data_4M2Y # _entry.id 4M2Y # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.379 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 4M2Y pdb_00004m2y 10.2210/pdb4m2y/pdb NDB NA2645 ? ? RCSB RCSB081399 ? ? WWPDB D_1000081399 ? ? # loop_ _pdbx_database_related.db_name _pdbx_database_related.db_id _pdbx_database_related.details _pdbx_database_related.content_type PDB 3ISB 'open conformation of pol B' unspecified PDB 1BPX 'pol B complexed with gapped DNA at n position' unspecified PDB 4M47 . unspecified # _pdbx_database_status.entry_id 4M2Y _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.recvd_initial_deposition_date 2013-08-05 _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_nmr_data ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Koag, M.C.' 1 'Min, K.' 2 'Monzingo, A.F.' 3 'Lee, S.' 4 # _citation.id primary _citation.title 'Structural basis for promutagenicity of 8-halogenated Guanine.' _citation.journal_abbrev J.Biol.Chem. _citation.journal_volume 289 _citation.page_first 6289 _citation.page_last 6298 _citation.year 2014 _citation.journal_id_ASTM JBCHA3 _citation.country US _citation.journal_id_ISSN 0021-9258 _citation.journal_id_CSD 0071 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 24425881 _citation.pdbx_database_id_DOI 10.1074/jbc.M113.537803 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Koag, M.C.' 1 ? primary 'Min, K.' 2 ? primary 'Lee, S.' 3 ? # _cell.length_a 54.554 _cell.length_b 79.271 _cell.length_c 54.915 _cell.angle_alpha 90.000 _cell.angle_beta 105.480 _cell.angle_gamma 90.000 _cell.entry_id 4M2Y _cell.pdbx_unique_axis ? _cell.Z_PDB 2 _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.space_group_name_H-M 'P 1 21 1' _symmetry.entry_id 4M2Y _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.Int_Tables_number 4 _symmetry.cell_setting ? _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'DNA polymerase beta' 37081.309 1 '2.7.7.7, 4.2.99.-' ? ? ? 2 polymer syn 'template DNA strand' 4923.040 1 ? ? ? ? 3 polymer syn up-primer 3085.029 1 ? ? ? ? 4 polymer syn down-primer 1536.035 1 ? ? ? ? 5 non-polymer syn 'SODIUM ION' 22.990 2 ? ? ? ? 6 water nat water 18.015 72 ? ? ? ? # loop_ _entity_poly.entity_id _entity_poly.type _entity_poly.nstd_linkage _entity_poly.nstd_monomer _entity_poly.pdbx_seq_one_letter_code _entity_poly.pdbx_seq_one_letter_code_can _entity_poly.pdbx_strand_id _entity_poly.pdbx_target_identifier 1 'polypeptide(L)' no no ;LNGGITDMLTELANFEKNVSQAIHKYNAYRKAASVIAKYPHKIKSGAEAKKLPGVGTKIAEKIDEFLATGKLRKLEKIRQ DDTSSSINFLTRVSGIGPSAARKFVDEGIKTLEDLRKNEDKLNHHQRIGLKYFGDFEKRIPREEMLQMQDIVLNEVKKVD SEYIATVCGSFRRGAESSGDMDVLLTHPSFTSESTKQPKLLHQVVEQLQKVHFITDTLSKGETKFMGVCQLPSKNDEKEY PHRRIDIRLIPKDQYYCGVLYFTGSDIFNKNMRAHALEKGFTINEYTIRPLGVTGVAGEPLPVDSEKDIFDYIQWKYREP KDRSE ; ;LNGGITDMLTELANFEKNVSQAIHKYNAYRKAASVIAKYPHKIKSGAEAKKLPGVGTKIAEKIDEFLATGKLRKLEKIRQ DDTSSSINFLTRVSGIGPSAARKFVDEGIKTLEDLRKNEDKLNHHQRIGLKYFGDFEKRIPREEMLQMQDIVLNEVKKVD SEYIATVCGSFRRGAESSGDMDVLLTHPSFTSESTKQPKLLHQVVEQLQKVHFITDTLSKGETKFMGVCQLPSKNDEKEY PHRRIDIRLIPKDQYYCGVLYFTGSDIFNKNMRAHALEKGFTINEYTIRPLGVTGVAGEPLPVDSEKDIFDYIQWKYREP KDRSE ; A ? 2 polydeoxyribonucleotide no yes '(DC)(DC)(DG)(DA)(DC)(BGM)(DT)(DC)(DG)(DC)(DA)(DT)(DC)(DA)(DG)(DC)' CCGACGTCGCATCAGC T ? 3 polydeoxyribonucleotide no no '(DG)(DC)(DT)(DG)(DA)(DT)(DG)(DC)(DG)(DA)' GCTGATGCGA P ? 4 polydeoxyribonucleotide no no '(DG)(DT)(DC)(DG)(DG)' GTCGG D ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 LEU n 1 2 ASN n 1 3 GLY n 1 4 GLY n 1 5 ILE n 1 6 THR n 1 7 ASP n 1 8 MET n 1 9 LEU n 1 10 THR n 1 11 GLU n 1 12 LEU n 1 13 ALA n 1 14 ASN n 1 15 PHE n 1 16 GLU n 1 17 LYS n 1 18 ASN n 1 19 VAL n 1 20 SER n 1 21 GLN n 1 22 ALA n 1 23 ILE n 1 24 HIS n 1 25 LYS n 1 26 TYR n 1 27 ASN n 1 28 ALA n 1 29 TYR n 1 30 ARG n 1 31 LYS n 1 32 ALA n 1 33 ALA n 1 34 SER n 1 35 VAL n 1 36 ILE n 1 37 ALA n 1 38 LYS n 1 39 TYR n 1 40 PRO n 1 41 HIS n 1 42 LYS n 1 43 ILE n 1 44 LYS n 1 45 SER n 1 46 GLY n 1 47 ALA n 1 48 GLU n 1 49 ALA n 1 50 LYS n 1 51 LYS n 1 52 LEU n 1 53 PRO n 1 54 GLY n 1 55 VAL n 1 56 GLY n 1 57 THR n 1 58 LYS n 1 59 ILE n 1 60 ALA n 1 61 GLU n 1 62 LYS n 1 63 ILE n 1 64 ASP n 1 65 GLU n 1 66 PHE n 1 67 LEU n 1 68 ALA n 1 69 THR n 1 70 GLY n 1 71 LYS n 1 72 LEU n 1 73 ARG n 1 74 LYS n 1 75 LEU n 1 76 GLU n 1 77 LYS n 1 78 ILE n 1 79 ARG n 1 80 GLN n 1 81 ASP n 1 82 ASP n 1 83 THR n 1 84 SER n 1 85 SER n 1 86 SER n 1 87 ILE n 1 88 ASN n 1 89 PHE n 1 90 LEU n 1 91 THR n 1 92 ARG n 1 93 VAL n 1 94 SER n 1 95 GLY n 1 96 ILE n 1 97 GLY n 1 98 PRO n 1 99 SER n 1 100 ALA n 1 101 ALA n 1 102 ARG n 1 103 LYS n 1 104 PHE n 1 105 VAL n 1 106 ASP n 1 107 GLU n 1 108 GLY n 1 109 ILE n 1 110 LYS n 1 111 THR n 1 112 LEU n 1 113 GLU n 1 114 ASP n 1 115 LEU n 1 116 ARG n 1 117 LYS n 1 118 ASN n 1 119 GLU n 1 120 ASP n 1 121 LYS n 1 122 LEU n 1 123 ASN n 1 124 HIS n 1 125 HIS n 1 126 GLN n 1 127 ARG n 1 128 ILE n 1 129 GLY n 1 130 LEU n 1 131 LYS n 1 132 TYR n 1 133 PHE n 1 134 GLY n 1 135 ASP n 1 136 PHE n 1 137 GLU n 1 138 LYS n 1 139 ARG n 1 140 ILE n 1 141 PRO n 1 142 ARG n 1 143 GLU n 1 144 GLU n 1 145 MET n 1 146 LEU n 1 147 GLN n 1 148 MET n 1 149 GLN n 1 150 ASP n 1 151 ILE n 1 152 VAL n 1 153 LEU n 1 154 ASN n 1 155 GLU n 1 156 VAL n 1 157 LYS n 1 158 LYS n 1 159 VAL n 1 160 ASP n 1 161 SER n 1 162 GLU n 1 163 TYR n 1 164 ILE n 1 165 ALA n 1 166 THR n 1 167 VAL n 1 168 CYS n 1 169 GLY n 1 170 SER n 1 171 PHE n 1 172 ARG n 1 173 ARG n 1 174 GLY n 1 175 ALA n 1 176 GLU n 1 177 SER n 1 178 SER n 1 179 GLY n 1 180 ASP n 1 181 MET n 1 182 ASP n 1 183 VAL n 1 184 LEU n 1 185 LEU n 1 186 THR n 1 187 HIS n 1 188 PRO n 1 189 SER n 1 190 PHE n 1 191 THR n 1 192 SER n 1 193 GLU n 1 194 SER n 1 195 THR n 1 196 LYS n 1 197 GLN n 1 198 PRO n 1 199 LYS n 1 200 LEU n 1 201 LEU n 1 202 HIS n 1 203 GLN n 1 204 VAL n 1 205 VAL n 1 206 GLU n 1 207 GLN n 1 208 LEU n 1 209 GLN n 1 210 LYS n 1 211 VAL n 1 212 HIS n 1 213 PHE n 1 214 ILE n 1 215 THR n 1 216 ASP n 1 217 THR n 1 218 LEU n 1 219 SER n 1 220 LYS n 1 221 GLY n 1 222 GLU n 1 223 THR n 1 224 LYS n 1 225 PHE n 1 226 MET n 1 227 GLY n 1 228 VAL n 1 229 CYS n 1 230 GLN n 1 231 LEU n 1 232 PRO n 1 233 SER n 1 234 LYS n 1 235 ASN n 1 236 ASP n 1 237 GLU n 1 238 LYS n 1 239 GLU n 1 240 TYR n 1 241 PRO n 1 242 HIS n 1 243 ARG n 1 244 ARG n 1 245 ILE n 1 246 ASP n 1 247 ILE n 1 248 ARG n 1 249 LEU n 1 250 ILE n 1 251 PRO n 1 252 LYS n 1 253 ASP n 1 254 GLN n 1 255 TYR n 1 256 TYR n 1 257 CYS n 1 258 GLY n 1 259 VAL n 1 260 LEU n 1 261 TYR n 1 262 PHE n 1 263 THR n 1 264 GLY n 1 265 SER n 1 266 ASP n 1 267 ILE n 1 268 PHE n 1 269 ASN n 1 270 LYS n 1 271 ASN n 1 272 MET n 1 273 ARG n 1 274 ALA n 1 275 HIS n 1 276 ALA n 1 277 LEU n 1 278 GLU n 1 279 LYS n 1 280 GLY n 1 281 PHE n 1 282 THR n 1 283 ILE n 1 284 ASN n 1 285 GLU n 1 286 TYR n 1 287 THR n 1 288 ILE n 1 289 ARG n 1 290 PRO n 1 291 LEU n 1 292 GLY n 1 293 VAL n 1 294 THR n 1 295 GLY n 1 296 VAL n 1 297 ALA n 1 298 GLY n 1 299 GLU n 1 300 PRO n 1 301 LEU n 1 302 PRO n 1 303 VAL n 1 304 ASP n 1 305 SER n 1 306 GLU n 1 307 LYS n 1 308 ASP n 1 309 ILE n 1 310 PHE n 1 311 ASP n 1 312 TYR n 1 313 ILE n 1 314 GLN n 1 315 TRP n 1 316 LYS n 1 317 TYR n 1 318 ARG n 1 319 GLU n 1 320 PRO n 1 321 LYS n 1 322 ASP n 1 323 ARG n 1 324 SER n 1 325 GLU n 2 1 DC n 2 2 DC n 2 3 DG n 2 4 DA n 2 5 DC n 2 6 BGM n 2 7 DT n 2 8 DC n 2 9 DG n 2 10 DC n 2 11 DA n 2 12 DT n 2 13 DC n 2 14 DA n 2 15 DG n 2 16 DC n 3 1 DG n 3 2 DC n 3 3 DT n 3 4 DG n 3 5 DA n 3 6 DT n 3 7 DG n 3 8 DC n 3 9 DG n 3 10 DA n 4 1 DG n 4 2 DT n 4 3 DC n 4 4 DG n 4 5 DG n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name human _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene POLB _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Homo sapiens' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 9606 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain ? _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type ? _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name ? _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # loop_ _pdbx_entity_src_syn.entity_id _pdbx_entity_src_syn.pdbx_src_id _pdbx_entity_src_syn.pdbx_alt_source_flag _pdbx_entity_src_syn.pdbx_beg_seq_num _pdbx_entity_src_syn.pdbx_end_seq_num _pdbx_entity_src_syn.organism_scientific _pdbx_entity_src_syn.organism_common_name _pdbx_entity_src_syn.ncbi_taxonomy_id _pdbx_entity_src_syn.details 2 1 sample ? ? ? ? ? 