data_4LYS # _entry.id 4LYS # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.281 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code PDB 4LYS RCSB RCSB081253 WWPDB D_1000081253 # loop_ _pdbx_database_related.db_name _pdbx_database_related.db_id _pdbx_database_related.details _pdbx_database_related.content_type PDB 4LYI . unspecified PDB 4LYW . unspecified PDB 4LZR . unspecified PDB 4LZS . unspecified # _pdbx_database_status.entry_id 4LYS _pdbx_database_status.status_code REL _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.recvd_initial_deposition_date 2013-07-31 _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Wohlwend, D.' 1 'Gerhardt, S.' 2 'Einsle, O.' 3 # _citation.id primary _citation.title '4-Acyl pyrroles: mimicking acetylated lysines in histone code reading.' _citation.journal_abbrev Angew.Chem.Int.Ed.Engl. _citation.journal_volume 52 _citation.page_first 14055 _citation.page_last 14059 _citation.year 2013 _citation.journal_id_ASTM ? _citation.country GE _citation.journal_id_ISSN 1433-7851 _citation.journal_id_CSD 9999 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 24272870 _citation.pdbx_database_id_DOI 10.1002/anie.201307652 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal primary 'Lucas, X.' 1 primary 'Wohlwend, D.' 2 primary 'Hugle, M.' 3 primary 'Schmidtkunz, K.' 4 primary 'Gerhardt, S.' 5 primary 'Schule, R.' 6 primary 'Jung, M.' 7 primary 'Einsle, O.' 8 primary 'Gunther, S.' 9 # _cell.length_a 41.047 _cell.length_b 108.072 _cell.length_c 30.464 _cell.angle_alpha 90.000 _cell.angle_beta 90.000 _cell.angle_gamma 90.000 _cell.entry_id 4LYS _cell.pdbx_unique_axis ? _cell.Z_PDB 4 _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.space_group_name_H-M 'P 21 21 2' _symmetry.entry_id 4LYS _symmetry.Int_Tables_number 18 _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'Bromodomain-containing protein 4' 15012.301 1 ? ? 'FIRST BROMODOMAIN DOMAIN (UNP RESIDUES 44-168)' ? 2 non-polymer syn 'SODIUM ION' 22.990 2 ? ? ? ? 3 non-polymer syn 'N-[(7S)-10-hydroxy-1,2,3-trimethoxy-9-oxo-5,6,7,9-tetrahydrobenzo[a]heptalen-7-yl]acetamide' 385.410 1 ? ? ? ? 4 water nat water 18.015 121 ? ? ? ? # _entity_name_com.entity_id 1 _entity_name_com.name 'Protein HUNK1' # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;MNPPPPETSNPNKPKRQTNQLQYLLRVVLKTLWKHQFAWPFQQPVDAVKLNLPDYYKIIKTPMDMGTIKKRLENNYYWNA QECIQDFNTMFTNCYIYNKPGDDIVLMAEALEKLFLQKINELPTEE ; _entity_poly.pdbx_seq_one_letter_code_can ;MNPPPPETSNPNKPKRQTNQLQYLLRVVLKTLWKHQFAWPFQQPVDAVKLNLPDYYKIIKTPMDMGTIKKRLENNYYWNA QECIQDFNTMFTNCYIYNKPGDDIVLMAEALEKLFLQKINELPTEE ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 MET n 1 2 ASN n 1 3 PRO n 1 4 PRO n 1 5 PRO n 1 6 PRO n 1 7 GLU n 1 8 THR n 1 9 SER n 1 10 ASN n 1 11 PRO n 1 12 ASN n 1 13 LYS n 1 14 PRO n 1 15 LYS n 1 16 ARG n 1 17 GLN n 1 18 THR n 1 19 ASN n 1 20 GLN n 1 21 LEU n 1 22 GLN n 1 23 TYR n 1 24 LEU n 1 25 LEU n 1 26 ARG n 1 27 VAL n 1 28 VAL n 1 29 LEU n 1 30 LYS n 1 31 THR n 1 32 LEU n 1 33 TRP n 1 34 LYS n 1 35 HIS n 1 36 GLN n 1 37 PHE n 1 38 ALA n 1 39 TRP n 1 40 PRO n 1 41 PHE n 1 42 GLN n 1 43 GLN n 1 44 PRO n 1 45 VAL n 1 46 ASP n 1 47 ALA n 1 48 VAL n 1 49 LYS n 1 50 LEU n 1 51 ASN n 1 52 LEU n 1 53 PRO n 1 54 ASP n 1 55 TYR n 1 56 TYR n 1 57 LYS n 1 58 ILE n 1 59 ILE n 1 60 LYS n 1 61 THR n 1 62 PRO n 1 63 MET n 1 64 ASP n 1 65 MET n 1 66 GLY n 1 67 THR n 1 68 ILE n 1 69 LYS n 1 70 LYS n 1 71 ARG n 1 72 LEU n 1 73 GLU n 1 74 ASN n 1 75 ASN n 1 76 TYR n 1 77 TYR n 1 78 TRP n 1 79 ASN n 1 80 ALA n 1 81 GLN n 1 82 GLU n 1 83 CYS n 1 84 ILE n 1 85 GLN n 1 86 ASP n 1 87 PHE n 1 88 ASN n 1 89 THR n 1 90 MET n 1 91 PHE n 1 92 THR n 1 93 ASN n 1 94 CYS n 1 95 TYR n 1 96 ILE n 1 97 TYR n 1 98 ASN n 1 99 LYS n 1 100 PRO n 1 101 GLY n 1 102 ASP n 1 103 ASP n 1 104 ILE n 1 105 VAL n 1 106 LEU n 1 107 MET n 1 108 ALA n 1 109 GLU n 1 110 ALA n 1 111 LEU n 1 112 GLU n 1 113 LYS n 1 114 