data_4LX5 # _entry.id 4LX5 # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.379 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 4LX5 pdb_00004lx5 10.2210/pdb4lx5/pdb NDB NA2639 ? ? RCSB RCSB081196 ? ? WWPDB D_1000081196 ? ? # loop_ _pdbx_database_related.db_name _pdbx_database_related.db_id _pdbx_database_related.details _pdbx_database_related.content_type PDB 3LA5 'orthogonal riboswitch bound to azacytosine' unspecified PDB 4LX6 . unspecified # _pdbx_database_status.entry_id 4LX5 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.recvd_initial_deposition_date 2013-07-29 _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_nmr_data ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Dunstan, M.S.' 1 'Leys, D.' 2 # _citation.id primary _citation.title 'Modular riboswitch toolsets for synthetic genetic control in diverse bacterial species.' _citation.journal_abbrev J.Am.Chem.Soc. _citation.journal_volume 136 _citation.page_first 10615 _citation.page_last 10624 _citation.year 2014 _citation.journal_id_ASTM JACSAT _citation.country US _citation.journal_id_ISSN 0002-7863 _citation.journal_id_CSD 0004 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 24971878 _citation.pdbx_database_id_DOI 10.1021/ja502873j # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Robinson, C.J.' 1 ? primary 'Vincent, H.A.' 2 ? primary 'Wu, M.C.' 3 ? primary 'Lowe, P.T.' 4 ? primary 'Dunstan, M.S.' 5 ? primary 'Leys, D.' 6 ? primary 'Micklefield, J.' 7 ? # _cell.entry_id 4LX5 _cell.length_a 49.050 _cell.length_b 149.710 _cell.length_c 24.400 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 4LX5 _symmetry.space_group_name_H-M 'P 21 21 2' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 18 _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer syn 'Mutated adenine riboswitch aptamer' 22685.416 1 ? 'U28G, G42C, U47C, U51C' ? ? 2 non-polymer syn 'pyrimido[4,5-d]pyrimidine-2,4-diamine' 162.152 1 ? ? ? ? 3 non-polymer syn 'MAGNESIUM ION' 24.305 4 ? ? ? ? 4 water nat water 18.015 17 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type polyribonucleotide _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code GGCUUCAUAUAAUCCGAAUGAUAUGGUUUCGGAGCUUCCACCAAGAGCCUUAAACUCUUGAUUAUGAAGUC _entity_poly.pdbx_seq_one_letter_code_can GGCUUCAUAUAAUCCGAAUGAUAUGGUUUCGGAGCUUCCACCAAGAGCCUUAAACUCUUGAUUAUGAAGUC _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 G n 1 2 G n 1 3 C n 1 4 U n 1 5 U n 1 6 C n 1 7 A n 1 8 U n 1 9 A n 1 10 U n 1 11 A n 1 12 A n 1 13 U n 1 14 C n 1 15 C n 1 16 G n 1 17 A n 1 18 A n 1 19 U n 1 20 G n 1 21 A n 1 22 U n 1 23 A n 1 24 U n 1 25 G n 1 26 G n 1 27 U n 1 28 U n 1 29 U n 1 30 C n 1 31 G n 1 32 G n 1 33 A n 1 34 G n 1 35 C n 1 36 U n 1 37 U n 1 38 C n 1 39 C n 1 40 A n 1 41 C n 1 42 C n 1 43 A n 1 44 A n 1 45 G n 1 46 A n 1 47 G n 1 48 C n 1 49 C n 1 50 U n 1 51 U n 1 52 A n 1 53 A n 1 54 A n 1 55 C n 1 56 U n 1 57 C n 1 58 U n 1 59 U n 1 60 G n 1 61 A n 1 62 U n 1 63 U n 1 64 A n 1 65 U n 1 66 G n 1 67 A n 1 68 A n 1 69 G n 1 70 U n 1 71 C n # _pdbx_entity_src_syn.entity_id 1 _pdbx_entity_src_syn.pdbx_src_id 1 _pdbx_entity_src_syn.pdbx_alt_source_flag sample _pdbx_entity_src_syn.pdbx_beg_seq_num ? _pdbx_entity_src_syn.pdbx_end_seq_num ? _pdbx_entity_src_syn.organism_scientific 'Vibrio vulnificus' _pdbx_entity_src_syn.organism_common_name ? _pdbx_entity_src_syn.ncbi_taxonomy_id 672 _pdbx_entity_src_syn.details 'in vitro transcription' # _struct_ref.id 1 _struct_ref.db_code AE016796 _struct_ref.db_name GB _struct_ref.entity_id 1 _struct_ref.pdbx_db_accession AE016796 _struct_ref.pdbx_align_begin 504380 _struct_ref.pdbx_seq_one_letter_code GCUUCAUAUAAUCCUAAUGAUAUGGUUUGGGAGUUUCUACCAAGAGCCUUAAACUCUUGAUUAUGAAGU _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 4LX5 _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 2 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 70 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession AE016796 _struct_ref_seq.db_align_beg 504380 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 504448 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 14 _struct_ref_seq.pdbx_auth_seq_align_end 82 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 4LX5 G A 1 ? GB AE016796 ? ? 'SEE REMARK 999' 13 1 1 4LX5 G A 16 ? GB AE016796 U 504394 'engineered mutation' 28 2 1 4LX5 C A 30 ? GB AE016796 G 504408 'engineered mutation' 42 3 1 4LX5 C A 35 ? GB AE016796 U 504413 'engineered mutation' 47 4 1 4LX5 C A 39 ? GB AE016796 U 504417 'engineered mutation' 51 5 1 4LX5 C A 71 ? GB AE016796 ? ? 'SEE REMARK 999' 83 6 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight 29G non-polymer . 'pyrimido[4,5-d]pyrimidine-2,4-diamine' ? 'C6 H6 N6' 162.152 A 'RNA linking' y "ADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 C 'RNA linking' y "CYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O8 P' 323.197 G 'RNA linking' y "GUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O8 P' 363.221 HOH non-polymer . WATER ? 'H2 O' 18.015 MG non-polymer . 'MAGNESIUM ION' ? 'Mg 2' 24.305 U 'RNA linking' y "URIDINE-5'-MONOPHOSPHATE" ? 