU A . n A 1 157 LYS 157 158 158 LYS LYS A . n A 1 158 HIS 158 159 159 HIS HIS A . n A 1 159 ILE 159 160 160 ILE ILE A . n A 1 160 GLN 160 161 161 GLN GLN A . n A 1 161 GLU 161 162 162 GLU GLU A . n A 1 162 ASP 162 163 163 ASP ASP A . n A 1 163 LEU 163 164 164 LEU LEU A . n A 1 164 PRO 164 165 165 PRO PRO A . n A 1 165 ARG 165 166 166 ARG ARG A . n A 1 166 TYR 166 167 167 TYR TYR A . n A 1 167 MET 167 168 168 MET MET A . n A 1 168 SER 168 169 169 SER SER A . n A 1 169 ASP 169 170 170 ASP ASP A . n A 1 170 HIS 170 171 171 HIS HIS A . n A 1 171 GLY 171 172 172 GLY GLY A . n A 1 172 PHE 172 173 173 PHE PHE A . n A 1 173 GLU 173 174 174 GLU GLU A . n A 1 174 LEU 174 175 175 LEU LEU A . n A 1 175 GLU 175 176 176 GLU GLU A . n A 1 176 ARG 176 177 177 ARG ARG A . n A 1 177 GLY 177 178 178 GLY GLY A . n A 1 178 LYS 178 179 179 LYS LYS A . n A 1 179 LEU 179 180 180 LEU LEU A . n A 1 180 ASN 180 181 181 ASN ASN A . n A 1 181 SER 181 182 182 SER SER A . n A 1 182 GLU 182 183 183 GLU GLU A . n A 1 183 ALA 183 184 184 ALA ALA A . n A 1 184 LYS 184 185 185 LYS LYS A . n A 1 185 HIS 185 186 186 HIS HIS A . n A 1 186 LYS 186 187 187 LYS LYS A . n A 1 187 THR 187 188 188 THR THR A . n A 1 188 VAL 188 189 189 VAL VAL A . n A 1 189 ALA 189 190 190 ALA ALA A . n A 1 190 GLU 190 191 191 GLU GLU A . n A 1 191 PHE 191 192 192 PHE PHE A . n A 1 192 LYS 192 193 193 LYS LYS A . n A 1 193 ARG 193 194 194 ARG ARG A . n A 1 194 ALA 194 195 195 ALA ALA A . n A 1 195 MET 195 196 196 MET MET A . n A 1 196 ALA 196 197 ? ? ? A . n A 1 197 ASP 197 198 ? ? ? A . n A 1 198 MET 198 199 ? ? ? A . n B 2 1 DA 1 1 1 DA DA B . n B 2 2 DC 2 2 2 DC DC B . n B 2 3 DT 3 3 3 DT DT B . n B 2 4 DT 4 4 4 DT DT B . n B 2 5 DT 5 5 5 DT DT B . n B 2 6 DA 6 6 6 DA DA B . n B 2 7 DT 7 7 7 DT DT B . n C 3 1 DA 1 12 12 DA DA C . n C 3 2 DT 2 13 13 DT DT C . n C 3 3 DA 3 14 14 DA DA C . n C 3 4 DA 4 15 15 DA DA C . n C 3 5 DA 5 16 16 DA DA C . n C 3 6 DG 6 17 17 DG DG C . n C 3 7 DT 7 18 18 DT DT C . n C 3 8 DA 8 19 19 DA DA C . n C 3 9 DT 9 20 20 DT DT C . n C 3 10 DA 10 21 21 DA DA C . n C 3 11 DG 11 22 22 DG DG C . n C 3 12 DT 12 23 23 DT DT C . n C 3 13 DG 13 24 24 DG DG C . n C 3 14 DT 14 25 25 DT DT C . n C 3 15 DG 15 26 26 DG DG C . n C 3 16 DT 16 27 27 DT DT C . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code D 4 MN 1 201 201 MN MN A . E 5 NA 1 101 1 NA NA B . F 6 HOH 1 301 1 HOH HOH A . F 6 HOH 2 302 3 HOH HOH A . F 6 HOH 3 303 6 HOH HOH A . F 6 HOH 4 304 7 HOH HOH A . F 6 HOH 5 305 8 HOH HOH A . F 6 HOH 6 306 10 HOH HOH A . F 6 HOH 7 307 11 HOH HOH A . F 6 HOH 8 308 12 HOH HOH A . F 6 HOH 9 309 18 HOH HOH A . F 6 HOH 10 310 19 HOH HOH A . F 6 HOH 11 311 21 HOH HOH A . F 6 HOH 12 312 22 HOH HOH A . F 6 HOH 13 313 24 HOH HOH A . F 6 HOH 14 314 27 HOH HOH A . F 6 HOH 15 315 29 HOH HOH A . F 6 HOH 16 316 30 HOH HOH A . F 6 HOH 17 317 32 HOH HOH A . F 6 HOH 18 318 34 HOH HOH A . F 6 HOH 19 319 36 HOH HOH A . F 6 HOH 20 320 40 HOH HOH A . F 6 HOH 21 321 43 HOH HOH A . F 6 HOH 22 322 44 HOH HOH A . F 6 HOH 23 323 48 HOH HOH A . F 6 HOH 24 324 49 HOH HOH A . F 6 HOH 25 325 50 HOH HOH A . F 6 HOH 26 326 52 HOH HOH A . F 6 HOH 27 327 57 HOH HOH A . F 6 HOH 28 328 70 HOH HOH A . F 6 HOH 29 329 72 HOH HOH A . F 6 HOH 30 330 76 HOH HOH A . F 6 HOH 31 331 88 HOH HOH A . F 6 HOH 32 332 89 HOH HOH A . F 6 HOH 33 333 92 HOH HOH A . F 6 HOH 34 334 102 HOH HOH A . F 6 HOH 35 335 107 HOH HOH A . F 6 HOH 36 336 109 HOH HOH A . F 6 HOH 37 337 111 HOH HOH A . F 6 HOH 38 338 113 HOH HOH A . F 6 HOH 39 339 115 HOH HOH A . F 6 HOH 40 340 117 HOH HOH A . F 6 HOH 41 341 119 HOH HOH A . F 6 HOH 42 342 120 HOH HOH A . F 6 HOH 43 343 121 HOH HOH A . F 6 HOH 44 344 123 HOH HOH A . F 6 HOH 45 345 125 HOH HOH A . F 6 HOH 46 346 130 HOH HOH A . F 6 HOH 47 347 132 HOH HOH A . F 6 HOH 48 348 133 HOH HOH A . F 6 HOH 49 349 135 HOH HOH A . F 6 HOH 50 350 143 HOH HOH A . F 6 HOH 51 351 145 HOH HOH A . F 6 HOH 52 352 152 HOH HOH A . F 6 HOH 53 353 157 HOH HOH A . F 6 HOH 54 354 159 HOH HOH A . F 6 HOH 55 355 160 HOH HOH A . F 6 HOH 56 356 161 HOH HOH A . F 6 HOH 57 357 162 HOH HOH A . F 6 HOH 58 358 167 HOH HOH A . G 6 HOH 1 201 46 HOH HOH B . H 6 HOH 1 101 4 HOH HOH C . H 6 HOH 2 102 9 HOH HOH C . H 6 HOH 3 103 13 HOH HOH C . H 6 HOH 4 104 41 HOH HOH C . H 6 HOH 5 105 55 HOH HOH C . H 6 HOH 6 106 56 HOH HOH C . H 6 HOH 7 107 86 HOH HOH C . H 6 HOH 8 108 146 HOH HOH C . # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 Y 1 C DT 27 ? "C5'" ? C DT 16 "C5'" 2 1 Y 1 C DT 27 ? "C4'" ? C DT 16 "C4'" 3 1 Y 1 C DT 27 ? "O4'" ? C DT 16 "O4'" 4 1 Y 1 C DT 27 ? "C3'" ? C DT 16 "C3'" 5 1 Y 1 C DT 27 ? "O3'" ? C DT 16 "O3'" 6 1 Y 1 C DT 27 ? "C2'" ? C DT 16 "C2'" 7 1 Y 1 C DT 27 ? "C1'" ? C DT 16 "C1'" 8 1 Y 1 C DT 27 ? N1 ? C DT 16 N1 9 1 Y 1 C DT 27 ? C2 ? C DT 16 C2 10 1 Y 1 C DT 27 ? O2 ? C DT 16 O2 11 1 Y 1 C DT 27 ? N3 ? C DT 16 N3 12 1 Y 1 C DT 27 ? C4 ? C DT 16 C4 13 1 Y 1 C DT 27 ? O4 ? C DT 16 O4 14 1 Y 1 C DT 27 ? C5 ? C DT 16 C5 15 1 Y 1 C DT 27 ? C7 ? C DT 16 C7 16 1 Y 1 C DT 27 ? C6 ? C DT 16 C6 # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal BEST 'data collection' . ? 1 PHASER phasing . ? 2 REFMAC refinement 5.5.0102 ? 3 iMOSFLM 'data reduction' . ? 4 SCALA 'data scaling' . ? 5 # _cell.entry_id 4LVK _cell.length_a 112.743 _cell.length_b 112.743 _cell.length_c 91.660 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 120.00 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 4LVK _symmetry.space_group_name_H-M 'P 61 2 2' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 178 _symmetry.space_group_name_Hall ? # _exptl.entry_id 4LVK _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 2.78 _exptl_crystal.density_percent_sol 55.77 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION + seeding' _exptl_crystal_grow.temp 293 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 4.6 _exptl_crystal_grow.pdbx_pH_range ? _exptl_crystal_grow.pdbx_details '22% PEG 4000, 0.2M Sodium Chloride, 0.1M Sodium Acetate pH4.6., VAPOR DIFFUSION + seeding, temperature 293K' # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'ADSC QUANTUM 315r' _diffrn_detector.pdbx_collection_date 2011-06-08 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.97300 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'ESRF BEAMLINE ID23-1' _diffrn_source.pdbx_synchrotron_site ESRF _diffrn_source.pdbx_synchrotron_beamline ID23-1 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list 0.97300 # _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 _reflns.entry_id 4LVK _reflns.observed_criterion_sigma_I -3.0 _reflns.observed_criterion_sigma_F ? _reflns.d_resolution_low 37 _reflns.d_resolution_high 2.37 _reflns.number_obs 13543 _reflns.number_all ? _reflns.percent_possible_obs 99.3 _reflns.pdbx_Rmerge_I_obs 0.107 _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI 12.2 _reflns.B_iso_Wilson_estimate ? _reflns.pdbx_redundancy 8.4 _reflns.R_free_details ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? # _reflns_shell.pdbx_diffrn_id 1 _reflns_shell.pdbx_ordinal 1 _reflns_shell.d_res_high 2.37 _reflns_shell.d_res_low 2.51 _reflns_shell.percent_possible_all 97.8 _reflns_shell.Rmerge_I_obs ? _reflns_shell.pdbx_Rsym_value ? _reflns_shell.meanI_over_sigI_obs ? _reflns_shell.pdbx_redundancy ? _reflns_shell.percent_possible_obs ? _reflns_shell.number_unique_all ? _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_unique_obs ? _reflns_shell.pdbx_chi_squared ? # _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.entry_id 4LVK _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.ls_number_reflns_obs 13543 _refine.ls_number_reflns_all ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F . _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 36.93 _refine.ls_d_res_high 2.37 _refine.ls_percent_reflns_obs 98.71 _refine.ls_R_factor_obs 0.20312 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.20070 _refine.ls_R_factor_R_free 0.24987 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 5.0 _refine.ls_number_reflns_R_free 715 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc 0.953 _refine.correlation_coeff_Fo_to_Fc_free 0.931 _refine.B_iso_mean 59.347 _refine.aniso_B[1][1] 2.28 _refine.aniso_B[2][2] 2.28 _refine.aniso_B[3][3] -7.41 _refine.aniso_B[1][2] 2.28 _refine.aniso_B[1][3] 0.00 _refine.aniso_B[2][3] 0.00 _refine.solvent_model_details 'BABINET MODEL WITH MASK' _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_solvent_vdw_probe_radii 1.20 _refine.pdbx_solvent_ion_probe_radii 0.80 _refine.pdbx_solvent_shrinkage_radii 0.80 _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.details 'HYDROGENS HAVE BEEN USED IF PRESENT IN THE INPUT' _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD' _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R 0.309 _refine.pdbx_overall_ESU_R_Free 0.238 _refine.overall_SU_ML 0.201 _refine.pdbx_overall_phase_error ? _refine.overall_SU_B 18.270 _refine.overall_SU_R_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? _refine.ls_redundancy_reflns_obs ? _refine.overall_SU_R_free ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 1566 _refine_hist.pdbx_number_atoms_nucleic_acid 453 _refine_hist.pdbx_number_atoms_ligand 2 _refine_hist.number_atoms_solvent 67 _refine_hist.number_atoms_total 2088 _refine_hist.d_res_high 2.37 _refine_hist.d_res_low 36.93 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function r_bond_refined_d 0.012 0.018 ? 2112 'X-RAY DIFFRACTION' ? r_bond_other_d ? ? ? ? 'X-RAY DIFFRACTION' ? r_angle_refined_deg 1.864 1.900 ? 2926 'X-RAY DIFFRACTION' ? r_angle_other_deg ? ? ? ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_1_deg 6.173 5.000 ? 191 'X-RAY DIFFRACTION' ? r_dihedral_angle_2_deg 35.301 24.270 ? 89 'X-RAY DIFFRACTION' ? r_dihedral_angle_3_deg 16.715 15.000 ? 303 'X-RAY DIFFRACTION' ? r_dihedral_angle_4_deg 18.581 15.000 ? 12 'X-RAY DIFFRACTION' ? r_chiral_restr 0.116 0.200 ? 286 'X-RAY DIFFRACTION' ? r_gen_planes_refined 0.007 0.020 ? 1463 'X-RAY DIFFRACTION' ? r_gen_planes_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_nbd_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_nbd_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_nbtor_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_nbtor_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_metal_ion_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_metal_ion_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_vdw_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_vdw_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_hbond_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_hbond_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_metal_ion_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_metal_ion_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_mcbond_it 1.920 3.038 ? 764 'X-RAY DIFFRACTION' ? r_mcbond_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_mcangle_it 2.965 4.549 ? 952 'X-RAY DIFFRACTION' ? r_mcangle_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_scbond_it 2.674 2.880 ? 1346 'X-RAY DIFFRACTION' ? r_scbond_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_scangle_it ? ? ? ? 'X-RAY DIFFRACTION' ? r_scangle_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_long_range_B_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_long_range_B_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_rigid_bond_restr ? ? ? ? 'X-RAY DIFFRACTION' ? r_sphericity_free ? ? ? ? 'X-RAY DIFFRACTION' ? r_sphericity_bonded ? ? ? ? 'X-RAY DIFFRACTION' ? # _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.d_res_high 2.372 _refine_ls_shell.d_res_low 2.434 _refine_ls_shell.number_reflns_R_work 914 _refine_ls_shell.R_factor_R_work 0.336 _refine_ls_shell.percent_reflns_obs 92.88 _refine_ls_shell.R_factor_R_free 0.437 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.number_reflns_R_free 51 _refine_ls_shell.number_reflns_all ? _refine_ls_shell.R_factor_all ? _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.number_reflns_obs ? # _database_PDB_matrix.entry_id 4LVK _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _struct.entry_id 4LVK _struct.title ;MobM Relaxase Domain (MOBV; Mob_Pre) bound to plasmid pMV158 oriT DNA (22nt+3'Phosphate). Mn-bound crystal structure at pH 4.6 ; _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 4LVK _struct_keywords.pdbx_keywords 'DNA BINDING PROTEIN/DNA' _struct_keywords.text 'Protein-DNA complex, MOB Relaxase Family, MOBv, relaxase/endonuclease, oriT DNA, DNA BINDING PROTEIN-DNA complex' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? D N N 4 ? E N N 5 ? F N N 6 ? G N N 6 ? H N N 6 ? # loop_ _struct_ref.id _struct_ref.db_name _struct_ref.db_code _struct_ref.pdbx_db_accession _struct_ref.entity_id _struct_ref.pdbx_seq_one_letter_code _struct_ref.pdbx_align_begin _struct_ref.pdbx_db_isoform 1 UNP PRE_STRAG P13925 1 ;SYMVARMQKMKAGNLGGAFKHNERVFETHSNKDINPSRSHLNYELTDRDRSVSYEKQIKDYVNENKVSNRAIRKDAVLCD EWIITSDKDFFEKLDEEQTRTFFETAKNYFAENYGESNIAYASVHLDESTPHMHMGVVPFENGKLSSKAMFDREELKHIQ EDLPRYMSDHGFELERGKLNSEAKHKTVAEFKRAMADM ; 2 ? 2 PDB 4LVK 4LVK 2 ACTTTAT ? ? 3 PDB 4LVK 4LVK 3 ATAAAGTATAGTGTGT ? ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 4LVK A 1 ? 198 ? P13925 2 ? 199 ? 2 199 2 2 4LVK B 1 ? 7 ? 4LVK 1 ? 7 ? 1 7 3 3 4LVK C 1 ? 16 ? 4LVK 12 ? 27 ? 12 27 # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 5120 ? 1 MORE -42 ? 1 'SSA (A^2)' 12670 ? # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # _struct_biol.id 1 _struct_biol.details ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 LYS A 11 ? GLU A 23 ? LYS A 12 GLU A 24 1 ? 13 HELX_P HELX_P2 2 ASN A 35 ? ASN A 42 ? ASN A 36 ASN A 43 5 ? 8 HELX_P HELX_P3 3 SER A 53 ? LYS A 66 ? SER A 54 LYS A 67 1 ? 