LEU n 1 115 PHE n 1 116 LEU n 1 117 GLN n 1 118 LYS n 1 119 ILE n 1 120 ASN n 1 121 GLU n 1 122 LEU n 1 123 PRO n 1 124 THR n 1 125 GLU n 1 126 GLU n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name human _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene 'BRD4, HUNK1' _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Homo sapiens' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 9606 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 469008 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain 'BL21(DE3)' _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type plasmid _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name pNIC28-Bsa4 _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code BRD4_HUMAN _struct_ref.pdbx_db_accession O60885 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;NPPPPETSNPNKPKRQTNQLQYLLRVVLKTLWKHQFAWPFQQPVDAVKLNLPDYYKIIKTPMDMGTIKKRLENNYYWNAQ ECIQDFNTMFTNCYIYNKPGDDIVLMAEALEKLFLQKINELPTEE ; _struct_ref.pdbx_align_begin 44 _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 4LYS _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 2 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 126 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession O60885 _struct_ref_seq.db_align_beg 44 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 168 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 44 _struct_ref_seq.pdbx_auth_seq_align_end 168 # _struct_ref_seq_dif.align_id 1 _struct_ref_seq_dif.pdbx_pdb_id_code 4LYS _struct_ref_seq_dif.mon_id MET _struct_ref_seq_dif.pdbx_pdb_strand_id A _struct_ref_seq_dif.seq_num 1 _struct_ref_seq_dif.pdbx_pdb_ins_code ? _struct_ref_seq_dif.pdbx_seq_db_name UNP _struct_ref_seq_dif.pdbx_seq_db_accession_code O60885 _struct_ref_seq_dif.db_mon_id ? _struct_ref_seq_dif.pdbx_seq_db_seq_num ? _struct_ref_seq_dif.details 'INITIATING METHIONINE' _struct_ref_seq_dif.pdbx_auth_seq_num 43 _struct_ref_seq_dif.pdbx_ordinal 1 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight 2SJ non-polymer . 'N-[(7S)-10-hydroxy-1,2,3-trimethoxy-9-oxo-5,6,7,9-tetrahydrobenzo[a]heptalen-7-yl]acetamide' Colchiceine 'C21 H23 N O6' 385.410 ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 NA non-polymer . 'SODIUM ION' ? 'Na 1' 22.990 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.crystals_number 1 _exptl.entry_id 4LYS _exptl.method 'X-RAY DIFFRACTION' # _exptl_crystal.id 1 _exptl_crystal.density_Matthews 2.25 _exptl_crystal.density_meas ? _exptl_crystal.density_percent_sol 45.34 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION' _exptl_crystal_grow.pH 6.5 _exptl_crystal_grow.temp 293 _exptl_crystal_grow.pdbx_details 'bis tris, PEG 3350, NaCl, pH 6.5, vapor diffusion, temperature 293K' _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'RIGAKU SATURN 944+' _diffrn_detector.pdbx_collection_date 2012-06-28 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.monochromator 'VariMax VHF focusing mirrors' _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 1.54187 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source 'ROTATING ANODE' _diffrn_source.type 'RIGAKU MICROMAX-007 HF' _diffrn_source.pdbx_wavelength_list 1.54187 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_synchrotron_site ? _diffrn_source.pdbx_synchrotron_beamline ? # _reflns.entry_id 4LYS _reflns.d_resolution_high 1.83 _reflns.d_resolution_low 41.047 _reflns.number_all 12331 _reflns.number_obs 12331 _reflns.pdbx_netI_over_sigmaI 9.600 _reflns.pdbx_Rsym_value 0.089 _reflns.pdbx_redundancy 3.000 _reflns.percent_possible_obs 98.700 _reflns.observed_criterion_sigma_F ? _reflns.observed_criterion_sigma_I ? _reflns.pdbx_Rmerge_I_obs ? _reflns.B_iso_Wilson_estimate ? _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_ordinal 1 _reflns.pdbx_diffrn_id 1 # loop_ _reflns_shell.d_res_high _reflns_shell.d_res_low _reflns_shell.number_measured_obs _reflns_shell.number_measured_all _reflns_shell.number_unique_obs _reflns_shell.Rmerge_I_obs _reflns_shell.meanI_over_sigI_obs _reflns_shell.pdbx_Rsym_value _reflns_shell.pdbx_chi_squared _reflns_shell.pdbx_redundancy _reflns_shell.percent_possible_obs _reflns_shell.number_unique_all _reflns_shell.percent_possible_all _reflns_shell.pdbx_ordinal _reflns_shell.pdbx_diffrn_id 1.830 1.930 ? 