HEADER TRANSFERASE 28-JUL-13 4LWP TITLE CRYSTAL STRUCTURE OF PRMT6-SAH COMPND MOL_ID: 1; COMPND 2 MOLECULE: ARGININE N-METHYLTRANSFERASE, PUTATIVE; COMPND 3 CHAIN: B, A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: TRYPANOSOMA BRUCEI BRUCEI; SOURCE 3 ORGANISM_TAXID: 999953; SOURCE 4 STRAIN: 927/4 GUTAT10.1; SOURCE 5 GENE: TB927.5.3960; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID KEYWDS SAM BINDING DOMAIN, ARGININE METHYLATION, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR Y.ZHU,C.WANG,Y.SHI,M.TENG REVDAT 2 20-MAR-24 4LWP 1 REMARK REVDAT 1 19-FEB-14 4LWP 0 JRNL AUTH C.WANG,Y.ZHU,J.CHEN,X.LI,J.PENG,J.CHEN,Y.ZOU,Z.ZHANG,H.JIN, JRNL AUTH 2 P.YANG,J.WU,L.NIU,Q.GONG,M.TENG,Y.SHI JRNL TITL CRYSTAL STRUCTURE OF ARGININE METHYLTRANSFERASE 6 FROM JRNL TITL 2 TRYPANOSOMA BRUCEI JRNL REF PLOS ONE V. 9 87267 2014 JRNL REFN ESSN 1932-6203 JRNL PMID 24498306 JRNL DOI 10.1371/JOURNAL.PONE.0087267 REMARK 2 REMARK 2 RESOLUTION. 2.35 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE: 1.8.2_1309) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.35 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 47.60 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 3 NUMBER OF REFLECTIONS : 31792 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.207 REMARK 3 R VALUE (WORKING SET) : 0.204 REMARK 3 FREE R VALUE : 0.249 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.050 REMARK 3 FREE R VALUE TEST SET COUNT : 1604 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 47.6056 - 5.2319 0.99 2883 148 0.1990 0.2173 REMARK 3 2 5.2319 - 4.1535 1.00 2749 170 0.1733 0.2315 REMARK 3 3 4.1535 - 3.6287 1.00 2762 147 0.1821 0.2160 REMARK 3 4 3.6287 - 3.2970 1.00 2770 139 0.2000 0.2238 REMARK 3 5 3.2970 - 3.0607 1.00 2736 139 0.2212 0.2792 REMARK 3 6 3.0607 - 2.8803 1.00 2704 159 0.2277 0.2834 REMARK 3 7 2.8803 - 2.7361 1.00 2747 138 0.2440 0.3272 REMARK 3 8 2.7361 - 2.6170 1.00 2742 134 0.2320 0.3038 REMARK 3 9 2.6170 - 2.5162 1.00 2708 151 0.2347 0.2908 REMARK 3 10 2.5162 - 2.4294 1.00 2738 127 0.2363 0.2821 REMARK 3 11 2.4294 - 2.3534 0.98 2649 152 0.2339 0.3105 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.310 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 26.090 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 38.79 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 28.49 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.009 5368 REMARK 3 ANGLE : 1.198 7298 REMARK 3 CHIRALITY : 0.048 843 REMARK 3 PLANARITY : 0.006 923 REMARK 3 DIHEDRAL : 14.282 1875 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : 1 REMARK 3 NCS GROUP : 1 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4LWP COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 13-AUG-13. REMARK 100 THE DEPOSITION ID IS D_1000081180. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL REMARK 200 TEMPERATURE (KELVIN) : 298 REMARK 200 PH : 5.