'C9 H13 N2 O9 P' 324.181 # _exptl.entry_id 4LX5 _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 1.97 _exptl_crystal.density_percent_sol 37.70 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, SITTING DROP' _exptl_crystal_grow.temp 277 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 9.0 _exptl_crystal_grow.pdbx_pH_range ? _exptl_crystal_grow.pdbx_details '3M 1,6 hexanediol, 0.1M Tris (pH 9.0) , VAPOR DIFFUSION, SITTING DROP, temperature 277K' # _diffrn.id 1 _diffrn.ambient_temp 200 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector PIXEL _diffrn_detector.type 'DECTRIS PILATUS 6M' _diffrn_detector.pdbx_collection_date 2012-07-14 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator GRAPHITE _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 1.0 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'DIAMOND BEAMLINE I04' _diffrn_source.pdbx_synchrotron_site Diamond _diffrn_source.pdbx_synchrotron_beamline I04 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list 1.0 # _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 _reflns.entry_id 4LX5 _reflns.observed_criterion_sigma_I 2.13 _reflns.observed_criterion_sigma_F 2.13 _reflns.d_resolution_low 46.6 _reflns.d_resolution_high 2.13 _reflns.number_obs 10766 _reflns.number_all 10788 _reflns.percent_possible_obs 99.8 _reflns.pdbx_Rmerge_I_obs ? _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI ? _reflns.B_iso_Wilson_estimate 59.890 _reflns.pdbx_redundancy ? _reflns.R_free_details ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? # _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.entry_id 4LX5 _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.ls_number_reflns_obs 10722 _refine.ls_number_reflns_all 10788 _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 1.34 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 46.6 _refine.ls_d_res_high 2.130 _refine.ls_percent_reflns_obs 99.72 _refine.ls_R_factor_obs 0.2017 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.1990 _refine.ls_R_factor_R_free 0.2567 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 4.78 _refine.ls_number_reflns_R_free 513 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min 1.000 _refine.occupancy_max 1.000 _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.B_iso_mean 63.9851 _refine.aniso_B[1][1] ? _refine.aniso_B[2][2] ? _refine.aniso_B[3][3] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][3] ? _refine.solvent_model_details 'FLAT BULK SOLVENT MODEL' _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_solvent_vdw_probe_radii 1.11 _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii 0.90 _refine.pdbx_ls_cross_valid_method ? _refine.details ? _refine.pdbx_starting_model 'PDB ENTRY 3LA5' _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values ML _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML 0.31 _refine.pdbx_overall_phase_error 32.97 _refine.overall_SU_B ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? _refine.ls_redundancy_reflns_obs ? _refine.overall_SU_R_free ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? # _refine_analyze.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_analyze.entry_id 4LX5 _refine_analyze.Luzzati_coordinate_error_obs 0.31 _refine_analyze.Luzzati_sigma_a_obs ? _refine_analyze.Luzzati_d_res_low_obs ? _refine_analyze.Luzzati_coordinate_error_free ? _refine_analyze.Luzzati_sigma_a_free ? _refine_analyze.Luzzati_d_res_low_free ? _refine_analyze.number_disordered_residues ? _refine_analyze.occupancy_sum_hydrogen ? _refine_analyze.occupancy_sum_non_hydrogen ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 0 _refine_hist.pdbx_number_atoms_nucleic_acid 1502 _refine_hist.pdbx_number_atoms_ligand 16 _refine_hist.number_atoms_solvent 17 _refine_hist.number_atoms_total 1535 _refine_hist.d_res_high 2.130 _refine_hist.d_res_low 46.6 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function f_bond_d 0.005 ? ? 1690 'X-RAY DIFFRACTION' ? f_angle_d 0.986 ? ? 2626 'X-RAY DIFFRACTION' ? f_dihedral_angle_d 14.301 ? ? 849 'X-RAY DIFFRACTION' ? f_chiral_restr 0.042 ? ? 355 'X-RAY DIFFRACTION' ? f_plane_restr 0.006 ? ? 72 'X-RAY DIFFRACTION' ? # loop_ _refine_ls_shell.pdbx_refine_id _refine_ls_shell.pdbx_total_number_of_bins_used _refine_ls_shell.d_res_high _refine_ls_shell.d_res_low _refine_ls_shell.number_reflns_R_work _refine_ls_shell.R_factor_R_work _refine_ls_shell.percent_reflns_obs _refine_ls_shell.R_factor_R_free _refine_ls_shell.R_factor_R_free_error _refine_ls_shell.percent_reflns_R_free _refine_ls_shell.number_reflns_R_free _refine_ls_shell.number_reflns_all _refine_ls_shell.R_factor_all _refine_ls_shell.redundancy_reflns_obs _refine_ls_shell.number_reflns_obs 'X-RAY DIFFRACTION' . 2.1300 2.3444 2487 0.3063 100.00 0.4041 . . 129 . . . . 'X-RAY DIFFRACTION' . 2.3444 2.6836 2501 0.2982 100.00 0.3863 . . 128 . . . . 'X-RAY DIFFRACTION' . 2.6836 3.3809 2529 0.2297 100.00 0.2919 . . 129 . . . . 'X-RAY DIFFRACTION' . 3.3809 46.6231 2692 0.1651 99.00 0.2120 . . 127 . . . . # _struct.entry_id 4LX5 _struct.title ;X-ray crystal structure of the M6" riboswitch aptamer bound to pyrimido[4,5-d]pyrimidine-2,4-diamine (PPDA) ; _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 4LX5 _struct_keywords.pdbx_keywords RNA _struct_keywords.text 'Riboswitch, Gene expression platform, RNA' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? D N N 3 ? E N N 3 ? F N N 3 ? G N N 4 ? # _struct_biol.id 1 _struct_biol.details ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role metalc1 metalc ? ? A A 12 OP1 ? ? ? 1_555 D MG . MG ? ? A A 24 A MG 503 1_555 ? ? ? ? ? ? ? 2.191 ? ? metalc2 metalc ? ? A U 56 OP1 ? ? ? 1_555 E MG . MG ? ? A U 68 A MG 504 1_555 ? ? ? ? ? ? ? 2.190 ? ? metalc3 metalc ? ? C MG . MG ? ? ? 