4367 ? 0.409 1.900 0.409 ? 2.500 ? 1729 97.300 1 1 1.930 2.050 ? 5001 ? 0.322 2.400 0.322 ? 3.000 ? 1693 99.400 2 1 2.050 2.190 ? 4776 ? 0.217 3.600 0.217 ? 3.000 ? 1579 99.800 3 1 2.190 2.370 ? 4490 ? 0.172 4.500 0.172 ? 3.100 ? 1462 98.300 4 1 2.370 2.590 ? 4225 ? 0.134 5.800 0.134 ? 3.100 ? 1361 99.300 5 1 2.590 2.900 ? 3886 ? 0.097 8.100 0.097 ? 3.100 ? 1253 99.700 6 1 2.900 3.350 ? 3492 ? 0.060 13.100 0.060 ? 3.100 ? 1129 99.500 7 1 3.350 4.100 ? 2873 ? 0.041 18.800 0.041 ? 3.100 ? 940 98.200 8 1 4.100 5.800 ? 2279 ? 0.034 21.900 0.034 ? 3.000 ? 753 97.900 9 1 5.800 41.047 ? 1218 ? 0.028 26.200 0.028 ? 2.800 ? 432 94.100 10 1 # _refine.entry_id 4LYS _refine.ls_d_res_high 1.83 _refine.ls_d_res_low 29.3400 _refine.pdbx_ls_sigma_F 0.000 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.ls_percent_reflns_obs 98.3300 _refine.ls_number_reflns_obs 9566 _refine.ls_number_reflns_all ? _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.pdbx_R_Free_selection_details RANDOM _refine.details 'HYDROGENS HAVE BEEN USED IF PRESENT IN THE INPUT' _refine.ls_R_factor_all ? _refine.ls_R_factor_obs 0.2185 _refine.ls_R_factor_R_work 0.2159 _refine.ls_wR_factor_R_work 0.1825 _refine.ls_R_factor_R_free 0.2670 _refine.ls_wR_factor_R_free 0.2333 _refine.ls_percent_reflns_R_free 4.9000 _refine.ls_number_reflns_R_free 464 _refine.ls_R_factor_R_free_error ? _refine.B_iso_mean 18.6806 _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.pdbx_isotropic_thermal_model ? _refine.aniso_B[1][1] 0.5200 _refine.aniso_B[2][2] -0.2400 _refine.aniso_B[3][3] -0.2800 _refine.aniso_B[1][2] -0.0000 _refine.aniso_B[1][3] -0.0000 _refine.aniso_B[2][3] 0.0000 _refine.correlation_coeff_Fo_to_Fc 0.9220 _refine.correlation_coeff_Fo_to_Fc_free 0.8740 _refine.overall_SU_R_Cruickshank_DPI 0.2307 _refine.overall_SU_R_free 0.1973 _refine.pdbx_overall_ESU_R 0.2310 _refine.pdbx_overall_ESU_R_Free 0.1970 _refine.overall_SU_ML 0.1510 _refine.overall_SU_B 9.5070 _refine.solvent_model_details MASK _refine.pdbx_solvent_vdw_probe_radii 1.2000 _refine.pdbx_solvent_ion_probe_radii 0.8000 _refine.pdbx_solvent_shrinkage_radii 0.8000 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD' _refine.pdbx_stereochem_target_val_spec_case ? _refine.overall_FOM_work_R_set 0.7961 _refine.B_iso_max 41.060 _refine.B_iso_min 6.130 _refine.pdbx_overall_phase_error ? _refine.occupancy_max 1.000 _refine.occupancy_min 0.500 _refine.pdbx_ls_sigma_I ? _refine.ls_redundancy_reflns_obs ? _refine.ls_R_factor_R_free_error_details ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.overall_FOM_free_R_set ? _refine.pdbx_diffrn_id 1 _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 1037 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 30 _refine_hist.number_atoms_solvent 121 _refine_hist.number_atoms_total 1188 _refine_hist.d_res_high 1.83 _refine_hist.d_res_low 29.3400 # loop_ _refine_ls_restr.type _refine_ls_restr.number _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.pdbx_restraint_function _refine_ls_restr.pdbx_refine_id r_bond_refined_d 1097 0.007 0.020 ? ? 'X-RAY DIFFRACTION' r_bond_other_d 23 0.003 0.020 ? ? 'X-RAY DIFFRACTION' r_angle_refined_deg 1495 1.314 1.999 ? ? 'X-RAY DIFFRACTION' r_angle_other_deg 48 1.974 3.000 ? ? 'X-RAY DIFFRACTION' r_dihedral_angle_1_deg 123 4.696 5.000 ? ? 'X-RAY DIFFRACTION' r_dihedral_angle_2_deg 52 36.113 25.769 ? ? 'X-RAY DIFFRACTION' r_dihedral_angle_3_deg 192 17.125 15.000 ? ? 'X-RAY DIFFRACTION' r_dihedral_angle_4_deg 3 22.835 15.000 ? ? 'X-RAY DIFFRACTION' r_chiral_restr 156 0.074 0.200 ? ? 