HEADER HYDROLASE 04-AUG-13 4M1Z TITLE CRYSTAL STRUCTURE OF MYCP1 WITH THE N-TERMINAL PROPEPTIDE REMOVED COMPND MOL_ID: 1; COMPND 2 MOLECULE: MEMBRANE-ANCHORED MYCOSIN MYCP1; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: UNP RESIDUES 63-422; COMPND 5 SYNONYM: PEPTIDASE S8 AND S53, SUBTILISIN, KEXIN, SEDOLISIN; COMPND 6 EC: 3.4.21.62; COMPND 7 ENGINEERED: YES; COMPND 8 MOL_ID: 2; COMPND 9 MOLECULE: MEMBRANE-ANCHORED MYCOSIN MYCP1; COMPND 10 CHAIN: C, D; COMPND 11 SYNONYM: PEPTIDASE S8 AND S53, SUBTILISIN, KEXIN, SEDOLISIN; COMPND 12 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MYCOBACTERIUM SMEGMATIS; SOURCE 3 ORGANISM_TAXID: 246196; SOURCE 4 STRAIN: MC2 155; SOURCE 5 GENE: MSMEG_0083, MSMEI_0081; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET22B; SOURCE 11 MOL_ID: 2; SOURCE 12 ORGANISM_SCIENTIFIC: MYCOBACTERIUM SMEGMATIS; SOURCE 13 ORGANISM_TAXID: 246196; SOURCE 14 STRAIN: MC2 155; SOURCE 15 GENE: MSMEG_0083, MSMEI_0081; SOURCE 16 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 17 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 18 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 19 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 20 EXPRESSION_SYSTEM_PLASMID: PET22B KEYWDS SUBTILISIN-LIKE, PROPEPTIDE-REMOVED, SERINE PROTEASE, ESX-1 SYSTEM, KEYWDS 2 MEMBRANE-ANCHORED, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR D.M.SUN,Y.HE,C.L.WANG,J.Y.ZANG,C.L.TIAN REVDAT 2 08-NOV-23 4M1Z 1 SEQADV REVDAT 1 12-FEB-14 4M1Z 0 JRNL AUTH D.M.SUN,Q.LIU,Y.HE,C.L.WANG,F.M.WU,C.L.TIAN,J.Y.ZANG JRNL TITL THE PUTATIVE PROPEPTIDE OF MYCP1 IN MYCOBACTERIAL TYPE VII JRNL TITL 2 SECRETION SYSTEM DOES NOT INHIBIT PROTEASE ACTIVITY BUT JRNL TITL 3 IMPROVES PROTEIN STABILITY. JRNL REF PROTEIN CELL V. 4 921 2013 JRNL REFN ISSN 1674-800X JRNL PMID 24248472 JRNL DOI 10.1007/S13238-013-3089-7 REMARK 2 REMARK 2 RESOLUTION. 2.25 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.6.0117 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.25 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 37.28 REMARK 3 DATA CUTOFF (SIGMA(F)) : 2.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 91.5 REMARK 3 NUMBER OF REFLECTIONS : 28885 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.169 REMARK 3 R VALUE (WORKING SET) : 0.166 REMARK 3 FREE R VALUE : 0.222 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1519 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.25 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.31 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1240 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 55.84 REMARK 3 BIN R VALUE (WORKING SET) : 0.1720 REMARK 3 BIN FREE R VALUE SET COUNT : 69 REMARK 3 BIN FREE R VALUE : 0.2440 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4742 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 291 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 30.20 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 33.39 