'this is a synthetic sequence.' 3 1 sample ? ? ? ? ? 'this is complementary sequence upstream of gap.' 4 1 sample ? ? ? ? ? 'this is complementary sequence downstream of gap.' # loop_ _struct_ref.id _struct_ref.db_name _struct_ref.db_code _struct_ref.pdbx_db_accession _struct_ref.entity_id _struct_ref.pdbx_seq_one_letter_code _struct_ref.pdbx_align_begin _struct_ref.pdbx_db_isoform 1 UNP DPOLB_HUMAN P06746 1 ;LNGGITDMLTELANFEKNVSQAIHKYNAYRKAASVIAKYPHKIKSGAEAKKLPGVGTKIAEKIDEFLATGKLRKLEKIRQ DDTSSSINFLTRVSGIGPSAARKFVDEGIKTLEDLRKNEDKLNHHQRIGLKYFGDFEKRIPREEMLQMQDIVLNEVKKVD SEYIATVCGSFRRGAESSGDMDVLLTHPSFTSESTKQPKLLHQVVEQLQKVHFITDTLSKGETKFMGVCQLPSKNDEKEY PHRRIDIRLIPKDQYYCGVLYFTGSDIFNKNMRAHALEKGFTINEYTIRPLGVTGVAGEPLPVDSEKDIFDYIQWKYREP KDRSE ; 11 ? 2 PDB 4M2Y 4M2Y 2 CCGACGTCGCATCAGC ? ? 3 PDB 4M2Y 4M2Y 3 GCTGATGCGA ? ? 4 PDB 4M2Y 4M2Y 4 GTCGG ? ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 4M2Y A 1 ? 325 ? P06746 11 ? 335 ? 11 335 2 2 4M2Y T 1 ? 16 ? 4M2Y 1 ? 16 ? 1 16 3 3 4M2Y P 1 ? 10 ? 4M2Y 1 ? 10 ? 1 10 4 4 4M2Y D 1 ? 5 ? 4M2Y 1 ? 5 ? 1 5 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 BGM 'DNA linking' n "8-BROMO-2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H13 Br N5 O7 P' 426.117 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 DA 'DNA linking' y "2'-DEOXYADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O6 P' 331.222 DC 'DNA linking' y "2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O7 P' 307.197 DG 'DNA linking' y "2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 DT 'DNA linking' y "THYMIDINE-5'-MONOPHOSPHATE" ? 'C10 H15 N2 O8 P' 322.208 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 NA non-polymer . 'SODIUM ION' ? 'Na 1' 22.990 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.crystals_number 1 _exptl.entry_id 4M2Y _exptl.method 'X-RAY DIFFRACTION' # _exptl_crystal.id 1 _exptl_crystal.density_Matthews 2.45 _exptl_crystal.density_meas ? _exptl_crystal.density_percent_sol 49.88 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, SITTING DROP' _exptl_crystal_grow.pH 7.5 _exptl_crystal_grow.temp 295 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pdbx_details '14-23% PEG 3340, 350mM sodium acetate in 50 mM imidazole, pH 7.5, VAPOR DIFFUSION, SITTING DROP, temperature 295K' _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector 'IMAGE PLATE' _diffrn_detector.type 'RIGAKU RAXIS IV++' _diffrn_detector.pdbx_collection_date 2013-03-06 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.monochromator 'Varimax focusing mirror' _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 1.5418 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source 'ROTATING ANODE' _diffrn_source.type 'RIGAKU MICROMAX-007 HF' _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list 1.5418 _diffrn_source.pdbx_synchrotron_site ? _diffrn_source.pdbx_synchrotron_beamline ? # _reflns.entry_id 4M2Y _reflns.observed_criterion_sigma_F ? _reflns.observed_criterion_sigma_I 0 _reflns.d_resolution_high 2.27 _reflns.d_resolution_low 20 _reflns.number_all 20228 _reflns.number_obs 20228 _reflns.percent_possible_obs 97.1 _reflns.pdbx_Rmerge_I_obs ? _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI ? _reflns.B_iso_Wilson_estimate ? _reflns.pdbx_redundancy ? _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_ordinal 1 _reflns.pdbx_diffrn_id 1 # _refine.entry_id 4M2Y _refine.ls_d_res_high 2.2700 _refine.ls_d_res_low 19.8300 _refine.pdbx_ls_sigma_F 0.000 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.ls_percent_reflns_obs 94.2700 _refine.ls_number_reflns_obs 19695 _refine.ls_number_reflns_all ? _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.pdbx_R_Free_selection_details RANDOM _refine.details 'HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS U VALUES : REFINED INDIVIDUALLY' _refine.ls_R_factor_all ? _refine.ls_R_factor_obs 0.2151 _refine.ls_R_factor_R_work 0.2120 _refine.ls_wR_factor_R_work ? _refine.ls_R_factor_R_free 0.2694 _refine.ls_wR_factor_R_free ? _refine.ls_percent_reflns_R_free 5.1000 _refine.ls_number_reflns_R_free 1011 _refine.ls_R_factor_R_free_error ? _refine.B_iso_mean 28.3099 _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.pdbx_isotropic_thermal_model ? _refine.aniso_B[1][1] 0.8100 _refine.aniso_B[2][2] -0.4900 _refine.aniso_B[3][3] -0.3800 _refine.aniso_B[1][2] -0.0000 _refine.aniso_B[1][3] 0.4400 _refine.aniso_B[2][3] -0.0000 _refine.correlation_coeff_Fo_to_Fc 0.9260 _refine.correlation_coeff_Fo_to_Fc_free 0.8850 _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.pdbx_overall_ESU_R 0.3780 _refine.pdbx_overall_ESU_R_Free 0.2650 _refine.overall_SU_ML 0.1870 _refine.overall_SU_B 7.5500 _refine.solvent_model_details MASK _refine.pdbx_solvent_vdw_probe_radii 1.2000 _refine.pdbx_solvent_ion_probe_radii 0.8000 _refine.pdbx_solvent_shrinkage_radii 0.8000 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.pdbx_starting_model 'PDB ENTRY 3ISB' _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD' _refine.pdbx_stereochem_target_val_spec_case ? _refine.overall_FOM_work_R_set ? _refine.B_iso_max 67.500 _refine.B_iso_min 9.980 _refine.pdbx_overall_phase_error ? _refine.occupancy_max 1.000 _refine.occupancy_min 1.000 _refine.pdbx_ls_sigma_I ? _refine.ls_redundancy_reflns_obs ? _refine.ls_R_factor_R_free_error_details ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.overall_FOM_free_R_set ? _refine.pdbx_diffrn_id 1 _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 2543 _refine_hist.pdbx_number_atoms_nucleic_acid 633 _refine_hist.pdbx_number_atoms_ligand 2 _refine_hist.number_atoms_solvent 72 _refine_hist.number_atoms_total 3250 _refine_hist.d_res_high 2.2700 _refine_hist.d_res_low 19.8300 # loop_ _refine_ls_restr.type _refine_ls_restr.number _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.pdbx_restraint_function _refine_ls_restr.pdbx_refine_id r_bond_refined_d 3297 0.012 0.018 ? ? 'X-RAY DIFFRACTION' r_bond_other_d 2864 0.001 0.020 ? ? 'X-RAY DIFFRACTION' r_angle_refined_deg 4568 1.651 1.794 ? ? 'X-RAY DIFFRACTION' r_angle_other_deg 6629 1.148 3.000 ? ? 'X-RAY DIFFRACTION' r_dihedral_angle_1_deg 316 5.830 5.000 ? ? 'X-RAY DIFFRACTION' r_dihedral_angle_2_deg 120 37.116 24.000 ? ? 'X-RAY DIFFRACTION' r_dihedral_angle_3_deg 489 16.947 15.000 ? ? 'X-RAY DIFFRACTION' r_dihedral_angle_4_deg 18 16.637 15.000 ? ? 'X-RAY DIFFRACTION' r_chiral_restr 474 0.092 0.200 ? ? 'X-RAY DIFFRACTION' r_gen_planes_refined 3260 0.008 0.020 ? ? 'X-RAY DIFFRACTION' r_gen_planes_other 741 0.001 0.020 ? ? 'X-RAY DIFFRACTION' r_mcbond_it 1273 1.756 2.680 ? ? 'X-RAY DIFFRACTION' r_mcbond_other 1272 1.745 2.679 ? ? 'X-RAY DIFFRACTION' r_mcangle_it 1586 2.731 4.009 ? ? 'X-RAY DIFFRACTION' # _refine_ls_shell.d_res_high 2.2710 _refine_ls_shell.d_res_low 2.3300 _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.percent_reflns_obs 88.3400 _refine_ls_shell.number_reflns_R_work 1287 _refine_ls_shell.R_factor_all ? _refine_ls_shell.R_factor_R_work 0.2750 _refine_ls_shell.R_factor_R_free 0.3910 _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.number_reflns_R_free 61 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.number_reflns_all 1348 _refine_ls_shell.number_reflns_obs ? _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' # _struct.entry_id 4M2Y _struct.title 'Structure of human DNA polymerase beta complexed with 8-BrG as the template base in a 1-nucleotide gapped DNA' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 4M2Y _struct_keywords.pdbx_keywords TRANSFERASE/DNA _struct_keywords.text 'promutagenic 8-halogenated G insertion, polymerase -DNA complex, base excision repair, TRANSFERASE-DNA complex' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? D N N 4 ? E N N 5 ? F N N 5 ? G N N 6 ? H N N 6 ? I N N 6 ? J N N 6 ? # _struct_biol.id 1 _struct_biol.details ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 ASN A 2 ? VAL A 19 ? ASN A 12 VAL A 29 1 ? 18 HELX_P HELX_P2 2 ALA A 22 ? LYS A 38 ? ALA A 32 LYS A 48 1 ? 17 HELX_P HELX_P3 3 SER A 45 ? LYS A 51 ? SER A 55 LYS A 61 1 ? 