14 HELX_P HELX_P4 4 ASP A 87 ? LYS A 93 ? ASP A 88 LYS A 94 1 ? 7 HELX_P HELX_P5 5 ASP A 95 ? GLY A 115 ? ASP A 96 GLY A 116 1 ? 21 HELX_P HELX_P6 6 SER A 146 ? PHE A 151 ? SER A 147 PHE A 152 1 ? 6 HELX_P HELX_P7 7 ASP A 152 ? ASP A 169 ? ASP A 153 ASP A 170 1 ? 18 HELX_P HELX_P8 8 THR A 187 ? MET A 195 ? THR A 188 MET A 196 1 ? 9 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role metalc1 metalc ? ? A HIS 125 ND1 ? ? ? 1_555 D MN . MN ? ? A HIS 126 A MN 201 1_555 ? ? ? ? ? ? ? 2.045 ? ? metalc2 metalc ? ? A GLU 128 OE2 ? ? ? 1_555 D MN . MN ? ? A GLU 129 A MN 201 1_555 ? ? ? ? ? ? ? 1.940 ? ? metalc3 metalc ? ? A HIS 132 NE2 ? ? ? 1_555 D MN . MN ? ? A HIS 133 A MN 201 1_555 ? ? ? ? ? ? ? 2.032 ? ? metalc4 metalc ? ? A HIS 134 NE2 ? ? ? 1_555 D MN . MN ? ? A HIS 135 A MN 201 1_555 ? ? ? ? ? ? ? 2.065 ? ? metalc5 metalc ? ? D MN . MN ? ? ? 1_555 C DG 15 "O3'" ? ? A MN 201 C DG 26 1_555 ? ? ? ? ? ? ? 2.643 ? ? metalc6 metalc ? ? D MN . MN ? ? ? 1_555 C DT 16 OP1 ? ? A MN 201 C DT 27 1_555 ? ? ? ? ? ? ? 2.178 ? ? metalc7 metalc ? ? B DT 3 OP2 ? ? ? 1_555 E NA . NA ? ? B DT 3 B NA 101 1_555 ? ? ? ? ? ? ? 2.386 ? ? hydrog1 hydrog ? ? B DA 1 N1 ? ? ? 1_555 C DT 7 N3 ? ? B DA 1 C DT 18 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog2 hydrog ? ? B DA 1 N6 ? ? ? 1_555 C DT 7 O4 ? ? B DA 1 C DT 18 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog3 hydrog ? ? B DC 2 N3 ? ? ? 1_555 C DG 6 N1 ? ? B DC 2 C DG 17 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog4 hydrog ? ? B DC 2 N4 ? ? ? 1_555 C DG 6 O6 ? ? B DC 2 C DG 17 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog5 hydrog ? ? B DC 2 O2 ? ? ? 1_555 C DG 6 N2 ? ? B DC 2 C DG 17 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog6 hydrog ? ? B DT 3 N3 ? ? ? 1_555 C DA 5 N1 ? ? B DT 3 C DA 16 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog7 hydrog ? ? B DT 3 O4 ? ? ? 1_555 C DA 5 N6 ? ? B DT 3 C DA 16 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog8 hydrog ? ? B DT 4 N3 ? ? ? 1_555 C DA 4 N1 ? ? B DT 4 C DA 15 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog9 hydrog ? ? B DT 4 O4 ? ? ? 1_555 C DA 4 N6 ? ? B DT 4 C DA 15 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog10 hydrog ? ? B DT 5 N3 ? ? ? 1_555 C DA 3 N1 ? ? B DT 5 C DA 14 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog11 hydrog ? ? B DT 5 O4 ? ? ? 1_555 C DA 3 N6 ? ? B DT 5 C DA 14 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog12 hydrog ? ? B DA 6 N1 ? ? ? 1_555 C DT 2 N3 ? ? B DA 6 C DT 13 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog13 hydrog ? ? B DA 6 N6 ? ? ? 1_555 C DT 2 O4 ? ? B DA 6 C DT 13 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog14 hydrog ? ? B DT 7 N3 ? ? ? 1_555 C DA 1 N1 ? ? B DT 7 C DA 12 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog15 hydrog ? ? B DT 7 O4 ? ? ? 1_555 C DA 1 N6 ? ? B DT 7 C DA 12 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog16 hydrog ? ? C DT 12 N3 ? ? ? 1_555 C DG 15 O6 ? ? C DT 23 C DG 26 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog17 hydrog ? ? C DT 12 O2 ? ? ? 1_555 C DG 15 N1 ? ? C DT 23 C DG 26 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference metalc ? ? hydrog ? ? # loop_ _pdbx_struct_conn_angle.id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_alt_id _pdbx_struct_conn_angle.ptnr1_label_asym_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr1_auth_atom_id _pdbx_struct_conn_angle.ptnr1_auth_asym_id _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_PDB_ins_code _pdbx_struct_conn_angle.ptnr1_symmetry _pdbx_struct_conn_angle.ptnr2_label_atom_id _pdbx_struct_conn_angle.ptnr2_label_alt_id _pdbx_struct_conn_angle.ptnr2_label_asym_id _pdbx_struct_conn_angle.ptnr2_label_comp_id _pdbx_struct_conn_angle.ptnr2_label_seq_id _pdbx_struct_conn_angle.ptnr2_auth_atom_id _pdbx_struct_conn_angle.ptnr2_auth_asym_id _pdbx_struct_conn_angle.ptnr2_auth_comp_id _pdbx_struct_conn_angle.ptnr2_auth_seq_id _pdbx_struct_conn_angle.ptnr2_PDB_ins_code _pdbx_struct_conn_angle.ptnr2_symmetry _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_alt_id _pdbx_struct_conn_angle.ptnr3_label_asym_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.ptnr3_auth_atom_id _pdbx_struct_conn_angle.ptnr3_auth_asym_id _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_PDB_ins_code _pdbx_struct_conn_angle.ptnr3_symmetry _pdbx_struct_conn_angle.value _pdbx_struct_conn_angle.value_esd 1 ND1 ? A HIS 125 ? A HIS 126 ? 1_555 MN ? D MN . ? A MN 201 ? 1_555 OE2 ? A GLU 128 ? A GLU 129 ? 1_555 98.3 ? 2 ND1 ? A HIS 125 ? A HIS 126 ? 1_555 MN ? D MN . ? A MN 201 ? 1_555 NE2 ? A HIS 132 ? A HIS 133 ? 1_555 111.7 ? 3 OE2 ? A GLU 128 ? A GLU 129 ? 1_555 MN ? D MN . ? A MN 201 ? 1_555 NE2 ? A HIS 132 ? A HIS 133 ? 1_555 95.1 ? 4 ND1 ? A HIS 125 ? A HIS 126 ? 1_555 MN ? D MN . ? A MN 201 ? 1_555 NE2 ? A HIS 134 ? A HIS 135 ? 1_555 89.6 ? 5 OE2 ? A GLU 128 ? A GLU 129 ? 1_555 MN ? D MN . ? A MN 201 ? 1_555 NE2 ? A HIS 134 ? A HIS 135 ? 1_555 168.0 ? 6 NE2 ? A HIS 132 ? A HIS 133 ? 1_555 MN ? D MN . ? A MN 201 ? 1_555 NE2 ? A HIS 134 ? A HIS 135 ? 1_555 90.2 ? 7 ND1 ? A HIS 125 ? A HIS 126 ? 1_555 MN ? D MN . ? A MN 201 ? 1_555 "O3'" ? C DG 15 ? C DG 26 ? 1_555 161.4 ? 8 OE2 ? A GLU 128 ? A GLU 129 ? 1_555 MN ? D MN . ? A MN 201 ? 1_555 "O3'" ? C DG 15 ? C DG 26 ? 1_555 78.5 ? 9 NE2 ? A HIS 132 ? A HIS 133 ? 1_555 MN ? D MN . ? A MN 201 ? 1_555 "O3'" ? C DG 15 ? C DG 26 ? 1_555 87.0 ? 10 NE2 ? A HIS 134 ? A HIS 135 ? 1_555 MN ? D MN . ? A MN 201 ? 1_555 "O3'" ? C DG 15 ? C DG 26 ? 1_555 91.1 ? 11 ND1 ? A HIS 125 ? A HIS 126 ? 1_555 MN ? D MN . ? A MN 201 ? 1_555 OP1 ? C DT 16 ? C DT 27 ? 1_555 100.8 ? 12 OE2 ? A GLU 128 ? A GLU 129 ? 1_555 MN ? D MN . ? A MN 201 ? 1_555 OP1 ? C DT 16 ? C DT 27 ? 1_555 81.6 ? 13 NE2 ? A HIS 132 ? A HIS 133 ? 1_555 MN ? D MN . ? A MN 201 ? 1_555 OP1 ? C DT 16 ? C DT 27 ? 1_555 147.5 ? 14 NE2 ? A HIS 134 ? A HIS 135 ? 1_555 MN ? D MN . ? A MN 201 ? 1_555 OP1 ? C DT 16 ? C DT 27 ? 1_555 88.2 ? 15 "O3'" ? C DG 15 ? C DG 26 ? 1_555 MN ? D MN . ? A MN 201 ? 1_555 OP1 ? C DT 16 ? C DT 27 ? 1_555 60.7 ? # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details A ? 5 ? B ? 2 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel A 2 3 ? anti-parallel A 3 4 ? anti-parallel A 4 5 ? anti-parallel B 1 2 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 VAL A 4 ? MET A 10 ? VAL A 5 MET A 11 A 2 CYS A 79 ? THR A 85 ? CYS A 80 THR A 86 A 3 HIS A 132 ? VAL A 137 ? HIS A 133 VAL A 138 A 4 ILE A 119 ? HIS A 125 ? ILE A 120 HIS A 126 A 5 TYR A 43 ? GLU A 44 ? TYR A 44 GLU A 45 B 1 PHE A 140 ? GLU A 141 ? PHE A 141 GLU A 142 B 2 LYS A 144 ? LEU A 145 ? LYS A 145 LEU A 146 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 N ARG A 6 ? N ARG A 7 O ILE A 83 ? O ILE A 84 A 2 3 N TRP A 82 ? N TRP A 83 O MET A 135 ? O MET A 136 A 3 4 O HIS A 134 ? O HIS A 135 N SER A 123 ? N SER A 124 A 4 5 O VAL A 124 ? O VAL A 125 N TYR A 43 ? N TYR A 44 B 1 2 N GLU A 141 ? N GLU A 142 O LYS A 144 ? O LYS A 145 # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software A MN 201 ? 