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.00000 REMARK 3 B22 (A**2) : -0.01000 REMARK 3 B33 (A**2) : 0.01000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.297 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.218 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.139 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 5.548 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.960 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.926 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 4848 ; 0.010 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 6656 ; 1.361 ; 1.962 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 649 ; 5.813 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 187 ;38.344 ;24.332 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 650 ;14.105 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 31 ;20.717 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 756 ; 0.085 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3807 ; 0.007 ; 0.022 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN USED IF PRESENT IN REMARK 3 THE INPUT REMARK 4 REMARK 4 4M1Z COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 22-AUG-13. REMARK 100 THE DEPOSITION ID IS D_1000081364. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 18-JUN-13 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.6 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRF REMARK 200 BEAMLINE : BL17U REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97906 REMARK 200 MONOCHROMATOR : SI 111 CHANNEL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 33595 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.250 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.5 REMARK 200 DATA REDUNDANCY : 4.000 REMARK 200 R MERGE (I) : 0.10200 REMARK 200 R SYM (I) : 0.10200 REMARK 200 FOR THE DATA SET : 12.9120 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.25 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.29 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.9 REMARK 200 DATA REDUNDANCY IN SHELL : 4.10 REMARK 200 R MERGE FOR SHELL (I) : 0.44400 REMARK 200 R SYM FOR SHELL (I) : 0.44400 REMARK 200 FOR SHELL : 2.845 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 4KB5 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 41.25 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.09 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1M SODIUM CITRATE, 20% (V/V) 2 REMARK 280 -PROPANOL, 20% (W/V) PEG 4000, PH 5.6, VAPOR DIFFUSION, SITTING REMARK 280 DROP, TEMPERATURE 283K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 41.65550 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 49.12450 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 41.80550 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 49.12450 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 41.65550 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 41.80550 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 980 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 13370 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -10.