7 HELX_P HELX_P4 4 GLY A 56 ? GLY A 70 ? GLY A 66 GLY A 80 1 ? 15 HELX_P HELX_P5 5 LEU A 72 ? ASP A 81 ? LEU A 82 ASP A 91 1 ? 10 HELX_P HELX_P6 6 ASP A 81 ? THR A 91 ? ASP A 91 THR A 101 1 ? 11 HELX_P HELX_P7 7 GLY A 97 ? GLU A 107 ? GLY A 107 GLU A 117 1 ? 11 HELX_P HELX_P8 8 THR A 111 ? LYS A 117 ? THR A 121 LYS A 127 1 ? 7 HELX_P HELX_P9 9 ASN A 118 ? LEU A 122 ? ASN A 128 LEU A 132 5 ? 5 HELX_P HELX_P10 10 ASN A 123 ? TYR A 132 ? ASN A 133 TYR A 142 1 ? 10 HELX_P HELX_P11 11 TYR A 132 ? GLU A 137 ? TYR A 142 GLU A 147 1 ? 6 HELX_P HELX_P12 12 ARG A 142 ? ASP A 160 ? ARG A 152 ASP A 170 1 ? 19 HELX_P HELX_P13 13 CYS A 168 ? ARG A 173 ? CYS A 178 ARG A 183 1 ? 6 HELX_P HELX_P14 14 LEU A 200 ? VAL A 211 ? LEU A 210 VAL A 221 1 ? 12 HELX_P HELX_P15 15 PRO A 251 ? ASP A 253 ? PRO A 261 ASP A 263 5 ? 3 HELX_P HELX_P16 16 GLN A 254 ? GLY A 264 ? GLN A 264 GLY A 274 1 ? 11 HELX_P HELX_P17 17 SER A 265 ? LYS A 279 ? SER A 275 LYS A 289 1 ? 15 HELX_P HELX_P18 18 SER A 305 ? ILE A 313 ? SER A 315 ILE A 323 1 ? 9 HELX_P HELX_P19 19 GLU A 319 ? ARG A 323 ? GLU A 329 ARG A 333 5 ? 5 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role covale1 covale both ? B DC 5 "O3'" ? ? ? 1_555 B BGM 6 P ? ? T DC 5 T BGM 6 1_555 ? ? ? ? ? ? ? 1.623 ? ? covale2 covale both ? B BGM 6 "O3'" ? ? ? 1_555 B DT 7 P ? ? T BGM 6 T DT 7 1_555 ? ? ? ? ? ? ? 1.613 ? ? metalc1 metalc ? ? A LYS 50 O ? ? ? 1_555 F NA . NA ? ? A LYS 60 A NA 402 1_555 ? ? ? ? ? ? ? 2.284 ? ? metalc2 metalc ? ? A LEU 52 O ? ? ? 1_555 F NA . NA ? ? A LEU 62 A NA 402 1_555 ? ? ? ? ? ? ? 2.690 ? ? metalc3 metalc ? ? A VAL 55 O ? ? ? 1_555 F NA . NA ? ? A VAL 65 A NA 402 1_555 ? ? ? ? ? ? ? 2.366 ? ? metalc4 metalc ? ? A THR 91 O ? ? ? 1_555 E NA . NA ? ? A THR 101 A NA 401 1_555 ? ? ? ? ? ? ? 2.262 ? ? metalc5 metalc ? ? A VAL 93 O ? ? ? 1_555 E NA . NA ? ? A VAL 103 A NA 401 1_555 ? ? ? ? ? ? ? 2.296 ? ? metalc6 metalc ? ? A ILE 96 O ? ? ? 1_555 E NA . NA ? ? A ILE 106 A NA 401 1_555 ? ? ? ? ? ? ? 2.292 ? ? metalc7 metalc ? ? E NA . NA ? ? ? 1_555 C DG 9 OP1 ? ? A NA 401 P DG 9 1_555 ? ? ? ? ? ? ? 2.341 ? ? metalc8 metalc ? ? E NA . NA ? ? ? 1_555 I HOH . O ? ? A NA 401 P HOH 101 1_555 ? ? ? ? ? ? ? 2.542 ? ? metalc9 metalc ? ? F NA . NA ? ? ? 1_555 D DC 3 OP1 ? ? A NA 402 D DC 3 1_555 ? ? ? ? ? ? ? 2.621 ? ? hydrog1 hydrog ? ? B DC 1 N3 ? ? ? 1_555 D DG 5 N1 ? ? T DC 1 D DG 5 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog2 hydrog ? ? B DC 1 N4 ? ? ? 1_555 D DG 5 O6 ? ? T DC 1 D DG 5 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog3 hydrog ? ? B DC 1 O2 ? ? ? 1_555 D DG 5 N2 ? ? T DC 1 D DG 5 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog4 hydrog ? ? B DC 2 N3 ? ? ? 1_555 D DG 4 N1 ? ? T DC 2 D DG 4 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog5 hydrog ? ? B DC 2 N4 ? ? ? 1_555 D DG 4 O6 ? ? T DC 2 D DG 4 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog6 hydrog ? ? B DC 2 O2 ? ? ? 1_555 D DG 4 N2 ? ? T DC 2 D DG 4 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog7 hydrog ? ? B DG 3 N1 ? ? ? 1_555 D DC 3 N3 ? ? T DG 3 D DC 3 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog8 hydrog ? ? B DG 3 N2 ? ? ? 1_555 D DC 3 O2 ? ? T DG 3 D DC 3 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog9 hydrog ? ? B DG 3 O6 ? ? ? 1_555 D DC 3 N4 ? ? T DG 3 D DC 3 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog10 hydrog ? ? B DA 4 N1 ? ? ? 1_555 D DT 2 N3 ? ? T DA 4 D DT 2 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog11 hydrog ? ? B DA 4 N6 ? ? ? 1_555 D DT 2 O4 ? ? T DA 4 D DT 2 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog12 hydrog ? ? B DC 5 N3 ? ? ? 1_555 D DG 1 N1 ? ? T DC 5 D DG 1 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog13 hydrog ? ? B DC 5 N4 ? ? ? 1_555 D DG 1 O6 ? ? T DC 5 D DG 1 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog14 hydrog ? ? B DC 5 O2 ? ? ? 1_555 D DG 1 N2 ? ? T DC 5 D DG 1 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog15 hydrog ? ? B DT 7 N3 ? ? ? 1_555 C DA 10 N1 ? ? T DT 7 P DA 10 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog16 hydrog ? ? B DT 7 O4 ? ? ? 1_555 C DA 10 N6 ? ? T DT 7 P DA 10 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog17 hydrog ? ? B DC 8 N3 ? ? ? 1_555 C DG 9 N1 ? ? T DC 8 P DG 9 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog18 hydrog ? ? B DC 8 N4 ? ? ? 1_555 C DG 9 O6 ? ? T DC 8 P DG 9 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog19 hydrog ? ? B DC 8 O2 ? ? ? 1_555 C DG 9 N2 ? ? T DC 8 P DG 9 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog20 hydrog ? ? B DG 9 N1 ? ? ? 1_555 C DC 8 N3 ? ? T DG 9 P DC 8 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog21 hydrog ? ? B DG 9 N2 ? ? ? 1_555 C DC 8 O2 ? ? T DG 9 P DC 8 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog22 hydrog ? ? B DG 9 O6 ? ? ? 1_555 C DC 8 N4 ? ? T DG 9 P DC 8 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog23 hydrog ? ? B DC 10 N3 ? ? ? 1_555 C DG 7 N1 ? ? T DC 10 P DG 7 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog24 hydrog ? ? B DC 10 N4 ? ? ? 1_555 C DG 7 O6 ? ? T DC 10 P DG 7 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog25 hydrog ? ? B DC 10 O2 ? ? ? 1_555 C DG 7 N2 ? ? T DC 10 P DG 7 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog26 hydrog ? ? B DA 11 N1 ? ? ? 1_555 C DT 6 N3 ? ? T DA 11 P DT 6 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog27 hydrog ? ? B DA 11 N6 ? ? ? 1_555 C DT 6 O4 ? ? T DA 11 P DT 6 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog28 hydrog ? ? B DT 12 N3 ? ? ? 1_555 C DA 5 N1 ? ? T DT 12 P DA 5 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog29 hydrog ? ? B DT 12 O4 ? ? ? 1_555 C DA 5 N6 ? ? T DT 12 P DA 5 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog30 hydrog ? ? B DC 13 N3 ? ? ? 1_555 C DG 4 N1 ? ? T DC 13 P DG 4 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog31 hydrog ? ? B DC 13 N4 ? ? ? 1_555 C DG 4 O6 ? ? T DC 13 P DG 4 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog32 hydrog ? ? B DC 13 O2 ? ? ? 1_555 C DG 4 N2 ? ? T DC 13 P DG 4 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog33 hydrog ? ? B DA 14 N1 ? ? ? 1_555 C DT 3 N3 ? ? T DA 14 P DT 3 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog34 hydrog ? ? B DA 14 N6 ? ? ? 1_555 C DT 3 O4 ? ? T DA 14 P DT 3 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog35 hydrog ? ? B DG 15 N1 ? ? ? 1_555 C DC 2 N3 ? ? T DG 15 P DC 2 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog36 hydrog ? ? B DG 15 N2 ? ? ? 1_555 C DC 2 O2 ? ? T DG 15 P DC 2 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog37 hydrog ? ? B DG 15 O6 ? ? ? 1_555 C DC 2 N4 ? ? T DG 15 P DC 2 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog38 hydrog ? ? B DC 16 N3 ? ? ? 1_555 C DG 1 N1 ? ? T DC 16 P DG 1 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog39 hydrog ? ? B DC 16 N4 ? ? ? 1_555 C DG 1 O6 ? ? T DC 16 P DG 1 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog40 hydrog ? ? B DC 16 O2 ? ? ? 1_555 C DG 1 N2 ? ? T DC 16 P DG 1 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference covale ? ? metalc ? ? hydrog ? ? # _struct_mon_prot_cis.pdbx_id 1 _struct_mon_prot_cis.label_comp_id GLY _struct_mon_prot_cis.label_seq_id 264 _struct_mon_prot_cis.label_asym_id A _struct_mon_prot_cis.label_alt_id . _struct_mon_prot_cis.pdbx_PDB_ins_code ? _struct_mon_prot_cis.auth_comp_id GLY _struct_mon_prot_cis.auth_seq_id 274 _struct_mon_prot_cis.auth_asym_id A _struct_mon_prot_cis.pdbx_label_comp_id_2 SER _struct_mon_prot_cis.pdbx_label_seq_id_2 265 _struct_mon_prot_cis.pdbx_label_asym_id_2 A _struct_mon_prot_cis.pdbx_PDB_ins_code_2 ? _struct_mon_prot_cis.pdbx_auth_comp_id_2 SER _struct_mon_prot_cis.pdbx_auth_seq_id_2 275 _struct_mon_prot_cis.pdbx_auth_asym_id_2 A _struct_mon_prot_cis.pdbx_PDB_model_num 1 _struct_mon_prot_cis.pdbx_omega_angle -8.48 # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details A ? 2 ? B ? 5 ? C ? 