'X-RAY DIFFRACTION' r_gen_planes_refined 851 0.007 0.022 ? ? 'X-RAY DIFFRACTION' r_gen_planes_other 9 0.007 0.020 ? ? 'X-RAY DIFFRACTION' r_mcbond_it 495 0.132 0.575 ? ? 'X-RAY DIFFRACTION' r_mcangle_it 617 0.234 0.862 ? ? 'X-RAY DIFFRACTION' r_scbond_it 601 0.192 0.621 ? ? 'X-RAY DIFFRACTION' # _refine_ls_shell.d_res_high 1.83 _refine_ls_shell.d_res_low 2.0520 _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.percent_reflns_obs 99.4500 _refine_ls_shell.number_reflns_R_work 684 _refine_ls_shell.R_factor_all ? _refine_ls_shell.R_factor_R_work 0.2320 _refine_ls_shell.R_factor_R_free 0.3660 _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.number_reflns_R_free 34 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.number_reflns_all 718 _refine_ls_shell.number_reflns_obs ? _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' # _struct.entry_id 4LYS _struct.title 'Crystal Structure of BRD4(1) bound to Colchiceine' _struct.pdbx_descriptor 'Bromodomain-containing protein 4' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 4LYS _struct_keywords.text 'bromodomain, BRD4 inhibitor, epigenetic reader protein, acetylated lysine, histone tail, nucleus, PROTEIN BINDING-INHIBITOR complex' _struct_keywords.pdbx_keywords 'PROTEIN BINDING/INHIBITOR' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 2 ? D N N 3 ? E N N 4 ? # _struct_biol.id 1 _struct_biol.details ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 THR A 18 ? VAL A 27 ? THR A 60 VAL A 69 1 ? 10 HELX_P HELX_P2 2 VAL A 27 ? LYS A 34 ? VAL A 69 LYS A 76 1 ? 8 HELX_P HELX_P3 3 ALA A 38 ? GLN A 42 ? ALA A 80 GLN A 84 5 ? 5 HELX_P HELX_P4 4 ASP A 46 ? ASN A 51 ? ASP A 88 ASN A 93 1 ? 6 HELX_P HELX_P5 5 ASP A 54 ? ILE A 59 ? ASP A 96 ILE A 101 1 ? 6 HELX_P HELX_P6 6 ASP A 64 ? ASN A 74 ? ASP A 106 ASN A 116 1 ? 11 HELX_P HELX_P7 7 ASN A 79 ? ASN A 98 ? ASN A 121 ASN A 140 1 ? 20 HELX_P HELX_P8 8 ASP A 102 ? ASN A 120 ? ASP A 144 ASN A 162 1 ? 19 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale1 covale ? ? A ASN 98 ND2 ? ? ? 1_555 D 2SJ . C4 ? ? A ASN 140 A 2SJ 203 1_555 ? ? ? ? ? ? ? 2.087 ? metalc1 metalc ? ? B NA . NA ? ? ? 1_555 E HOH . O ? ? A NA 201 A HOH 302 1_555 ? ? ? ? ? ? ? 2.009 ? metalc2 metalc ? ? C NA . NA ? ? ? 1_555 E HOH . O ? ? A NA 202 A HOH 365 1_555 ? ? ? ? ? ? ? 2.751 ? metalc3 metalc ? ? B NA . NA ? ? ? 1_555 D 2SJ . O6 ? ? A NA 201 A 2SJ 203 1_555 ? ? ? ? ? ? ? 2.223 ? metalc4 metalc ? ? B NA . NA ? ? ? 1_555 D 2SJ . O5 ? ? A NA 201 A 2SJ 203 1_555 ? ? ? ? ? ? ? 2.326 ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference covale ? ? metalc ? ? # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software ? ? ? ? 4 'BINDING SITE FOR RESIDUE NA A 201' AC2 Software ? ? ? ? 3 'BINDING SITE FOR RESIDUE NA A 202' AC3 Software ? ? ? ? 12 'BINDING SITE FOR RESIDUE 2SJ A 203' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 4 2SJ D . ? 2SJ A 203 . ? 1_555 ? 2 AC1 4 2SJ D . ? 2SJ A 203 . ? 2_565 ? 3 AC1 4 HOH E . ? HOH A 302 . ? 2_565 ? 4 AC1 4 HOH E . ? HOH A 302 . ? 1_555 ? 5 AC2 3 HIS A 35 ? HIS A 77 . ? 1_555 ? 6 AC2 3 HIS A 35 ? HIS A 77 . ? 2_665 ? 7 AC2 3 HOH E . ? HOH A 365 . ? 1_555 ? 8 AC3 12 PRO A 40 ? PRO A 82 . ? 1_555 ? 9 AC3 12 PHE A 41 ? PHE A 83 . ? 1_555 ? 10 AC3 12 LEU A 50 ? LEU A 92 . ? 1_555 ? 11 AC3 12 ASN A 98 ? ASN A 140 . ? 1_555 ? 12 AC3 12 ILE A 104 ? ILE A 146 . ? 1_555 ? 13 AC3 12 NA B . ? NA A 201 . ? 2_565 ? 14 AC3 12 NA B . ? NA A 201 . ? 1_555 ? 15 AC3 12 HOH E . ? HOH A 302 . ? 1_555 ? 16 AC3 12 HOH E . ? HOH A 320 . ? 1_555 ? 17 AC3 12 HOH E . ? HOH A 322 . ? 1_555 ? 18 AC3 12 HOH E . ? HOH A 351 . ? 1_555 ? 19 AC3 12 HOH E . ? HOH A 379 . ? 