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1030 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 13720 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -9.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 51 REMARK 465 GLY A 52 REMARK 465 HIS A 53 REMARK 465 HIS A 54 REMARK 465 HIS A 55 REMARK 465 HIS A 56 REMARK 465 HIS A 57 REMARK 465 HIS A 58 REMARK 465 GLY A 59 REMARK 465 SER A 60 REMARK 465 HIS A 61 REMARK 465 MET A 62 REMARK 465 ALA A 63 REMARK 465 PHE A 160 REMARK 465 GLN A 161 REMARK 465 PRO A 162 REMARK 465 LYS A 163 REMARK 465 GLY A 164 REMARK 465 ALA A 165 REMARK 465 ARG A 166 REMARK 465 GLN A 167 REMARK 465 ASP A 168 REMARK 465 PRO A 169 REMARK 465 ASN A 170 REMARK 465 ASP A 171 REMARK 465 PRO A 172 REMARK 465 ASN A 173 REMARK 465 THR A 174 REMARK 465 THR A 175 REMARK 465 GLN A 176 REMARK 465 THR A 177 REMARK 465 ALA A 178 REMARK 465 ALA A 400 REMARK 465 PRO A 401 REMARK 465 PHE A 402 REMARK 465 ARG A 403 REMARK 465 VAL A 404 REMARK 465 LYS A 405 REMARK 465 GLU A 406 REMARK 465 VAL A 407 REMARK 465 PRO A 408 REMARK 465 PRO A 409 REMARK 465 PRO A 410 REMARK 465 VAL A 411 REMARK 465 TYR A 412 REMARK 465 ILE A 413 REMARK 465 PRO A 414 REMARK 465 PRO A 415 REMARK 465 PRO A 416 REMARK 465 ASP A 417 REMARK 465 ARG A 418 REMARK 465 GLY A 419 REMARK 465 PRO A 420 REMARK 465 ILE A 421 REMARK 465 THR A 422 REMARK 465 MET B 51 REMARK 465 GLY B 52 REMARK 465 HIS B 53 REMARK 465 HIS B 54 REMARK 465 HIS B 55 REMARK 465 HIS B 56 REMARK 465 HIS B 57 REMARK 465 HIS B 58 REMARK 465 GLY B 59 REMARK 465 SER B 60 REMARK 465 HIS B 61 REMARK 465 MET B 62 REMARK 465 ALA B 159 REMARK 465 PHE B 160 REMARK 465 GLN B 161 REMARK 465 PRO B 162 REMARK 465 LYS B 163 REMARK 465 GLY B 164 REMARK 465 ALA B 165 REMARK 465 ARG B 166 REMARK 465 GLN B 167 REMARK 465 ASP B 168 REMARK 465 PRO B 169 REMARK 465 ASN B 170 REMARK 465 ASP B 171 REMARK 465 PRO B 172 REMARK 465 ASN B 173 REMARK 465 THR B 174 REMARK 465 THR B 175 REMARK 465 GLN B 176 REMARK 465 GLY B 396 REMARK 465 PRO B 397 REMARK 465 GLU B 398 REMARK 465 LYS B 399 REMARK 465 ALA B 400 REMARK 465 PRO B 401 REMARK 465 PHE B 402 REMARK 465 ARG B 403 REMARK 465 VAL B 404 REMARK 465 LYS B 405 REMARK 465 GLU B 406 REMARK 465 VAL B 407 REMARK 465 PRO B 408 REMARK 465 PRO B 409 REMARK 465 PRO B 410 REMARK 465 VAL B 411 REMARK 465 TYR B 412 REMARK 465 ILE B 413 REMARK 465 PRO B 414 REMARK 465 PRO B 415 REMARK 465 PRO B 416 REMARK 465 ASP B 417 REMARK 465 ARG B 418 REMARK 465 GLY B 419 REMARK 465 PRO B 420 REMARK 465 ILE B 421 REMARK 465 THR B 422 REMARK 465 ARG C 403 REMARK 465 VAL C 404 REMARK 465 LYS C 405 REMARK 465 PRO C 416 REMARK 465 ASP C 417 REMARK 465 ARG C 418 REMARK 465 GLY C 419 REMARK 465 PRO C 420 REMARK 465 ILE C 421 REMARK 465 THR C 422 REMARK 465 PRO D 416 REMARK 465 ASP D 417 REMARK 465 ARG D 418 