6 'BINDING SITE FOR RESIDUE MN A 201' AC2 Software B NA 101 ? 1 'BINDING SITE FOR RESIDUE NA B 101' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 6 HIS A 125 ? HIS A 126 . ? 1_555 ? 2 AC1 6 GLU A 128 ? GLU A 129 . ? 1_555 ? 3 AC1 6 HIS A 132 ? HIS A 133 . ? 1_555 ? 4 AC1 6 HIS A 134 ? HIS A 135 . ? 1_555 ? 5 AC1 6 DG C 15 ? DG C 26 . ? 1_555 ? 6 AC1 6 DT C 16 ? DT C 27 . ? 1_555 ? 7 AC2 1 DT B 3 ? DT B 3 . ? 1_555 ? # _pdbx_validate_symm_contact.id 1 _pdbx_validate_symm_contact.PDB_model_num 1 _pdbx_validate_symm_contact.auth_atom_id_1 NH2 _pdbx_validate_symm_contact.auth_asym_id_1 A _pdbx_validate_symm_contact.auth_comp_id_1 ARG _pdbx_validate_symm_contact.auth_seq_id_1 194 _pdbx_validate_symm_contact.PDB_ins_code_1 ? _pdbx_validate_symm_contact.label_alt_id_1 ? _pdbx_validate_symm_contact.site_symmetry_1 1_555 _pdbx_validate_symm_contact.auth_atom_id_2 NH2 _pdbx_validate_symm_contact.auth_asym_id_2 A _pdbx_validate_symm_contact.auth_comp_id_2 ARG _pdbx_validate_symm_contact.auth_seq_id_2 194 _pdbx_validate_symm_contact.PDB_ins_code_2 ? _pdbx_validate_symm_contact.label_alt_id_2 ? _pdbx_validate_symm_contact.site_symmetry_2 10_664 _pdbx_validate_symm_contact.dist 1.63 # loop_ _pdbx_validate_rmsd_bond.id _pdbx_validate_rmsd_bond.PDB_model_num _pdbx_validate_rmsd_bond.auth_atom_id_1 _pdbx_validate_rmsd_bond.auth_asym_id_1 _pdbx_validate_rmsd_bond.auth_comp_id_1 _pdbx_validate_rmsd_bond.auth_seq_id_1 _pdbx_validate_rmsd_bond.PDB_ins_code_1 _pdbx_validate_rmsd_bond.label_alt_id_1 _pdbx_validate_rmsd_bond.auth_atom_id_2 _pdbx_validate_rmsd_bond.auth_asym_id_2 _pdbx_validate_rmsd_bond.auth_comp_id_2 _pdbx_validate_rmsd_bond.auth_seq_id_2 _pdbx_validate_rmsd_bond.PDB_ins_code_2 _pdbx_validate_rmsd_bond.label_alt_id_2 _pdbx_validate_rmsd_bond.bond_value _pdbx_validate_rmsd_bond.bond_target_value _pdbx_validate_rmsd_bond.bond_deviation _pdbx_validate_rmsd_bond.bond_standard_deviation _pdbx_validate_rmsd_bond.linker_flag 1 1 N1 B DT 3 ? ? C2 B DT 3 ? ? 1.429 1.376 0.053 0.008 N 2 1 N3 B DT 3 ? ? C4 B DT 3 ? ? 1.321 1.382 -0.061 0.008 N 3 1 C4 B DT 3 ? ? C5 B DT 3 ? ? 1.507 1.445 0.062 0.009 N 4 1 C5 B DT 3 ? ? C6 B DT 3 ? ? 1.393 1.339 0.054 0.007 N 5 1 N1 B DT 4 ? ? C2 B DT 4 ? ? 1.442 1.376 0.066 0.008 N 6 1 N3 B DT 4 ? ? C4 B DT 4 ? ? 1.330 1.382 -0.052 0.008 N 7 1 C4 B DT 4 ? ? C5 B DT 4 ? ? 1.502 1.445 0.057 0.009 N 8 1 C5 B DT 4 ? ? C6 B DT 4 ? ? 1.398 1.339 0.059 0.007 N 9 1 N3 B DT 5 ? ? C4 B DT 5 ? ? 1.330 1.382 -0.052 0.008 N 10 1 C5 B DT 5 ? ? C6 B DT 5 ? ? 1.391 1.339 0.052 0.007 N 11 1 C4 B DT 7 ? ? C5 B DT 7 ? ? 1.502 1.445 0.057 0.009 N 12 1 C5 B DT 7 ? ? C6 B DT 7 ? ? 1.400 1.339 0.061 0.007 N 13 1 N1 C DT 13 ? ? C2 C DT 13 ? ? 1.432 1.376 0.056 0.008 N 14 1 C5 C DT 13 ? ? C6 C DT 13 ? ? 1.395 1.339 0.056 0.007 N 15 1 N1 C DT 18 ? ? C2 C DT 18 ? ? 1.447 1.376 0.071 0.008 N 16 1 N3 C DT 18 ? ? C4 C DT 18 ? ? 1.332 1.382 -0.050 0.008 N 17 1 C5 C DT 18 ? ? C6 C DT 18 ? ? 1.393 1.339 0.054 0.007 N 18 1 C5 C DT 20 ? ? C6 C DT 20 ? ? 1.384 1.339 0.045 0.007 N 19 1 N3 C DT 25 ? ? C4 C DT 25 ? ? 1.327 1.382 -0.055 0.008 N 20 1 C5 C DT 25 ? ? C6 C DT 25 ? ? 1.398 1.339 0.059 0.007 N # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 N1 B DT 3 ? ? C2 B DT 3 ? ? N3 B DT 3 ? ? 122.10 114.60 7.50 0.60 N 2 1 C2 B DT 3 ? ? N3 B DT 3 ? ? C4 B DT 3 ? ? 120.01 127.20 -7.19 0.60 N 3 1 N3 B DT 3 ? ? C4 B DT 3 ? ? C5 B DT 3 ? ? 120.46 115.20 5.26 0.60 N 4 1 C5 B DT 3 ? ? C6 B DT 3 ? ? N1 B DT 3 ? ? 119.52 123.70 -4.18 0.60 N 5 1 N3 B DT 3 ? ? C2 B DT 3 ? ? O2 B DT 3 ? ? 117.16 122.30 -5.14 0.60 N 6 1 C4 B DT 3 ? ? C5 B DT 3 ? ? C7 B DT 3 ? ? 122.68 119.00 3.68 0.60 N 7 1 N1 B DT 4 ? ? C2 B DT 4 ? ? N3 B DT 4 ? ? 121.91 114.60 7.31 0.60 N 8 1 C2 B DT 4 ? ? N3 B DT 4 ? ? C4 B DT 4 ? ? 120.29 127.20 -6.91 0.60 N 9 1 N3 B DT 4 ? ? C4 B DT 4 ? ? C5 B DT 4 ? ? 119.82 115.20 4.62 0.60 N 10 1 C5 B DT 4 ? ? C6 B DT 4 ? ? N1 B DT 4 ? ? 119.64 123.70 -4.06 0.60 N 11 1 N3 B DT 4 ? ? C2 B DT 4 ? ? O2 B DT 4 ? ? 116.77 122.30 -5.53 0.60 N 12 1 "O5'" B DT 5 ? ? P B DT 5 ? ? OP2 B DT 5 ? ? 99.86 105.70 -5.84 0.90 N 13 1 "O5'" B DT 5 ? ? "C5'" B DT 5 ? ? "C4'" B DT 5 ? ? 103.51 109.40 -5.89 0.80 N 14 1 N1 B DT 5 ? ? C2 B DT 5 ? ? N3 B DT 5 ? ? 122.98 114.60 8.38 0.60 N 15 1 C2 B DT 5 ? ? N3 B DT 5 ? ? C4 B DT 5 ? ? 117.94 127.20 -9.26 0.60 N 16 1 N3 B DT 5 ? ? C4 B DT 5 ? ? C5 B DT 5 ? ? 122.32 115.20 7.12 0.60 N 17 1 C5 B DT 5 ? ? C6 B DT 5 ? ? N1 B DT 5 ? ? 119.22 123.70 -4.48 0.60 N 18 1 N1 B DT 5 ? ? C2 B DT 5 ? ? O2 B DT 5 ? ? 117.71 123.10 -5.39 0.80 N 19 1 C5 B DT 5 ? ? C4 B DT 5 ? ? O4 B DT 5 ? ? 118.83 124.90 -6.07 0.70 N 20 1 "O5'" B DT 7 ? ? P B DT 7 ? ? OP1 B DT 7 ? ? 98.50 105.70 -7.20 0.90 N 21 1 "C1'" B DT 7 ? ? "O4'" B DT 7 ? ? "C4'" B DT 7 ? ? 114.74 110.30 4.44 0.70 N 22 1 "O4'" B DT 7 ? ? "C1'" B DT 7 ? ? N1 B DT 7 ? ? 112.58 108.30 4.28 0.30 N 23 1 C6 B DT 7 ? ? N1 B DT 7 ? ? C2 B DT 7 ? ? 118.28 121.30 -3.02 0.50 N 24 1 N1 B DT 7 ? ? C2 B DT 7 ? ? N3 B DT 7 ? ? 123.51 114.60 8.91 0.60 N 25 1 C2 B DT 7 ? ? N3 B DT 7 ? ? C4 B DT 7 ? ? 119.93 127.20 -7.27 0.60 N 26 1 N3 B DT 7 ? ? C4 B DT 7 ? ? C5 B DT 7 ? ? 119.55 115.20 4.35 0.60 N 27 1 N1 B DT 7 ? ? C2 B DT 7 ? ? O2 B DT 7 ? ? 117.43 123.10 -5.67 0.80 N 28 1 "C4'" C DT 13 ? ? "C3'" C DT 13 ? ? "C2'" C DT 13 ? ? 108.93 103.10 5.83 0.90 N 29 1 N1 C DT 13 ? ? C2 C DT 13 ? ? N3 C DT 13 ? ? 121.52 114.60 6.92 0.60 N 30 1 C2 C DT 13 ? ? N3 C DT 13 ? ? C4 C DT 13 ? ? 120.69 127.20 -6.51 0.60 N 31 1 N3 C DT 13 ? ? C4 C DT 13 ? ? C5 C DT 13 ? ? 119.92 115.20 4.72 0.60 N 32 1 N3 C DT 13 ? ? C2 C DT 13 ? ? O2 C DT 13 ? ? 117.27 122.30 -5.03 0.60 N 33 1 "O4'" C DT 18 ? ? "C1'" C DT 18 ? ? N1 C DT 18 ? ? 113.20 108.30 4.90 0.30 N 34 1 C6 C DT 18 ? ? N1 C DT 18 ? ? C2 C DT 18 ? ? 117.89 121.30 -3.41 0.50 N 35 1 N1 C DT 18 ? ? C2 C DT 18 ? ? N3 C DT 18 ? ? 122.75 114.60 8.15 0.60 N 36 1 C2 C DT 18 ? ? N3 C DT 18 ? ? C4 C DT 18 ? ? 120.52 127.20 -6.68 0.60 N 37 1 N3 C DT 18 ? ? C4 C DT 18 ? ? C5 C DT 18 ? ? 119.87 115.20 4.67 0.60 N 38 1 N3 C DT 18 ? ? C2 C DT 18 ? ? O2 C DT 18 ? ? 114.56 122.30 -7.74 0.60 N 39 1 N1 C DT 20 ? ? C2 C DT 20 ? ? N3 C DT 20 ? ? 119.39 114.60 4.79 0.60 N 40 1 C2 C DT 20 ? ? N3 C DT 20 ? ? C4 C DT 20 ? ? 121.00 127.20 -6.20 0.60 N 41 1 N3 C DT 20 ? ? C4 C DT 20 ? ? C5 C DT 20 ? ? 120.62 115.20 5.42 0.60 N 42 1 C5 C DT 20 ? ? C6 C DT 20 ? ? N1 C DT 20 ? ? 119.78 123.70 -3.92 0.60 N 43 1 C5 C DT 20 ? ? C4 C DT 20 ? ? O4 C DT 20 ? ? 119.05 124.90 -5.85 0.70 N 44 1 N1 C DT 23 ? ? C2 C DT 23 ? ? N3 C DT 23 ? ? 120.36 114.60 5.76 0.60 N 45 1 C2 C DT 23 ? ? N3 C DT 23 ? ? C4 C DT 23 ? ? 