2 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel B 1 2 ? anti-parallel B 2 3 ? parallel B 3 4 ? anti-parallel B 4 5 ? anti-parallel C 1 2 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 ILE A 140 ? PRO A 141 ? ILE A 150 PRO A 151 A 2 SER A 177 ? SER A 178 ? SER A 187 SER A 188 B 1 ILE A 164 ? VAL A 167 ? ILE A 174 VAL A 177 B 2 MET A 181 ? THR A 186 ? MET A 191 THR A 196 B 3 ARG A 243 ? LEU A 249 ? ARG A 253 LEU A 259 B 4 LYS A 224 ? CYS A 229 ? LYS A 234 CYS A 239 B 5 ILE A 214 ? LYS A 220 ? ILE A 224 LYS A 230 C 1 PHE A 281 ? ILE A 283 ? PHE A 291 ILE A 293 C 2 ILE A 288 ? PRO A 290 ? ILE A 298 PRO A 300 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 N ILE A 140 ? N ILE A 150 O SER A 178 ? O SER A 188 B 1 2 N THR A 166 ? N THR A 176 O LEU A 184 ? O LEU A 194 B 2 3 N LEU A 185 ? N LEU A 195 O ARG A 248 ? O ARG A 258 B 3 4 O ARG A 243 ? O ARG A 253 N CYS A 229 ? N CYS A 239 B 4 5 O MET A 226 ? O MET A 236 N SER A 219 ? N SER A 229 C 1 2 N THR A 282 ? N THR A 292 O ARG A 289 ? O ARG A 299 # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software A NA 401 ? 5 'BINDING SITE FOR RESIDUE NA A 401' AC2 Software A NA 402 ? 4 'BINDING SITE FOR RESIDUE NA A 402' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 5 THR A 91 ? THR A 101 . ? 1_555 ? 2 AC1 5 VAL A 93 ? VAL A 103 . ? 1_555 ? 3 AC1 5 ILE A 96 ? ILE A 106 . ? 1_555 ? 4 AC1 5 DG C 9 ? DG P 9 . ? 1_555 ? 5 AC1 5 HOH I . ? HOH P 101 . ? 1_555 ? 6 AC2 4 LYS A 50 ? LYS A 60 . ? 1_555 ? 7 AC2 4 LEU A 52 ? LEU A 62 . ? 1_555 ? 8 AC2 4 VAL A 55 ? VAL A 65 . ? 1_555 ? 9 AC2 4 DC D 3 ? DC D 3 . ? 1_555 ? # _atom_sites.entry_id 4M2Y _atom_sites.fract_transf_matrix[1][1] 0.018330 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.005075 _atom_sites.fract_transf_matrix[2][1] -0.000000 _atom_sites.fract_transf_matrix[2][2] 0.012615 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] -0.000000 _atom_sites.fract_transf_matrix[3][3] 0.018895 _atom_sites.fract_transf_vector[1] 0.000000 _atom_sites.fract_transf_vector[2] 0.000000 _atom_sites.fract_transf_vector[3] 0.000000 # loop_ _atom_type.symbol BR C N NA O P S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 LEU 1 11 11 LEU LEU A . n A 1 2 ASN 2 12 12 ASN ASN A . n A 1 3 GLY 3 13 13 GLY GLY A . n A 1 4 GLY 4 14 14 GLY GLY A . n A 1 5 ILE 5 15 15 ILE ILE A . n A 1 6 THR 6 16 16 THR THR A . n A 1 7 ASP 7 17 17 ASP ASP A . n A 1 8 MET 8 18 18 MET MET A . n A 1 9 LEU 9 19 19 LEU LEU A . n A 1 10 THR 10 20 20 THR THR A . n A 1 11 GLU 11 21 21 GLU GLU A . n A 1 12 LEU 12 22 22 LEU LEU A . n A 1 13 ALA 13 23 23 ALA ALA A . n A 1 14 ASN 14 24 24 ASN ASN A . n A 1 15 PHE 15 25 25 PHE PHE A . n A 1 16 GLU 16 26 26 GLU GLU A . n A 1 17 LYS 17 27 27 LYS LYS A . n A 1 18 ASN 18 28 28 ASN ASN A . n A 1 19 VAL 19 29 29 VAL VAL A . n A 1 20 SER 20 30 30 SER SER A . n A 1 21 GLN 21 31 31 GLN GLN A . n A 1 22 ALA 22 32 32 ALA ALA A . n A 1 23 ILE 23 33 33 ILE ILE A . n A 1 24 HIS 24 34 34 HIS HIS A . n A 1 25 LYS 25 35 35 LYS LYS A . n A 1 26 TYR 26 36 36 TYR TYR A . n A 1 27 ASN 27 37 37 ASN ASN A . n A 1 28 ALA 28 38 38 ALA ALA A . n A 1 29 TYR 29 39 39 TYR TYR A . n A 1 30 ARG 30 40 40 ARG ARG A . n A 1 31 LYS 31 41 41 LYS LYS A . n A 1 32 ALA 32 42 42 ALA ALA A . n A 1 33 ALA 33 43 43 ALA ALA A . n A 1 34 SER 34 44 44 SER SER A . n A 1 35 VAL 35 45 45 VAL VAL A . n A 1 36 ILE 36 46 46 ILE ILE A . n A 1 37 ALA 37 47 47 ALA ALA A . n A 1 38 LYS 38 48 48 LYS LYS A . n A 1 39 TYR 39 49 49 TYR TYR A . n A 1 40 PRO 40 50 50 PRO PRO A . n A 1 41 HIS 41 51 51 HIS HIS A . n A 1 42 LYS 42 52 52 LYS LYS A . n A 1 43 ILE 43 53 53 ILE ILE A . n A 1 44 LYS 44 54 54 LYS LYS A . n A 1 45 SER 45 55 55 SER SER A . n A 1 46 GLY 46 56 56 GLY GLY A . n A 1 47 ALA 47 57 57 ALA ALA A . n A 1 48 GLU 48 58 58 GLU GLU A . n A 1 49 ALA 49 59 59 ALA ALA A . n A 1 50 LYS 50 60 60 LYS LYS A . n A 1 51 LYS 51 61 61 LYS LYS A . n A 1 52 LEU 52 62 62 LEU LEU A . n A 1 53 PRO 53 63 63 PRO PRO A . n A 1 54 GLY 54 64 64 GLY GLY A . n A 1 55 VAL 55 65 65 VAL VAL A . n A 1 56 GLY 56 66 66 GLY GLY A . n A 1 57 THR 57 67 67 THR THR A . n A 1 58 LYS 58 68 68 LYS LYS A . n A 1 59 ILE 59 69 69 ILE ILE A . n A 1 60 ALA 60 70 70 ALA ALA A . n A 1 61 GLU 61 71 71 GLU GLU A . n A 1 62 LYS 62 72 72 LYS LYS A . n A 1 63 ILE 63 73 73 ILE ILE A . n A 1 64 ASP 64 74 74 ASP ASP A . n A 1 65 GLU 65 75 75 GLU GLU A . n A 1 66 PHE 66 76 76 PHE PHE A . n A 1 67 LEU 67 77 77 LEU LEU A . n A 1 68 ALA 68 78 78 ALA ALA A . n A 1 69 THR 69 79 79 THR THR A . n A 1 70 GLY 70 80 80 GLY GLY A . n A 1 71 LYS 71 81 81 LYS LYS A . n A 1 72 LEU 72 82 82 LEU LEU A . n A 1 73 ARG 73 83 83 ARG ARG A . n A 1 74 LYS 74 84 84 LYS LYS A . n A 1 75 LEU 75 85 85 LEU LEU A . n A 1 76 GLU 76 86 86 GLU GLU A . n A 1 77 LYS 77 87 87 LYS LYS A . n A 1 78 ILE 78 88 88 ILE ILE A . n A 1 79 ARG 79 89 89 ARG ARG A . n A 1 80 GLN 80 90 90 GLN GLN A . n A 1 81 ASP 81 91 91 ASP ASP A . n A 1 82 ASP 82 92 92 ASP ASP A . n A 1 83 THR 83 93 93 THR THR A . n A 1 84 SER 84 94 94 SER SER A . n A 1 85 SER 85 95 95 SER SER A . n A 1 86 SER 86 96 96 SER SER A . n A 1 87 ILE 87 97 97 ILE ILE A . n A 1 88 ASN 88 98 98 ASN ASN A . n A 1 89 PHE 89 99 99 PHE PHE A . n A 1 90 LEU 90 100 100 LEU LEU A . n A 1 91 THR 91 101 101 THR THR A . n A 1 92 ARG 92 102 102 ARG ARG A . n A 1 93 VAL 93 103 103 VAL VAL A . n A 1 94 SER 94 104 104 SER SER A . n A 1 95 GLY 95 105 105 GLY GLY A . n A 1 96 ILE 96 106 106 ILE ILE A . n A 1 97 GLY 97 107 107 GLY GLY A . n A 1 98 PRO 98 108 108 PRO PRO A . n A 1 99 SER 99 109 109 SER SER A . n A 1 100 ALA 100 110 110 ALA ALA A . n A 1 101 ALA 101 111 111 ALA ALA A . n A 1 102 ARG 102 112 112 ARG ARG A . n A 1 103 LYS 103 113 113 LYS LYS A . n A 1 104 PHE 104 114 114 PHE PHE A . n A 1 105 VAL 105 115 115 VAL VAL A . n A 1 106 ASP 106 116 116 ASP ASP A . n A 1 107 GLU 107 117 117 GLU GLU A . n A 1 108 GLY 108 118 118 GLY GLY A . n A 1 109 ILE 109 119 119 ILE ILE A . n A 1 110 LYS 110 120 120 LYS LYS A . n A 1 111 THR 111 121 121 THR THR A . n A 1 112 LEU 112 122 122 LEU LEU A . n A 1 113 GLU 113 123 123 GLU GLU A . n A 1 114 ASP 114 124 124 ASP ASP A . n A 1 115 LEU 115 125 125 LEU LEU A . n A 1 116 ARG 116 126 126 ARG ARG A . n A 1 117 LYS 117 127 127 LYS LYS A . n A 1 118 ASN 118 128 128 ASN ASN A . n A 1 119 GLU 119 129 129 GLU GLU A . n A 1 120 ASP 120 130 130 ASP ASP A . n A 1 121 LYS 121 131 131 LYS LYS A . n A 1 122 LEU 122 132 132 LEU LEU A . n A 1 123 ASN 123 133 133 ASN ASN A . n A 1 124 HIS 124 134 134 HIS HIS A . n A 1 125 HIS 125 135 135 HIS HIS A . n A 1 126 GLN 126 136 136 GLN GLN A . n A 1 127 ARG 127 137 137 ARG ARG A . n A 1 128 ILE 128 138 138 ILE ILE A . n A 1 129 GLY 129 139 139 GLY GLY A . n A 1 130 LEU 130 140 140 LEU LEU A . n A 1 131 LYS 131 141 141 LYS LYS A . n A 1 132 TYR 132 142 142 TYR TYR A . n A 1 133 PHE 133 143 143 PHE PHE A . n A 1 134 GLY 134 144 144 GLY GLY A . n A 1 135 ASP 135 145 145 ASP ASP A . n A 1 136 PHE 136 146 146 PHE PHE A . n A 1 137 GLU 137 147 147 GLU GLU A . n A 1 138 LYS 138 148 148 LYS LYS A . n A 1 139 ARG 139 149 149 ARG ARG A . n A 1 140 ILE 140 150 150 ILE ILE A . n A 1 141 PRO 141 151 151 PRO PRO A . n A 1 142 ARG 142 152 152 ARG ARG A . n A 1 143 GLU 143 153 153 GLU GLU A . n A 1 144 GLU 144 154 154 GLU GLU A . n A 1 145 MET 145 155 155 MET MET A . n A 1 146 LEU 146 156 156 LEU LEU A . n A 1 147 GLN 147 157 157 GLN GLN A . n A 1 148 MET 148 158 158 MET MET A . n A 1 149 GLN 149 159 159 GLN GLN A . n A 1 150 ASP 150 160 160 ASP ASP A . n A 1 151 ILE 151 161 161 ILE ILE A . n A 1 152 VAL 152 162 162 VAL VAL A . n A 1 153 LEU 153 163 163 LEU LEU A . n A 1 154 ASN 154 164 164 ASN ASN A . n A 1 155 GLU 155 165 165 GLU GLU A . n A 1 156 VAL 156 166 166 VAL VAL A . n A 1 157 LYS 157 167 167 LYS LYS A . n A 1 158 LYS 158 168 168 LYS LYS A . n A 1 159 VAL 159 169 169 VAL VAL A . n A 1 160 ASP 160 170 170 ASP ASP A . n A 1 161 SER 161 171 171 SER SER A . n A 1 162 GLU 162 172 172 GLU GLU A . n A 1 163 TYR 163 173 173 TYR TYR A . n A 1 164 ILE 164 174 174 ILE ILE A . n A 1 165 ALA 165 175 175 ALA ALA A . n A 1 166 THR 166 176 176 THR THR A . n A 1 167 VAL 167 177 177 VAL VAL A . n A 1 168 CYS 168 178 178 CYS CYS A . n A 1 169 GLY 169 179 179 GLY GLY A . n A 1 170 SER 170 180 180 SER SER A . n A 1 171 PHE 171 181 181 PHE PHE A . n A 1 172 ARG 172 182 182 ARG ARG A . n A 1 173 ARG 173 183 183 ARG ARG A . n A 1 174 GLY 174 184 184 GLY GLY A . n A 1 175 ALA 175 185 185 ALA ALA A . n A 1 176 GLU 176 