HEADER TRANSFERASE 05-AUG-13 4M28 TITLE UDP-GLUCOSE PYROPHOSPHORYLASE FROM LEISHMANIA MAJOR IN COMPLEX WITH TITLE 2 UTP ANALOG DUPCPP COMPND MOL_ID: 1; COMPND 2 MOLECULE: UDP-GLUCOSE PYROPHOSPHORYLASE; COMPND 3 CHAIN: A; COMPND 4 EC: 2.7.7.9; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: LEISHMANIA MAJOR; SOURCE 3 ORGANISM_TAXID: 5664; SOURCE 4 GENE: UGP, LMJF_18_0990; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS UDP-GLUCOSE PYROPHOSPHORYLASE, NUCLEOTIDYLTRANSFERASE, ROSSMANN-LIKE KEYWDS 2 ALPHA/BETA/ALPHA SANDWICH FOLD, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR J.I.FUEHRING,F.H.ROUTIER,A.-C.LAMERZ,P.BARUCH,R.GERARDY-SCHAHN, AUTHOR 2 R.FEDOROV REVDAT 4 20-SEP-23 4M28 1 REMARK SEQADV REVDAT 3 17-JUL-19 4M28 1 REMARK REVDAT 2 12-MAR-14 4M28 1 JRNL REVDAT 1 29-JAN-14 4M28 0 JRNL AUTH J.I.FUEHRING,F.H.ROUTIER,A.-C.LAMERZ,P.BARUCH, JRNL AUTH 2 R.GERARDY-SCHAHN,R.FEDOROV JRNL TITL CATALYTIC MECHANISM AND ALLOSTERIC REGULATION OF UDP-GLUCOSE JRNL TITL 2 PYROPHOSPHORYLASE FROM LEISHMANIA MAJOR JRNL REF ACS CATALYSIS V. 3 2976 2013 JRNL REFN ESSN 2155-5435 JRNL DOI 10.1021/CS4007777 REMARK 2 REMARK 2 RESOLUTION. 3.00 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.7.0032 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 3.00 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 47.27 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 90.0 REMARK 3 NUMBER OF REFLECTIONS : 10539 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.216 REMARK 3 R VALUE (WORKING SET) : 0.213 REMARK 3 FREE R VALUE : 0.279 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.900 REMARK 3 FREE R VALUE TEST SET COUNT : 546 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 3.00 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 3.08 REMARK 3 REFLECTION IN BIN (WORKING SET) : 713 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 84.52 REMARK 3 BIN R VALUE (WORKING SET) : 0.2540 REMARK 3 BIN FREE R VALUE SET COUNT : 46 REMARK 3 BIN FREE R VALUE : 0.3150 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3730 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 28 REMARK 3 SOLVENT ATOMS : 76 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 70.00 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 84.19 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): 0.533 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.384 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 21.525 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.932 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.904 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3831 ; 0.009 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 3656 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 5196 ; 1.150 ; 1.977 REMARK 3 BOND ANGLES OTHERS (DEGREES): 8435 ; 0.718 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 482 ; 5.203 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 164 ;37.569 ;24.756 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 666 ;16.490 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 20 ;13.663 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 592 ; 0.056 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 4314 ; 0.004 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 830 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1931 ; 5.005 ; 8.288 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1930 ; 