120.71 127.20 -6.49 0.60 N 46 1 N3 C DT 23 ? ? C4 C DT 23 ? ? C5 C DT 23 ? ? 120.23 115.20 5.03 0.60 N 47 1 C5 C DT 23 ? ? C6 C DT 23 ? ? N1 C DT 23 ? ? 119.89 123.70 -3.81 0.60 N 48 1 N3 C DT 23 ? ? C2 C DT 23 ? ? O2 C DT 23 ? ? 118.34 122.30 -3.96 0.60 N 49 1 "O4'" C DT 25 ? ? "C1'" C DT 25 ? ? N1 C DT 25 ? ? 116.51 108.30 8.21 0.30 N 50 1 C6 C DT 25 ? ? N1 C DT 25 ? ? C2 C DT 25 ? ? 118.00 121.30 -3.30 0.50 N 51 1 N1 C DT 25 ? ? C2 C DT 25 ? ? N3 C DT 25 ? ? 122.53 114.60 7.93 0.60 N 52 1 C2 C DT 25 ? ? N3 C DT 25 ? ? C4 C DT 25 ? ? 122.01 127.20 -5.19 0.60 N 53 1 N3 C DT 25 ? ? C2 C DT 25 ? ? O2 C DT 25 ? ? 117.46 122.30 -4.84 0.60 N 54 1 C4 C DT 25 ? ? C5 C DT 25 ? ? C7 C DT 25 ? ? 122.75 119.00 3.75 0.60 N # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 ASP A 48 ? ? -102.41 41.91 2 1 SER A 87 ? ? -154.08 -149.51 3 1 ALA A 123 ? ? -161.73 88.86 4 1 GLU A 129 ? ? -109.14 -159.97 5 1 SER A 147 ? ? -161.83 100.41 # loop_ _pdbx_refine_tls.pdbx_refine_id _pdbx_refine_tls.id _pdbx_refine_tls.details _pdbx_refine_tls.method _pdbx_refine_tls.origin_x _pdbx_refine_tls.origin_y _pdbx_refine_tls.origin_z _pdbx_refine_tls.T[1][1] _pdbx_refine_tls.T[2][2] _pdbx_refine_tls.T[3][3] _pdbx_refine_tls.T[1][2] _pdbx_refine_tls.T[1][3] _pdbx_refine_tls.T[2][3] _pdbx_refine_tls.L[1][1] _pdbx_refine_tls.L[2][2] _pdbx_refine_tls.L[3][3] _pdbx_refine_tls.L[1][2] _pdbx_refine_tls.L[1][3] _pdbx_refine_tls.L[2][3] _pdbx_refine_tls.S[1][1] _pdbx_refine_tls.S[1][2] _pdbx_refine_tls.S[1][3] _pdbx_refine_tls.S[2][1] _pdbx_refine_tls.S[2][2] _pdbx_refine_tls.S[2][3] _pdbx_refine_tls.S[3][1] _pdbx_refine_tls.S[3][2] _pdbx_refine_tls.S[3][3] 'X-RAY DIFFRACTION' 1 ? refined -5.1682 42.3776 -1.7303 0.1234 0.1528 0.2304 -0.0375 0.0456 0.0153 1.9943 1.5453 4.9057 0.1199 0.2688 0.1314 -0.1203 0.1164 -0.0170 0.0094 0.0958 0.0140 0.1588 0.0968 0.0246 'X-RAY DIFFRACTION' 2 ? refined -16.2171 48.4559 23.9607 1.0056 0.8610 0.1807 0.3373 0.0701 0.0314 17.7032 11.4868 4.5664 6.8828 1.3439 -5.5397 -0.1635 -0.2753 0.4563 2.0911 0.5458 0.5871 -1.1017 -0.3255 -0.3823 'X-RAY DIFFRACTION' 3 ? refined -6.8174 49.2334 11.3517 0.4960 0.3417 0.2305 -0.3045 0.1233 -0.0155 4.6893 1.4000 0.6689 1.2476 0.2372 0.8035 0.1166 -0.5550 0.1725 0.1857 -0.0058 0.0521 -0.1558 0.2886 -0.1108 # loop_ _pdbx_refine_tls_group.pdbx_refine_id _pdbx_refine_tls_group.id _pdbx_refine_tls_group.refine_tls_id _pdbx_refine_tls_group.beg_auth_asym_id _pdbx_refine_tls_group.beg_auth_seq_id _pdbx_refine_tls_group.beg_label_asym_id _pdbx_refine_tls_group.beg_label_seq_id _pdbx_refine_tls_group.end_auth_asym_id _pdbx_refine_tls_group.end_auth_seq_id _pdbx_refine_tls_group.end_label_asym_id _pdbx_refine_tls_group.end_label_seq_id _pdbx_refine_tls_group.selection _pdbx_refine_tls_group.selection_details 'X-RAY DIFFRACTION' 1 1 A 2 ? ? A 196 ? ? ? ? 'X-RAY DIFFRACTION' 2 2 B 1 ? ? B 7 ? ? ? ? 'X-RAY DIFFRACTION' 3 3 C 12 ? ? C 27 ? ? ? ? # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A PHE 27 ? A PHE 26 2 1 Y 1 A GLU 28 ? A GLU 27 3 1 Y 1 A THR 29 ? A THR 28 4 1 Y 1 A HIS 30 ? A HIS 29 5 1 Y 1 A ALA 197 ? A ALA 196 6 1 Y 1 A ASP 198 ? A ASP 197 7 1 Y 1 A MET 199 ? A MET 198 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal ALA N N N N 1 ALA CA C N S 2 ALA C C N N 3 ALA O O N N 4 ALA CB C N N 5 ALA OXT O N N 6 ALA H H N N 7 ALA H2 H N N 8 ALA HA H N N 9 ALA HB1 H N N 10 ALA HB2 H N N 11 ALA HB3 H N N 12 ALA HXT H N N 13 ARG N N N N 14 ARG CA C N S 15 ARG C C N N 16 ARG O O N N 17 ARG CB C N N 18 ARG CG C N N 19 ARG CD C N N 20 ARG NE N N N 21 ARG CZ C N N 22 ARG NH1 N N N 23 ARG NH2 N N N 24 ARG OXT O N N 25 ARG H H N N 26 ARG H2 H N N 27 ARG HA H N N 28 ARG HB2 H N N 29 ARG HB3 H N N 30 ARG HG2 H N N 31 ARG HG3 H N N 32 ARG HD2 H N N 33 ARG HD3 H N N 34 ARG HE H N N 35 ARG HH11 H N N 36 ARG HH12 H N N 37 ARG HH21 H N N 38 ARG HH22 H N N 39 ARG HXT H N N 40 ASN N N N N 41 ASN CA C N S 42 ASN C C N N 43 ASN O O N N 44 ASN CB C N N 45 ASN CG C N N 46 ASN OD1 O N N 47 ASN ND2 N N N 48 ASN OXT O N N 49 ASN H H N N 50 ASN H2 H N N 51 ASN HA H N N 52 ASN HB2 H N N 53 ASN HB3 H N N 54 ASN HD21 H N N 55 ASN HD22 H N N 56 ASN HXT H N N 57 ASP N N N N 58 ASP CA C N S 59 ASP C C N N 60 ASP O O N N 61 ASP CB C N N 62 ASP CG C N N 63 ASP OD1 O N N 64 ASP OD2 O N N 65 ASP OXT O N N 66 ASP H H N N 67 ASP H2 H N N 68 ASP HA H N N 69 ASP HB2 H N N 70 ASP HB3 H N N 71 ASP HD2 H N N 72 ASP HXT H N N 73 CYS N N N N 74 CYS CA C N R 75 CYS C C N N 76 CYS O O N N 77 CYS CB C N N 78 CYS SG S N N 79 CYS OXT O N N 80 CYS H H N N 81 CYS H2 H N N 82 CYS HA H N N 83 CYS HB2 H N N 84 CYS HB3 H N N 85 CYS HG H N N 86 CYS HXT H N N 87 DA OP3 O N N 88 DA P P N N 89 DA OP1 O N N 90 DA OP2 O N N 91 DA "O5'" O N N 92 DA "C5'" C N N 93 DA "C4'" C N R 94 DA "O4'" O N N 95 DA "C3'" C N S 96 DA "O3'" O N N 97 DA "C2'" C N N 98 DA "C1'" C N R 99 DA N9 N Y N 100 DA C8 C Y N 101 DA N7 N Y N 102 DA C5 C Y N 103 DA C6 C Y N 104 DA N6 N N N 105 DA N1 N Y N 106 DA C2 C Y N 107 DA N3 N Y N 108 DA C4 C Y N 109 DA HOP3 H N N 110 DA HOP2 H N N 111 DA "H5'" H N N 112 DA "H5''" H N N 113 DA "H4'" H N N 114 DA "H3'" H N N 115 DA "HO3'" H N N 116 DA "H2'" H N N 117 DA "H2''" H N N 118 DA "H1'" H N N 119 DA H8 H N N 120 DA H61 H N N 121 DA H62 H N N 122 DA H2 H N N 123 DC OP3 O N N 124 DC P P N N 125 DC OP1 O N N 126 DC OP2 O N N 127 DC "O5'" O N N 128 DC "C5'" C N N 129 DC "C4'" C N R 130 DC "O4'" O N N 131 DC "C3'" C N S 132 DC "O3'" O N N 133 DC "C2'" C N N 134 DC "C1'" C N R 135 DC N1 N N N 136 DC C2 C N N 137 DC O2 O N N 138 DC N3 N N N 139 DC C4 C N N 140 DC N4 N N N 141 DC C5 C N N 142 DC C6 C N N 143 DC HOP3 H N N 144 DC HOP2 H N N 145 DC "H5'" H N N 146 DC "H5''" H N N 147 DC "H4'" H N N 148 DC "H3'" H N N 149 DC "HO3'" H N N 150 DC "H2'" H N N 151 DC "H2''" H N N 152 DC "H1'" H N N 153 DC H41 H N N 154 DC H42 H N N 155 DC H5 H N N 156 DC H6 H N N 157 DG OP3 O N N 158 DG P P N N 159 DG OP1 O N N 160 DG OP2 O N N 161 DG "O5'" O N N 162 DG "C5'" C N N 163 DG "C4'" C N R 164 DG "O4'" O N N 165 DG "C3'" C N S 166 DG "O3'" O N N 167 DG "C2'" C N N 168 DG "C1'" C N R 169 DG N9 N Y N 170 DG C8 C Y N 171 DG N7 N Y N 172 DG C5 C Y N 173 DG C6 C N N 174 DG O6 O N N 175 DG N1 N N N 176 DG C2 C N N 177 DG N2 N N N 178 DG N3 N N N 179 DG C4 C Y N 180 DG HOP3 H N N 181 DG HOP2 H N N 182 DG "H5'" H N N 183 DG "H5''" H N N 184 DG "H4'" H N N 185 DG "H3'" H N N 186 DG "HO3'" H N N 187 DG "H2'" H N N 188 DG "H2''" H N N 189 DG "H1'" H N N 190 DG H8 H N N 191 DG H1 H N N 192 DG H21 H N N 193 DG H22 H N N 194 DT OP3 O N N 195 DT P P N N 196 DT OP1 O N N 197 DT OP2 O N N 198 DT "O5'" O N N 199 DT "C5'" C N N 200 DT "C4'" C N R 201 DT "O4'" O N N 202 DT "C3'" C N S 203 DT "O3'" O N N 204 DT "C2'" C N N 205 DT "C1'" C N R 206 DT N1 N N N 207 DT C2 C N N 208 DT O2 O N N 209 DT N3 N N N 210 DT C4 C N N 211 DT O4 O N N 212 DT C5 C N N 213 DT C7 C N N 