186 186 GLU GLU A . n A 1 177 SER 177 187 187 SER SER A . n A 1 178 SER 178 188 188 SER SER A . n A 1 179 GLY 179 189 189 GLY GLY A . n A 1 180 ASP 180 190 190 ASP ASP A . n A 1 181 MET 181 191 191 MET MET A . n A 1 182 ASP 182 192 192 ASP ASP A . n A 1 183 VAL 183 193 193 VAL VAL A . n A 1 184 LEU 184 194 194 LEU LEU A . n A 1 185 LEU 185 195 195 LEU LEU A . n A 1 186 THR 186 196 196 THR THR A . n A 1 187 HIS 187 197 197 HIS HIS A . n A 1 188 PRO 188 198 198 PRO PRO A . n A 1 189 SER 189 199 199 SER SER A . n A 1 190 PHE 190 200 200 PHE PHE A . n A 1 191 THR 191 201 201 THR THR A . n A 1 192 SER 192 202 202 SER SER A . n A 1 193 GLU 193 203 203 GLU GLU A . n A 1 194 SER 194 204 204 SER SER A . n A 1 195 THR 195 205 ? ? ? A . n A 1 196 LYS 196 206 ? ? ? A . n A 1 197 GLN 197 207 ? ? ? A . n A 1 198 PRO 198 208 ? ? ? A . n A 1 199 LYS 199 209 209 LYS LYS A . n A 1 200 LEU 200 210 210 LEU LEU A . n A 1 201 LEU 201 211 211 LEU LEU A . n A 1 202 HIS 202 212 212 HIS HIS A . n A 1 203 GLN 203 213 213 GLN GLN A . n A 1 204 VAL 204 214 214 VAL VAL A . n A 1 205 VAL 205 215 215 VAL VAL A . n A 1 206 GLU 206 216 216 GLU GLU A . n A 1 207 GLN 207 217 217 GLN GLN A . n A 1 208 LEU 208 218 218 LEU LEU A . n A 1 209 GLN 209 219 219 GLN GLN A . n A 1 210 LYS 210 220 220 LYS LYS A . n A 1 211 VAL 211 221 221 VAL VAL A . n A 1 212 HIS 212 222 222 HIS HIS A . n A 1 213 PHE 213 223 223 PHE PHE A . n A 1 214 ILE 214 224 224 ILE ILE A . n A 1 215 THR 215 225 225 THR THR A . n A 1 216 ASP 216 226 226 ASP ASP A . n A 1 217 THR 217 227 227 THR THR A . n A 1 218 LEU 218 228 228 LEU LEU A . n A 1 219 SER 219 229 229 SER SER A . n A 1 220 LYS 220 230 230 LYS LYS A . n A 1 221 GLY 221 231 231 GLY GLY A . n A 1 222 GLU 222 232 232 GLU GLU A . n A 1 223 THR 223 233 233 THR THR A . n A 1 224 LYS 224 234 234 LYS LYS A . n A 1 225 PHE 225 235 235 PHE PHE A . n A 1 226 MET 226 236 236 MET MET A . n A 1 227 GLY 227 237 237 GLY GLY A . n A 1 228 VAL 228 238 238 VAL VAL A . n A 1 229 CYS 229 239 239 CYS CYS A . n A 1 230 GLN 230 240 240 GLN GLN A . n A 1 231 LEU 231 241 241 LEU LEU A . n A 1 232 PRO 232 242 242 PRO PRO A . n A 1 233 SER 233 243 243 SER SER A . n A 1 234 LYS 234 244 ? ? ? A . n A 1 235 ASN 235 245 ? ? ? A . n A 1 236 ASP 236 246 246 ASP ASP A . n A 1 237 GLU 237 247 247 GLU GLU A . n A 1 238 LYS 238 248 248 LYS LYS A . n A 1 239 GLU 239 249 249 GLU GLU A . n A 1 240 TYR 240 250 250 TYR TYR A . n A 1 241 PRO 241 251 251 PRO PRO A . n A 1 242 HIS 242 252 252 HIS HIS A . n A 1 243 ARG 243 253 253 ARG ARG A . n A 1 244 ARG 244 254 254 ARG ARG A . n A 1 245 ILE 245 255 255 ILE ILE A . n A 1 246 ASP 246 256 256 ASP ASP A . n A 1 247 ILE 247 257 257 ILE ILE A . n A 1 248 ARG 248 258 258 ARG ARG A . n A 1 249 LEU 249 259 259 LEU LEU A . n A 1 250 ILE 250 260 260 ILE ILE A . n A 1 251 PRO 251 261 261 PRO PRO A . n A 1 252 LYS 252 262 262 LYS LYS A . n A 1 253 ASP 253 263 263 ASP ASP A . n A 1 254 GLN 254 264 264 GLN GLN A . n A 1 255 TYR 255 265 265 TYR TYR A . n A 1 256 TYR 256 266 266 TYR TYR A . n A 1 257 CYS 257 267 267 CYS CYS A . n A 1 258 GLY 258 268 268 GLY GLY A . n A 1 259 VAL 259 269 269 VAL VAL A . n A 1 260 LEU 260 270 270 LEU LEU A . n A 1 261 TYR 261 271 271 TYR TYR A . n A 1 262 PHE 262 272 272 PHE PHE A . n A 1 263 THR 263 273 273 THR THR A . n A 1 264 GLY 264 274 274 GLY GLY A . n A 1 265 SER 265 275 275 SER SER A . n A 1 266 ASP 266 276 276 ASP ASP A . n A 1 267 ILE 267 277 277 ILE ILE A . n A 1 268 PHE 268 278 278 PHE PHE A . n A 1 269 ASN 269 279 279 ASN ASN A . n A 1 270 LYS 270 280 280 LYS LYS A . n A 1 271 ASN 271 281 281 ASN ASN A . n A 1 272 MET 272 282 282 MET MET A . n A 1 273 ARG 273 283 283 ARG ARG A . n A 1 274 ALA 274 284 284 ALA ALA A . n A 1 275 HIS 275 285 285 HIS HIS A . n A 1 276 ALA 276 286 286 ALA ALA A . n A 1 277 LEU 277 287 287 LEU LEU A . n A 1 278 GLU 278 288 288 GLU GLU A . n A 1 279 LYS 279 289 289 LYS LYS A . n A 1 280 GLY 280 290 290 GLY GLY A . n A 1 281 PHE 281 291 291 PHE PHE A . n A 1 282 THR 282 292 292 THR THR A . n A 1 283 ILE 283 293 293 ILE ILE A . n A 1 284 ASN 284 294 294 ASN ASN A . n A 1 285 GLU 285 295 295 GLU GLU A . n A 1 286 TYR 286 296 296 TYR TYR A . n A 1 287 THR 287 297 297 THR THR A . n A 1 288 ILE 288 298 298 ILE ILE A . n A 1 289 ARG 289 299 299 ARG ARG A . n A 1 290 PRO 290 300 300 PRO PRO A . n A 1 291 LEU 291 301 301 LEU LEU A . n A 1 292 GLY 292 302 302 GLY GLY A . n A 1 293 VAL 293 303 303 VAL VAL A . n A 1 294 THR 294 304 304 THR THR A . n A 1 295 GLY 295 305 305 GLY GLY A . n A 1 296 VAL 296 306 306 VAL VAL A . n A 1 297 ALA 297 307 307 ALA ALA A . n A 1 298 GLY 298 308 308 GLY GLY A . n A 1 299 GLU 299 309 309 GLU GLU A . n A 1 300 PRO 300 310 310 PRO PRO A . n A 1 301 LEU 301 311 311 LEU LEU A . n A 1 302 PRO 302 312 312 PRO PRO A . n A 1 303 VAL 303 313 313 VAL VAL A . n A 1 304 ASP 304 314 314 ASP ASP A . n A 1 305 SER 305 315 315 SER SER A . n A 1 306 GLU 306 316 316 GLU GLU A . n A 1 307 LYS 307 317 317 LYS LYS A . n A 1 308 ASP 308 318 318 ASP ASP A . n A 1 309 ILE 309 319 319 ILE ILE A . n A 1 310 PHE 310 320 320 PHE PHE A . n A 1 311 ASP 311 321 321 ASP ASP A . n A 1 312 TYR 312 322 322 TYR TYR A . n A 1 313 ILE 313 323 323 ILE ILE A . n A 1 314 GLN 314 324 324 GLN GLN A . n A 1 315 TRP 315 325 325 TRP TRP A . n A 1 316 LYS 316 326 326 LYS LYS A . n A 1 317 TYR 317 327 327 TYR TYR A . n A 1 318 ARG 318 328 328 ARG ARG A . n A 1 319 GLU 319 329 329 GLU GLU A . n A 1 320 PRO 320 330 330 PRO PRO A . n A 1 321 LYS 321 331 331 LYS LYS A . n A 1 322 ASP 322 332 332 ASP ASP A . n A 1 323 ARG 323 333 333 ARG ARG A . n A 1 324 SER 324 334 334 SER SER A . n A 1 325 GLU 325 335 335 GLU GLU A . n B 2 1 DC 1 1 1 DC DC T . n B 2 2 DC 2 2 2 DC DC T . n B 2 3 DG 3 3 3 DG DG T . n B 2 4 DA 4 4 4 DA DA T . n B 2 5 DC 5 5 5 DC DC T . n B 2 6 BGM 6 6 6 BGM BGM T . n B 2 7 DT 7 7 7 DT DT T . n B 2 8 DC 8 8 8 DC DC T . n B 2 9 DG 9 9 9 DG DG T . n B 2 10 DC 10 10 10 DC DC T . n B 2 11 DA 11 11 11 DA DA T . n B 2 12 DT 12 12 12 DT DT T . n B 2 13 DC 13 13 13 DC DC T . n B 2 14 DA 14 14 14 DA DA T . n B 2 15 DG 15 15 15 DG DG T . n B 2 16 DC 16 16 16 DC DC T . n C 3 1 DG 1 1 1 DG DG P . n C 3 2 DC 2 2 2 DC DC P . n C 3 3 DT 3 3 3 DT DT P . n C 3 4 DG 4 4 4 DG DG P . n C 3 5 DA 5 5 5 DA DA P . n C 3 6 DT 6 6 6 DT DT P . n C 3 7 DG 7 7 7 DG DG P . n C 3 8 DC 8 8 8 DC DC P . n C 3 9 DG 9 9 9 DG DG P . n C 3 10 DA 10 10 10 DA DA P . n D 4 1 DG 1 1 1 DG DG D . n D 4 2 DT 2 2 2 DT DT D . n D 4 3 DC 3 3 3 DC DC D . n D 4 4 DG 4 4 4 DG DG D . n D 4 5 DG 5 5 5 DG DG D . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code E 5 NA 1 401 341 NA NA A . F 5 NA 1 402 342 NA NA A . G 6 HOH 1 501 1 HOH HOH A . G 6 HOH 2 502 2 HOH HOH A . G 6 HOH 3 503 4 HOH HOH A . G 6 HOH 4 504 5 HOH HOH A . G 6 HOH 5 505 8 HOH HOH A . G 6 HOH 6 506 9 HOH HOH A . G 6 HOH 7 507 10 HOH HOH A . G 6 HOH 8 508 11 HOH HOH A . G 6 HOH 9 509 12 HOH HOH A . G 6 HOH 10 510 13 HOH HOH A . G 6 HOH 11 511 14 HOH HOH A . G 6 HOH 12 512 17 HOH HOH A . G 6 HOH 13 513 18 HOH HOH A . G 6 HOH 14 514 19 HOH HOH A . G 6 HOH 15 515 20 HOH HOH A . G 6 HOH 16 516 21 HOH HOH A . G 6 HOH 17 517 22 HOH HOH A . G 6 HOH 18 518 23 HOH HOH A . G 6 HOH 19 519 24 HOH HOH A . G 6 HOH 20 520 25 HOH HOH A . G 6 HOH 21 521 26 HOH HOH A . G 6 HOH 22 522 27 HOH HOH A . G 6 HOH 23 523 29 HOH HOH A . G 6 HOH 24 524 30 HOH HOH A . G 6 HOH 25 525 33 HOH HOH A . G 6 HOH 26 526 36 HOH HOH A . G 6 HOH 27 527 37 HOH HOH A . G 6 HOH 28 528 39 HOH HOH A . G 6 HOH 29 529 42 HOH HOH A . G 6 HOH 30 530 43 HOH HOH A . G 6 HOH 31 531 44 HOH HOH A . G 6 HOH 32 532 45 HOH HOH A . G 6 HOH 33 533 47 HOH HOH A . G 6 HOH 34 534 48 HOH HOH A . G 6 HOH 35 535 49 HOH HOH A . G 6 HOH 36 536 50 HOH HOH A . G 6 HOH 37 537 53 HOH HOH A . G 6 HOH 38 538 56 HOH HOH A . G 6 HOH 39 539 57 HOH HOH A . G 6 HOH 40 540 61 HOH HOH A . G 6 HOH 41 541 63 HOH HOH A . G 6 HOH 42 542 67 HOH HOH A . G 6 HOH 43 543 68 HOH HOH A . G 6 HOH 44 544 69 HOH HOH A . G 6 HOH 45 545 71 HOH HOH A . G 6 HOH 46 546 72 HOH HOH A . G 6 HOH 47 547 73 HOH HOH A . G 6 HOH 48 548 74 HOH HOH A . G 6 HOH 49 549 75 HOH HOH A . G 6 HOH 50 550 77 HOH HOH A . G 6 HOH 51 551 78 HOH HOH A . G 6 HOH 52 552 79 HOH HOH A . G 6 HOH 53 553 81 HOH HOH A . G 6 HOH 54 554 3 HOH HOH A . G 6 HOH 55 555 54 HOH HOH A . H 6 HOH 1 101 6 HOH HOH T . H 6 HOH 2 102 16 HOH HOH T . H 6 HOH 3 103 28 HOH HOH T . H 6 HOH 4 104 32 HOH HOH T . H 6 HOH 5 105 34 HOH HOH T . H 6 HOH 6 106 35 HOH HOH T . H 6 HOH 7 107 38 HOH HOH T . H 6 HOH 8 108 41 HOH HOH T . H 6 HOH 9 109 64 HOH HOH T . H 6 HOH 10 110 65 HOH HOH T . I 6 HOH 1 101 7 HOH HOH P . I 6 HOH 2 102 15 HOH HOH P . I 6 HOH 3 103 31 HOH HOH P . I 6 HOH 4 104 40 HOH HOH P . I 6 HOH 5 105 46 HOH HOH P . J 6 HOH 1 101 58 HOH HOH D . J 6 HOH 2 102 59 HOH HOH D . # _pdbx_struct_mod_residue.id 1 _pdbx_struct_mod_residue.label_asym_id B _pdbx_struct_mod_residue.label_comp_id BGM _pdbx_struct_mod_residue.label_seq_id 6 _pdbx_struct_mod_residue.auth_asym_id T _pdbx_struct_mod_residue.auth_comp_id BGM _pdbx_struct_mod_residue.auth_seq_id 6 _pdbx_struct_mod_residue.PDB_ins_code ? _pdbx_struct_mod_residue.parent_comp_id DG _pdbx_struct_mod_residue.details ? # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 4380 ? 