HEADER SIGNALING PROTEIN 01-AUG-13 4M0N TITLE CRYSTAL STRUCTURE OF A PUTATIVE ANTI-SIGMA FACTOR (BDI_1681) FROM TITLE 2 PARABACTEROIDES DISTASONIS ATCC 8503 AT 1.65 A RESOLUTION COMPND MOL_ID: 1; COMPND 2 MOLECULE: CONSERVED HYPOTHETICAL PROTEIN, PUTATIVE ANTI-SIGMA FACTOR; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: UNP RESIDUES 107-337; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PARABACTEROIDES DISTASONIS; SOURCE 3 ORGANISM_TAXID: 435591; SOURCE 4 STRAIN: ATCC 8503 / DSM 20701 / NCTC 11152; SOURCE 5 GENE: BDI_1681; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: PB1; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: SPEEDET KEYWDS FECR PROTEIN, PF04773 FAMILY, STRUCTURAL GENOMICS, JOINT CENTER FOR KEYWDS 2 STRUCTURAL GENOMICS, JCSG, PROTEIN STRUCTURE INITIATIVE, PSI- KEYWDS 3 BIOLOGY, SIGNALING PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR JOINT CENTER FOR STRUCTURAL GENOMICS (JCSG) REVDAT 5 20-SEP-23 4M0N 1 REMARK REVDAT 4 01-FEB-23 4M0N 1 REMARK SEQADV SHEET LINK REVDAT 3 15-NOV-17 4M0N 1 REMARK REVDAT 2 24-DEC-14 4M0N 1 TITLE REVDAT 1 16-OCT-13 4M0N 0 JRNL AUTH JOINT CENTER FOR STRUCTURAL GENOMICS (JCSG) JRNL TITL CRYSTAL STRUCTURE OF A CONSERVED HYPOTHETICAL PROTEIN, JRNL TITL 2 PUTATIVE ANTI-SIGMA FACTOR (BDI_1681) FROM PARABACTEROIDES JRNL TITL 3 DISTASONIS ATCC 8503 AT 1.65 A RESOLUTION JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.65 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.7.0032 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.65 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 29.29 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.2 REMARK 3 NUMBER OF REFLECTIONS : 25354 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.184 REMARK 3 R VALUE (WORKING SET) : 0.182 REMARK 3 FREE R VALUE : 0.219 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1285 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.65 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.70 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1736 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.73 REMARK 3 BIN R VALUE (WORKING SET) : 0.2490 REMARK 3 BIN FREE R VALUE SET COUNT : 88 REMARK 3 BIN FREE R VALUE : 0.2890 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1692 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 5 REMARK 3 SOLVENT ATOMS : 100 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 20.70 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 28.27 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.26000 REMARK 3 B22 (A**2) : 1.26000 REMARK 3 B33 (A**2) : -1.00000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.102 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.102 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.065 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 3.725 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.960 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.945 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 1768 ; 0.010 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 1701 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 2408 ; 1.419 ; 1.958 REMARK 3 BOND ANGLES OTHERS (DEGREES): 3914 ; 0.695 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 226 ; 6.390 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 89 ;36.179 ;24.831 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 317 ;11.809 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 12 ;15.984 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 278 ; 0.085 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2025 ; 0.005 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 401 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 863 ; 2.031 ; 2.910 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 862 ; 2.031 ; 2.905 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1081 ; 2.962 ; 5.431 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 125 A 336 REMARK 3 ORIGIN FOR THE GROUP (A): -6.8806 -14.8952 13.4155 REMARK 3 T TENSOR REMARK 3 T11: 0.0411 T22: 0.0863 REMARK 3 T33: 0.0591 T12: -0.0126 REMARK 3 T13: -0.0001 T23: 0.0041 REMARK 3 L TENSOR REMARK 3 L11: 1.2062 L22: 0.8298 REMARK 3 L33: 1.3247 L12: 0.0643 REMARK 3 L13: -0.1380 L23: -0.2979 REMARK 3 S TENSOR REMARK 3 S11: 0.0038 S12: 0.0044 S13: 0.1093 REMARK 3 S21: -0.0194 S22: 0.0022 S23: -0.0187 REMARK 3 S31: -0.0985 S32: 0.0072 S33: -0.0060 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: 1.HYDROGENS HAVE BEEN ADDED IN THE REMARK 3 RIDING POSITIONS. 