1_555 ? # _atom_sites.entry_id 4LYS _atom_sites.fract_transf_matrix[1][1] 0.024362 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] -0.000000 _atom_sites.fract_transf_matrix[2][2] 0.009253 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] -0.000000 _atom_sites.fract_transf_matrix[3][3] 0.032826 _atom_sites.fract_transf_vector[1] 0.000000 _atom_sites.fract_transf_vector[2] 0.000000 _atom_sites.fract_transf_vector[3] 0.000000 # loop_ _atom_type.symbol C N NA O S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 MET 1 43 43 MET MET A . n A 1 2 ASN 2 44 44 ASN ASN A . n A 1 3 PRO 3 45 45 PRO PRO A . n A 1 4 PRO 4 46 46 PRO PRO A . n A 1 5 PRO 5 47 47 PRO PRO A . n A 1 6 PRO 6 48 48 PRO PRO A . n A 1 7 GLU 7 49 49 GLU GLU A . n A 1 8 THR 8 50 50 THR THR A . n A 1 9 SER 9 51 51 SER SER A . n A 1 10 ASN 10 52 52 ASN ASN A . n A 1 11 PRO 11 53 53 PRO PRO A . n A 1 12 ASN 12 54 54 ASN ASN A . n A 1 13 LYS 13 55 55 LYS LYS A . n A 1 14 PRO 14 56 56 PRO PRO A . n A 1 15 LYS 15 57 57 LYS LYS A . n A 1 16 ARG 16 58 58 ARG ARG A . n A 1 17 GLN 17 59 59 GLN GLN A . n A 1 18 THR 18 60 60 THR THR A . n A 1 19 ASN 19 61 61 ASN ASN A . n A 1 20 GLN 20 62 62 GLN GLN A . n A 1 21 LEU 21 63 63 LEU LEU A . n A 1 22 GLN 22 64 64 GLN GLN A . n A 1 23 TYR 23 65 65 TYR TYR A . n A 1 24 LEU 24 66 66 LEU LEU A . n A 1 25 LEU 25 67 67 LEU LEU A . n A 1 26 ARG 26 68 68 ARG ARG A . n A 1 27 VAL 27 69 69 VAL VAL A . n A 1 28 VAL 28 70 70 VAL VAL A . n A 1 29 LEU 29 71 71 LEU LEU A . n A 1 30 LYS 30 72 72 LYS LYS A . n A 1 31 THR 31 73 73 THR THR A . n A 1 32 LEU 32 74 74 LEU LEU A . n A 1 33 TRP 33 75 75 TRP TRP A . n A 1 34 LYS 34 76 76 LYS LYS A . n A 1 35 HIS 35 77 77 HIS HIS A . n A 1 36 GLN 36 78 78 GLN GLN A . n A 1 37 PHE 37 79 79 PHE PHE A . n A 1 38 ALA 38 80 80 ALA ALA A . n A 1 39 TRP 39 81 81 TRP TRP A . n A 1 40 PRO 40 82 82 PRO PRO A . n A 1 41 PHE 41 83 83 PHE PHE A . n A 1 42 GLN 42 84 84 GLN GLN A . n A 1 43 GLN 43 85 85 GLN GLN A . n A 1 44 PRO 44 86 86 PRO PRO A . n A 1 45 VAL 45 87 87 VAL VAL A . n A 1 46 ASP 46 88 88 ASP ASP A . n A 1 47 ALA 47 89 89 ALA ALA A . n A 1 48 VAL 48 90 90 VAL VAL A . n A 1 49 LYS 49 91 91 LYS LYS A . n A 1 50 LEU 50 92 92 LEU LEU A . n A 1 51 ASN 51 93 93 ASN ASN A . n A 1 52 LEU 52 94 94 LEU LEU A . n A 1 53 PRO 53 95 95 PRO PRO A . n A 1 54 ASP 54 96 96 ASP ASP A . n A 1 55 TYR 55 97 97 TYR TYR A . n A 1 56 TYR 56 98 98 TYR TYR A . n A 1 57 LYS 57 99 99 LYS LYS A . n A 1 58 ILE 58 100 100 ILE ILE A . n A 1 59 ILE 59 101 101 ILE ILE A . n A 1 60 LYS 60 102 102 LYS LYS A . n A 1 61 THR 61 103 103 THR THR A . n A 1 62 PRO 62 104 104 PRO PRO A . n A 1 63 MET 63 105 105 MET MET A . n A 1 64 ASP 64 106 106 ASP ASP A . n A 1 65 MET 65 107 107 MET MET A . n A 1 66 GLY 66 108 108 GLY GLY A . n A 1 67 THR 67 109 109 THR THR A . n A 1 68 ILE 68 110 110 ILE ILE A . n A 1 69 LYS 69 111 111 LYS LYS A . n A 1 70 LYS 70 112 112 LYS LYS A . n A 1 71 ARG 71 113 113 ARG ARG A . n A 1 72 LEU 72 114 114 LEU LEU A . n A 1 73 GLU 73 115 115 GLU GLU A . n A 1 74 ASN 74 116 116 ASN ASN A . n A 1 75 ASN 75 117 117 ASN ASN A . n A 1 76 TYR 76 118 118 TYR TYR A . n A 1 77 TYR 77 119 119 TYR TYR A . n A 1 78 TRP 78 120 120 TRP TRP A . n A 1 79 ASN 79 121 121 ASN ASN A . n A 1 80 ALA 80 122 122 ALA ALA A . n A 1 81 GLN 81 123 123 GLN GLN A . n A 1 82 GLU 82 124 124 GLU GLU A . n A 1 83 CYS 83 125 125 CYS CYS A . n A 1 84 ILE 84 126 126 ILE ILE A . n A 1 85 GLN 85 127 127 GLN GLN A . n A 1 86 ASP 86 128 128 ASP ASP A . n A 1 87 PHE 87 129 129 PHE PHE A . n A 1 88 ASN 88 130 130 ASN ASN A . n A 1 89 THR 89 131 131 THR THR A . n A 1 90 MET 90 132 132 MET MET A . n A 1 91 PHE 91 133 133 PHE PHE A . n A 1 92 THR 92 134 134 THR THR A . n A 1 93 ASN 93 135 135 ASN ASN A . n A 1 94 CYS 94 136 136 CYS CYS A . n A 1 95 TYR 95 137 137 TYR TYR A . n A 1 96 ILE 96 138 138 ILE ILE A . n A 1 97 TYR 97 139 139 TYR TYR A . n A 1 98 ASN 98 140 140 ASN ASN A . n A 1 99 LYS 99 141 141 LYS LYS A . n A 1 100 PRO 100 142 142 PRO PRO A . n A 1 101 GLY 101 143 143 GLY GLY A . n A 1 102 ASP 102 144 144 ASP ASP A . n A 1 103 ASP 103 145 145 ASP ASP A . n A 1 104 ILE 104 146 146 