214 DT C6 C N N 215 DT HOP3 H N N 216 DT HOP2 H N N 217 DT "H5'" H N N 218 DT "H5''" H N N 219 DT "H4'" H N N 220 DT "H3'" H N N 221 DT "HO3'" H N N 222 DT "H2'" H N N 223 DT "H2''" H N N 224 DT "H1'" H N N 225 DT H3 H N N 226 DT H71 H N N 227 DT H72 H N N 228 DT H73 H N N 229 DT H6 H N N 230 GLN N N N N 231 GLN CA C N S 232 GLN C C N N 233 GLN O O N N 234 GLN CB C N N 235 GLN CG C N N 236 GLN CD C N N 237 GLN OE1 O N N 238 GLN NE2 N N N 239 GLN OXT O N N 240 GLN H H N N 241 GLN H2 H N N 242 GLN HA H N N 243 GLN HB2 H N N 244 GLN HB3 H N N 245 GLN HG2 H N N 246 GLN HG3 H N N 247 GLN HE21 H N N 248 GLN HE22 H N N 249 GLN HXT H N N 250 GLU N N N N 251 GLU CA C N S 252 GLU C C N N 253 GLU O O N N 254 GLU CB C N N 255 GLU CG C N N 256 GLU CD C N N 257 GLU OE1 O N N 258 GLU OE2 O N N 259 GLU OXT O N N 260 GLU H H N N 261 GLU H2 H N N 262 GLU HA H N N 263 GLU HB2 H N N 264 GLU HB3 H N N 265 GLU HG2 H N N 266 GLU HG3 H N N 267 GLU HE2 H N N 268 GLU HXT H N N 269 GLY N N N N 270 GLY CA C N N 271 GLY C C N N 272 GLY O O N N 273 GLY OXT O N N 274 GLY H H N N 275 GLY H2 H N N 276 GLY HA2 H N N 277 GLY HA3 H N N 278 GLY HXT H N N 279 HIS N N N N 280 HIS CA C N S 281 HIS C C N N 282 HIS O O N N 283 HIS CB C N N 284 HIS CG C Y N 285 HIS ND1 N Y N 286 HIS CD2 C Y N 287 HIS CE1 C Y N 288 HIS NE2 N Y N 289 HIS OXT O N N 290 HIS H H N N 291 HIS H2 H N N 292 HIS HA H N N 293 HIS HB2 H N N 294 HIS HB3 H N N 295 HIS HD1 H N N 296 HIS HD2 H N N 297 HIS HE1 H N N 298 HIS HE2 H N N 299 HIS HXT H N N 300 HOH O O N N 301 HOH H1 H N N 302 HOH H2 H N N 303 ILE N N N N 304 ILE CA C N S 305 ILE C C N N 306 ILE O O N N 307 ILE CB C N S 308 ILE CG1 C N N 309 ILE CG2 C N N 310 ILE CD1 C N N 311 ILE OXT O N N 312 ILE H H N N 313 ILE H2 H N N 314 ILE HA H N N 315 ILE HB H N N 316 ILE HG12 H N N 317 ILE HG13 H N N 318 ILE HG21 H N N 319 ILE HG22 H N N 320 ILE HG23 H N N 321 ILE HD11 H N N 322 ILE HD12 H N N 323 ILE HD13 H N N 324 ILE HXT H N N 325 LEU N N N N 326 LEU CA C N S 327 LEU C C N N 328 LEU O O N N 329 LEU CB C N N 330 LEU CG C N N 331 LEU CD1 C N N 332 LEU CD2 C N N 333 LEU OXT O N N 334 LEU H H N N 335 LEU H2 H N N 336 LEU HA H N N 337 LEU HB2 H N N 338 LEU HB3 H N N 339 LEU HG H N N 340 LEU HD11 H N N 341 LEU HD12 H N N 342 LEU HD13 H N N 343 LEU HD21 H N N 344 LEU HD22 H N N 345 LEU HD23 H N N 346 LEU HXT H N N 347 LYS N N N N 348 LYS CA C N S 349 LYS C C N N 350 LYS O O N N 351 LYS CB C N N 352 LYS CG C N N 353 LYS CD C N N 354 LYS CE C N N 355 LYS NZ N N N 356 LYS OXT O N N 357 LYS H H N N 358 LYS H2 H N N 359 LYS HA H N N 360 LYS HB2 H N N 361 LYS HB3 H N N 362 LYS HG2 H N N 363 LYS HG3 H N N 364 LYS HD2 H N N 365 LYS HD3 H N N 366 LYS HE2 H N N 367 LYS HE3 H N N 368 LYS HZ1 H N N 369 LYS HZ2 H N N 370 LYS HZ3 H N N 371 LYS HXT H N N 372 MET N N N N 373 MET CA C N S 374 MET C C N N 375 MET O O N N 376 MET CB C N N 377 MET CG C N N 378 MET SD S N N 379 MET CE C N N 380 MET OXT O N N 381 MET H H N N 382 MET H2 H N N 383 MET HA H N N 384 MET HB2 H N N 385 MET HB3 H N N 386 MET HG2 H N N 387 MET HG3 H N N 388 MET HE1 H N N 389 MET HE2 H N N 390 MET HE3 H N N 391 MET HXT H N N 392 MN MN MN N N 393 NA NA NA N N 394 PHE N N N N 395 PHE CA C N S 396 PHE C C N N 397 PHE O O N N 398 PHE CB C N N 399 PHE CG C Y N 400 PHE CD1 C Y N 401 PHE CD2 C Y N 402 PHE CE1 C Y N 403 PHE CE2 C Y N 404 PHE CZ C Y N 405 PHE OXT O N N 406 PHE H H N N 407 PHE H2 H N N 408 PHE HA H N N 409 PHE HB2 H N N 410 PHE HB3 H N N 411 PHE HD1 H N N 412 PHE HD2 H N N 413 PHE HE1 H N N 414 PHE HE2 H N N 415 PHE HZ H N N 416 PHE HXT H N N 417 PRO N N N N 418 PRO CA C N S 419 PRO C C N N 420 PRO O O N N 421 PRO CB C N N 422 PRO CG C N N 423 PRO CD C N N 424 PRO OXT O N N 425 PRO H H N N 426 PRO HA H N N 427 PRO HB2 H N N 428 PRO HB3 H N N 429 PRO HG2 H N N 430 PRO HG3 H N N 431 PRO HD2 H N N 432 PRO HD3 H N N 433 PRO HXT H N N 434 SER N N N N 435 SER CA C N S 436 SER C C N N 437 SER O O N N 438 SER CB C N N 439 SER OG O N N 440 SER OXT O N N 441 SER H H N N 442 SER H2 H N N 443 SER HA H N N 444 SER HB2 H N N 445 SER HB3 H N N 446 SER HG H N N 447 SER HXT H N N 448 THR N N N N 449 THR CA C N S 450 THR C C N N 451 THR O O N N 452 THR CB C N R 453 THR OG1 O N N 454 THR CG2 C N N 455 THR OXT O N N 456 THR H H N N 457 THR H2 H N N 458 THR HA H N N 459 THR HB H N N 460 THR HG1 H N N 461 THR HG21 H N N 462 THR HG22 H N N 463 THR HG23 H N N 464 THR HXT H N N 465 TRP N N N N 466 TRP CA C N S 467 TRP C C N N 468 TRP O O N N 469 TRP CB C N N 470 TRP CG C Y N 471 TRP CD1 C Y N 472 TRP CD2 C Y N 473 TRP NE1 N Y N 474 TRP CE2 C Y N 475 TRP CE3 C Y N 476 TRP CZ2 C Y N 477 TRP CZ3 C Y N 478 TRP CH2 C Y N 479 TRP OXT O N N 480 TRP H H N N 481 TRP H2 H N N 482 TRP HA H N N 483 TRP HB2 H N N 484 TRP HB3 H N N 485 TRP HD1 H N N 486 TRP HE1 H N N 487 TRP HE3 H N N 488 TRP HZ2 H N N 489 TRP HZ3 H N N 490 TRP HH2 H N N 491 TRP HXT H N N 492 TYR N N N N 493 TYR CA C N S 494 TYR C C N N 495 TYR O O N N 496 TYR CB C N N 497 TYR CG C Y N 498 TYR CD1 C Y N 499 TYR CD2 C Y N 500 TYR CE1 C Y N 501 TYR CE2 C Y N 502 TYR CZ C Y N 503 TYR OH O N N 504 TYR OXT O N N 505 TYR H H N N 506 TYR H2 H N N 507 TYR HA H N N 508 TYR HB2 H N N 509 TYR HB3 H N N 510 TYR HD1 H N N 511 TYR HD2 H N N 512 TYR HE1 H N N 513 TYR HE2 H N N 514 TYR HH H N N 515 TYR HXT H N N 516 VAL N N N N 517 VAL CA C N S 518 VAL C C N N 519 VAL O O N N 520 VAL CB C N N 521 VAL CG1 C N N 522 VAL CG2 C N N 523 VAL OXT O N N 524 VAL H H N N 525 VAL H2 H N N 526 VAL HA H N N 527 VAL HB H N N 528 VAL HG11 H N N 529 VAL HG12 H N N 530 VAL HG13 H N N 531 VAL HG21 H N N 532 VAL HG22 H N N 533 VAL HG23 H N N 534 VAL HXT H N N 535 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal ALA N CA sing N N 1 ALA N H sing N N 2 ALA N H2 sing N N 3 ALA CA C sing N N 4 ALA CA CB sing N N 5 ALA CA HA sing N N 6 ALA C O doub N N 7 ALA C OXT sing N N 8 ALA CB HB1 sing N N 9 ALA CB HB2 sing N N 10 ALA CB HB3 sing N N 11 ALA OXT HXT sing N N 12 ARG N CA sing N N 13 ARG N H sing N N 14 ARG N H2 sing N N 15 ARG CA C sing N N 16 ARG CA CB sing N N 17 ARG CA HA sing N N 18 ARG C O doub N N 19 ARG C OXT sing N N 20 ARG CB CG sing N N 21 ARG CB HB2 sing N N 22 ARG CB HB3 sing N N 23 ARG CG CD sing N N 24 ARG CG HG2 sing N N 25 ARG CG HG3 sing N N 26 ARG CD NE sing N N 27 ARG CD HD2 sing N N 28 ARG CD HD3 sing N N 29 ARG NE CZ sing N N 30 ARG NE HE sing N N 31 ARG CZ NH1 sing N N 32 ARG CZ NH2 doub N N 33 ARG NH1 HH11 sing N N 34 ARG NH1 HH12 sing N N 35 ARG NH2 HH21 sing N N 36 ARG NH2 HH22 sing N N 37 ARG OXT HXT sing N N 38 ASN N CA sing N N 39 ASN N H sing N N 40 ASN N H2 sing N N 41 ASN CA C sing N N 42 ASN CA CB sing N N 43 ASN CA HA sing N N 44 ASN C O doub N N 45 ASN C OXT sing N N 46 ASN CB CG sing N N 47 ASN CB HB2 sing N N 48 ASN CB HB3 sing N N 49 ASN CG OD1 doub N N 50 ASN CG ND2 sing N N 51 ASN ND2 HD21 sing N N 52 ASN ND2 HD22 sing N N 53 ASN