2.ATOM RECORD CONTAINS SUM OF TLS AND RESIDUAL REMARK 3 B FACTORS. ANISOU RECORD CONTAINS SUM OF TLS AND RESIDUAL U REMARK 3 FACTORS. 3.WATERS WERE EXCLUDED FROM AUTOMATIC TLS ASSIGNMENT. REMARK 3 4.1,2-ETHANEDIOL (EDO) FROM THE CRYOPROTECTANT SOLUTION AND REMARK 3 MAGNESIUM (MG) FROM THE CRYSTALLIZATION HAVE BEEN MODELED INTO REMARK 3 THE STRUCTURE. REMARK 4 REMARK 4 4M0N COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 07-AUG-13. REMARK 100 THE DEPOSITION ID IS D_1000081316. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 17-OCT-12 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ALS REMARK 200 BEAMLINE : 8.2.2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.979169 REMARK 200 MONOCHROMATOR : DOUBLE CRYSTAL SI(111) REMARK 200 OPTICS : KOHZU: DOUBLE CRYSTAL SI(111) REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE MARCH 15, 2012 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 25388 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.650 REMARK 200 RESOLUTION RANGE LOW (A) : 29.285 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.4 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : 0.04800 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 17.4200 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.65 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.71 REMARK 200 COMPLETENESS FOR SHELL (%) : 93.8 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.70000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.000 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER 2.3.0 REMARK 200 STARTING MODEL: 4M0H REMARK 200 REMARK 200 REMARK: THE STRUCTURE WAS DETERMINED BY MOLECULAR REPLACEMENT REMARK 200 USING A REFINED MODEL OBTAINED BY THREE WAVELENGTH SE-MAD REMARK 200 PHASING FROM A DIFFERENT CRYSTAL AT LOWER RESOLUTION REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 37.38 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 1.96 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.200M MAGNESIUM FORMATE, 20.00% REMARK 280 POLYETHYLENE GLYCOL 3350, NANODROP, VAPOR DIFFUSION, SITTING REMARK 280 DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 2 2 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -X,Y,-Z+1/2 REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 57.51600 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 57.51600 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 15.69300 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 57.62100 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 15.69300 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 57.62100 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 57.51600 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 15.69300 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 57.62100 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 57.51600 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 15.69300 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 57.62100 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 106 REMARK 465 LYS A 107 REMARK 465 LEU A 108 REMARK 465 TYR A 109 REMARK 465 LEU A 110 REMARK 465 ASN A 111 REMARK 465 HIS A 112 REMARK 465 SER A 113 REMARK 465 ALA A 114 REMARK 465 LYS A 115 REMARK 465 GLN A 116 REMARK 465 HIS A 117 REMARK 465 THR A 118 REMARK 465 SER A 119 REMARK 465 ALA A 120 REMARK 465 SER A 121 REMARK 465 ASP A 122 REMARK 465 HIS A 123 REMARK 465 LEU A 124 REMARK 465 HIS A 337 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 325 CG CD CE NZ REMARK 470 GLU A 327 CG CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS A 183 89.95 -150.92 REMARK 500 ALA A 205 54.80 -148.03 REMARK 500 GLU A 327 98.62 -55.15 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 401 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLY A 151 O REMARK 620 2 HOH A 555 O 97.6 REMARK 620 3 HOH A 556 O 86.4 93.0 REMARK 620 4 HOH A 557 O 89.4 172.3 90.8 REMARK 620 5 HOH A 558 O 92.9 88.5 178.4 87.8 REMARK 620 6 HOH A 559 O 175.2 87.1 92.5 86.0 88.1 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 402 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: JCSG-424925 RELATED DB: TARGETTRACK REMARK 999 REMARK 999 SEQUENCE REMARK 999 THIS CONSTRUCT (RESIDUES 107-327) WAS EXPRESSED WITH A PURIFICATION REMARK 999 TAG MGSDKIHHHHHHENLYFQG. THE TAG WAS REMOVED WITH TEV PROTEASE REMARK 999 LEAVING ONLY A GLYCINE (0) FOLLOWED BY THE TARGET SEQUENCE. A THR REMARK 999 AT POSITION 199 IN THE SEQUENCE HAS BEEN MUTATED TO ALANINE. DBREF 4M0N A 107 337 UNP A6LCL9 A6LCL9_PARD8 107 337 SEQADV 4M0N GLY A 106 UNP A6LCL9 EXPRESSION TAG SEQADV 4M0N ALA A 199 UNP A6LCL9 THR 199 ENGINEERED MUTATION SEQRES 1 A 232 GLY LYS LEU TYR LEU ASN HIS SER ALA LYS GLN HIS THR SEQRES 2 A 232 SER ALA SER ASP HIS LEU LEU THR GLU ILE SER VAL ASN SEQRES 3 A 232 HIS GLY GLU HIS LYS GLN VAL THR LEU PRO ASP GLY THR SEQRES 4 A 232 VAL VAL HIS LEU ASN ALA GLY THR VAL MET ARG TYR PRO SEQRES 5 A 232 THR GLU PHE THR SER ASP ILE ARG LEU VAL GLU MET GLU SEQRES 6 A 232 GLY GLU ALA PHE PHE ASN VAL MET ARG ASP GLU GLY LYS SEQRES 7 A 232 PRO PHE ILE VAL ARG THR ARG GLN ALA ASP VAL LYS VAL SEQRES 8 A 232 LEU GLY ALA SER PHE ASN VAL LYS ALA TYR GLN GLU ASP SEQRES 9 A 232 GLU LEU MET ALA VAL SER VAL ARG THR GLY LYS VAL GLU SEQRES 10 A 232 VAL ASP MET PRO GLU SER VAL MET ARG LEU LEU PRO ASN SEQRES 11 A 232 GLU GLN ILE ILE VAL ASN ASN THR ASN GLY GLU ILE LEU SEQRES 12 A 232 LYS LYS ASN GLU ASP ALA GLN LYS VAL THR ALA TRP LEU SEQRES 13 A 232 GLN GLY GLY LEU TYR PHE ASN ARG THR PRO ILE SER SER SEQRES 14 A 232 VAL ILE HIS ASP LEU GLU ARG MET TYR ASN GLN GLU ILE SEQRES 15 A 232 VAL LEU ASP PRO ASN VAL VAL PHE ASP ASP TYR ILE TYR SEQRES 16 A 232 GLY GLU HIS ASP ASN LYS SER LEU GLU ALA VAL LEU ASN SEQRES 17 A 232 ALA ILE GLN TYR SER THR GLY ILE ARG TYR ARG LYS GLU SEQRES 18 A 232 GLU SER ARG ILE VAL LEU TYR LYS THR SER HIS HET MG A 401 1 HET EDO A 402 4 HETNAM MG MAGNESIUM ION HETNAM EDO 1,2-ETHANEDIOL HETSYN EDO ETHYLENE GLYCOL FORMUL 2 MG MG 2+ FORMUL 3 EDO C2 H6 O2 FORMUL 4 HOH *100(H2 O) HELIX 1 1 ASP A 253 THR A 258 1 6 HELIX 2 2 ALA A 259 GLN A 262 5 4 HELIX 3 3 ILE A 272 ASN A 284 1 13 HELIX 4 4 SER A 307 GLY A 320 1 14 SHEET 1 A 7 THR A 126 SER A 129 0 SHEET 2 A 7 VAL A 153 TYR A 156 -1 O TYR A 156 N THR A 126 SHEET 3 A 7 ARG A 165 VAL A 177 -1 O GLU A 170 N VAL A 153 SHEET 4 A 7 PHE A 185 ARG A 188 1 O ARG A 188 N VAL A 167 SHEET 5 A 7 ASP A 193 VAL A 196 -1 O VAL A 196 N PHE A 185 SHEET 6 A 7 VAL A 221 MET A 225 -1 O ASP A 224 N ASP A 193 SHEET 7 A 7 SER A 228 LEU A 232 -1 O SER A 228 N MET A 225 SHEET 1 B 6 LYS A 136 THR A 139 0 SHEET 2 B 6 VAL A 145 LEU A 148 -1 O LEU A 148 N LYS A 136 SHEET 3 B 6 ARG A 165 VAL A 177 -1 O PHE A 174 N HIS A 147 SHEET 4 B 6 LEU A 211 GLY A 219 -1 O ALA A 213 N LYS A 204 SHEET 5 B 6 GLU A 236 ASN A 241 -1 O VAL A 240 N MET A 212 SHEET 6 B 6 ILE A 247 ASN A 251 -1 O LEU A 248 N ILE A 239 SHEET 1 C 2 GLY A 264 PRO A 271 0 SHEET 2 C 2 TYR A 298 ASP A 304 -1 O ILE A 299 N THR A 270 SHEET 1 D 3 ILE A 287 LEU A 289 0 SHEET 2 D 3 ARG A 329 TYR A 333 1 O LEU A 332 N VAL A 288 SHEET 3 D 3 ARG A 322 GLU A 326 -1 N GLU A 326 O ARG A 329 LINK O GLY A 151 MG MG A 401 1555 1555 2.07 LINK MG MG A 401 O HOH A 555 1555 1555 2.04 LINK MG MG A 401 O HOH A 556 1555 1555 2.01 LINK MG MG A 401 O HOH A 557 1555 1555 2.16 LINK MG MG A 401 O HOH A 558 1555 1555 2.04 LINK MG MG A 401 O HOH A 559 1555 1555 2.18 SITE 1 AC1 6 GLY A 151 HOH A 555 HOH A 556 HOH A 557 SITE 2 AC1 6 HOH A 558 HOH A 559 SITE 1 AC2 4 ILE A 239 ASN A 241 GLU A 246 HOH A 522 CRYST1 31.386 115.242 115.032 90.00 90.00 90.00 C 2 2 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.031861 0.000000 0.000000 0.00000 SCALE2 0.000000 0.008677 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008693 0.00000