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU RUH3R REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.54 REMARK 200 MONOCHROMATOR : NI FILTER REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : MAR SCANNER 345 MM PLATE REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 31792 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.350 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : NULL REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 46.47 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.30 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 100 MM CITRATE PH 5.5, 20% PEG3000, REMARK 280 VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 2 2 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -X,Y,-Z+1/2 REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 68.93250 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 68.93250 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 50.71400 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 54.23250 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 50.71400 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 54.23250 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 68.93250 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 50.71400 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 54.23250 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 68.93250 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 50.71400 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 54.23250 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4550 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 28280 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -22.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH B 501 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET B 1 REMARK 465 GLU B 2 REMARK 465 SER B 3 REMARK 465 GLY B 4 REMARK 465 GLY B 5 REMARK 465 PHE B 6 REMARK 465 ALA B 7 REMARK 465 GLU B 8 REMARK 465 ASP B 9 REMARK 465 TYR B 10 REMARK 465 ASP B 11 REMARK 465 PRO B 12 REMARK 465 ASN B 13 REMARK 465 SER B 14 REMARK 465 SER B 15 REMARK 465 LEU B 16 REMARK 465 HIS B 17 REMARK 465 HIS B 18 REMARK 465 GLN B 19 REMARK 465 TYR B 20 REMARK 465 TYR B 21 REMARK 465 GLU B 22 REMARK 465 SER B 23 REMARK 465 TYR B 24 REMARK 465 ALA B 228 REMARK 465 SER B 229 REMARK 465 MET A 1 REMARK 465 GLU A 2 REMARK 465 SER A 3 REMARK 465 GLY A 4 REMARK 465 GLY A 5 REMARK 465 PHE A 6 REMARK 465 ALA A 7 REMARK 465 GLU A 8 REMARK 465 ASP A 9 REMARK 465 TYR A 10 REMARK 465 ASP A 11 REMARK 465 PRO A 12 REMARK 465 ASN A 13 REMARK 465 SER A 14 REMARK 465 SER A 15 REMARK 465 LEU A 16 REMARK 465 HIS A 17 REMARK 465 HIS A 18 REMARK 465 GLN A 19 REMARK 465 TYR A 20 REMARK 465 TYR A 21 REMARK 465 GLU A 22 REMARK 465 SER A 23 REMARK 465 TYR A 24 REMARK 465 SER A 25 REMARK 465 ALA A 228 REMARK 465 SER A 229 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 SER B 25 OG REMARK 470 ARG B 