OXT HXT sing N N 54 ASP N CA sing N N 55 ASP N H sing N N 56 ASP N H2 sing N N 57 ASP CA C sing N N 58 ASP CA CB sing N N 59 ASP CA HA sing N N 60 ASP C O doub N N 61 ASP C OXT sing N N 62 ASP CB CG sing N N 63 ASP CB HB2 sing N N 64 ASP CB HB3 sing N N 65 ASP CG OD1 doub N N 66 ASP CG OD2 sing N N 67 ASP OD2 HD2 sing N N 68 ASP OXT HXT sing N N 69 CYS N CA sing N N 70 CYS N H sing N N 71 CYS N H2 sing N N 72 CYS CA C sing N N 73 CYS CA CB sing N N 74 CYS CA HA sing N N 75 CYS C O doub N N 76 CYS C OXT sing N N 77 CYS CB SG sing N N 78 CYS CB HB2 sing N N 79 CYS CB HB3 sing N N 80 CYS SG HG sing N N 81 CYS OXT HXT sing N N 82 DA OP3 P sing N N 83 DA OP3 HOP3 sing N N 84 DA P OP1 doub N N 85 DA P OP2 sing N N 86 DA P "O5'" sing N N 87 DA OP2 HOP2 sing N N 88 DA "O5'" "C5'" sing N N 89 DA "C5'" "C4'" sing N N 90 DA "C5'" "H5'" sing N N 91 DA "C5'" "H5''" sing N N 92 DA "C4'" "O4'" sing N N 93 DA "C4'" "C3'" sing N N 94 DA "C4'" "H4'" sing N N 95 DA "O4'" "C1'" sing N N 96 DA "C3'" "O3'" sing N N 97 DA "C3'" "C2'" sing N N 98 DA "C3'" "H3'" sing N N 99 DA "O3'" "HO3'" sing N N 100 DA "C2'" "C1'" sing N N 101 DA "C2'" "H2'" sing N N 102 DA "C2'" "H2''" sing N N 103 DA "C1'" N9 sing N N 104 DA "C1'" "H1'" sing N N 105 DA N9 C8 sing Y N 106 DA N9 C4 sing Y N 107 DA C8 N7 doub Y N 108 DA C8 H8 sing N N 109 DA N7 C5 sing Y N 110 DA C5 C6 sing Y N 111 DA C5 C4 doub Y N 112 DA C6 N6 sing N N 113 DA C6 N1 doub Y N 114 DA N6 H61 sing N N 115 DA N6 H62 sing N N 116 DA N1 C2 sing Y N 117 DA C2 N3 doub Y N 118 DA C2 H2 sing N N 119 DA N3 C4 sing Y N 120 DC OP3 P sing N N 121 DC OP3 HOP3 sing N N 122 DC P OP1 doub N N 123 DC P OP2 sing N N 124 DC P "O5'" sing N N 125 DC OP2 HOP2 sing N N 126 DC "O5'" "C5'" sing N N 127 DC "C5'" "C4'" sing N N 128 DC "C5'" "H5'" sing N N 129 DC "C5'" "H5''" sing N N 130 DC "C4'" "O4'" sing N N 131 DC "C4'" "C3'" sing N N 132 DC "C4'" "H4'" sing N N 133 DC "O4'" "C1'" sing N N 134 DC "C3'" "O3'" sing N N 135 DC "C3'" "C2'" sing N N 136 DC "C3'" "H3'" sing N N 137 DC "O3'" "HO3'" sing N N 138 DC "C2'" "C1'" sing N N 139 DC "C2'" "H2'" sing N N 140 DC "C2'" "H2''" sing N N 141 DC "C1'" N1 sing N N 142 DC "C1'" "H1'" sing N N 143 DC N1 C2 sing N N 144 DC N1 C6 sing N N 145 DC C2 O2 doub N N 146 DC C2 N3 sing N N 147 DC N3 C4 doub N N 148 DC C4 N4 sing N N 149 DC C4 C5 sing N N 150 DC N4 H41 sing N N 151 DC N4 H42 sing N N 152 DC C5 C6 doub N N 153 DC C5 H5 sing N N 154 DC C6 H6 sing N N 155 DG OP3 P sing N N 156 DG OP3 HOP3 sing N N 157 DG P OP1 doub N N 158 DG P OP2 sing N N 159 DG P "O5'" sing N N 160 DG OP2 HOP2 sing N N 161 DG "O5'" "C5'" sing N N 162 DG "C5'" "C4'" sing N N 163 DG "C5'" "H5'" sing N N 164 DG "C5'" "H5''" sing N N 165 DG "C4'" "O4'" sing N N 166 DG "C4'" "C3'" sing N N 167 DG "C4'" "H4'" sing N N 168 DG "O4'" "C1'" sing N N 169 DG "C3'" "O3'" sing N N 170 DG "C3'" "C2'" sing N N 171 DG "C3'" "H3'" sing N N 172 DG "O3'" "HO3'" sing N N 173 DG "C2'" "C1'" sing N N 174 DG "C2'" "H2'" sing N N 175 DG "C2'" "H2''" sing N N 176 DG "C1'" N9 sing N N 177 DG "C1'" "H1'" sing N N 178 DG N9 C8 sing Y N 179 DG N9 C4 sing Y N 180 DG C8 N7 doub Y N 181 DG C8 H8 sing N N 182 DG N7 C5 sing Y N 183 DG C5 C6 sing N N 184 DG C5 C4 doub Y N 185 DG C6 O6 doub N N 186 DG C6 N1 sing N N 187 DG N1 C2 sing N N 188 DG N1 H1 sing N N 189 DG C2 N2 sing N N 190 DG C2 N3 doub N N 191 DG N2 H21 sing N N 192 DG N2 H22 sing N N 193 DG N3 C4 sing N N 194 DT OP3 P sing N N 195 DT OP3 HOP3 sing N N 196 DT P OP1 doub N N 197 DT P OP2 sing N N 198 DT P "O5'" sing N N 199 DT OP2 HOP2 sing N N 200 DT "O5'" "C5'" sing N N 201 DT "C5'" "C4'" sing N N 202 DT "C5'" "H5'" sing N N 203 DT "C5'" "H5''" sing N N 204 DT "C4'" "O4'" sing N N 205 DT "C4'" "C3'" sing N N 206 DT "C4'" "H4'" sing N N 207 DT "O4'" "C1'" sing N N 208 DT "C3'" "O3'" sing N N 209 DT "C3'" "C2'" sing N N 210 DT "C3'" "H3'" sing N N 211 DT "O3'" "HO3'" sing N N 212 DT "C2'" "C1'" sing N N 213 DT "C2'" "H2'" sing N N 214 DT "C2'" "H2''" sing N N 215 DT "C1'" N1 sing N N 216 DT "C1'" "H1'" sing N N 217 DT N1 C2 sing N N 218 DT N1 C6 sing N N 219 DT C2 O2 doub N N 220 DT C2 N3 sing N N 221 DT N3 C4 sing N N 222 DT N3 H3 sing N N 223 DT C4 O4 doub N N 224 DT C4 C5 sing N N 225 DT C5 C7 sing N N 226 DT C5 C6 doub N N 227 DT C7 H71 sing N N 228 DT C7 H72 sing N N 229 DT C7 H73 sing N N 230 DT C6 H6 sing N N 231 GLN N CA sing N N 232 GLN N H sing N N 233 GLN N H2 sing N N 234 GLN CA C sing N N 235 GLN CA CB sing N N 236 GLN CA HA sing N N 237 GLN C O doub N N 238 GLN C OXT sing N N 239 GLN CB CG sing N N 240 GLN CB HB2 sing N N 241 GLN CB HB3 sing N N 242 GLN CG CD sing N N 243 GLN CG HG2 sing N N 244 GLN CG HG3 sing N N 245 GLN CD OE1 doub N N 246 GLN CD NE2 sing N N 247 GLN NE2 HE21 sing N N 248 GLN NE2 HE22 sing N N 249 GLN OXT HXT sing N N 250 GLU N CA sing N N 251 GLU N H sing N N 252 GLU N H2 sing N N 253 GLU CA C sing N N 254 GLU CA CB sing N N 255 GLU CA HA sing N N 256 GLU C O doub N N 257 GLU C OXT sing N N 258 GLU CB CG sing N N 259 GLU CB HB2 sing N N 260 GLU CB HB3 sing N N 261 GLU CG CD sing N N 262 GLU CG HG2 sing N N 263 GLU CG HG3 sing N N 264 GLU CD OE1 doub N N 265 GLU CD OE2 sing N N 266 GLU OE2 HE2 sing N N 267 GLU OXT HXT sing N N 268 GLY N CA sing N N 269 GLY N H sing N N 270 GLY N H2 sing N N 271 GLY CA C sing N N 272 GLY CA HA2 sing N N 273 GLY CA HA3 sing N N 274 GLY C O doub N N 275 GLY C OXT sing N N 276 GLY OXT HXT sing N N 277 HIS N CA sing N N 278 HIS N H sing N N 279 HIS N H2 sing N N 280 HIS CA C sing N N 281 HIS CA CB sing N N 282 HIS CA HA sing N N 283 HIS C O doub N N 284 HIS C OXT sing N N 285 HIS CB CG sing N N 286 HIS CB HB2 sing N N 287 HIS CB HB3 sing N N 288 HIS CG ND1 sing Y N 289 HIS CG CD2 doub Y N 290 HIS ND1 CE1 doub Y N 291 HIS ND1 HD1 sing N N 292 HIS CD2 NE2 sing Y N 293 HIS CD2 HD2 sing N N 294 HIS CE1 NE2 sing Y N 295 HIS CE1 HE1 sing N N 296 HIS NE2 HE2 sing N N 297 HIS OXT HXT sing N N 298 HOH O H1 sing N N 299 HOH O H2 sing N N 300 ILE N CA sing N N 301 ILE N H sing N N 302 ILE N H2 sing N N 303 ILE CA C sing N N 304 ILE CA CB sing N N 305 ILE CA HA sing N N 306 ILE C O doub N N 307 ILE C OXT sing N N 308 ILE CB CG1 sing N N 309 ILE CB CG2 sing N N 310 ILE CB HB sing N N 311 ILE CG1 CD1 sing N N 312 ILE CG1 HG12 sing N N 313 ILE CG1 HG13 sing N N 314 ILE CG2 HG21 sing N N 315 ILE CG2 HG22 sing N N 316 ILE CG2 HG23 sing N N 317 ILE CD1 HD11 sing N N 318 ILE CD1 HD12 sing N N 319 ILE CD1 HD13 sing N N 320 ILE OXT HXT sing N N 321 LEU N CA sing N N 322 LEU N H sing N N 323 LEU N H2 sing N N 324 LEU CA C sing N N 325 LEU CA CB sing N N 326 LEU CA HA sing N N 327 LEU C O doub N N 328 LEU C OXT sing N N 329 LEU CB CG sing N N 330 LEU CB HB2 sing N N 331 LEU CB HB3 sing N N 332 LEU CG CD1 sing N N 333 LEU CG CD2 sing N N 334 LEU CG HG sing N N 335 LEU CD1 HD11 sing N N 336 LEU CD1 HD12 sing N N 337 LEU CD1 