ILE ILE A . n A 1 105 VAL 105 147 147 VAL VAL A . n A 1 106 LEU 106 148 148 LEU LEU A . n A 1 107 MET 107 149 149 MET MET A . n A 1 108 ALA 108 150 150 ALA ALA A . n A 1 109 GLU 109 151 151 GLU GLU A . n A 1 110 ALA 110 152 152 ALA ALA A . n A 1 111 LEU 111 153 153 LEU LEU A . n A 1 112 GLU 112 154 154 GLU GLU A . n A 1 113 LYS 113 155 155 LYS LYS A . n A 1 114 LEU 114 156 156 LEU LEU A . n A 1 115 PHE 115 157 157 PHE PHE A . n A 1 116 LEU 116 158 158 LEU LEU A . n A 1 117 GLN 117 159 159 GLN GLN A . n A 1 118 LYS 118 160 160 LYS LYS A . n A 1 119 ILE 119 161 161 ILE ILE A . n A 1 120 ASN 120 162 162 ASN ASN A . n A 1 121 GLU 121 163 163 GLU GLU A . n A 1 122 LEU 122 164 164 LEU LEU A . n A 1 123 PRO 123 165 165 PRO PRO A . n A 1 124 THR 124 166 166 THR THR A . n A 1 125 GLU 125 167 ? ? ? A . n A 1 126 GLU 126 168 ? ? ? A . n # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # _pdbx_struct_special_symmetry.id 1 _pdbx_struct_special_symmetry.PDB_model_num 1 _pdbx_struct_special_symmetry.auth_asym_id A _pdbx_struct_special_symmetry.auth_comp_id NA _pdbx_struct_special_symmetry.auth_seq_id 201 _pdbx_struct_special_symmetry.PDB_ins_code ? _pdbx_struct_special_symmetry.label_asym_id B _pdbx_struct_special_symmetry.label_comp_id NA _pdbx_struct_special_symmetry.label_seq_id . # loop_ _pdbx_struct_conn_angle.id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_alt_id _pdbx_struct_conn_angle.ptnr1_label_asym_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr1_auth_atom_id _pdbx_struct_conn_angle.ptnr1_auth_asym_id _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_PDB_ins_code _pdbx_struct_conn_angle.ptnr1_symmetry _pdbx_struct_conn_angle.ptnr2_label_atom_id _pdbx_struct_conn_angle.ptnr2_label_alt_id _pdbx_struct_conn_angle.ptnr2_label_asym_id _pdbx_struct_conn_angle.ptnr2_label_comp_id _pdbx_struct_conn_angle.ptnr2_label_seq_id _pdbx_struct_conn_angle.ptnr2_auth_atom_id _pdbx_struct_conn_angle.ptnr2_auth_asym_id _pdbx_struct_conn_angle.ptnr2_auth_comp_id _pdbx_struct_conn_angle.ptnr2_auth_seq_id _pdbx_struct_conn_angle.ptnr2_PDB_ins_code _pdbx_struct_conn_angle.ptnr2_symmetry _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_alt_id _pdbx_struct_conn_angle.ptnr3_label_asym_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.ptnr3_auth_atom_id _pdbx_struct_conn_angle.ptnr3_auth_asym_id _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_PDB_ins_code _pdbx_struct_conn_angle.ptnr3_symmetry _pdbx_struct_conn_angle.value _pdbx_struct_conn_angle.value_esd 1 O ? E HOH . ? A HOH 302 ? 1_555 NA ? B NA . ? A NA 201 ? 1_555 O6 ? D 2SJ . ? A 2SJ 203 ? 1_555 101.8 ? 2 O ? E HOH . ? A HOH 302 ? 1_555 NA ? B NA . ? A NA 201 ? 1_555 O5 ? D 2SJ . ? A 2SJ 203 ? 1_555 83.9 ? 3 O6 ? D 2SJ . ? A 2SJ 203 ? 1_555 NA ? B NA . ? A NA 201 ? 1_555 O5 ? D 2SJ . ? A 2SJ 203 ? 1_555 68.5 ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2014-01-15 2 'Structure model' 1 1 2014-01-29 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Non-polymer description' 2 2 'Structure model' 'Structure summary' # loop_ _pdbx_refine_tls.pdbx_refine_id _pdbx_refine_tls.id _pdbx_refine_tls.details _pdbx_refine_tls.method _pdbx_refine_tls.origin_x _pdbx_refine_tls.origin_y _pdbx_refine_tls.origin_z _pdbx_refine_tls.T[1][1] _pdbx_refine_tls.T[2][2] _pdbx_refine_tls.T[3][3] _pdbx_refine_tls.T[1][2] _pdbx_refine_tls.T[1][3] _pdbx_refine_tls.T[2][3] _pdbx_refine_tls.L[1][1] _pdbx_refine_tls.L[2][2] _pdbx_refine_tls.L[3][3] _pdbx_refine_tls.L[1][2] _pdbx_refine_tls.L[1][3] _pdbx_refine_tls.L[2][3] _pdbx_refine_tls.S[1][1] _pdbx_refine_tls.S[2][2] _pdbx_refine_tls.S[3][3] _pdbx_refine_tls.S[1][2] _pdbx_refine_tls.S[1][3] _pdbx_refine_tls.S[2][3] _pdbx_refine_tls.S[2][1] _pdbx_refine_tls.S[3][1] _pdbx_refine_tls.S[3][2] 'X-RAY DIFFRACTION' 1 ? refined -1.2899 34.5894 13.0498 0.1387 0.1506 0.4575 -0.0299 0.1180 0.1638 9.2414 2.7086 4.3156 2.9524 -1.0332 