1_555 G HOH . O ? ? A MG 502 A HOH 608 1_555 ? ? ? ? ? ? ? 2.283 ? ? metalc4 metalc ? ? C MG . MG ? ? ? 1_555 G HOH . O ? ? A MG 502 A HOH 609 1_555 ? ? ? ? ? ? ? 2.464 ? ? metalc5 metalc ? ? C MG . MG ? ? ? 1_555 G HOH . O ? ? A MG 502 A HOH 615 1_555 ? ? ? ? ? ? ? 2.517 ? ? metalc6 metalc ? ? C MG . MG ? ? ? 1_555 G HOH . O ? ? A MG 502 A HOH 616 1_555 ? ? ? ? ? ? ? 2.111 ? ? metalc7 metalc ? ? D MG . MG ? ? ? 1_555 G HOH . O ? ? A MG 503 A HOH 604 1_555 ? ? ? ? ? ? ? 2.378 ? ? metalc8 metalc ? ? D MG . MG ? ? ? 1_555 G HOH . O ? ? A MG 503 A HOH 610 1_555 ? ? ? ? ? ? ? 2.270 ? ? metalc9 metalc ? ? D MG . MG ? ? ? 1_555 G HOH . O ? ? A MG 503 A HOH 611 1_555 ? ? ? ? ? ? ? 2.488 ? ? metalc10 metalc ? ? D MG . MG ? ? ? 1_555 G HOH . O ? ? A MG 503 A HOH 612 1_555 ? ? ? ? ? ? ? 1.991 ? ? metalc11 metalc ? ? D MG . MG ? ? ? 1_555 G HOH . O ? ? A MG 503 A HOH 613 1_555 ? ? ? ? ? ? ? 2.318 ? ? hydrog1 hydrog ? ? A G 1 N1 ? ? ? 1_555 A C 71 N3 ? ? A G 13 A C 83 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog2 hydrog ? ? A G 1 N2 ? ? ? 1_555 A C 71 O2 ? ? A G 13 A C 83 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog3 hydrog ? ? A G 1 O6 ? ? ? 1_555 A C 71 N4 ? ? A G 13 A C 83 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog4 hydrog ? ? A G 2 N1 ? ? ? 1_555 A U 70 O2 ? ? A G 14 A U 82 1_555 ? ? ? ? ? ? 'G-U MISPAIR' ? ? ? hydrog5 hydrog ? ? A C 3 N3 ? ? ? 1_555 A G 69 N1 ? ? A C 15 A G 81 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog6 hydrog ? ? A C 3 N4 ? ? ? 1_555 A G 69 O6 ? ? A C 15 A G 81 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog7 hydrog ? ? A C 3 O2 ? ? ? 1_555 A G 69 N2 ? ? A C 15 A G 81 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog8 hydrog ? ? A U 4 N3 ? ? ? 1_555 A A 68 N1 ? ? A U 16 A A 80 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog9 hydrog ? ? A U 4 O4 ? ? ? 1_555 A A 68 N6 ? ? A U 16 A A 80 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog10 hydrog ? ? A U 5 N3 ? ? ? 1_555 A A 67 N1 ? ? A U 17 A A 79 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog11 hydrog ? ? A U 5 O4 ? ? ? 1_555 A A 67 N6 ? ? A U 17 A A 79 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog12 hydrog ? ? A C 6 N3 ? ? ? 1_555 A G 66 N1 ? ? A C 18 A G 78 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog13 hydrog ? ? A C 6 N4 ? ? ? 1_555 A G 66 O6 ? ? A C 18 A G 78 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog14 hydrog ? ? A C 6 O2 ? ? ? 1_555 A G 66 N2 ? ? A C 18 A G 78 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog15 hydrog ? ? A A 7 N1 ? ? ? 1_555 A U 65 N3 ? ? A A 19 A U 77 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog16 hydrog ? ? A A 7 N6 ? ? ? 1_555 A U 65 O4 ? ? A A 19 A U 77 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog17 hydrog ? ? A U 8 N3 ? ? ? 1_555 A A 64 N1 ? ? A U 20 A A 76 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog18 hydrog ? ? A U 8 O4 ? ? ? 1_555 A A 64 N6 ? ? A U 20 A A 76 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog19 hydrog ? ? A A 9 N1 ? ? ? 1_555 A U 63 N3 ? ? A A 21 A U 75 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog20 hydrog ? ? A A 9 N6 ? ? ? 1_555 A U 63 O4 ? ? A A 21 A U 75 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog21 hydrog ? ? A U 10 N3 ? ? ? 1_555 A A 40 N1 ? ? A U 22 A A 52 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog22 hydrog ? ? A U 10 O4 ? ? ? 1_555 A A 40 N6 ? ? A U 22 A A 52 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog23 hydrog ? ? A A 11 N1 ? ? ? 1_555 A G 34 N2 ? ? A A 23 A G 46 1_555 ? ? ? ? ? ? TYPE_10_PAIR ? ? ? hydrog24 hydrog ? ? A A 11 N6 ? ? ? 1_555 A G 34 N3 ? ? A A 23 A G 46 1_555 ? ? ? ? ? ? TYPE_10_PAIR ? ? ? hydrog25 hydrog ? ? A U 13 N3 ? ? ? 1_555 A A 33 N1 ? ? A U 25 A A 45 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog26 hydrog ? ? A U 13 O4 ? ? ? 1_555 A A 33 N6 ? ? A U 25 A A 45 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog27 hydrog ? ? A C 14 N3 ? ? ? 1_555 A G 32 N1 ? ? A C 26 A G 44 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog28 hydrog ? ? A C 14 N4 ? ? ? 1_555 A G 32 O6 ? ? A C 26 A G 44 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog29 hydrog ? ? A C 14 O2 ? ? ? 1_555 A G 32 N2 ? ? A C 26 A G 44 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog30 hydrog ? ? A C 15 N3 ? ? ? 1_555 A G 31 N1 ? ? A C 27 A G 43 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog31 hydrog ? ? A C 15 N4 ? ? ? 1_555 A G 31 O6 ? ? A C 27 A G 43 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog32 hydrog ? ? A C 15 O2 ? ? ? 1_555 A G 31 N2 ? ? A C 27 A G 43 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog33 hydrog ? ? A G 16 N1 ? ? ? 1_555 A C 30 N3 ? ? A G 28 A C 42 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog34 hydrog ? ? A G 16 N2 ? ? ? 1_555 A C 30 O2 ? ? A G 28 A C 42 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog35 hydrog ? ? A G 16 O6 ? ? ? 1_555 A C 30 N4 ? ? A G 28 A C 42 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog36 hydrog ? ? A A 17 N1 ? ? ? 1_555 A U 29 N3 ? ? A A 29 A U 41 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog37 hydrog ? ? A A 17 N6 ? ? ? 1_555 A U 29 O4 ? ? A A 29 A U 41 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog38 hydrog ? ? A A 18 N1 ? ? ? 1_555 A U 28 N3 ? ? A A 30 A U 40 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog39 hydrog ? ? A A 18 N6 ? ? ? 