44 CD NE CZ NH1 NH2 REMARK 470 LYS B 45 NZ REMARK 470 GLU B 48 CG CD OE1 OE2 REMARK 470 LYS B 56 CE NZ REMARK 470 ARG B 74 CG CD NE CZ NH1 NH2 REMARK 470 ASP B 100 OD1 OD2 REMARK 470 LYS B 104 CD CE NZ REMARK 470 ARG B 126 CZ NH1 NH2 REMARK 470 LYS B 128 CB CG CD CE NZ REMARK 470 LYS B 133 CE NZ REMARK 470 GLN B 165 CG CD OE1 NE2 REMARK 470 ARG B 200 CG CD NE CZ NH1 NH2 REMARK 470 GLU B 222 CG CD OE1 OE2 REMARK 470 GLU B 226 O CG CD OE1 OE2 REMARK 470 GLN B 227 CG CD OE1 NE2 REMARK 470 ARG B 282 CG CD NE CZ NH1 NH2 REMARK 470 GLU B 283 CG CD OE1 OE2 REMARK 470 SER B 286 OG REMARK 470 GLU B 287 CG CD OE1 OE2 REMARK 470 ARG B 313 CZ NH1 NH2 REMARK 470 ARG B 328 CG CD NE CZ NH1 NH2 REMARK 470 GLU B 329 CB CG CD OE1 OE2 REMARK 470 LEU B 335 CG CD1 CD2 REMARK 470 LYS B 356 NZ REMARK 470 GLU B 364 CG CD OE1 OE2 REMARK 470 LEU B 367 O REMARK 470 GLN A 49 CG CD OE1 NE2 REMARK 470 SER A 52 OG REMARK 470 ILE A 53 CD1 REMARK 470 ILE A 83 CD1 REMARK 470 LYS A 104 CE NZ REMARK 470 ILE A 105 CD1 REMARK 470 ASN A 122 CG OD1 ND2 REMARK 470 ARG A 126 CZ NH1 NH2 REMARK 470 LYS A 128 CG CD CE NZ REMARK 470 LYS A 133 CB CG CD CE NZ REMARK 470 GLN A 175 CD OE1 NE2 REMARK 470 ILE A 177 CD1 REMARK 470 LYS A 194 CG CD CE NZ REMARK 470 ARG A 200 CG CD NE CZ NH1 NH2 REMARK 470 ILE A 219 CD1 REMARK 470 GLU A 226 O REMARK 470 GLN A 227 CG CD OE1 NE2 REMARK 470 LEU A 235 CG CD1 CD2 REMARK 470 LYS A 272 CE NZ REMARK 470 GLU A 273 OE1 OE2 REMARK 470 SER A 286 OG REMARK 470 GLU A 287 CG CD OE1 OE2 REMARK 470 ARG A 313 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 320 CE NZ REMARK 470 ARG A 328 CZ NH1 NH2 REMARK 470 GLU A 329 CB CG CD OE1 OE2 REMARK 470 GLU A 333 CG CD OE1 OE2 REMARK 470 LEU A 335 CG CD1 CD2 REMARK 470 LYS A 356 CG CD CE NZ REMARK 470 ARG A 359 NE CZ NH1 NH2 REMARK 470 GLU A 364 CG CD OE1 OE2 REMARK 470 GLU A 366 CG CD OE1 OE2 REMARK 470 LEU A 367 O REMARK 470 LYS A 368 CB CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 TYR B 147 49.27 33.77 REMARK 500 LEU B 148 -26.83 69.21 REMARK 500 TYR B 201 -60.92 -133.03 REMARK 500 GLU B 226 59.98 -94.46 REMARK 500 SER B 262 43.94 -140.07 REMARK 500 LYS B 320 -141.03 52.96 REMARK 500 TYR A 147 44.17 34.64 REMARK 500 LEU A 148 -23.59 70.15 REMARK 500 TYR A 201 -59.17 -141.37 REMARK 500 GLU A 226 67.44 -103.47 REMARK 500 SER A 262 45.06 -140.93 REMARK 500 LYS A 320 -140.60 52.04 REMARK 500 REMARK 500 REMARK: NULL REMARK 610 REMARK 610 MISSING HETEROATOM REMARK 610 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 610 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 610 I=INSERTION CODE): REMARK 610 M RES C SSEQI REMARK 610 PGE A 405 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE IOD B 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE IOD B 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE IOD B 404 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE IOD B 405 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SAH