2.3714 -0.4560 0.0815 0.3744 0.1679 -0.6886 0.1226 -0.0989 0.0303 0.0771 'X-RAY DIFFRACTION' 2 ? refined 12.6497 25.1561 24.4974 0.2613 0.1969 0.2102 0.0344 0.0181 0.0332 12.1848 3.3814 1.3029 -5.8618 2.0913 -1.7338 0.2451 -0.0644 -0.1808 0.0421 -0.1770 0.1949 -0.1169 0.0472 0.0617 'X-RAY DIFFRACTION' 3 ? refined 15.7150 44.0036 17.8180 0.0697 0.0851 0.0910 0.0065 -0.0390 0.0095 2.3726 4.6850 1.7008 -0.0212 0.4728 -0.1405 -0.2547 -0.0023 0.2569 -0.2390 0.0913 -0.4804 0.3060 -0.1242 0.0833 'X-RAY DIFFRACTION' 4 ? refined -0.6848 40.6476 3.7154 0.1577 0.1418 0.1560 -0.0809 -0.0397 0.0440 8.7127 6.1238 4.1462 -1.9348 0.9357 -1.3856 0.0073 0.2594 -0.2667 0.4114 -0.1173 0.9289 -0.3880 0.4570 -0.4518 'X-RAY DIFFRACTION' 5 ? refined 12.3003 33.6094 19.2697 0.0777 0.0588 0.0279 0.0221 0.0167 0.0083 5.3398 3.6245 1.2539 -1.4037 0.9840 -0.1885 -0.0116 0.0845 -0.0729 -0.2605 -0.2768 0.2573 0.2027 0.1865 0.1077 'X-RAY DIFFRACTION' 6 ? refined 19.0591 31.4525 13.1318 0.1323 0.0750 0.1155 0.0039 0.0391 0.0306 5.7205 12.4304 18.7816 -8.3780 4.5426 -5.1002 0.2635 -0.0583 -0.2052 0.0637 -0.1082 0.1327 -0.2949 0.6607 0.1625 'X-RAY DIFFRACTION' 7 ? refined 17.4703 43.4368 6.8064 0.0771 0.0576 0.0706 -0.0010 0.0332 -0.0049 2.6069 2.3642 2.5468 -0.2191 0.7302 -1.2049 -0.0479 -0.0921 0.1401 0.0033 0.1549 -0.3412 -0.0580 0.0681 0.2583 # loop_ _pdbx_refine_tls_group.pdbx_refine_id _pdbx_refine_tls_group.id _pdbx_refine_tls_group.refine_tls_id _pdbx_refine_tls_group.beg_auth_asym_id _pdbx_refine_tls_group.beg_auth_seq_id _pdbx_refine_tls_group.end_auth_asym_id _pdbx_refine_tls_group.end_auth_seq_id _pdbx_refine_tls_group.selection_details _pdbx_refine_tls_group.beg_label_asym_id _pdbx_refine_tls_group.beg_label_seq_id _pdbx_refine_tls_group.end_label_asym_id _pdbx_refine_tls_group.end_label_seq_id _pdbx_refine_tls_group.selection 'X-RAY DIFFRACTION' 1 1 A 43 A 49 ? . . . . ? 'X-RAY DIFFRACTION' 2 2 A 50 A 59 ? . . . . ? 'X-RAY DIFFRACTION' 3 3 A 60 A 88 ? . . . . ? 'X-RAY DIFFRACTION' 4 4 A 89 A 103 ? . . . . ? 'X-RAY DIFFRACTION' 5 5 A 104 A 121 ? . . . . ? 'X-RAY DIFFRACTION' 6 6 A 122 A 127 ? . . . . ? 'X-RAY DIFFRACTION' 7 7 A 128 A 166 ? . . . . ? # _pdbx_phasing_MR.entry_id 4LYS _pdbx_phasing_MR.method_rotation ? _pdbx_phasing_MR.method_translation ? _pdbx_phasing_MR.model_details ? _pdbx_phasing_MR.R_factor 0.457 _pdbx_phasing_MR.R_rigid_body ? _pdbx_phasing_MR.correlation_coeff_Fo_to_Fc 0.445 _pdbx_phasing_MR.correlation_coeff_Io_to_Ic 0.448 _pdbx_phasing_MR.d_res_high_rotation 3.500 _pdbx_phasing_MR.d_res_low_rotation 10.000 _pdbx_phasing_MR.d_res_high_translation 3.500 _pdbx_phasing_MR.d_res_low_translation 10.000 _pdbx_phasing_MR.packing ? _pdbx_phasing_MR.reflns_percent_rotation ? _pdbx_phasing_MR.reflns_percent_translation ? _pdbx_phasing_MR.sigma_F_rotation ? _pdbx_phasing_MR.sigma_F_translation ? _pdbx_phasing_MR.sigma_I_rotation ? _pdbx_phasing_MR.sigma_I_translation ? # _phasing.method MR # loop_ _software.pdbx_ordinal _software.name _software.version _software.date _software.type _software.contact_author _software.contact_author_email _software.classification _software.location _software.language _software.citation_id 1 SCALA 3.3.20 2011/05/18 other 'Phil R. Evans' pre@mrc-lmb.cam.ac.uk 'data scaling' http://www.ccp4.ac.uk/dist/html/scala.html Fortran_77 ? 2 AMoRE . ? program 'Jorge Navaza' ccp4@ccp4.ac.uk phasing http://www.ccp4.ac.uk/ Fortran_77 ? 3 REFMAC . ? program 'Garib N. Murshudov' garib@ysbl.york.ac.uk refinement http://www.ccp4.ac.uk/dist/html/refmac5.html Fortran_77 ? 4 PDB_EXTRACT 3.11 'April 22, 2011' package PDB deposit@deposit.rcsb.org 'data extraction' http://sw-tools.pdb.org/apps/PDB_EXTRACT/ C++ ? 5 XSCALE . ? ? ? ? 