1 MORE -44 ? 1 'SSA (A^2)' 20990 ? # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_struct_conn_angle.id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_alt_id _pdbx_struct_conn_angle.ptnr1_label_asym_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr1_auth_atom_id _pdbx_struct_conn_angle.ptnr1_auth_asym_id _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_PDB_ins_code _pdbx_struct_conn_angle.ptnr1_symmetry _pdbx_struct_conn_angle.ptnr2_label_atom_id _pdbx_struct_conn_angle.ptnr2_label_alt_id _pdbx_struct_conn_angle.ptnr2_label_asym_id _pdbx_struct_conn_angle.ptnr2_label_comp_id _pdbx_struct_conn_angle.ptnr2_label_seq_id _pdbx_struct_conn_angle.ptnr2_auth_atom_id _pdbx_struct_conn_angle.ptnr2_auth_asym_id _pdbx_struct_conn_angle.ptnr2_auth_comp_id _pdbx_struct_conn_angle.ptnr2_auth_seq_id _pdbx_struct_conn_angle.ptnr2_PDB_ins_code _pdbx_struct_conn_angle.ptnr2_symmetry _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_alt_id _pdbx_struct_conn_angle.ptnr3_label_asym_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.ptnr3_auth_atom_id _pdbx_struct_conn_angle.ptnr3_auth_asym_id _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_PDB_ins_code _pdbx_struct_conn_angle.ptnr3_symmetry _pdbx_struct_conn_angle.value _pdbx_struct_conn_angle.value_esd 1 O ? A LYS 50 ? A LYS 60 ? 1_555 NA ? F NA . ? A NA 402 ? 1_555 O ? A LEU 52 ? A LEU 62 ? 1_555 85.3 ? 2 O ? A LYS 50 ? A LYS 60 ? 1_555 NA ? F NA . ? A NA 402 ? 1_555 O ? A VAL 55 ? A VAL 65 ? 1_555 90.3 ? 3 O ? A LEU 52 ? A LEU 62 ? 1_555 NA ? F NA . ? A NA 402 ? 1_555 O ? A VAL 55 ? A VAL 65 ? 1_555 93.0 ? 4 O ? A LYS 50 ? A LYS 60 ? 1_555 NA ? F NA . ? A NA 402 ? 1_555 OP1 ? D DC 3 ? D DC 3 ? 1_555 173.4 ? 5 O ? A LEU 52 ? A LEU 62 ? 1_555 NA ? F NA . ? A NA 402 ? 1_555 OP1 ? D DC 3 ? D DC 3 ? 1_555 90.5 ? 6 O ? A VAL 55 ? A VAL 65 ? 1_555 NA ? F NA . ? A NA 402 ? 1_555 OP1 ? D DC 3 ? D DC 3 ? 1_555 84.8 ? 7 O ? A THR 91 ? A THR 101 ? 1_555 NA ? E NA . ? A NA 401 ? 1_555 O ? A VAL 93 ? A VAL 103 ? 1_555 93.6 ? 8 O ? A THR 91 ? A THR 101 ? 1_555 NA ? E NA . ? A NA 401 ? 1_555 O ? A ILE 96 ? A ILE 106 ? 1_555 93.1 ? 9 O ? A VAL 93 ? A VAL 103 ? 1_555 NA ? E NA . ? A NA 401 ? 1_555 O ? A ILE 96 ? A ILE 106 ? 1_555 89.0 ? 10 O ? A THR 91 ? A THR 101 ? 1_555 NA ? E NA . ? A NA 401 ? 1_555 OP1 ? C DG 9 ? P DG 9 ? 1_555 162.8 ? 11 O ? A VAL 93 ? A VAL 103 ? 1_555 NA ? E NA . ? A NA 401 ? 1_555 OP1 ? C DG 9 ? P DG 9 ? 1_555 101.9 ? 12 O ? A ILE 96 ? A ILE 106 ? 1_555 NA ? E NA . ? A NA 401 ? 1_555 OP1 ? C DG 9 ? P DG 9 ? 1_555 94.6 ? 13 O ? A THR 91 ? A THR 101 ? 1_555 NA ? E NA . ? A NA 401 ? 1_555 O ? I HOH . ? P HOH 101 ? 1_555 91.3 ? 14 O ? A VAL 93 ? A VAL 103 ? 1_555 NA ? E NA . ? A NA 401 ? 1_555 O ? I HOH . ? P HOH 101 ? 1_555 91.2 ? 15 O ? A ILE 96 ? A ILE 106 ? 1_555 NA ? E NA . ? A NA 401 ? 1_555 O ? I HOH . ? P HOH 101 ? 1_555 175.5 ? 16 OP1 ? C DG 9 ? P DG 9 ? 1_555 NA ? E NA . ? A NA 401 ? 1_555 O ? I HOH . ? P HOH 101 ? 1_555 81.0 ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2014-01-22 2 'Structure model' 1 1 2014-02-12 3 'Structure model' 1 2 2014-03-19 4 'Structure model' 1 3 2023-09-20 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Database references' 2 3 'Structure model' 'Database references' 3 4 'Structure model' 'Data collection' 4 4 'Structure model' 'Database references' 5 4 'Structure model' 'Derived calculations' 6 4 'Structure model' 'Refinement description' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 4 'Structure model' chem_comp_atom 2 4 'Structure model' chem_comp_bond 3 4 'Structure model' database_2 4 4 'Structure model' pdbx_initial_refinement_model 5 4 'Structure model' pdbx_struct_conn_angle 6 4 'Structure model' struct_conn 7 4 'Structure model' struct_site # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 4 'Structure model' '_database_2.pdbx_DOI' 2 4 'Structure model' '_database_2.pdbx_database_accession' 3 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_asym_id' 4 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_comp_id' 5 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_seq_id' 6 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_asym_id' 7 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_atom_id' 8 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_comp_id' 9 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_seq_id' 10 4 'Structure model' '_pdbx_struct_conn_angle.ptnr2_auth_seq_id' 11 4 'Structure model' '_pdbx_struct_conn_angle.ptnr2_label_asym_id' 12 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_asym_id' 13 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_comp_id' 14 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_seq_id' 15 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_asym_id' 16 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_atom_id' 17 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_comp_id' 18 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_seq_id' 19 4 'Structure model' '_pdbx_struct_conn_angle.value' 20 4 'Structure model' '_struct_conn.pdbx_dist_value' 21 4 'Structure model' '_struct_conn.pdbx_leaving_atom_flag' 22 4 'Structure model' '_struct_conn.ptnr1_auth_asym_id' 23 4 'Structure model' '_struct_conn.ptnr1_auth_comp_id' 24 4 'Structure model' '_struct_conn.ptnr1_auth_seq_id' 25 4 'Structure model' '_struct_conn.ptnr1_label_asym_id' 26 4 'Structure model' '_struct_conn.ptnr1_label_atom_id' 27 4 'Structure model' '_struct_conn.ptnr1_label_comp_id' 28 4 'Structure model' '_struct_conn.ptnr1_label_seq_id' 29 4 'Structure model' '_struct_conn.ptnr2_auth_asym_id' 30 4 'Structure model' '_struct_conn.ptnr2_auth_comp_id' 31 4 'Structure model' '_struct_conn.ptnr2_auth_seq_id' 32 4 'Structure model' '_struct_conn.ptnr2_label_asym_id' 33 4 'Structure model' '_struct_conn.ptnr2_label_atom_id' 34 4 'Structure model' '_struct_conn.ptnr2_label_comp_id' 35 4 'Structure model' '_struct_conn.ptnr2_label_seq_id' 36 4 'Structure model' '_struct_site.pdbx_auth_asym_id' 37 4 'Structure model' '_struct_site.pdbx_auth_comp_id' 38 4 'Structure model' '_struct_site.pdbx_auth_seq_id' # loop_ _software.pdbx_ordinal _software.name _software.version _software.date _software.type _software.contact_author _software.contact_author_email _software.classification _software.location _software.language _software.citation_id 1 REFMAC 5.7.0032 ? program 'Garib N. Murshudov' garib@ysbl.york.ac.uk refinement http://www.ccp4.ac.uk/dist/html/refmac5.html Fortran_77 ? 2 PDB_EXTRACT 3.11 'April 22, 2011' package PDB deposit@deposit.rcsb.org 'data extraction' http://sw-tools.pdb.org/apps/PDB_EXTRACT/ C++ ? 3 StructureStudio . ? ? ? ? 'data collection' ? ? ? 4 HKL-2000 . ? ? ? ? 'data reduction' ? ? ? 5 HKL-2000 . ? ? ? ? 'data scaling' ? ? ? 