REMARK 465 GLY D 419 REMARK 465 PRO D 420 REMARK 465 ILE D 421 REMARK 465 THR D 422 REMARK 480 REMARK 480 ZERO OCCUPANCY ATOM REMARK 480 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO REMARK 480 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS REMARK 480 MAY NOT BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 480 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 480 M RES C SSEQI ATOMS REMARK 480 GLN A 265 CD REMARK 480 GLU B 76 CD REMARK 480 GLN B 265 CD REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 92 -145.88 -160.55 REMARK 500 MET A 117 41.53 -96.22 REMARK 500 HIS A 123 -72.97 -149.24 REMARK 500 ASP B 92 -148.80 -165.97 REMARK 500 HIS B 123 -77.69 -147.51 REMARK 500 ASP B 257 60.60 -119.45 REMARK 500 SER B 310 -144.34 -125.85 REMARK 500 ASN B 319 21.91 -145.88 REMARK 500 ALA B 320 141.70 178.52 REMARK 500 REMARK 500 REMARK: NULL REMARK 999 REMARK 999 SEQUENCE REMARK 999 RESIDUES 63-402 IN THE CHAINS C AND D ARE DELETIONS. DBREF 4M1Z A 63 422 UNP A0QNL1 A0QNL1_MYCS2 63 422 DBREF 4M1Z B 63 422 UNP A0QNL1 A0QNL1_MYCS2 63 422 DBREF 4M1Z C 403 422 UNP A0QNL1 A0QNL1_MYCS2 403 422 DBREF 4M1Z D 403 422 UNP A0QNL1 A0QNL1_MYCS2 403 422 SEQADV 4M1Z MET A 51 UNP A0QNL1 EXPRESSION TAG SEQADV 4M1Z GLY A 52 UNP A0QNL1 EXPRESSION TAG SEQADV 4M1Z HIS A 53 UNP A0QNL1 EXPRESSION TAG SEQADV 4M1Z HIS A 54 UNP A0QNL1 EXPRESSION TAG SEQADV 4M1Z HIS A 55 UNP A0QNL1 EXPRESSION TAG SEQADV 4M1Z HIS A 56 UNP A0QNL1 EXPRESSION TAG SEQADV 4M1Z HIS A 57 UNP A0QNL1 EXPRESSION TAG SEQADV 4M1Z HIS A 58 UNP A0QNL1 EXPRESSION TAG SEQADV 4M1Z GLY A 59 UNP A0QNL1 EXPRESSION TAG SEQADV 4M1Z SER A 60 UNP A0QNL1 EXPRESSION TAG SEQADV 4M1Z HIS A 61 UNP A0QNL1 EXPRESSION TAG SEQADV 4M1Z MET A 62 UNP A0QNL1 EXPRESSION TAG SEQADV 4M1Z MET B 51 UNP A0QNL1 EXPRESSION TAG SEQADV 4M1Z GLY B 52 UNP A0QNL1 EXPRESSION TAG SEQADV 4M1Z HIS B 53 UNP A0QNL1 EXPRESSION TAG SEQADV 4M1Z HIS B 54 UNP A0QNL1 EXPRESSION TAG SEQADV 4M1Z HIS B 55 UNP A0QNL1 EXPRESSION TAG SEQADV 4M1Z HIS B 56 UNP A0QNL1 EXPRESSION TAG SEQADV 4M1Z HIS B 57 UNP A0QNL1 EXPRESSION TAG SEQADV 4M1Z HIS B 58 UNP A0QNL1 EXPRESSION TAG SEQADV 4M1Z GLY B 59 UNP A0QNL1 EXPRESSION TAG SEQADV 4M1Z SER B 60 UNP A0QNL1 EXPRESSION TAG SEQADV 4M1Z HIS B 61 UNP A0QNL1 EXPRESSION TAG SEQADV 4M1Z MET B 62 UNP A0QNL1 EXPRESSION TAG SEQRES 1 A 372 MET GLY HIS HIS HIS HIS HIS HIS GLY SER HIS MET ALA SEQRES 2 A 372 ASP ARG PRO TRP ALA ASN ASP TYR LEU ARG ILE GLN GLU SEQRES 3 A 372 ALA GLN LYS PHE ALA THR GLY ALA GLY VAL THR VAL ALA SEQRES 4 A 372 VAL ILE ASP THR GLY VAL ASN GLY SER PRO ARG VAL PRO SEQRES 5 A 372 ALA GLU PRO GLY GLY ASP PHE VAL ASP ALA ALA GLY ASN SEQRES 6 A 372 GLY MET SER ASP CYS ASP ALA HIS GLY THR MET THR ALA SEQRES 7 A 372 ALA ILE ILE GLY GLY ARG PRO SER PRO THR ASP GLY PHE SEQRES 8 A 372 VAL GLY MET ALA PRO ASP VAL ARG LEU LEU SER LEU ARG SEQRES 9 A 372 GLN THR SER VAL ALA PHE GLN PRO LYS GLY ALA ARG GLN SEQRES 10 A 372 ASP PRO ASN ASP PRO ASN THR THR