5.005 ; 8.286 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2412 ; 7.580 ;12.434 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 2413 ; 7.578 ;12.436 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1899 ; 5.382 ; 8.736 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 1887 ; 5.349 ; 8.680 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 2764 ; 8.208 ;12.865 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 4259 ;11.401 ;65.716 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 4252 ;11.295 ;65.629 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4M28 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 07-AUG-13. REMARK 100 THE DEPOSITION ID IS D_1000081373. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 12-MAY-13 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.4 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID23-2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.87260 REMARK 200 MONOCHROMATOR : MONOCHROMATOR (HORIZONTALLY SIDE REMARK 200 DIFFRACTING SILICON 111 CRYSTAL). REMARK 200 OPTICS : MONOCHROMATOR (HORIZONTALLY SIDE REMARK 200 DIFFRACTING SILICON 111 CRYSTAL). REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 225 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : SADABS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 11151 REMARK 200 RESOLUTION RANGE HIGH (A) : 3.000 REMARK 200 RESOLUTION RANGE LOW (A) : 47.300 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 90.0 REMARK 200 DATA REDUNDANCY : 11.00 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 8.00000 REMARK 200 FOR THE DATA SET : 11.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: CNS REMARK 200 STARTING MODEL: PDB ENTRY 2OEF REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 53.87 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.67 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M MES, 20% W/V PEG-4000, 200 MM REMARK 280 LI2SO4, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 293.15K, PH REMARK 280 6.4 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 2 2 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -X,Y,-Z+1/2 REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 76.29500 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 76.29500 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 36.12500 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 54.23500 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 36.12500 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 54.23500 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 76.29500 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 36.12500 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 54.23500 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 76.29500 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 36.12500 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 54.23500 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2950 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 42770 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -10.