1_555 A U 28 O4 ? ? A A 30 A U 40 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog40 hydrog ? ? A U 19 N3 ? ? ? 1_555 A U 27 O4 ? ? A U 31 A U 39 1_555 ? ? ? ? ? ? TYPE_16_PAIR ? ? ? hydrog41 hydrog ? ? A U 19 O2 ? ? ? 1_555 A U 27 N3 ? ? A U 31 A U 39 1_555 ? ? ? ? ? ? TYPE_16_PAIR ? ? ? hydrog42 hydrog ? ? A A 21 N1 ? ? ? 1_555 A A 54 N6 ? ? A A 33 A A 66 1_555 ? ? ? ? ? ? TYPE_5_PAIR ? ? ? hydrog43 hydrog ? ? A A 21 N6 ? ? ? 1_555 A A 54 N7 ? ? A A 33 A A 66 1_555 ? ? ? ? ? ? TYPE_5_PAIR ? ? ? hydrog44 hydrog ? ? A U 22 O2 ? ? ? 1_555 A G 25 N2 ? ? A U 34 A G 37 1_555 ? ? ? ? ? ? 'U-G MISPAIR' ? ? ? hydrog45 hydrog ? ? A U 22 N3 ? ? ? 1_555 A A 53 N7 ? ? A U 34 A A 65 1_555 ? ? ? ? ? ? 'REVERSED HOOGSTEEN' ? ? ? hydrog46 hydrog ? ? A U 22 O2 ? ? ? 1_555 A A 53 N6 ? ? A U 34 A A 65 1_555 ? ? ? ? ? ? 'REVERSED HOOGSTEEN' ? ? ? hydrog47 hydrog ? ? A A 23 N6 ? ? ? 1_555 A A 52 N1 ? ? A A 35 A A 64 1_555 ? ? ? ? ? ? TYPE_5_PAIR ? ? ? hydrog48 hydrog ? ? A A 23 N7 ? ? ? 1_555 A A 52 N6 ? ? A A 35 A A 64 1_555 ? ? ? ? ? ? TYPE_5_PAIR ? ? ? hydrog49 hydrog ? ? A G 25 N1 ? ? ? 1_555 A C 49 N3 ? ? A G 37 A C 61 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog50 hydrog ? ? A G 25 N2 ? ? ? 1_555 A C 49 O2 ? ? A G 37 A C 61 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog51 hydrog ? ? A G 25 O6 ? ? ? 1_555 A C 49 N4 ? ? A G 37 A C 61 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog52 hydrog ? ? A G 26 N1 ? ? ? 1_555 A C 48 N3 ? ? A G 38 A C 60 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog53 hydrog ? ? A G 26 N2 ? ? ? 1_555 A C 48 O2 ? ? A G 38 A C 60 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog54 hydrog ? ? A G 26 O6 ? ? ? 1_555 A C 48 N4 ? ? A G 38 A C 60 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog55 hydrog ? ? A G 26 N2 ? ? ? 1_555 A A 54 N1 ? ? A G 38 A A 66 1_555 ? ? ? ? ? ? TYPE_10_PAIR ? ? ? hydrog56 hydrog ? ? A G 26 N3 ? ? ? 1_555 A A 54 N6 ? ? A G 38 A A 66 1_555 ? ? ? ? ? ? TYPE_10_PAIR ? ? ? hydrog57 hydrog ? ? A G 34 N1 ? ? ? 1_555 A C 41 N3 ? ? A G 46 A C 53 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog58 hydrog ? ? A G 34 N2 ? ? ? 1_555 A C 41 O2 ? ? A G 46 A C 53 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog59 hydrog ? ? A G 34 O6 ? ? ? 1_555 A C 41 N4 ? ? A G 46 A C 53 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog60 hydrog ? ? A C 35 O2 ? ? ? 1_555 A C 39 N4 ? ? A C 47 A C 51 1_555 ? ? ? ? ? ? 'C-C MISPAIR' ? ? ? hydrog61 hydrog ? ? A U 37 N3 ? ? ? 1_555 A A 64 N3 ? ? A U 49 A A 76 1_555 ? ? ? ? ? ? 'U-A PAIR' ? ? ? hydrog62 hydrog ? ? A C 38 N4 ? ? ? 1_555 A U 63 O2 ? ? A C 50 A U 75 1_555 ? ? ? ? ? ? 'C-U MISPAIR' ? ? ? hydrog63 hydrog ? ? A C 42 N3 ? ? ? 1_555 A G 60 N1 ? ? A C 54 A G 72 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog64 hydrog ? ? A C 42 N4 ? ? ? 1_555 A G 60 O6 ? ? A C 54 A G 72 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog65 hydrog ? ? A C 42 O2 ? ? ? 1_555 A G 60 N2 ? ? A C 54 A G 72 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog66 hydrog ? ? A A 43 N1 ? ? ? 1_555 A U 59 N3 ? ? A A 55 A U 71 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog67 hydrog ? ? A A 43 N6 ? ? ? 1_555 A U 59 O4 ? ? A A 55 A U 71 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog68 hydrog ? ? A A 44 N1 ? ? ? 1_555 A U 58 N3 ? ? A A 56 A U 70 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog69 hydrog ? ? A A 44 N6 ? ? ? 1_555 A U 58 O4 ? ? A A 56 A U 70 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog70 hydrog ? ? A G 45 N1 ? ? ? 1_555 A C 57 N3 ? ? A G 57 A C 69 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog71 hydrog ? ? A G 45 N2 ? ? ? 1_555 A C 57 O2 ? ? A G 57 A C 69 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog72 hydrog ? ? A G 45 O6 ? ? ? 1_555 A C 57 N4 ? ? A G 57 A C 69 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog73 hydrog ? ? A A 46 N1 ? ? ? 1_555 A U 56 N3 ? ? A A 58 A U 68 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog74 hydrog ? ? A A 46 N6 ? ? ? 1_555 A U 56 O4 ? ? A A 58 A U 68 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog75 hydrog ? ? A G 47 N1 ? ? ? 1_555 A C 55 N3 ? ? A G 59 A C 67 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog76 hydrog ? ? A G 47 N2 ? ? ? 1_555 A C 55 O2 ? ? A G 59 A C 67 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog77 hydrog ? ? A G 47 O6 ? ? ? 1_555 A C 55 N4 ? ? A G 59 A C 67 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog78 hydrog ? ? A C 49 O2 ? ? ? 1_555 A A 53 N6 ? ? A C 61 A A 65 1_555 ? ? ? ? ? ? 'C-A MISPAIR' ? ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference metalc ? ? hydrog ? ? # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software A 29G 501 ? 8 'BINDING SITE FOR RESIDUE 29G A 501' AC2 Software A MG 502 ? 6 'BINDING SITE FOR RESIDUE MG A 502' AC3 Software A MG 503 ? 6 'BINDING SITE FOR RESIDUE MG A 503' AC4 Software A MG 504 ? 3 'BINDING SITE FOR RESIDUE MG A 504' AC5 Software A MG 505 ? 1 'BINDING SITE FOR RESIDUE MG A 505' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 8 A A 9 ? A A 21 . ? 1_555 ? 2 AC1 8 U A 10 ? U A 22 . ? 1_555 ? 3 AC1 8 C A 35 ? C A 47 . ? 1_555 ? 4 AC1 8 C A 39 ? C A 51 . ? 1_555 ? 5 AC1 8 A A 40 ? A A 52 . ? 1_555 ? 6 AC1 8 A A 61 ? A A 73 . ? 1_555 ? 7 AC1 8 U A 62 ? U A 74 . ? 1_555 ? 8 AC1 8 U A 63 ? U A 75 . ? 1_555 ? 9 AC2 6 G A 31 ? G A 43 . ? 1_555 ? 10 AC2 6 G A 32 ? G A 44 . ? 1_555 ? 11 AC2 6 HOH G . ? HOH A 608 . ? 1_555 ? 12 AC2 6 HOH G . ? HOH A 609 . ? 