B 407 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SAH A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE IOD A 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE IOD A 403 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE IOD A 404 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PGE A 405 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4LWO RELATED DB: PDB DBREF 4LWP B 1 368 UNP Q57U70 Q57U70_TRYB2 1 368 DBREF 4LWP A 1 368 UNP Q57U70 Q57U70_TRYB2 1 368 SEQRES 1 B 368 MET GLU SER GLY GLY PHE ALA GLU ASP TYR ASP PRO ASN SEQRES 2 B 368 SER SER LEU HIS HIS GLN TYR TYR GLU SER TYR SER ASP SEQRES 3 B 368 LEU ALA VAL HIS ARG LEU MET LEU GLU ASP ALA GLN ARG SEQRES 4 B 368 MET SER PHE TYR ARG LYS SER ILE GLU GLN SER ALA SER SEQRES 5 B 368 ILE GLU GLY LYS VAL VAL VAL ASP VAL GLY SER GLY THR SEQRES 6 B 368 GLY ILE LEU SER MET TRP ALA ALA ARG ALA GLY ALA LYS SEQRES 7 B 368 HIS VAL PHE SER ILE GLU ALA SER SER LEU SER GLU PHE SEQRES 8 B 368 GLN ILE GLY VAL VAL GLU ASP ASN ASP LEU SER THR LYS SEQRES 9 B 368 ILE THR VAL LEU GLY ASP THR VAL GLU ASN ILE ILE ALA SEQRES 10 B 368 GLY GLY VAL ALA ASN PHE VAL ASN ARG HIS LYS ALA LYS SEQRES 11 B 368 LEU GLY LYS CYS GLY VAL ALA VAL LEU LEU SER GLU TRP SEQRES 12 B 368 MET GLY PHE TYR LEU PHE HIS GLU GLY MET LEU PRO SER SEQRES 13 B 368 VAL ILE ARG ALA ARG ASN PHE PHE GLN ASP VAL ASN ALA SEQRES 14 B 368 ALA LEU GLY VAL LEU GLN PRO ILE GLU MET ILE PRO GLU SEQRES 15 B 368 ARG ALA THR VAL PHE VAL ALA PRO ILE THR CYS LYS PRO SEQRES 16 B 368 TYR TYR VAL GLN ARG TYR LYS ASN PHE TRP ARG ASP VAL SEQRES 17 B 368 ASP GLY LEU ASP PHE SER ARG TYR GLY ARG ILE GLU TYR SEQRES 18 B 368 GLU VAL TYR LEU GLU GLN ALA SER PRO LEU VAL GLU CYS SEQRES 19 B 368 LEU PRO PRO LEU CYS LEU LEU HIS GLU GLY LEU SER LEU SEQRES 20 B 368 ILE GLU LEU ASN LEU SER THR VAL GLN GLU GLU VAL LEU SEQRES 21 B 368 THR SER LEU HIS ASN THR VAL HIS PHE ASP LEU LYS GLU SEQRES 22 B 368 SER ALA GLU PHE GLN GLN HIS ALA ARG GLU ALA GLY SER SEQRES 23 B 368 GLU GLY ARG VAL SER VAL ASP GLY PHE THR VAL TRP PHE SEQRES 24 B 368 ASP VAL SER TYR GLY ALA HIS THR LEU SER THR SER PRO SEQRES 25 B 368 ARG SER PRO SER THR HIS TRP LYS GLN THR THR ILE LEU SEQRES 26 B 368 LEU PRO ARG GLU ALA ARG ASN GLU GLU LEU VAL SER PHE SEQRES 27 B 368 PRO VAL GLU GLY GLY GLU LEU GLY VAL GLU MET HIS ILE SEQRES 28 B 368 SER ALA SER ASP LYS THR LEU ARG PHE TYR THR ILE GLU SEQRES 29 B 368 LEU GLU LEU LYS SEQRES 1 A 368 MET GLU SER GLY GLY PHE ALA GLU ASP TYR ASP PRO ASN SEQRES 2 A 368 SER SER LEU HIS HIS GLN TYR TYR GLU SER TYR SER ASP SEQRES 3 A 368 LEU ALA VAL HIS ARG LEU MET LEU GLU ASP ALA GLN ARG SEQRES 4 A 368 MET SER PHE TYR ARG LYS SER ILE GLU GLN SER ALA SER SEQRES 5 A 368 ILE GLU GLY LYS VAL VAL VAL ASP VAL GLY SER GLY THR SEQRES 6 A 368 GLY ILE LEU SER MET TRP ALA ALA ARG ALA GLY ALA LYS SEQRES 7 A 368 HIS VAL PHE SER ILE GLU ALA SER SER LEU SER GLU