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 -76.29500 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A2017 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 GLU A 2 REMARK 465 ASN A 3 REMARK 465 ASP A 4 REMARK 465 MET A 5 REMARK 465 GLN A 489 REMARK 465 GLN A 490 REMARK 465 SER A 491 REMARK 465 THR A 492 REMARK 465 ASN A 493 REMARK 465 LYS A 494 REMARK 465 MET A 495 REMARK 465 ARG A 496 REMARK 465 PRO A 497 REMARK 465 LEU A 498 REMARK 465 GLU A 499 REMARK 465 HIS A 500 REMARK 465 HIS A 501 REMARK 465 HIS A 502 REMARK 465 HIS A 503 REMARK 465 HIS A 504 REMARK 465 HIS A 505 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 VAL A 100 -66.87 -102.79 REMARK 500 CYS A 121 -71.18 -131.53 REMARK 500 PRO A 189 42.03 -98.56 REMARK 500 ASP A 274 -66.42 -136.57 REMARK 500 SER A 471 -141.07 56.79 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE UPC A 1001 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2OEF RELATED DB: PDB REMARK 900 APO-FORM OF THE SAME ENZYME REMARK 900 RELATED ID: 2OEG RELATED DB: PDB REMARK 900 THE SAME ENZYME IN COMPLEX WITH UDP-GLUCOSE REMARK 900 RELATED ID: 4M2A RELATED DB: PDB REMARK 900 RELATED ID: 4M2B RELATED DB: PDB DBREF 4M28 A 1 494 UNP Q4QDU3 Q4QDU3_LEIMA 1 494 SEQADV 4M28 MET A 495 UNP Q4QDU3 EXPRESSION TAG SEQADV 4M28 ARG A 496 UNP Q4QDU3 EXPRESSION TAG SEQADV 4M28 PRO A 497 UNP Q4QDU3 EXPRESSION TAG SEQADV 4M28 LEU A 498 UNP Q4QDU3 EXPRESSION TAG SEQADV 4M28 GLU A 499 UNP Q4QDU3 EXPRESSION TAG SEQADV 4M28 HIS A 500 UNP Q4QDU3 EXPRESSION TAG SEQADV 4M28 HIS A 501 UNP Q4QDU3 EXPRESSION TAG SEQADV 4M28 HIS A 502 UNP Q4QDU3 EXPRESSION TAG SEQADV 4M28 HIS A 503 UNP Q4QDU3 EXPRESSION TAG SEQADV 4M28 HIS A 504 UNP Q4QDU3 EXPRESSION TAG SEQADV 4M28 HIS A 505 UNP Q4QDU3 EXPRESSION TAG SEQRES 1 A 505 MET GLU ASN ASP MET LYS SER LEU SER ALA ALA ALA GLN SEQRES 2 A 505 ALA CYS VAL LYS LYS MET ARG ASP ALA LYS VAL ASN GLU SEQRES 3 A 505 ALA CYS ILE ARG THR PHE ILE ALA GLN HIS VAL MET VAL SEQRES 4 A 505 SER LYS GLY GLU THR GLY SER ILE PRO ASP SER ALA ILE SEQRES 5 A 505 MET PRO VAL ASP SER LEU ASP ALA LEU ASP SER LEU THR SEQRES 6 A 505 ILE GLU CYS ASP ASN ALA VAL LEU GLN SER THR VAL VAL SEQRES 7 A 505 LEU LYS LEU ASN GLY GLY LEU GLY THR GLY MET GLY LEU SEQRES 8 A 505 CYS ASP ALA LYS THR LEU LEU GLU VAL LYS ASP GLY LYS SEQRES 9 A 505 THR PHE LEU ASP PHE THR ALA LEU GLN VAL GLN TYR LEU SEQRES 10 A 505 ARG GLN HIS CYS SER GLU HIS LEU ARG PHE MET LEU MET SEQRES 11 A 505 ASP SER PHE ASN THR SER ALA SER THR LYS SER PHE LEU SEQRES 12 A 505 LYS ALA ARG TYR PRO TRP LEU TYR GLN VAL PHE ASP SER SEQRES 13 A 505 GLU VAL GLU LEU MET GLN ASN GLN VAL PRO LYS ILE LEU SEQRES 14 A 505 GLN ASP THR LEU GLU PRO ALA ALA TRP ALA GLU ASN PRO SEQRES 15 A 505 ALA TYR GLU TRP ALA PRO PRO GLY HIS GLY ASP ILE TYR SEQRES 16 A 505 THR ALA LEU TYR GLY SER GLY LYS LEU GLN GLU LEU VAL SEQRES 17 A 505 GLU GLN GLY TYR ARG TYR MET PHE VAL SER ASN GLY ASP SEQRES 18 A 505 ASN LEU GLY ALA THR ILE ASP LYS ARG VAL LEU ALA TYR SEQRES 19 A 505 MET GLU LYS GLU LYS ILE ASP PHE LEU MET GLU VAL CYS SEQRES 20 A 505 ARG ARG THR GLU SER ASP LYS LYS GLY GLY HIS LEU ALA SEQRES 21 A 505 ARG GLN THR VAL TYR VAL LYS GLY LYS ASP GLY GLN PRO SEQRES 22 A 505 ASP ALA GLU LYS ARG VAL LEU LEU LEU ARG GLU SER ALA SEQRES 23 A 505 GLN CYS PRO LYS ALA ASP MET GLU SER PHE GLN ASP ILE SEQRES 24 A 505 ASN LYS TYR SER PHE PHE ASN THR ASN ASN LEU TRP ILE SEQRES 25 A 505 ARG LEU PRO VAL LEU LEU GLU THR MET GLN GLU HIS GLY SEQRES 26 A 505 GLY THR LEU PRO LEU PRO VAL ILE ARG ASN GLU LYS THR SEQRES 27 A 505 VAL ASP SER SER ASN SER ALA SER PRO LYS VAL TYR GLN SEQRES 28 A 505 LEU GLU THR ALA MET GLY ALA ALA ILE ALA MET PHE GLU SEQRES 29 A 505 SER ALA SER ALA ILE VAL VAL PRO ARG SER ARG PHE ALA SEQRES 30 A 505 PRO VAL LYS THR