1_555 ? 13 AC2 6 HOH G . ? HOH A 615 . ? 1_555 ? 14 AC2 6 HOH G . ? HOH A 616 . ? 1_555 ? 15 AC3 6 A A 12 ? A A 24 . ? 1_555 ? 16 AC3 6 HOH G . ? HOH A 604 . ? 1_555 ? 17 AC3 6 HOH G . ? HOH A 610 . ? 1_555 ? 18 AC3 6 HOH G . ? HOH A 611 . ? 1_555 ? 19 AC3 6 HOH G . ? HOH A 612 . ? 1_555 ? 20 AC3 6 HOH G . ? HOH A 613 . ? 1_555 ? 21 AC4 3 C A 15 ? C A 27 . ? 1_555 ? 22 AC4 3 G A 25 ? G A 37 . ? 1_556 ? 23 AC4 3 U A 56 ? U A 68 . ? 1_555 ? 24 AC5 1 U A 28 ? U A 40 . ? 1_555 ? # _atom_sites.entry_id 4LX5 _atom_sites.fract_transf_matrix[1][1] 0.020387 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.006680 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.040984 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C MG N O P # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 G 1 13 13 G G A . n A 1 2 G 2 14 14 G G A . n A 1 3 C 3 15 15 C C A . n A 1 4 U 4 16 16 U U A . n A 1 5 U 5 17 17 U U A . n A 1 6 C 6 18 18 C C A . n A 1 7 A 7 19 19 A A A . n A 1 8 U 8 20 20 U U A . n A 1 9 A 9 21 21 A A A . n A 1 10 U 10 22 22 U U A . n A 1 11 A 11 23 23 A A A . n A 1 12 A 12 24 24 A A A . n A 1 13 U 13 25 25 U U A . n A 1 14 C 14 26 26 C C A . n A 1 15 C 15 27 27 C C A . n A 1 16 G 16 28 28 G G A . n A 1 17 A 17 29 29 A A A . n A 1 18 A 18 30 30 A A A . n A 1 19 U 19 31 31 U U A . n A 1 20 G 20 32 32 G G A . n A 1 21 A 21 33 33 A A A . n A 1 22 U 22 34 34 U U A . n A 1 23 A 23 35 35 A A A . n A 1 24 U 24 36 36 U U A . n A 1 25 G 25 37 37 G G A . n A 1 26 G 26 38 38 G G A . n A 1 27 U 27 39 39 U U A . n A 1 28 U 28 40 40 U U A . n A 1 29 U 29 41 41 U U A . n A 1 30 C 30 42 42 C C A . n A 1 31 G 31 43 43 G G A . n A 1 32 G 32 44 44 G G A . n A 1 33 A 33 45 45 A A A . n A 1 34 G 34 46 46 G G A . n A 1 35 C 35 47 47 C C A . n A 1 36 U 36 48 48 U U A . n A 1 37 U 37 49 49 U U A . n A 1 38 C 38 50 50 C C A . n A 1 39 C 39 51 51 C C A . n A 1 40 A 40 52 52 A A A . n A 1 41 C 41 53 53 C C A . n A 1 42 C 42 54 54 C C A . n A 1 43 A 43 55 55 A A A . n A 1 44 A 44 56 56 A A A . n A 1 45 G 45 57 57 G G A . n A 1 46 A 46 58 58 A A A . n A 1 47 G 47 59 59 G G A . n A 1 48 C 48 60 60 C C A . n A 1 49 C 49 61 61 C C A . n A 1 50 U 50 62 62 U U A . n A 1 51 U 51 63 63 U U A . n A 1 52 A 52 64 64 A A A . n A 1 53 A 53 65 65 A A A . n A 1 54 A 54 66 66 A A A . n A 1 55 C 55 67 67 C C A . n A 1 56 U 56 68 68 U U A . n A 1 57 C 57 69 69 C C A . n A 1 58 U 58 70 70 U U A . n A 1 59 U 59 71 71 U U A . n A 1 60 G 60 72 72 G G A . n A 1 61 A 61 73 73 A A A . n A 1 62 U 62 74 74 U U A . n A 1 63 U 63 75 75 U U A . n A 1 64 A 64 76 76 A A A . n A 1 65 U 65 77 77 U U A . n A 1 66 G 66 78 78 G G A . n A 1 67 A 67 79 79 A A A . n A 1 68 A 68 80 80 A A A . n A 1 69 G 69 81 81 G G A . n A 1 70 U 70 82 82 U U A . n A 1 71 C 71 83 83 C C A . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 29G 1 501 501 29G PDA A . C 3 MG 1 502 1 MG MG A . D 3 MG 1 503 2 MG MG A . E 3 MG 1 504 3 MG MG A . F 3 MG 1 505 4 MG MG A . G 4 HOH 1 601 1 HOH HOH A . G 4 HOH 2 602 2 HOH HOH A . G 4 HOH 3 603 3 HOH HOH A . G 4 HOH 4 604 4 HOH HOH A . G 4 HOH 5 605 5 HOH HOH A . G 4 HOH 6 606 6 HOH HOH A . G 4 HOH 7 607 7 HOH HOH A . G 4 HOH 8 608 8 HOH HOH A . G 4 HOH 9 609 9 HOH HOH A . G 4 HOH 10 610 10 HOH HOH A . G 4 HOH 11 611 14 HOH HOH A . G 4 HOH 12 612 15 HOH HOH A . G 4 HOH 13 613 16 HOH HOH A . G 4 HOH 14 614 17 HOH HOH A . G 4 HOH 15 615 18 HOH HOH A . G 4 HOH 16 616 19 HOH HOH A . G 4 HOH 17 617 20 HOH HOH A . # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_struct_conn_angle.id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_alt_id _pdbx_struct_conn_angle.ptnr1_label_asym_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr1_auth_atom_id _pdbx_struct_conn_angle.ptnr1_auth_asym_id _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_PDB_ins_code _pdbx_struct_conn_angle.ptnr1_symmetry _pdbx_struct_conn_angle.ptnr2_label_atom_id _pdbx_struct_conn_angle.ptnr2_label_alt_id _pdbx_struct_conn_angle.ptnr2_label_asym_id _pdbx_struct_conn_angle.ptnr2_label_comp_id _pdbx_struct_conn_angle.ptnr2_label_seq_id _pdbx_struct_conn_angle.ptnr2_auth_atom_id _pdbx_struct_conn_angle.ptnr2_auth_asym_id _pdbx_struct_conn_angle.ptnr2_auth_comp_id _pdbx_struct_conn_angle.ptnr2_auth_seq_id _pdbx_struct_conn_angle.ptnr2_PDB_ins_code _pdbx_struct_conn_angle.ptnr2_symmetry _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_alt_id _pdbx_struct_conn_angle.ptnr3_label_asym_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.ptnr3_auth_atom_id _pdbx_struct_conn_angle.ptnr3_auth_asym_id _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_PDB_ins_code _pdbx_struct_conn_angle.ptnr3_symmetry _pdbx_struct_conn_angle.value _pdbx_struct_conn_angle.value_esd 1 OP1 ? A A 12 ? A A 24 ? 1_555 MG ? D MG . ? A MG 503 ? 1_555 O ? G HOH . ? A HOH 604 ? 1_555 78.9 ? 2 OP1 ? A A 12 ? A A 24 ? 1_555 MG ? D MG . ? A MG 503 ? 1_555 O ? G HOH . ? A HOH 610 ? 1_555 161.0 ? 3 O ? G HOH . ? A HOH 604 ? 1_555 MG ? D MG . ? A MG 503 ? 1_555 O ? G HOH . ? A HOH 610 ? 1_555 82.3 ? 4 OP1 ? A A 12 ? A A 24 ? 1_555 MG ? D MG . ? A MG 503 ? 1_555 O ? G HOH . ? A HOH 611 ? 1_555 99.3 ? 5 O ? G HOH . ? A HOH 604 ? 1_555 MG ? D MG . ? A MG 503 ? 1_555 O ? G HOH . ? A HOH 611 ? 1_555 95.1 ? 6 O ? G HOH . ? A HOH 610 ? 1_555 MG ? D MG . ? A MG 503 ? 1_555 O ? G HOH . ? A HOH 611 ? 1_555 84.9 ? 7 OP1 ? A A 12 ? A A 24 ? 1_555 MG ? D MG . ? A MG 503 ? 1_555 O ? G HOH . ? A HOH 612 ? 1_555 79.9 ? 