'data scaling' ? ? ? # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A GLU 167 ? A GLU 125 2 1 Y 1 A GLU 168 ? A GLU 126 # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 'SODIUM ION' NA 3 'N-[(7S)-10-hydroxy-1,2,3-trimethoxy-9-oxo-5,6,7,9-tetrahydrobenzo[a]heptalen-7-yl]acetamide' 2SJ 4 water HOH # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 NA 1 201 1 NA NA A . C 2 NA 1 202 2 NA NA A . D 3 2SJ 1 203 1 2SJ L01 A . E 4 HOH 1 301 1 HOH HOH A . E 4 HOH 2 302 2 HOH HOH A . E 4 HOH 3 303 3 HOH HOH A . E 4 HOH 4 304 4 HOH HOH A . E 4 HOH 5 305 5 HOH HOH A . E 4 HOH 6 306 6 HOH HOH A . E 4 HOH 7 307 7 HOH HOH A . E 4 HOH 8 308 8 HOH HOH A . E 4 HOH 9 309 9 HOH HOH A . E 4 HOH 10 310 10 HOH HOH A . E 4 HOH 11 311 11 HOH HOH A . E 4 HOH 12 312 12 HOH HOH A . E 4 HOH 13 313 13 HOH HOH A . E 4 HOH 14 314 14 HOH HOH A . E 4 HOH 15 315 15 HOH HOH A . E 4 HOH 16 316 16 HOH HOH A . E 4 HOH 17 317 17 HOH HOH A . E 4 HOH 18 318 18 HOH HOH A . E 4 HOH 19 319 19 HOH HOH A . E 4 HOH 20 320 20 HOH HOH A . E 4 HOH 21 321 21 HOH HOH A . E 4 HOH 22 322 22 HOH HOH A . E 4 HOH 23 323 23 HOH HOH A . E 4 HOH 24 324 24 HOH HOH A . E 4 HOH 25 325 25 HOH HOH A . E 4 HOH 26 326 26 HOH HOH A . E 4 HOH 27 327 27 HOH HOH A . E 4 HOH 28 328 28 HOH HOH A . E 4 HOH 29 329 29 HOH HOH A . E 4 HOH 30 330 30 HOH HOH A . E 4 HOH 31 331 31 HOH HOH A . E 4 HOH 32 332 32 HOH HOH A . E 4 HOH 33 333 33 HOH HOH A . E 4 HOH 34 334 34 HOH HOH A . E 4 HOH 35 335 35 HOH HOH A . E 4 HOH 36 336 36 HOH HOH A . E 4 HOH 37 337 37 HOH HOH A . E 4 HOH 38 338 38 HOH HOH A . E 4 HOH 39 339 39 HOH HOH A . E 4 HOH 40 340 40 HOH HOH A . E 4 HOH 41 341 41 HOH HOH A . E 4 HOH 42 342 42 HOH HOH A . E 4 HOH 43 343 43 HOH HOH A . E 4 HOH 44 344 44 HOH HOH A . E 4 HOH 45 345 45 HOH HOH A . E 4 HOH 46 346 46 HOH HOH A . E 4 HOH 47 347 47 HOH HOH A . E 4 HOH 48 348 48 HOH HOH A . E 4 HOH 49 349 49 HOH HOH A . E 4 HOH 50 350 50 HOH HOH A . E 4 HOH 51 351 51 HOH HOH A . E 4 HOH 52 352 52 HOH HOH A . E 4 HOH 53 353 53 HOH HOH A . E 4 HOH 54 354 54 HOH HOH A . E 4 HOH 55 355 55 HOH HOH A . E 4 HOH 56 356 56 HOH HOH A . E 4 HOH 57 357 57 HOH HOH A . E 4 HOH 58 358 58 HOH HOH A . E 4 HOH 59 359 59 HOH HOH A . E 4 HOH 60 360 60 HOH HOH A . E 4 HOH 61 361 61 HOH HOH A . E 4 HOH 62 362 62 HOH HOH A . E 4 HOH 63 363 63 HOH HOH A . E 4 HOH 64 364 64 HOH HOH A . E 4 HOH 65 365 65 HOH HOH A . E 4 HOH 66 366 66 HOH HOH A . E 4 HOH 67 367 67 HOH HOH A . E 4 HOH 68 368 68 HOH HOH A . E 4 HOH 69 369 69 HOH HOH A . E 4 HOH 70 370 71 HOH HOH A . E 4 HOH 71 371 72 HOH HOH A . E 4 HOH 72 372 73 HOH HOH A . E 4 HOH 73 373 74 HOH HOH A . E 4 HOH 74 374 75 HOH HOH A . E 4 HOH 75 375 76 HOH HOH A . E 4 HOH 76 376 77 HOH HOH A . E 4 HOH 77 377 78 HOH HOH A . E 4 HOH 78 378 79 HOH HOH A . E 4 HOH 79 379 80 HOH HOH A . E 4 HOH 80 380 81 HOH HOH A . E 4 HOH 81 381 82 HOH HOH A . E 4 HOH 82 382 83 HOH HOH A . E 4 HOH 83 383 84 HOH HOH A . E 4 HOH 84 384 85 HOH HOH A . E 4 HOH 85 385 86 HOH HOH A . E 4 HOH 86 386 87 HOH HOH A . E 4 HOH 87 387 88 HOH HOH A . E 4 HOH 88 388 89 HOH HOH A . E 4 HOH 89 389 90 HOH HOH A . E 4 HOH 90 390 91 HOH HOH A . E 4 HOH 91 391 92 HOH HOH A . E 4 HOH 92 392 93 HOH HOH A . E 4 HOH 93 393 94 HOH HOH A . E 4 HOH 94 394 95 HOH HOH A . E 4 HOH 95 395 96 HOH HOH A . E 4 HOH 96 396 97 HOH HOH A . E 4 HOH 97 397 98 HOH HOH A . E 4 HOH 98 398 99 HOH HOH A . E 4 HOH 99 399 100 HOH HOH A . E 4 HOH 100 400 101 HOH HOH A . E 4 HOH 101 401 102 HOH HOH A . E 4 HOH 102 402 103 HOH HOH A . E 4 HOH 103 403 104 HOH HOH A . E 4 HOH 104 404 105 HOH HOH A . E 4 HOH 105 405 106 HOH HOH A . E 4 HOH 106 406 107 HOH HOH A . E 4 HOH 107 407 108 HOH HOH A . E 4 HOH 108 408 109 HOH HOH A . E 4 HOH 109 409 110 HOH HOH A . E 4 HOH 110 410 111 HOH HOH A . E 4 HOH 111 411 112 HOH HOH A . E 4 HOH 112 412 113 HOH HOH A . E 4 HOH 113 413 114 HOH HOH A . E 4 HOH 114 414 115 HOH HOH A . E 4 HOH 115 415 116 HOH HOH A . E 4 HOH 116 416 117 HOH HOH A . E 4 HOH 117 417 118 HOH HOH A . E 4 HOH 118 418 119 HOH HOH A . E 4 HOH 119 419 120 HOH HOH A . E 4 HOH 120 420 121 HOH HOH A . E 4 HOH 121 421 122 HOH HOH A . #