HD13 sing N N 338 LEU CD2 HD21 sing N N 339 LEU CD2 HD22 sing N N 340 LEU CD2 HD23 sing N N 341 LEU OXT HXT sing N N 342 LYS N CA sing N N 343 LYS N H sing N N 344 LYS N H2 sing N N 345 LYS CA C sing N N 346 LYS CA CB sing N N 347 LYS CA HA sing N N 348 LYS C O doub N N 349 LYS C OXT sing N N 350 LYS CB CG sing N N 351 LYS CB HB2 sing N N 352 LYS CB HB3 sing N N 353 LYS CG CD sing N N 354 LYS CG HG2 sing N N 355 LYS CG HG3 sing N N 356 LYS CD CE sing N N 357 LYS CD HD2 sing N N 358 LYS CD HD3 sing N N 359 LYS CE NZ sing N N 360 LYS CE HE2 sing N N 361 LYS CE HE3 sing N N 362 LYS NZ HZ1 sing N N 363 LYS NZ HZ2 sing N N 364 LYS NZ HZ3 sing N N 365 LYS OXT HXT sing N N 366 MET N CA sing N N 367 MET N H sing N N 368 MET N H2 sing N N 369 MET CA C sing N N 370 MET CA CB sing N N 371 MET CA HA sing N N 372 MET C O doub N N 373 MET C OXT sing N N 374 MET CB CG sing N N 375 MET CB HB2 sing N N 376 MET CB HB3 sing N N 377 MET CG SD sing N N 378 MET CG HG2 sing N N 379 MET CG HG3 sing N N 380 MET SD CE sing N N 381 MET CE HE1 sing N N 382 MET CE HE2 sing N N 383 MET CE HE3 sing N N 384 MET OXT HXT sing N N 385 PHE N CA sing N N 386 PHE N H sing N N 387 PHE N H2 sing N N 388 PHE CA C sing N N 389 PHE CA CB sing N N 390 PHE CA HA sing N N 391 PHE C O doub N N 392 PHE C OXT sing N N 393 PHE CB CG sing N N 394 PHE CB HB2 sing N N 395 PHE CB HB3 sing N N 396 PHE CG CD1 doub Y N 397 PHE CG CD2 sing Y N 398 PHE CD1 CE1 sing Y N 399 PHE CD1 HD1 sing N N 400 PHE CD2 CE2 doub Y N 401 PHE CD2 HD2 sing N N 402 PHE CE1 CZ doub Y N 403 PHE CE1 HE1 sing N N 404 PHE CE2 CZ sing Y N 405 PHE CE2 HE2 sing N N 406 PHE CZ HZ sing N N 407 PHE OXT HXT sing N N 408 PRO N CA sing N N 409 PRO N CD sing N N 410 PRO N H sing N N 411 PRO CA C sing N N 412 PRO CA CB sing N N 413 PRO CA HA sing N N 414 PRO C O doub N N 415 PRO C OXT sing N N 416 PRO CB CG sing N N 417 PRO CB HB2 sing N N 418 PRO CB HB3 sing N N 419 PRO CG CD sing N N 420 PRO CG HG2 sing N N 421 PRO CG HG3 sing N N 422 PRO CD HD2 sing N N 423 PRO CD HD3 sing N N 424 PRO OXT HXT sing N N 425 SER N CA sing N N 426 SER N H sing N N 427 SER N H2 sing N N 428 SER CA C sing N N 429 SER CA CB sing N N 430 SER CA HA sing N N 431 SER C O doub N N 432 SER C OXT sing N N 433 SER CB OG sing N N 434 SER CB HB2 sing N N 435 SER CB HB3 sing N N 436 SER OG HG sing N N 437 SER OXT HXT sing N N 438 THR N CA sing N N 439 THR N H sing N N 440 THR N H2 sing N N 441 THR CA C sing N N 442 THR CA CB sing N N 443 THR CA HA sing N N 444 THR C O doub N N 445 THR C OXT sing N N 446 THR CB OG1 sing N N 447 THR CB CG2 sing N N 448 THR CB HB sing N N 449 THR OG1 HG1 sing N N 450 THR CG2 HG21 sing N N 451 THR CG2 HG22 sing N N 452 THR CG2 HG23 sing N N 453 THR OXT HXT sing N N 454 TRP N CA sing N N 455 TRP N H sing N N 456 TRP N H2 sing N N 457 TRP CA C sing N N 458 TRP CA CB sing N N 459 TRP CA HA sing N N 460 TRP C O doub N N 461 TRP C OXT sing N N 462 TRP CB CG sing N N 463 TRP CB HB2 sing N N 464 TRP CB HB3 sing N N 465 TRP CG CD1 doub Y N 466 TRP CG CD2 sing Y N 467 TRP CD1 NE1 sing Y N 468 TRP CD1 HD1 sing N N 469 TRP CD2 CE2 doub Y N 470 TRP CD2 CE3 sing Y N 471 TRP NE1 CE2 sing Y N 472 TRP NE1 HE1 sing N N 473 TRP CE2 CZ2 sing Y N 474 TRP CE3 CZ3 doub Y N 475 TRP CE3 HE3 sing N N 476 TRP CZ2 CH2 doub Y N 477 TRP CZ2 HZ2 sing N N 478 TRP CZ3 CH2 sing Y N 479 TRP CZ3 HZ3 sing N N 480 TRP CH2 HH2 sing N N 481 TRP OXT HXT sing N N 482 TYR N CA sing N N 483 TYR N H sing N N 484 TYR N H2 sing N N 485 TYR CA C sing N N 486 TYR CA CB sing N N 487 TYR CA HA sing N N 488 TYR C O doub N N 489 TYR C OXT sing N N 490 TYR CB CG sing N N 491 TYR CB HB2 sing N N 492 TYR CB HB3 sing N N 493 TYR CG CD1 doub Y N 494 TYR CG CD2 sing Y N 495 TYR CD1 CE1 sing Y N 496 TYR CD1 HD1 sing N N 497 TYR CD2 CE2 doub Y N 498 TYR CD2 HD2 sing N N 499 TYR CE1 CZ doub Y N 500 TYR CE1 HE1 sing N N 501 TYR CE2 CZ sing Y N 502 TYR CE2 HE2 sing N N 503 TYR CZ OH sing N N 504 TYR OH HH sing N N 505 TYR OXT HXT sing N N 506 VAL N CA sing N N 507 VAL N H sing N N 508 VAL N H2 sing N N 509 VAL CA C sing N N 510 VAL CA CB sing N N 511 VAL CA HA sing N N 512 VAL C O doub N N 513 VAL C OXT sing N N 514 VAL CB CG1 sing N N 515 VAL CB CG2 sing N N 516 VAL CB HB sing N N 517 VAL CG1 HG11 sing N N 518 VAL CG1 HG12 sing N N 519 VAL CG1 HG13 sing N N 520 VAL CG2 HG21 sing N N 521 VAL CG2 HG22 sing N N 522 VAL CG2 HG23 sing N N 523 VAL OXT HXT sing N N 524 # loop_ _ndb_struct_conf_na.entry_id _ndb_struct_conf_na.feature 4LVK 'double helix' 4LVK 'b-form double helix' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 B DA 1 1_555 C DT 7 1_555 0.087 -0.029 0.174 0.617 -0.559 0.488 1 B_DA1:DT18_C B 1 ? C 18 ? 20 1 1 B DC 2 1_555 C DG 6 1_555 0.247 -0.036 0.177 10.430 -23.729 1.009 2 B_DC2:DG17_C B 2 ? C 17 ? 19 1 1 B DT 3 1_555 C DA 5 1_555 -0.019 -0.016 0.215 -17.829 -14.270 2.166 3 B_DT3:DA16_C B 3 ? C 16 ? 20 1 1 B DT 4 1_555 C DA 4 1_555 0.406 0.020 -0.204 -12.418 -27.268 0.098 4 B_DT4:DA15_C B 4 ? C 15 ? 20 1 1 B DT 5 1_555 C DA 3 1_555 0.009 -0.148 0.027 -23.709 -12.340 4.676 5 B_DT5:DA14_C B 5 ? C 14 ? 20 1 1 B DA 6 1_555 C DT 2 1_555 -0.223 0.097 -0.297 -6.913 -5.228 2.795 6 B_DA6:DT13_C B 6 ? C 13 ? 20 1 1 B DT 7 1_555 C DA 1 1_555 0.622 -0.366 0.113 -2.467 -5.369 1.277 7 B_DT7:DA12_C B 7 ? C 12 ? 20 1 1 C DT 12 1_555 C DG 15 1_555 2.398 -0.490 -0.421 1.728 -3.547 0.462 8 C_DT23:DG26_C C 23 ? C 26 ? 28 1 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 B DA 1 1_555 C DT 7 1_555 B DC 2 1_555 C DG 6 1_555 -0.208 -0.689 3.200 -1.818 4.843 29.670 -2.280 0.042 3.059 9.368 3.516 30.108 1 BB_DA1DC2:DG17DT18_CC B 1 ? C 18 ? B 2 ? C 17 ? 1 B DC 2 1_555 C DG 6 1_555 B DT 3 1_555 C DA 5 1_555 0.325 -0.571 3.789 4.036 4.505 41.997 -1.318 0.024 3.725 6.246 -5.596 42.411 2 BB_DC2DT3:DA16DG17_CC B 2 ? C 17 ? B 3 ? C 16 ? 1 B DT 3 1_555 C DA 5 1_555 B DT 4 1_555 C DA 4 1_555 -0.812 -0.022 3.062 1.040 -2.486 37.169 0.273 1.400 3.034 -3.894 -1.628 37.263 3 BB_DT3DT4:DA15DA16_CC B 3 ? C 16 ? B 4 ? C 15 ? 1 B DT 4 1_555 C DA 4 1_555 B DT 5 1_555 C DA 3 1_555 0.822 0.762 3.614 0.388 -0.775 38.275 1.269 -1.199 3.606 -1.182 -0.592 38.285 4 BB_DT4DT5:DA14DA15_CC B 4 ? C 15 ? B 5 ? C 14 ? 1 B DT 5 1_555 C DA 3 1_555 B DA 6 1_555 C DT 2 1_555 -0.030 0.691 2.973 0.663 9.305 24.850 -0.824 0.231 3.027 20.713 -1.477 26.518 5 BB_DT5DA6:DT13DA14_CC B 5 ? C 14 ? B 6 ? C 13 ? 1 B DA 6 1_555 C DT 2 1_555 B DT 7 1_555 C DA 1 1_555 0.659 -0.390 3.335 -2.561 -3.788 33.763 -0.051 -1.540 3.301 -6.485 4.385 34.062 6 BB_DA6DT7:DA12DT13_CC B 6 ? C 13 ? B 7 ? C 12 ? # _atom_sites.entry_id 4LVK _atom_sites.fract_transf_matrix[1][1] 0.008870 _atom_sites.fract_transf_matrix[1][2] 0.005121 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.010242 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.010910 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C MN N NA O P S # loop_