CYS ALA ASP LEU LEU ALA LEU ARG SER SEQRES 31 A 505 ASP ALA TYR VAL VAL THR ASP ASP PHE ARG LEU VAL LEU SEQRES 32 A 505 ASP ASP ARG CYS HIS GLY HIS PRO PRO VAL VAL ASP LEU SEQRES 33 A 505 ASP SER ALA HIS TYR LYS MET MET ASN GLY PHE GLU LYS SEQRES 34 A 505 LEU VAL GLN HIS GLY VAL PRO SER LEU VAL GLU CYS LYS SEQRES 35 A 505 ARG VAL THR VAL LYS GLY LEU VAL GLN PHE GLY ALA GLY SEQRES 36 A 505 ASN VAL LEU THR GLY THR VAL THR ILE GLU ASN THR ASP SEQRES 37 A 505 SER ALA SER ALA PHE VAL ILE PRO ASP GLY ALA LYS LEU SEQRES 38 A 505 ASN ASP THR THR ALA SER PRO GLN GLN SER THR ASN LYS SEQRES 39 A 505 MET ARG PRO LEU GLU HIS HIS HIS HIS HIS HIS HET UPC A1001 28 HETNAM UPC 2'-DEOXY-5'-O-[(R)-HYDROXY{[(R)-HYDROXY(PHOSPHONOOXY) HETNAM 2 UPC PHOSPHORYL]METHYL}PHOSPHORYL]URIDINE FORMUL 2 UPC C10 H17 N2 O13 P3 FORMUL 3 HOH *76(H2 O) HELIX 1 1 SER A 9 ALA A 22 1 14 HELIX 2 2 ASN A 25 LYS A 41 1 17 HELIX 3 3 PRO A 48 ILE A 52 5 5 HELIX 4 4 ALA A 60 LEU A 64 5 5 HELIX 5 5 ASP A 69 GLN A 74 1 6 HELIX 6 6 GLY A 86 GLY A 90 5 5 HELIX 7 7 ALA A 94 LEU A 97 5 4 HELIX 8 8 PHE A 106 CYS A 121 1 16 HELIX 9 9 SER A 132 TYR A 147 1 16 HELIX 10 10 TYR A 147 ASP A 155 1 9 HELIX 11 11 ASN A 181 TYR A 184 5 4 HELIX 12 12 GLY A 192 SER A 201 1 10 HELIX 13 13 GLY A 202 GLN A 210 1 9 HELIX 14 14 ASP A 228 LYS A 239 1 12 HELIX 15 15 THR A 250 LYS A 254 5 5 HELIX 16 16 GLU A 284 CYS A 288 5 5 HELIX 17 17 PRO A 289 ALA A 291 5 3 HELIX 18 18 ASP A 292 GLN A 297 1 6 HELIX 19 19 LEU A 314 HIS A 324 1 11 HELIX 20 20 ALA A 355 PHE A 363 5 9 HELIX 21 21 PRO A 372 PHE A 376 5 5 HELIX 22 22 THR A 381 SER A 390 1 10 HELIX 23 23 ASP A 405 HIS A 408 5 4 HELIX 24 24 ASP A 417 LYS A 422 1 6 HELIX 25 25 MET A 423 VAL A 431 1 9 SHEET 1 A 3 MET A 53 PRO A 54 0 SHEET 2 A 3 HIS A 258 GLN A 262 -1 O ARG A 261 N MET A 53 SHEET 3 A 3 VAL A 279 ARG A 283 -1 O VAL A 279 N GLN A 262 SHEET 1 B 7 GLU A 159 MET A 161 0 SHEET 2 B 7 ARG A 126 ASP A 131 1 N LEU A 129 O LEU A 160 SHEET 3 B 7 THR A 76 ASN A 82 1 N VAL A 78 O ARG A 126 SHEET 4 B 7 TYR A 214 ASN A 219 1 O PHE A 216 N VAL A 77 SHEET 5 B 7 PHE A 304 ARG A 313 -1 O LEU A 310 N VAL A 217 SHEET 6 B 7 PHE A 242 ARG A 248 -1 N LEU A 243 O TRP A 311 SHEET 7 B 7 ALA A 366 VAL A 370 1 O ILE A 369 N VAL A 246 SHEET 1 C 2 GLU A 99 LYS A 101 0 SHEET 2 C 2 LYS A 104 THR A 105 -1 O LYS A 104 N VAL A 100 SHEET 1 D 2 VAL A 165 PRO A 166 0 SHEET 2 D 2 TRP A 186 ALA A 187 -1 O ALA A 187 N VAL A 165 SHEET 1 E 3 ILE A 168 LEU A 169 0 SHEET 2 E 3 LYS A 348 GLU A 353 -1 O TYR A 350 N ILE A 168 SHEET 3 E 3 ILE A 333 THR A 338 -1 N LYS A 337 O VAL A 349 SHEET 1 F 2 TYR A 393 VAL A 395 0 SHEET 2 F 2 LEU A 401 LEU A 403 -1 O VAL A 402 N VAL A 394 SHEET 1 G 4 VAL A 413 LEU A 416 0 SHEET 2 G 4 ARG A 443 LYS A 447 1 O VAL A 444 N ASP A 415 SHEET 3 G 4 VAL A 457 GLU A 465 1 O ILE A 464 N LYS A 447 SHEET 4 G 4 LYS A 480 ALA A 486 1 O ALA A 486 N THR A 463 SHEET 1 H 2 VAL A 450 GLN A 451 0 SHEET 2 H 2 PHE A 473 VAL A 474 1 O PHE A 473 N GLN A 451 SSBOND 1 CYS A 92 CYS A 92 1555 3554 2.34 SITE 1 AC1 13 LEU A 81 GLY A 83 GLY A 84 LEU A 85 SITE 2 AC1 13 GLY A 86 THR A 87 GLN A 162 GLY A 190 SITE 3 AC1 13 HIS A 191 ASP A 221 HOH A2029 HOH A2033 SITE 4 AC1 13 HOH A2037 CRYST1 72.250 108.470 152.590 90.00 90.00 90.00 C 2 2 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.013841 0.000000 0.000000 0.00000 SCALE2 0.000000 0.009219 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006554 0.00000