PHE SEQRES 8 A 368 GLN ILE GLY VAL VAL GLU ASP ASN ASP LEU SER THR LYS SEQRES 9 A 368 ILE THR VAL LEU GLY ASP THR VAL GLU ASN ILE ILE ALA SEQRES 10 A 368 GLY GLY VAL ALA ASN PHE VAL ASN ARG HIS LYS ALA LYS SEQRES 11 A 368 LEU GLY LYS CYS GLY VAL ALA VAL LEU LEU SER GLU TRP SEQRES 12 A 368 MET GLY PHE TYR LEU PHE HIS GLU GLY MET LEU PRO SER SEQRES 13 A 368 VAL ILE ARG ALA ARG ASN PHE PHE GLN ASP VAL ASN ALA SEQRES 14 A 368 ALA LEU GLY VAL LEU GLN PRO ILE GLU MET ILE PRO GLU SEQRES 15 A 368 ARG ALA THR VAL PHE VAL ALA PRO ILE THR CYS LYS PRO SEQRES 16 A 368 TYR TYR VAL GLN ARG TYR LYS ASN PHE TRP ARG ASP VAL SEQRES 17 A 368 ASP GLY LEU ASP PHE SER ARG TYR GLY ARG ILE GLU TYR SEQRES 18 A 368 GLU VAL TYR LEU GLU GLN ALA SER PRO LEU VAL GLU CYS SEQRES 19 A 368 LEU PRO PRO LEU CYS LEU LEU HIS GLU GLY LEU SER LEU SEQRES 20 A 368 ILE GLU LEU ASN LEU SER THR VAL GLN GLU GLU VAL LEU SEQRES 21 A 368 THR SER LEU HIS ASN THR VAL HIS PHE ASP LEU LYS GLU SEQRES 22 A 368 SER ALA GLU PHE GLN GLN HIS ALA ARG GLU ALA GLY SER SEQRES 23 A 368 GLU GLY ARG VAL SER VAL ASP GLY PHE THR VAL TRP PHE SEQRES 24 A 368 ASP VAL SER TYR GLY ALA HIS THR LEU SER THR SER PRO SEQRES 25 A 368 ARG SER PRO SER THR HIS TRP LYS GLN THR THR ILE LEU SEQRES 26 A 368 LEU PRO ARG GLU ALA ARG ASN GLU GLU LEU VAL SER PHE SEQRES 27 A 368 PRO VAL GLU GLY GLY GLU LEU GLY VAL GLU MET HIS ILE SEQRES 28 A 368 SER ALA SER ASP LYS THR LEU ARG PHE TYR THR ILE GLU SEQRES 29 A 368 LEU GLU LEU LYS HET IOD B 401 1 HET IOD B 402 1 HET IOD B 403 1 HET IOD B 404 1 HET IOD B 405 1 HET IOD B 406 1 HET SAH B 407 26 HET SAH A 401 26 HET IOD A 402 1 HET IOD A 403 1 HET IOD A 404 1 HET PGE A 405 7 HETNAM IOD IODIDE ION HETNAM SAH S-ADENOSYL-L-HOMOCYSTEINE HETNAM PGE TRIETHYLENE GLYCOL FORMUL 3 IOD 9(I 1-) FORMUL 9 SAH 2(C14 H20 N6 O5 S) FORMUL 14 PGE C6 H14 O4 FORMUL 15 HOH *57(H2 O) HELIX 1 1 SER B 25 ASP B 36 1 12 HELIX 2 2 ASP B 36 SER B 50 1 15 HELIX 3 3 GLY B 66 ALA B 75 1 10 HELIX 4 4 SER B 87 ASN B 99 1 13 HELIX 5 5 THR B 111 GLY B 118 1 8 HELIX 6 6 GLY B 119 GLY B 132 1 14 HELIX 7 7 MET B 153 LEU B 171 1 19 HELIX 8 8 CYS B 193 TYR B 201 1 9 HELIX 9 9 TYR B 201 ARG B 206 1 6 HELIX 10 10 PHE B 213 GLU B 226 1 14 HELIX 11 11 PRO B 236 LEU B 240 5 5 HELIX 12 12 GLN B 256 SER B 262 5 7 HELIX 13 13 SER B 274 GLY B 285 1 12 HELIX 14 14 PRO B 327 GLU B 333 1 7 HELIX 15 15 LEU A 27 GLU A 35 1 9 HELIX 16 16 ASP A 36 SER A 50 1 15 HELIX 17 17 GLY A 66 ALA A 75 1 10 HELIX 18 18 SER A 87 ASN A 99 1 13 HELIX 19 19 THR A 111 GLY A 118 1 8 HELIX 20 20 GLY A 119 GLY A 132 1 14 HELIX 21 21 MET A 153 LEU A 171 1 19 HELIX 22 22 CYS A 193 TYR A 201 1 9 HELIX 23 23 TYR A 201 ARG A 206 1 6 HELIX 24 24 PHE A 213 GLU A 226 1 14 HELIX 25 25 PRO A 236 LEU A 240 5 5 HELIX 26 26 GLN A 256 SER A 262 5 7 HELIX 27 27 SER A 274 GLY A 285 1 12 HELIX 28 28 PRO A 327 GLU A 333 1 7 SHEET 1 A 5 ILE B 105 LEU B 108 0 SHEET 2 A 5 HIS B 79 ILE B 83 1 N VAL B 