8 O ? G HOH . ? A HOH 604 ? 1_555 MG ? D MG . ? A MG 503 ? 1_555 O ? G HOH . ? A HOH 612 ? 1_555 87.6 ? 9 O ? G HOH . ? A HOH 610 ? 1_555 MG ? D MG . ? A MG 503 ? 1_555 O ? G HOH . ? A HOH 612 ? 1_555 96.8 ? 10 O ? G HOH . ? A HOH 611 ? 1_555 MG ? D MG . ? A MG 503 ? 1_555 O ? G HOH . ? A HOH 612 ? 1_555 177.0 ? 11 OP1 ? A A 12 ? A A 24 ? 1_555 MG ? D MG . ? A MG 503 ? 1_555 O ? G HOH . ? A HOH 613 ? 1_555 137.4 ? 12 O ? G HOH . ? A HOH 604 ? 1_555 MG ? D MG . ? A MG 503 ? 1_555 O ? G HOH . ? A HOH 613 ? 1_555 143.4 ? 13 O ? G HOH . ? A HOH 610 ? 1_555 MG ? D MG . ? A MG 503 ? 1_555 O ? G HOH . ? A HOH 613 ? 1_555 61.5 ? 14 O ? G HOH . ? A HOH 611 ? 1_555 MG ? D MG . ? A MG 503 ? 1_555 O ? G HOH . ? A HOH 613 ? 1_555 77.6 ? 15 O ? G HOH . ? A HOH 612 ? 1_555 MG ? D MG . ? A MG 503 ? 1_555 O ? G HOH . ? A HOH 613 ? 1_555 101.0 ? 16 O ? G HOH . ? A HOH 608 ? 1_555 MG ? C MG . ? A MG 502 ? 1_555 O ? G HOH . ? A HOH 609 ? 1_555 67.0 ? 17 O ? G HOH . ? A HOH 608 ? 1_555 MG ? C MG . ? A MG 502 ? 1_555 O ? G HOH . ? A HOH 615 ? 1_555 113.4 ? 18 O ? G HOH . ? A HOH 609 ? 1_555 MG ? C MG . ? A MG 502 ? 1_555 O ? G HOH . ? A HOH 615 ? 1_555 76.8 ? 19 O ? G HOH . ? A HOH 608 ? 1_555 MG ? C MG . ? A MG 502 ? 1_555 O ? G HOH . ? A HOH 616 ? 1_555 68.9 ? 20 O ? G HOH . ? A HOH 609 ? 1_555 MG ? C MG . ? A MG 502 ? 1_555 O ? G HOH . ? A HOH 616 ? 1_555 113.5 ? 21 O ? G HOH . ? A HOH 615 ? 1_555 MG ? C MG . ? A MG 502 ? 1_555 O ? G HOH . ? A HOH 616 ? 1_555 78.1 ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2014-07-16 2 'Structure model' 1 1 2014-08-20 3 'Structure model' 1 2 2018-01-24 4 'Structure model' 1 3 2023-09-20 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Database references' 2 3 'Structure model' 'Structure summary' 3 4 'Structure model' 'Data collection' 4 4 'Structure model' 'Database references' 5 4 'Structure model' 'Derived calculations' 6 4 'Structure model' 'Refinement description' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 3 'Structure model' audit_author 2 4 'Structure model' chem_comp_atom 3 4 'Structure model' chem_comp_bond 4 4 'Structure model' database_2 5 4 'Structure model' pdbx_initial_refinement_model 6 4 'Structure model' pdbx_struct_conn_angle 7 4 'Structure model' struct_conn 8 4 'Structure model' struct_ref_seq_dif 9 4 'Structure model' struct_site # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 3 'Structure model' '_audit_author.name' 2 4 'Structure model' '_database_2.pdbx_DOI' 3 4 'Structure model' '_database_2.pdbx_database_accession' 4 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_comp_id' 5 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_seq_id' 6 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_asym_id' 7 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_atom_id' 8 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_comp_id' 9 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_seq_id' 10 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_comp_id' 11 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_seq_id' 12 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_asym_id' 13 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_atom_id' 14 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_comp_id' 15 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_seq_id' 16 4 'Structure model' '_pdbx_struct_conn_angle.value' 17 4 'Structure model' '_struct_conn.pdbx_dist_value' 18 4 'Structure model' '_struct_conn.ptnr1_auth_comp_id' 19 4 'Structure model' '_struct_conn.ptnr1_auth_seq_id' 20 4 'Structure model' '_struct_conn.ptnr1_label_asym_id' 21 4 'Structure model' '_struct_conn.ptnr1_label_atom_id' 22 4 'Structure model' '_struct_conn.ptnr1_label_comp_id' 23 4 'Structure model' '_struct_conn.ptnr1_label_seq_id' 24 4 'Structure model' '_struct_conn.ptnr2_auth_comp_id' 25 4 'Structure model' '_struct_conn.ptnr2_auth_seq_id' 26 4 'Structure model' '_struct_conn.ptnr2_label_asym_id' 27 4 'Structure model' '_struct_conn.ptnr2_label_atom_id' 28 4 'Structure model' '_struct_conn.ptnr2_label_comp_id' 29 4 'Structure model' '_struct_ref_seq_dif.details' 30 4 'Structure model' '_struct_site.pdbx_auth_asym_id' 31 4 'Structure model' '_struct_site.pdbx_auth_comp_id' 32 4 'Structure model' '_struct_site.pdbx_auth_seq_id' # loop_ _pdbx_refine_tls.pdbx_refine_id _pdbx_refine_tls.id _pdbx_refine_tls.details _pdbx_refine_tls.method _pdbx_refine_tls.origin_x _pdbx_refine_tls.origin_y _pdbx_refine_tls.origin_z _pdbx_refine_tls.T[1][1] _pdbx_refine_tls.T[2][2] _pdbx_refine_tls.T[3][3] _pdbx_refine_tls.T[1][2] _pdbx_refine_tls.T[1][3] _pdbx_refine_tls.T[2][3] _pdbx_refine_tls.L[1][1] _pdbx_refine_tls.L[2][2] _pdbx_refine_tls.L[3][3] _pdbx_refine_tls.L[1][2] _pdbx_refine_tls.L[1][3] _pdbx_refine_tls.L[2][3] _pdbx_refine_tls.S[1][1] _pdbx_refine_tls.S[1][2] _pdbx_refine_tls.S[1][3] _pdbx_refine_tls.S[2][1] _pdbx_refine_tls.S[2][2] _pdbx_refine_tls.S[2][3] _pdbx_refine_tls.S[3][1] _pdbx_refine_tls.S[3][2] _pdbx_refine_tls.S[3][3] 'X-RAY DIFFRACTION' 1 ? refined 10.5996 6.2996 4.2192 0.2248 0.4613 1.4866 0.1909 0.0002 -0.1025 0.4992 2.1474 0.4347 -1.0142 0.4551 -1.0349 0.9323 0.3378 -1.8082 0.2536 -0.8803 -1.3741 -0.2482 -0.3313 -0.1185 'X-RAY DIFFRACTION' 2 ? refined -10.1432 30.0316 -4.9918 0.3659 0.4249 0.4539 0.0426 0.0028 -0.0050 1.8647 5.2275 1.5943 -1.4358 1.4030 -0.8467 0.3337 0.2030 0.0509 -0.4239 -0.0879 0.5065 -0.0113 0.0015 -0.0833 'X-RAY DIFFRACTION' 3 ? refined 11.2157 21.4286 9.8235 0.7739 0.7477 0.6328 0.0721 -0.1878 -0.1510 1.9677 2.4334 1.5562 -0.4044 1.3732 0.8455 -0.0558 -0.3828 0.0732 1.6146 0.6221 -1.7900 -0.4452 0.5864 -0.6546 'X-RAY DIFFRACTION' 4 ? refined -9.3453 17.3554 -6.8239 0.5259 0.3766 0.3999 0.0056 -0.1779 -0.0739 2.9439 6.7722 3.2680 -0.3818 1.4575 0.2949 -0.0580 0.5249 0.0241 -0.6571 0.0619 1.7154 -0.3875 0.1595 -0.0810 'X-RAY DIFFRACTION' 5 ? refined -20.4499 22.7089 -3.6732 0.4074 0.4203 1.1362 0.0709 -0.2873 0.0497 3.3889 1.6520 2.0800 -1.4258 -0.1098 1.4558 0.3308 0.1962 -1.2908 -0.7660 -0.5838 2.9650 -0.2008 -0.8740 -0.0887 'X-RAY DIFFRACTION' 6 ? refined 13.2479 6.1074 4.2547 0.2705 0.5768 0.9314 0.0176 0.0438 -0.1314 1.3208 7.4591 3.4127 -1.1754 0.7831 1.1538 -0.1713 0.1758 -1.4273 0.1470 0.4641 -1.0127 0.4390 -0.3498 -0.1936 # loop_ _pdbx_refine_tls_group.pdbx_refine_id _pdbx_refine_tls_group.id _pdbx_refine_tls_group.refine_tls_id _pdbx_refine_tls_group.beg_auth_asym_id _pdbx_refine_tls_group.beg_auth_seq_id _pdbx_refine_tls_group.beg_label_asym_id _pdbx_refine_tls_group.beg_label_seq_id _pdbx_refine_tls_group.end_auth_asym_id _pdbx_refine_tls_group.end_auth_seq_id _pdbx_refine_tls_group.end_label_asym_id _pdbx_refine_tls_group.end_label_seq_id _pdbx_refine_tls_group.selection _pdbx_refine_tls_group.selection_details 'X-RAY DIFFRACTION' 1 1 ? ? ? ? ? ? ? ? ? ;chain 'A' and (resid 13 through 23 ) ; 'X-RAY DIFFRACTION' 2 2 ? ? ? ? ? ? ? ? ? ;chain 'A' and (resid 24 through 46 ) ; 'X-RAY DIFFRACTION' 3 3 ? ? ? ? ? ? ? ? ? ;chain 'A' and (resid 47 through 51 ) ; 'X-RAY DIFFRACTION' 4 4 ? ? ? ? ? ? ? ? ? ;chain 'A' and (resid 52 through 61 ) ; 'X-RAY DIFFRACTION' 5 5 ? ? ? ? ? ? ? ? ? ;chain 'A' and (resid 62 through 72 ) ; 'X-RAY DIFFRACTION' 6 6 ? ? ? ? ? ? ? ? ? ;chain 'A' and (resid 73 through 83 ) ; # loop_ _software.pdbx_ordinal _software.name _software.version _software.date _software.type _software.contact_author _software.contact_author_email _software.classification _software.location _software.language _software.citation_id 1 PHENIX 1.8_1069 ? package 'Paul D. Adams' 29Gdams@lbl.gov refinement http://www.phenix-online.org/ C++ ? 2 PDB_EXTRACT 3.11 'April 22, 2011' package PDB deposit@deposit.rcsb.org 'data extraction' http://sw-tools.pdb.org/apps/PDB_EXTRACT/ C++ ? 3 ADSC Quantum ? ? ? ? 'data collection' ? ? ? 4 XDS . ? ? ? ? 'data reduction' ? ? ? 5 XDS . ? ? ? ? 'data scaling' ? ? ? 6 PHASER . ? ? ? ? phasing ? ? ? # _pdbx_entry_details.entry_id 4LX5 _pdbx_entry_details.nonpolymer_details ? _pdbx_entry_details.sequence_details 'Synthetic construct from In vitro transcription' _pdbx_entry_details.compound_details ? _pdbx_entry_details.source_details ? _pdbx_entry_details.has_ligand_of_interest ? # _pdbx_validate_close_contact.id 1 _pdbx_validate_close_contact.PDB_model_num 1 _pdbx_validate_close_contact.auth_atom_id_1 O6 _pdbx_validate_close_contact.auth_asym_id_1 A _pdbx_validate_close_contact.auth_comp_id_1 G _pdbx_validate_close_contact.auth_seq_id_1 14 _pdbx_validate_close_contact.PDB_ins_code_1 ? _pdbx_validate_close_contact.label_alt_id_1 ? _pdbx_validate_close_contact.auth_atom_id_2 O _pdbx_validate_close_contact.auth_asym_id_2 A _pdbx_validate_close_contact.auth_comp_id_2 HOH _pdbx_validate_close_contact.auth_seq_id_2 605 _pdbx_validate_close_contact.PDB_ins_code_2 ? _pdbx_validate_close_contact.label_alt_id_2 ? _pdbx_validate_close_contact.dist 2.17 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal 29G NAB N N N 1 29G CAJ C Y N 2 29G NAG N Y N 3 29G C5 C Y N 4 29G C6 C Y N 5 29G N1 N Y N 6 29G C2 C Y N 7 29G N3 N Y N 8 29G C4 C Y N 9 29G NAH N Y N 10 29G CAI C Y N 11 29G NAA N N N 12 29G H1 H N N 13 29G H2 H N N 14 29G H3 H N N 15 29G H4 H N N 16 29G H5 H N N 17 29G H6 H N N 18 A OP3 O N N 19 A P P N N 20 A OP1 O N N 21 A OP2 O N N 22 A "O5'" O N N 23 A "C5'" C N N 24 A "C4'" C N R 25 A "O4'" O N N 26 A "C3'" C N S 27 A "O3'" O N N 28 A "C2'" C N R 29 A "O2'" O N N 30 A "C1'" C N R 31 A N9 N Y N 32 A C8 C Y N 33 A N7 N Y N 34 A C5 C Y N 35 A C6 C Y N 36 A N6 N N N 37 A N1 N Y N 38 A C2 C Y N 39 A N3 N Y N 40 A C4 C Y N 41 A HOP3 H N N 42 A HOP2 H N N 43 A "H5'" H N N 44 A "H5''" H N N 45 A "H4'" H N N 46 A "H3'" H N N 47 A "HO3'" H N N 48 A "H2'" H N N 49 A "HO2'" H N N 50 A "H1'" H N N 51 A H8 H N N 52 A H61 H N N 53 A H62 H N N 54 A H2 H N N 55 C OP3 O N N 56 C P P N N 57 C OP1 O N N 58 C OP2 O N N 59 C "O5'" O N N 60 C "C5'" C N N 61 C "C4'" C N R 62 C "O4'" O N N 63 C "C3'" C N S 64 C "O3'" O N N 65 C "C2'" C N R 66 C "O2'" O N N 67 C "C1'" C N R 68 C N1 N N N 69 C C2 C N N 70 C O2 O N N 71 C N3 N N N 72 C C4 C N N 73 C N4 N N N 74 C C5 C N N 75 C C6 C N N 76 C HOP3 H N N 77 C HOP2 H N N 78 C "H5'" H N N 79 C "H5''" H N N 80 C "H4'" H N N 81 C "H3'" H N N 82 C "HO3'" H N N 83 C "H2'" H N N 84 C "HO2'" H N N 85 C "H1'" H N N 86 C H41 H N N 87 C H42 H N N 88 C H5 H N N 89 C H6 H N N 90 G OP3 O N N 91 G P P N N 92 G OP1 O N N 93 G OP2 O N N 94 G "O5'" O N N 95 G "C5'" C N N 96 G "C4'" C N R 97 G "O4'" O N N 98 G "C3'" C N S 99 G "O3'" O N N 100 G "C2'" C N R 101 G "O2'" O N N 102 G "C1'" C N R 103 G N9 N Y N 104 G C8 C Y N 105 G N7 N Y N 106 G C5 C Y N 107 G C6 C N N 108 G O6 O N N 109 G N1 N N N 110 G C2 C N N 111 G N2 N N N 112 G N3 N N N 113 G C4 C Y N 114 G HOP3 H N N 115 G HOP2 H N N 116 G "H5'" H N N 117 G "H5''" H N N 118 G "H4'" H N N 119 G "H3'" H N N 120 G "HO3'" H N N 121 G "H2'" H N N 122 G "HO2'" H N N 