6 MOLREP . ? ? ? ? phasing ? ? ? # _pdbx_validate_rmsd_bond.id 1 _pdbx_validate_rmsd_bond.PDB_model_num 1 _pdbx_validate_rmsd_bond.auth_atom_id_1 P _pdbx_validate_rmsd_bond.auth_asym_id_1 D _pdbx_validate_rmsd_bond.auth_comp_id_1 DG _pdbx_validate_rmsd_bond.auth_seq_id_1 1 _pdbx_validate_rmsd_bond.PDB_ins_code_1 ? _pdbx_validate_rmsd_bond.label_alt_id_1 ? _pdbx_validate_rmsd_bond.auth_atom_id_2 OP3 _pdbx_validate_rmsd_bond.auth_asym_id_2 D _pdbx_validate_rmsd_bond.auth_comp_id_2 DG _pdbx_validate_rmsd_bond.auth_seq_id_2 1 _pdbx_validate_rmsd_bond.PDB_ins_code_2 ? _pdbx_validate_rmsd_bond.label_alt_id_2 ? _pdbx_validate_rmsd_bond.bond_value 1.507 _pdbx_validate_rmsd_bond.bond_target_value 1.607 _pdbx_validate_rmsd_bond.bond_deviation -0.100 _pdbx_validate_rmsd_bond.bond_standard_deviation 0.012 _pdbx_validate_rmsd_bond.linker_flag N # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 "C5'" T DC 1 ? ? "C4'" T DC 1 ? ? "O4'" T DC 1 ? ? 118.03 109.80 8.23 1.10 N 2 1 "O5'" P DA 5 ? ? P P DA 5 ? ? OP1 P DA 5 ? ? 98.25 105.70 -7.45 0.90 N # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 PRO A 50 ? ? -88.34 40.22 2 1 CYS A 178 ? ? -107.52 -144.04 3 1 GLU A 247 ? ? -38.57 153.84 4 1 ASN A 294 ? ? -125.96 -166.78 # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 Y 1 A GLU 203 ? CG ? A GLU 193 CG 2 1 Y 1 A GLU 203 ? CD ? A GLU 193 CD 3 1 Y 1 A GLU 203 ? OE1 ? A GLU 193 OE1 4 1 Y 1 A GLU 203 ? OE2 ? A GLU 193 OE2 5 1 Y 1 A LYS 209 ? CG ? A LYS 199 CG 6 1 Y 1 A LYS 209 ? CD ? A LYS 199 CD 7 1 Y 1 A LYS 209 ? CE ? A LYS 199 CE 8 1 Y 1 A LYS 209 ? NZ ? A LYS 199 NZ 9 1 Y 1 A ASP 246 ? CG ? A ASP 236 CG 10 1 Y 1 A ASP 246 ? OD1 ? A ASP 236 OD1 11 1 Y 1 A ASP 246 ? OD2 ? A ASP 236 OD2 12 1 Y 1 A GLU 247 ? CG ? A GLU 237 CG 13 1 Y 1 A GLU 247 ? CD ? A GLU 237 CD 14 1 Y 1 A GLU 247 ? OE1 ? A GLU 237 OE1 15 1 Y 1 A GLU 247 ? OE2 ? A GLU 237 OE2 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A THR 205 ? A THR 195 2 1 Y 1 A LYS 206 ? A LYS 196 3 1 Y 1 A GLN 207 ? A GLN 197 4 1 Y 1 A PRO 208 ? A PRO 198 5 1 Y 1 A LYS 244 ? A LYS 234 6 1 Y 1 A ASN 245 ? A ASN 235 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal ALA N N N N 1 ALA CA C N S 2 ALA C C N N 3 ALA O O N N 4 ALA CB C N N 5 ALA OXT O N N 6 ALA H H N N 7 ALA H2 H N N 8 ALA HA H N N 9 ALA HB1 H N N 10 ALA HB2 H N N 11 ALA HB3 H N N 12 ALA HXT H N N 13 ARG N N N N 14 ARG CA C N S 15 ARG C C N N 16 ARG O O N N 17 ARG CB C N N 18 ARG CG C N N 19 ARG CD C N N 20 ARG NE N N N 21 ARG CZ C N N 22 ARG NH1 N N N 23 ARG NH2 N N N 24 ARG OXT O N N 25 ARG H H N N 26 ARG H2 H N N 27 ARG HA H N N 28 ARG HB2 H N N 29 ARG HB3 H N N 30 ARG HG2 H N N 31 ARG HG3 H N N 32 ARG HD2 H N N 33 ARG HD3 H N N 34 ARG HE H N N 35 ARG HH11 H N N 36 ARG HH12 H N N 37 ARG HH21 H N N 38 ARG HH22 H N N 39 ARG HXT H N N 40 ASN N N N N 41 ASN CA C N S 42 ASN C C N N 43 ASN O O N N 44 ASN CB C N N 45 ASN CG C N N 46 ASN OD1 O N N 47 ASN ND2 N N N 48 ASN OXT O N N 49 ASN H H N N 50 ASN H2 H N N 51 ASN HA H N N 52 ASN HB2 H N N 53 ASN HB3 H N N 54 ASN HD21 H N N 55 ASN HD22 H N N 56 ASN HXT H N N 57 ASP N N N N 58 ASP CA C N S 59 ASP C C N N 60 ASP O O N N 61 ASP CB C N N 62 ASP CG C N N 63 ASP OD1 O N N 64 ASP OD2 O N N 65 ASP OXT O N N 66 ASP H H N N 67 ASP H2 H N N 68 ASP HA H N N 69 ASP HB2 H N N 70 ASP HB3 H N N 71 ASP HD2 H N N 72 ASP HXT H N N 73 BGM P P N N 74 BGM OP1 O N N 75 BGM OP2 O N N 76 BGM "O5'" O N N 77 BGM "C5'" C N N 78 BGM "C4'" C N R 79 BGM "O4'" O N N 80 BGM "C1'" C N R 81 BGM N9 N Y N 82 BGM C8 C Y N 83 BGM N7 N Y N 84 BGM C5 C Y N 85 BGM C4 C Y N 86 BGM N3 N N N 87 BGM C2 C N N 88 BGM N2 N N N 89 BGM N1 N N N 90 BGM C6 C N N 91 BGM O6 O N N 92 BGM "C2'" C N N 93 BGM "C3'" C N S 94 BGM "O3'" O N N 95 BGM OP3 O N N 96 BGM BR BR N N 97 BGM HOP2 H N N 98 BGM "H5'" H N N 99 BGM "H5''" H N N 100 BGM "H4'" H N N 101 BGM "H1'" H N N 102 BGM H21 H N N 103 BGM H22 H N N 104 BGM H1 H N N 105 BGM "H2'" H N N 106 BGM "H2''" H N N 107 BGM "H3'" H N N 108 BGM "HO3'" H N N 109 BGM HOP3 H N N 110 CYS N N N N 111 CYS CA C N R 112 CYS C C N N 113 CYS O O N N 114 CYS CB C N N 115 CYS SG S N N 116 CYS OXT O N N 117 CYS H H N N 118 CYS H2 H N N 119 CYS HA H N N 120 CYS HB2 H N N 121 CYS HB3 H N N 122 CYS HG H N N 123 CYS HXT H N N 124 DA OP3 O N N 125 DA P P N N 126 DA OP1 O N N 127 DA OP2 O N N 128 DA "O5'" O N N 129 DA "C5'" C N N 130 DA "C4'" C N R 131 DA "O4'" O N N 132 DA "C3'" C N S 133 DA "O3'" O N N 134 DA "C2'" C N N 135 DA "C1'" C N R 136 DA N9 N Y N 137 DA C8 C Y N 138 DA N7 N Y N 139 DA C5 C Y N 140 DA C6 C Y N 141 DA N6 N N N 142 DA N1 N Y N 143 DA C2 C Y N 144 DA N3 N Y N 145 DA C4 C Y N 146 DA HOP3 H N N 147 DA HOP2 H N N 148 DA "H5'" H N N 149 DA "H5''" H N N 150 DA "H4'" H N N 151 DA "H3'" H N N 152 DA "HO3'" H N N 153 DA "H2'" H N N 154 DA "H2''" H N N 155 DA "H1'" H N N 156 DA H8 H N N 157 DA H61 H N N 158 DA H62 H N N 159 DA H2 H N N 160 DC OP3 O N N 161 DC P P N N 162 DC OP1 O N N 163 DC OP2 O N N 164 DC "O5'" O N N 165 DC "C5'" C N N 166 DC "C4'" C N R 167 DC "O4'" O N N 168 DC "C3'" C N S 169 DC "O3'" O N N 170 DC "C2'" C N N 171 DC "C1'" C N R 172 DC N1 N N N 173 DC C2 C N N 174 DC O2 O N N 175 DC N3 N N N 176 DC C4 C N N 177 DC N4 N N N 178 DC C5 C N N 179 DC C6 C N N 180 DC HOP3 H N N 181 DC HOP2 H N N 182 DC "H5'" H N N 183 DC "H5''" H N N 184 DC "H4'" H N N 185 DC "H3'" H N N 186 DC "HO3'" H N N 187 DC "H2'" H N N 188 DC "H2''" H N N 189 DC "H1'" H N N 190 DC H41 H N N 191 DC H42 H N N 192 DC H5 H N N 193 DC H6 H N N 194 DG OP3 O N N 195 DG P P N N 196 DG OP1 O N N 197 DG OP2 O N N 198 DG "O5'" O N N 199 DG "C5'" C N N 200 DG "C4'" C N R 201 DG "O4'" O N N 202 DG "C3'" C N S 203 DG "O3'" O N N 204 DG "C2'" C N N 205 DG "C1'" C N R 206 DG N9 N Y N 207 DG C8 C Y N 208 DG N7 N Y N 209 DG C5 C Y N 210 DG C6 C N N 211 DG O6 O N N 212 DG N1 N N N 213 DG C2 C N N 214 DG N2 N N N 215 DG N3 N N N 216 DG C4 C Y N 217 DG HOP3 H N N 218 DG HOP2 H N N 219 DG "H5'" H N N 220 DG "H5''" H N N 221 DG "H4'" H N N 222 DG "H3'" H N N 223 DG "HO3'" H N N 224 DG "H2'" H N N 225 DG "H2''" H N N 226 DG "H1'" H N N 227 DG H8 H N N 228 DG H1 H N N 229 DG H21 H N N 230 DG H22 H N N 231 DT OP3 O N N 232 DT P P N N 233 DT OP1 O N N 234 DT OP2 O N N 235 DT "O5'" O N N 236 DT "C5'" C N N 237 DT "C4'" C N R 238 DT "O4'" O N N 239 DT "C3'" C N S 240 DT "O3'" O N N 241 DT "C2'" C N N 242 DT "C1'" C N R 243 DT N1 N N N 244 DT C2 C N N 245 DT O2 O N N 246 DT N3 N N N 247 DT C4 C N N 248 DT O4 O N N 249 DT C5 C N N 250 DT C7 C N N 251 DT C6 C N N 252 DT HOP3 H N N 253 DT HOP2 H N N 254 DT "H5'" H N N 255 DT "H5''" H N N 256 DT "H4'" H N N 257 DT "H3'" H N N 258 DT "HO3'" H N N 259 DT "H2'" H N N 260 DT "H2''" H N N 261 DT "H1'" H N N 262 DT H3 H N N 263 DT H71 H N N 264 DT H72 H N N 265 DT H73 H N N 266 DT H6 H N N 267 GLN N N N N 268 GLN CA C N S 269 GLN C C N N 270 GLN O O N N 271 GLN CB C N N 272 GLN CG C N N 273 GLN CD C N N 274 GLN OE1 O N N 275 GLN NE2 N N N 276 GLN OXT O N N 277 GLN H H N N 278 GLN H2 H N N 279 GLN HA H N N 280 GLN HB2 H N N 281 GLN HB3 H N N 282 GLN HG2 H N N 283 GLN HG3 H N N 284 GLN HE21 H N N 285 GLN HE22 H N N 286 GLN HXT H N N 287 GLU N N N N 288 GLU CA C N S 289 GLU C C N N 290 GLU O O N N 291 GLU CB C N N 292 GLU CG C N N 293 GLU CD C N N 294 GLU OE1 O N N 295 GLU OE2 O N N 296 GLU OXT O N N 297 GLU H H N N 298 GLU H2 H N N 299 GLU HA H N N 300 GLU HB2 H N N 301 GLU HB3 H N N 302 GLU HG2 H N N 303 GLU HG3 H N N 304 GLU HE2 H N N 305 GLU HXT H N N 306 GLY N N N N 307 GLY CA C N N 308 GLY C C N N 309 GLY O O N N 310 GLY OXT O N N 311 GLY H H N N 312 GLY H2 H N N 313 GLY HA2 H N N 314 GLY HA3 H N N 315 GLY HXT H N N 316 HIS N N N N 317 HIS CA C N S 318 HIS C C N N 319 HIS O O N N 320 HIS CB C N N 321 HIS CG C Y N 322 HIS ND1 N Y N 323 HIS CD2 C Y N 324 HIS CE1 C Y N 325 HIS NE2 N Y N 326 HIS OXT O N N 327 HIS H H N N 328 HIS H2 H N N 329 HIS HA H N N 330 HIS HB2 H N N 331 HIS HB3 H N N 332 HIS HD1 H N N 333 HIS HD2 H N N 334 HIS HE1 H N N 335 HIS HE2 H N N 336 HIS HXT H N N 337 HOH O O N N 338 HOH H1 H N N 339 HOH H2 H N N 340 ILE N N N N 341 ILE CA C N S 342 ILE C C N N 343 ILE O O N N 344 ILE CB C N S 345 ILE CG1 C N N 346 ILE CG2 C N N 347 ILE CD1 C N N 348 ILE OXT O N N 349 ILE H H N N 350 ILE H2 H N N 351 ILE HA H N N 352 ILE HB H N N 353 ILE HG12 H N N 354 ILE HG13 H N N 355 ILE HG21 H N N 356 ILE HG22 H N N 357 ILE HG23 H N N 358 ILE HD11 H N N 359 ILE HD12 H N N 360 ILE HD13 H N N 361 ILE HXT H N N 362 LEU N N N N 363 LEU CA C N S 364 LEU C C N N 365 LEU O O N N 366 LEU CB C N N 367 LEU CG C N N 368 LEU CD1 C N N 369 LEU CD2 C N N 370 LEU OXT O N N 371 LEU H H N N 372 LEU H2 H N N 373 LEU HA H