80 O THR B 106 SHEET 3 A 5 VAL B 57 VAL B 61 1 N ASP B 60 O PHE B 81 SHEET 4 A 5 VAL B 136 SER B 141 1 O LEU B 140 N VAL B 59 SHEET 5 A 5 GLU B 178 ILE B 180 1 O GLU B 178 N ALA B 137 SHEET 1 B 5 LEU B 231 GLU B 233 0 SHEET 2 B 5 GLN B 321 LEU B 325 -1 O THR B 323 N LEU B 231 SHEET 3 B 5 GLY B 294 TYR B 303 -1 N VAL B 297 O THR B 322 SHEET 4 B 5 ARG B 183 ILE B 191 -1 N ILE B 191 O GLY B 294 SHEET 5 B 5 LEU B 245 ASN B 251 -1 O LEU B 250 N ALA B 184 SHEET 1 C 4 LEU B 231 GLU B 233 0 SHEET 2 C 4 GLN B 321 LEU B 325 -1 O THR B 323 N LEU B 231 SHEET 3 C 4 GLY B 294 TYR B 303 -1 N VAL B 297 O THR B 322 SHEET 4 C 4 HIS B 306 SER B 309 -1 O LEU B 308 N VAL B 301 SHEET 1 D 3 LEU B 263 ASP B 270 0 SHEET 2 D 3 GLU B 344 ALA B 353 -1 O LEU B 345 N PHE B 269 SHEET 3 D 3 TYR B 361 GLU B 366 -1 O GLU B 364 N HIS B 350 SHEET 1 E 2 ARG B 289 SER B 291 0 SHEET 2 E 2 SER B 337 PRO B 339 -1 O PHE B 338 N VAL B 290 SHEET 1 F 5 ILE A 105 LEU A 108 0 SHEET 2 F 5 HIS A 79 ILE A 83 1 N SER A 82 O LEU A 108 SHEET 3 F 5 VAL A 57 VAL A 61 1 N VAL A 58 O PHE A 81 SHEET 4 F 5 VAL A 136 SER A 141 1 O LEU A 140 N VAL A 59 SHEET 5 F 5 GLU A 178 ILE A 180 1 O GLU A 178 N ALA A 137 SHEET 1 G 5 LEU A 231 GLU A 233 0 SHEET 2 G 5 GLN A 321 LEU A 325 -1 O THR A 323 N LEU A 231 SHEET 3 G 5 GLY A 294 TYR A 303 -1 N VAL A 297 O THR A 322 SHEET 4 G 5 ARG A 183 ILE A 191 -1 N THR A 185 O ASP A 300 SHEET 5 G 5 LEU A 245 ASN A 251 -1 O LEU A 247 N VAL A 186 SHEET 1 H 4 LEU A 231 GLU A 233 0 SHEET 2 H 4 GLN A 321 LEU A 325 -1 O THR A 323 N LEU A 231 SHEET 3 H 4 GLY A 294 TYR A 303 -1 N VAL A 297 O THR A 322 SHEET 4 H 4 HIS A 306 SER A 309 -1 O LEU A 308 N VAL A 301 SHEET 1 I 3 LEU A 263 ASP A 270 0 SHEET 2 I 3 GLU A 344 ALA A 353 -1 O LEU A 345 N PHE A 269 SHEET 3 I 3 TYR A 361 GLU A 366 -1 O GLU A 364 N HIS A 350 SHEET 1 J 2 ARG A 289 SER A 291 0 SHEET 2 J 2 SER A 337 PRO A 339 -1 O PHE A 338 N VAL A 290 CISPEP 1 ILE B 180 PRO B 181 0 3.52 CISPEP 2 ILE A 180 PRO A 181 0 2.54 SITE 1 AC1 2 THR B 185 SER B 302 SITE 1 AC2 1 ASN B 251 SITE 1 AC3 2 ARG B 126 HIS B 127 SITE 1 AC4 1 HIS B 318 SITE 1 AC5 17 HIS B 30 ARG B 39 GLY B 62 SER B 63 SITE 2 AC5 17 GLY B 64 ILE B 67 GLU B 84 ALA B 85 SITE 3 AC5 17 ASP B 110 THR B 111 VAL B 112 GLU B 113 SITE 4 AC5 17 GLU B 142 MET B 153 SER B 156 HOH B 503 SITE 5 AC5 17 HOH B 507 SITE 1 AC6 17 HIS A 30 MET A 33 ARG A 39 GLY A 62 SITE 2 AC6 17 SER A 63 GLY A 64 GLU A 84 ALA A 85 SITE 3 AC6 17 ASP A 110 THR A 111 VAL A 112 GLU A 113 SITE 4 AC6 17 GLU A 142 MET A 153 SER A 156 HOH A 502 SITE 5 AC6 17 HOH A 504 SITE 1 AC7 2 THR A 185 SER A 302 SITE 1 AC8 1 HIS B 268 SITE 1 AC9 1 HIS A 127 SITE 1 BC1 4 PRO A 195 GLN A 199 LEU A 238 GLU A 283 CRYST1 101.428 108.465 137.865 90.00 90.00 90.00 C 2 2 21 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009859 0.000000 0.000000 0.00000 SCALE2 0.000000 0.009220 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007253 0.00000