123 G "H1'" H N N 124 G H8 H N N 125 G H1 H N N 126 G H21 H N N 127 G H22 H N N 128 HOH O O N N 129 HOH H1 H N N 130 HOH H2 H N N 131 MG MG MG N N 132 U OP3 O N N 133 U P P N N 134 U OP1 O N N 135 U OP2 O N N 136 U "O5'" O N N 137 U "C5'" C N N 138 U "C4'" C N R 139 U "O4'" O N N 140 U "C3'" C N S 141 U "O3'" O N N 142 U "C2'" C N R 143 U "O2'" O N N 144 U "C1'" C N R 145 U N1 N N N 146 U C2 C N N 147 U O2 O N N 148 U N3 N N N 149 U C4 C N N 150 U O4 O N N 151 U C5 C N N 152 U C6 C N N 153 U HOP3 H N N 154 U HOP2 H N N 155 U "H5'" H N N 156 U "H5''" H N N 157 U "H4'" H N N 158 U "H3'" H N N 159 U "HO3'" H N N 160 U "H2'" H N N 161 U "HO2'" H N N 162 U "H1'" H N N 163 U H3 H N N 164 U H5 H N N 165 U H6 H N N 166 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal 29G NAA CAI sing N N 1 29G CAI NAG doub Y N 2 29G CAI NAH sing Y N 3 29G NAG CAJ sing Y N 4 29G NAH C4 doub Y N 5 29G CAJ NAB sing N N 6 29G CAJ C5 doub Y N 7 29G C4 C5 sing Y N 8 29G C4 N3 sing Y N 9 29G C5 C6 sing Y N 10 29G N3 C2 doub Y N 11 29G C6 N1 doub Y N 12 29G C2 N1 sing Y N 13 29G NAB H1 sing N N 14 29G NAB H2 sing N N 15 29G C6 H3 sing N N 16 29G C2 H4 sing N N 17 29G NAA H5 sing N N 18 29G NAA H6 sing N N 19 A OP3 P sing N N 20 A OP3 HOP3 sing N N 21 A P OP1 doub N N 22 A P OP2 sing N N 23 A P "O5'" sing N N 24 A OP2 HOP2 sing N N 25 A "O5'" "C5'" sing N N 26 A "C5'" "C4'" sing N N 27 A "C5'" "H5'" sing N N 28 A "C5'" "H5''" sing N N 29 A "C4'" "O4'" sing N N 30 A "C4'" "C3'" sing N N 31 A "C4'" "H4'" sing N N 32 A "O4'" "C1'" sing N N 33 A "C3'" "O3'" sing N N 34 A "C3'" "C2'" sing N N 35 A "C3'" "H3'" sing N N 36 A "O3'" "HO3'" sing N N 37 A "C2'" "O2'" sing N N 38 A "C2'" "C1'" sing N N 39 A "C2'" "H2'" sing N N 40 A "O2'" "HO2'" sing N N 41 A "C1'" N9 sing N N 42 A "C1'" "H1'" sing N N 43 A N9 C8 sing Y N 44 A N9 C4 sing Y N 45 A C8 N7 doub Y N 46 A C8 H8 sing N N 47 A N7 C5 sing Y N 48 A C5 C6 sing Y N 49 A C5 C4 doub Y N 50 A C6 N6 sing N N 51 A C6 N1 doub Y N 52 A N6 H61 sing N N 53 A N6 H62 sing N N 54 A N1 C2 sing Y N 55 A C2 N3 doub Y N 56 A C2 H2 sing N N 57 A N3 C4 sing Y N 58 C OP3 P sing N N 59 C OP3 HOP3 sing N N 60 C P OP1 doub N N 61 C P OP2 sing N N 62 C P "O5'" sing N N 63 C OP2 HOP2 sing N N 64 C "O5'" "C5'" sing N N 65 C "C5'" "C4'" sing N N 66 C "C5'" "H5'" sing N N 67 C "C5'" "H5''" sing N N 68 C "C4'" "O4'" sing N N 69 C "C4'" "C3'" sing N N 70 C "C4'" "H4'" sing N N 71 C "O4'" "C1'" sing N N 72 C "C3'" "O3'" sing N N 73 C "C3'" "C2'" sing N N 74 C "C3'" "H3'" sing N N 75 C "O3'" "HO3'" sing N N 76 C "C2'" "O2'" sing N N 77 C "C2'" "C1'" sing N N 78 C "C2'" "H2'" sing N N 79 C "O2'" "HO2'" sing N N 80 C "C1'" N1 sing N N 81 C "C1'" "H1'" sing N N 82 C N1 C2 sing N N 83 C N1 C6 sing N N 84 C C2 O2 doub N N 85 C C2 N3 sing N N 86 C N3 C4 doub N N 87 C C4 N4 sing N N 88 C C4 C5 sing N N 89 C N4 H41 sing N N 90 C N4 H42 sing N N 91 C C5 C6 doub N N 92 C C5 H5 sing N N 93 C C6 H6 sing N N 94 G OP3 P sing N N 95 G OP3 HOP3 sing N N 96 G P OP1 doub N N 97 G P OP2 sing N N 98 G P "O5'" sing N N 99 G OP2 HOP2 sing N N 100 G "O5'" "C5'" sing N N 101 G "C5'" "C4'" sing N N 102 G "C5'" "H5'" sing N N 103 G "C5'" "H5''" sing N N 104 G "C4'" "O4'" sing N N 105 G "C4'" "C3'" sing N N 106 G "C4'" "H4'" sing N N 107 G "O4'" "C1'" sing N N 108 G "C3'" "O3'" sing N N 109 G "C3'" "C2'" sing N N 110 G "C3'" "H3'" sing N N 111 G "O3'" "HO3'" sing N N 112 G "C2'" "O2'" sing N N 113 G "C2'" "C1'" sing N N 114 G "C2'" "H2'" sing N N 115 G "O2'" "HO2'" sing N N 116 G "C1'" N9 sing N N 117 G "C1'" "H1'" sing N N 118 G N9 C8 sing Y N 119 G N9 C4 sing Y N 120 G C8 N7 doub Y N 121 G C8 H8 sing N N 122 G N7 C5 sing Y N 123 G C5 C6 sing N N 124 G C5 C4 doub Y N 125 G C6 O6 doub N N 126 G C6 N1 sing N N 127 G N1 C2 sing N N 128 G N1 H1 sing N N 129 G C2 N2 sing N N 130 G C2 N3 doub N N 131 G N2 H21 sing N N 132 G N2 H22 sing N N 133 G N3 C4 sing N N 134 HOH O H1 sing N N 135 HOH O H2 sing N N 136 U OP3 P sing N N 137 U OP3 HOP3 sing N N 138 U P OP1 doub N N 139 U P OP2 sing N N 140 U P "O5'" sing N N 141 U OP2 HOP2 sing N N 142 U "O5'" "C5'" sing N N 143 U "C5'" "C4'" sing N N 144 U "C5'" "H5'" sing N N 145 U "C5'" "H5''" sing N N 146 U "C4'" "O4'" sing N N 147 U "C4'" "C3'" sing N N 148 U "C4'" "H4'" sing N N 149 U "O4'" "C1'" sing N N 150 U "C3'" "O3'" sing N N 151 U "C3'" "C2'" sing N N 152 U "C3'" "H3'" sing N N 153 U "O3'" "HO3'" sing N N 154 U "C2'" "O2'" sing N N 155 U "C2'" "C1'" sing N N 156 U "C2'" "H2'" sing N N 157 U "O2'" "HO2'" sing N N 158 U "C1'" N1 sing N N 159 U "C1'" "H1'" sing N N 160 U N1 C2 sing N N 161 U N1 C6 sing N N 162 U C2 O2 doub N N 163 U C2 N3 sing N N 164 U N3 C4 sing N N 165 U N3 H3 sing N N 166 U C4 O4 doub N N 167 U C4 C5 sing N N 168 U C5 C6 doub N N 169 U C5 H5 sing N N 170 U C6 H6 sing N N 171 # loop_ _ndb_struct_conf_na.entry_id _ndb_struct_conf_na.feature 4LX5 'double helix' 4LX5 'a-form double helix' 4LX5 'mismatched base pair' 4LX5 'internal loop' 4LX5 'triple helix' 4LX5 'three-way junction' # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 'pyrimido[4,5-d]pyrimidine-2,4-diamine' 29G 3 'MAGNESIUM ION' MG 4 water HOH # _pdbx_initial_refinement_model.id 1 _pdbx_initial_refinement_model.entity_id_list ? _pdbx_initial_refinement_model.type 'experimental model' _pdbx_initial_refinement_model.source_name PDB _pdbx_initial_refinement_model.accession_code 3LA5 _pdbx_initial_refinement_model.details 'PDB ENTRY 3LA5' #