GLN THR ALA GLY SER SEQRES 11 A 372 ILE ARG SER LEU ALA ARG SER VAL VAL HIS ALA ALA ASN SEQRES 12 A 372 LEU GLY ALA GLN VAL ILE ASN ILE SER GLU ALA ALA CYS SEQRES 13 A 372 TYR LYS VAL THR ARG ARG ILE ASP GLU THR SER LEU GLY SEQRES 14 A 372 ALA ALA ILE ASN TYR ALA VAL ASN VAL LYS GLY ALA VAL SEQRES 15 A 372 ILE VAL VAL ALA ALA GLY ASN THR GLY GLN ASP CYS SER SEQRES 16 A 372 GLN ASN PRO PRO PRO ASP PRO SER VAL PRO SER ASP PRO SEQRES 17 A 372 ARG GLY TRP ARG GLU VAL GLN THR ILE VAL SER PRO ALA SEQRES 18 A 372 TRP TYR ASP PRO LEU VAL LEU THR VAL GLY SER ILE GLY SEQRES 19 A 372 GLN ASN GLY GLN PRO SER ASN PHE SER MET SER GLY PRO SEQRES 20 A 372 TRP VAL GLY ALA ALA ALA PRO GLY GLU ASN LEU THR SER SEQRES 21 A 372 LEU GLY TYR ASP GLY GLN PRO VAL ASN ALA THR PRO GLY SEQRES 22 A 372 GLU ASP GLY PRO VAL PRO LEU ASN GLY THR SER PHE SER SEQRES 23 A 372 ALA ALA TYR VAL SER GLY LEU ALA ALA LEU VAL LYS GLN SEQRES 24 A 372 ARG PHE PRO ASP LEU THR PRO ALA GLN ILE ILE ASN ARG SEQRES 25 A 372 ILE THR ALA THR ALA ARG HIS PRO GLY GLY GLY VAL ASP SEQRES 26 A 372 ASN TYR VAL GLY ALA GLY VAL ILE ASP PRO VAL ALA ALA SEQRES 27 A 372 LEU THR TRP GLU ILE PRO ASP GLY PRO GLU LYS ALA PRO SEQRES 28 A 372 PHE ARG VAL LYS GLU VAL PRO PRO PRO VAL TYR ILE PRO SEQRES 29 A 372 PRO PRO ASP ARG GLY PRO ILE THR SEQRES 1 B 372 MET GLY HIS HIS HIS HIS HIS HIS GLY SER HIS MET ALA SEQRES 2 B 372 ASP ARG PRO TRP ALA ASN ASP TYR LEU ARG ILE GLN GLU SEQRES 3 B 372 ALA GLN LYS PHE ALA THR GLY ALA GLY VAL THR VAL ALA SEQRES 4 B 372 VAL ILE ASP THR GLY VAL ASN GLY SER PRO ARG VAL PRO SEQRES 5 B 372 ALA GLU PRO GLY GLY ASP PHE VAL ASP ALA ALA GLY ASN SEQRES 6 B 372 GLY MET SER ASP CYS ASP ALA HIS GLY THR MET THR ALA SEQRES 7 B 372 ALA ILE ILE GLY GLY ARG PRO SER PRO THR ASP GLY PHE SEQRES 8 B 372 VAL GLY MET ALA PRO ASP VAL ARG LEU LEU SER LEU ARG SEQRES 9 B 372 GLN THR SER VAL ALA PHE GLN PRO LYS GLY ALA ARG GLN SEQRES 10 B 372 ASP PRO ASN ASP PRO ASN THR THR GLN THR ALA GLY SER SEQRES 11 B 372 ILE ARG SER LEU ALA ARG SER VAL VAL HIS ALA ALA ASN SEQRES 12 B 372 LEU GLY ALA GLN VAL ILE ASN ILE SER GLU ALA ALA CYS SEQRES 13 B 372 TYR LYS VAL THR ARG ARG ILE ASP GLU THR SER LEU GLY SEQRES 14 B 372 ALA ALA ILE ASN TYR ALA VAL ASN VAL LYS GLY ALA VAL SEQRES 15 B 372 ILE VAL VAL ALA ALA GLY ASN THR GLY GLN ASP CYS SER SEQRES 16 B 372 GLN ASN PRO PRO PRO ASP PRO SER VAL PRO SER ASP PRO SEQRES 17 B 372 ARG GLY TRP ARG GLU VAL GLN THR ILE VAL SER PRO ALA SEQRES 18 B 372 TRP TYR ASP PRO LEU VAL LEU THR VAL GLY SER ILE GLY SEQRES 19 B 372 GLN ASN GLY GLN PRO SER ASN PHE SER MET SER GLY PRO SEQRES 20 B 372 TRP VAL GLY ALA ALA ALA PRO GLY GLU ASN LEU THR SER SEQRES 21 B 372 LEU GLY TYR ASP GLY GLN PRO VAL ASN ALA THR PRO GLY SEQRES 22 B 372 GLU ASP GLY PRO VAL PRO LEU ASN GLY THR SER PHE SER SEQRES 23 B 372 ALA ALA TYR VAL SER GLY LEU ALA ALA LEU VAL LYS GLN SEQRES 24 B 372 ARG PHE PRO ASP LEU THR PRO ALA GLN ILE ILE ASN ARG SEQRES 25 B 372 ILE THR ALA THR ALA ARG HIS PRO GLY GLY GLY VAL ASP SEQRES 26 B 372 ASN TYR VAL GLY ALA GLY VAL ILE ASP PRO VAL ALA ALA SEQRES 27 B 372 LEU THR TRP GLU ILE PRO ASP GLY PRO GLU LYS ALA PRO SEQRES 28 B 372 PHE ARG VAL LYS GLU VAL PRO PRO PRO VAL TYR ILE PRO SEQRES 29 B 372 PRO PRO ASP ARG GLY PRO ILE THR SEQRES 1 C 20 ARG VAL LYS GLU VAL PRO PRO PRO VAL TYR ILE PRO PRO SEQRES 2 C 20 PRO ASP ARG GLY PRO ILE THR SEQRES 1 D 20 ARG VAL LYS GLU VAL PRO PRO PRO VAL TYR ILE PRO PRO SEQRES 2 D 20 PRO ASP ARG GLY PRO ILE THR FORMUL 5 HOH *291(H2 O) HELIX 1 1 PRO A 66 LEU A 72 1 7 HELIX 2 2 ARG A 73 LYS A 79 1 7 HELIX 3 3 HIS A 123 GLY A 133 1 11 HELIX 4 4 SER A 180 LEU A 194 1 15 HELIX 5 5 GLU A 215 VAL A 228 1 14 HELIX 6 6 GLY A 260 VAL A 264 5 5 HELIX 7 7 PRO A 270 ASP A 274 5 5 HELIX 8 8 GLY A 332 PHE A 351 1 20 HELIX 9 9 THR A 355 THR A 366 1 12 HELIX 10 10 ASP A 384 TRP A 391 1 8 HELIX 11 11 PRO B 66 LEU B 72 1 7 HELIX 12 12 ARG B 73 GLN B 78 1 6 HELIX 13 13 HIS B 123 GLY B 133 1 11 HELIX 14 14 ALA B 178 LEU B 194 1 17 HELIX 15 15 GLU B 215 VAL B 228 1 14 HELIX 16 16 GLY B 260 VAL B 264 5 5 HELIX 17 17 PRO B 270 ASP B 274 5 5 HELIX 18 18 GLY B 332 PHE B 351 1 20 HELIX 19 19 THR B 355 THR B 366 1 12 HELIX 20 20 ASP B 384 TRP B 391 1 8 SHEET 1 A 7 GLU A 104 ASP A 108 0 SHEET 2 A 7 ARG A 149 ARG A 154 1 O SER A 152 N GLU A 104 SHEET 3 A 7 THR A 87 ASP A 92 1 N VAL A 90 O LEU A 151 SHEET 4 A 7 VAL A 198 ILE A 201 1 O ASN A 200 N ILE A 91 SHEET 5 A 7 VAL A 232 ALA A 236 1 O VAL A 232 N ILE A 199 SHEET 6 A 7 LEU A 278 ILE A 283 1 O LEU A 278 N ILE A 233 SHEET 7 A 7 ALA A 301 PRO A 304 1 O ALA A 301 N GLY A 281 SHEET 1 B 2 ALA A 205 LYS A 208 0 SHEET 2 B 2 THR A 266 SER A 269 -1 O SER A 269 N ALA A 205 SHEET 1 C 2 SER A 310 LEU A 311 0 SHEET 2 C 2 PRO A 317 VAL A 318 -1 O VAL A 318 N SER A 310 SHEET 1 D 2 ALA A 320 GLY A 323 0 SHEET 2 D 2 GLY A 326 PRO A 329 -1 O VAL A 328 N THR A 321 SHEET 1 E 7 GLU B 104 ASP B 108 0 SHEET 2 E 7 ARG B 149 ARG B 154 1 O SER B 152 N GLU B 104 SHEET 3 E 7 THR B 87 ASP B 92 1 N VAL B 90 O LEU B 151 SHEET 4 E 7 VAL B 198 ILE B 201 1 O VAL B 198 N ALA B 89 SHEET 5 E 7 VAL B 232 ALA B 236 1 O VAL B 234 N ILE B 199 SHEET 6 E 7 LEU B 278 ILE B 283 1 O LEU B 278 N ILE B 233 SHEET 7 E 7 ALA B 301 PRO B 304 1 O ALA B 301 N GLY B 281 SHEET 1 F 2 ALA B 205 LYS B 208 0 SHEET 2 F 2 THR B 266 SER B 269 -1 O ILE B 267 N TYR B 207 SHEET 1 G 2 SER B 310 LEU B 311 0 SHEET 2 G 2 PRO B 317 VAL B 318 -1 O VAL B 318 N SER B 310 SHEET 1 H 2 ALA B 320 GLY B 323 0 SHEET 2 H 2 GLY B 326 PRO B 329 -1 O VAL B 328 N THR B 321 SSBOND 1 CYS A 206 CYS A 244 1555 1555 2.03 SSBOND 2 CYS B 206 CYS B 244 1555 1555 2.03 CISPEP 1 SER A 269 PRO A 270 0 8.00 CISPEP 2 ASP A 274 PRO A 275 0 9.80 CISPEP 3 SER B 269 PRO B 270 0 2.94 CISPEP 4 ASP B 274 PRO B 275 0 14.10 CRYST1 83.311 83.611 98.249 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.012003 0.000000 0.000000 0.00000 SCALE2 0.000000 0.011960 0.000000 0.00000 SCALE3 0.000000 0.000000 0.010178 0.00000