N N 374 LEU HB2 H N N 375 LEU HB3 H N N 376 LEU HG H N N 377 LEU HD11 H N N 378 LEU HD12 H N N 379 LEU HD13 H N N 380 LEU HD21 H N N 381 LEU HD22 H N N 382 LEU HD23 H N N 383 LEU HXT H N N 384 LYS N N N N 385 LYS CA C N S 386 LYS C C N N 387 LYS O O N N 388 LYS CB C N N 389 LYS CG C N N 390 LYS CD C N N 391 LYS CE C N N 392 LYS NZ N N N 393 LYS OXT O N N 394 LYS H H N N 395 LYS H2 H N N 396 LYS HA H N N 397 LYS HB2 H N N 398 LYS HB3 H N N 399 LYS HG2 H N N 400 LYS HG3 H N N 401 LYS HD2 H N N 402 LYS HD3 H N N 403 LYS HE2 H N N 404 LYS HE3 H N N 405 LYS HZ1 H N N 406 LYS HZ2 H N N 407 LYS HZ3 H N N 408 LYS HXT H N N 409 MET N N N N 410 MET CA C N S 411 MET C C N N 412 MET O O N N 413 MET CB C N N 414 MET CG C N N 415 MET SD S N N 416 MET CE C N N 417 MET OXT O N N 418 MET H H N N 419 MET H2 H N N 420 MET HA H N N 421 MET HB2 H N N 422 MET HB3 H N N 423 MET HG2 H N N 424 MET HG3 H N N 425 MET HE1 H N N 426 MET HE2 H N N 427 MET HE3 H N N 428 MET HXT H N N 429 NA NA NA N N 430 PHE N N N N 431 PHE CA C N S 432 PHE C C N N 433 PHE O O N N 434 PHE CB C N N 435 PHE CG C Y N 436 PHE CD1 C Y N 437 PHE CD2 C Y N 438 PHE CE1 C Y N 439 PHE CE2 C Y N 440 PHE CZ C Y N 441 PHE OXT O N N 442 PHE H H N N 443 PHE H2 H N N 444 PHE HA H N N 445 PHE HB2 H N N 446 PHE HB3 H N N 447 PHE HD1 H N N 448 PHE HD2 H N N 449 PHE HE1 H N N 450 PHE HE2 H N N 451 PHE HZ H N N 452 PHE HXT H N N 453 PRO N N N N 454 PRO CA C N S 455 PRO C C N N 456 PRO O O N N 457 PRO CB C N N 458 PRO CG C N N 459 PRO CD C N N 460 PRO OXT O N N 461 PRO H H N N 462 PRO HA H N N 463 PRO HB2 H N N 464 PRO HB3 H N N 465 PRO HG2 H N N 466 PRO HG3 H N N 467 PRO HD2 H N N 468 PRO HD3 H N N 469 PRO HXT H N N 470 SER N N N N 471 SER CA C N S 472 SER C C N N 473 SER O O N N 474 SER CB C N N 475 SER OG O N N 476 SER OXT O N N 477 SER H H N N 478 SER H2 H N N 479 SER HA H N N 480 SER HB2 H N N 481 SER HB3 H N N 482 SER HG H N N 483 SER HXT H N N 484 THR N N N N 485 THR CA C N S 486 THR C C N N 487 THR O O N N 488 THR CB C N R 489 THR OG1 O N N 490 THR CG2 C N N 491 THR OXT O N N 492 THR H H N N 493 THR H2 H N N 494 THR HA H N N 495 THR HB H N N 496 THR HG1 H N N 497 THR HG21 H N N 498 THR HG22 H N N 499 THR HG23 H N N 500 THR HXT H N N 501 TRP N N N N 502 TRP CA C N S 503 TRP C C N N 504 TRP O O N N 505 TRP CB C N N 506 TRP CG C Y N 507 TRP CD1 C Y N 508 TRP CD2 C Y N 509 TRP NE1 N Y N 510 TRP CE2 C Y N 511 TRP CE3 C Y N 512 TRP CZ2 C Y N 513 TRP CZ3 C Y N 514 TRP CH2 C Y N 515 TRP OXT O N N 516 TRP H H N N 517 TRP H2 H N N 518 TRP HA H N N 519 TRP HB2 H N N 520 TRP HB3 H N N 521 TRP HD1 H N N 522 TRP HE1 H N N 523 TRP HE3 H N N 524 TRP HZ2 H N N 525 TRP HZ3 H N N 526 TRP HH2 H N N 527 TRP HXT H N N 528 TYR N N N N 529 TYR CA C N S 530 TYR C C N N 531 TYR O O N N 532 TYR CB C N N 533 TYR CG C Y N 534 TYR CD1 C Y N 535 TYR CD2 C Y N 536 TYR CE1 C Y N 537 TYR CE2 C Y N 538 TYR CZ C Y N 539 TYR OH O N N 540 TYR OXT O N N 541 TYR H H N N 542 TYR H2 H N N 543 TYR HA H N N 544 TYR HB2 H N N 545 TYR HB3 H N N 546 TYR HD1 H N N 547 TYR HD2 H N N 548 TYR HE1 H N N 549 TYR HE2 H N N 550 TYR HH H N N 551 TYR HXT H N N 552 VAL N N N N 553 VAL CA C N S 554 VAL C C N N 555 VAL O O N N 556 VAL CB C N N 557 VAL CG1 C N N 558 VAL CG2 C N N 559 VAL OXT O N N 560 VAL H H N N 561 VAL H2 H N N 562 VAL HA H N N 563 VAL HB H N N 564 VAL HG11 H N N 565 VAL HG12 H N N 566 VAL HG13 H N N 567 VAL HG21 H N N 568 VAL HG22 H N N 569 VAL HG23 H N N 570 VAL HXT H N N 571 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal ALA N CA sing N N 1 ALA N H sing N N 2 ALA N H2 sing N N 3 ALA CA C sing N N 4 ALA CA CB sing N N 5 ALA CA HA sing N N 6 ALA C O doub N N 7 ALA C OXT sing N N 8 ALA CB HB1 sing N N 9 ALA CB HB2 sing N N 10 ALA CB HB3 sing N N 11 ALA OXT HXT sing N N 12 ARG N CA sing N N 13 ARG N H sing N N 14 ARG N H2 sing N N 15 ARG CA C sing N N 16 ARG CA CB sing N N 17 ARG CA HA sing N N 18 ARG C O doub N N 19 ARG C OXT sing N N 20 ARG CB CG sing N N 21 ARG CB HB2 sing N N 22 ARG CB HB3 sing N N 23 ARG CG CD sing N N 24 ARG CG HG2 sing N N 25 ARG CG HG3 sing N N 26 ARG CD NE sing N N 27 ARG CD HD2 sing N N 28 ARG CD HD3 sing N N 29 ARG NE CZ sing N N 30 ARG NE HE sing N N 31 ARG CZ NH1 sing N N 32 ARG CZ NH2 doub N N 33 ARG NH1 HH11 sing N N 34 ARG NH1 HH12 sing N N 35 ARG NH2 HH21 sing N N 36 ARG NH2 HH22 sing N N 37 ARG OXT HXT sing N N 38 ASN N CA sing N N 39 ASN N H sing N N 40 ASN N H2 sing N N 41 ASN CA C sing N N 42 ASN CA CB sing N N 43 ASN CA HA sing N N 44 ASN C O doub N N 45 ASN C OXT sing N N 46 ASN CB CG sing N N 47 ASN CB HB2 sing N N 48 ASN CB HB3 sing N N 49 ASN CG OD1 doub N N 50 ASN CG ND2 sing N N 51 ASN ND2 HD21 sing N N 52 ASN ND2 HD22 sing N N 53 ASN OXT HXT sing N N 54 ASP N CA sing N N 55 ASP N H sing N N 56 ASP N H2 sing N N 57 ASP CA C sing N N 58 ASP CA CB sing N N 59 ASP CA HA sing N N 60 ASP C O doub N N 61 ASP C OXT sing N N 62 ASP CB CG sing N N 63 ASP CB HB2 sing N N 64 ASP CB HB3 sing N N 65 ASP CG OD1 doub N N 66 ASP CG OD2 sing N N 67 ASP OD2 HD2 sing N N 68 ASP OXT HXT sing N N 69 BGM P OP1 doub N N 70 BGM P OP2 sing N N 71 BGM P "O5'" sing N N 72 BGM P OP3 sing N N 73 BGM OP2 HOP2 sing N N 74 BGM "O5'" "C5'" sing N N 75 BGM "C5'" "C4'" sing N N 76 BGM "C5'" "H5'" sing N N 77 BGM "C5'" "H5''" sing N N 78 BGM "C4'" "O4'" sing N N 79 BGM "C4'" "C3'" sing N N 80 BGM "C4'" "H4'" sing N N 81 BGM "O4'" "C1'" sing N N 82 BGM "C1'" N9 sing N N 83 BGM "C1'" "C2'" sing N N 84 BGM "C1'" "H1'" sing N N 85 BGM N9 C8 sing Y N 86 BGM N9 C4 sing Y N 87 BGM C8 N7 doub Y N 88 BGM C8 BR sing N N 89 BGM N7 C5 sing Y N 90 BGM C5 C4 doub Y N 91 BGM C5 C6 sing N N 92 BGM C4 N3 sing N N 93 BGM N3 C2 doub N N 94 BGM C2 N2 sing N N 95 BGM C2 N1 sing N N 96 BGM N2 H21 sing N N 97 BGM N2 H22 sing N N 98 BGM N1 C6 sing N N 99 BGM N1 H1 sing N N 100 BGM C6 O6 doub N N 101 BGM "C2'" "C3'" sing N N 102 BGM "C2'" "H2'" sing N N 103 BGM "C2'" "H2''" sing N N 104 BGM "C3'" "O3'" sing N N 105 BGM "C3'" "H3'" sing N N 106 BGM "O3'" "HO3'" sing N N 107 BGM OP3 HOP3 sing N N 108 CYS N CA sing N N 109 CYS N H sing N N 110 CYS N H2 sing N N 111 CYS CA C sing N N 112 CYS CA CB sing N N 113 CYS CA HA sing N N 114 CYS C O doub N N 115 CYS C OXT sing N N 116 CYS CB SG sing N N 117 CYS CB HB2 sing N N 118 CYS CB HB3 sing N N 119 CYS SG HG sing N N 120 CYS OXT HXT sing N N 121 DA OP3 P sing N N 122 DA OP3 HOP3 sing N N 123 DA P OP1 doub N N 124 DA P OP2 sing N N 125 DA P "O5'" sing N N 126 DA OP2 HOP2 sing N N 127 DA "O5'" "C5'" sing N N 128 DA "C5'" "C4'" sing N N 129 DA "C5'" "H5'" sing N N 130 DA "C5'" "H5''" sing N N 131 DA "C4'" "O4'" sing N N 132 DA "C4'" "C3'" sing N N 133 DA "C4'" "H4'" sing N N 134 DA "O4'" "C1'" sing N N 135 DA "C3'" "O3'" sing N N 136 DA "C3'" "C2'" sing N N 137 DA "C3'" "H3'" sing N N 138 DA "O3'" "HO3'" sing N N 139 DA "C2'" "C1'" sing N N 140 DA "C2'" "H2'" sing N N 141 DA "C2'" "H2''" sing N N 142 DA "C1'" N9 sing N N 143 DA "C1'" "H1'" sing N N 144 DA N9 C8 sing Y N 145 DA N9 C4 sing Y N 146 DA C8 N7 doub Y N 147 DA C8 H8 sing N N 148 DA N7 C5 sing Y N 149 DA C5 C6 sing Y N 150 DA C5 C4 doub Y N 151 DA C6 N6 sing N N 152 DA C6 N1 doub Y N 153 DA N6 H61 sing N N 154 DA N6 H62 sing N N 155 DA N1 C2 sing Y N 156 DA C2 N3 doub Y N 157 DA C2 H2 sing N N 158 DA N3 C4 sing Y N 159 DC OP3 P sing N N 160 DC OP3 HOP3 sing N N 161 DC P OP1 doub N N 162 DC P OP2 sing N N 163 DC P "O5'" sing N N 164 DC OP2 HOP2 sing N N 165 DC "O5'" "C5'" sing N N 166 DC "C5'" "C4'" sing N N 167 DC "C5'" "H5'" sing N N 168 DC "C5'" "H5''" sing N N 169 DC "C4'" "O4'" sing N N 170 DC "C4'" "C3'" sing N N 171 DC "C4'" "H4'" sing N N 172 DC "O4'" "C1'" sing N N 173 DC "C3'" "O3'" sing N N 174 DC "C3'" "C2'" sing N N 175 DC "C3'" "H3'" sing N N 176 DC "O3'" "HO3'" sing N N 177 DC "C2'" "C1'" sing N N 178 DC "C2'" "H2'" sing N N 179 DC "C2'" "H2''" sing N N 180 DC "C1'" N1 sing N N 181 DC "C1'" "H1'" sing N N 182 DC N1 C2 sing N N 183 DC N1 C6 sing N N 184 DC C2 O2 doub N N 185 DC C2 N3 sing N N 186 DC N3 C4 doub N N 187 DC C4 N4 sing N N 188 DC C4 C5 sing N N 189 DC N4 H41 sing N N 190 DC N4 H42 sing N N 191 DC C5 C6 doub N N 192 DC C5 H5 sing N N 193 DC C6 H6 sing N N 194 DG OP3 P sing N N 195 DG OP3 HOP3 sing N N 196 DG P OP1 doub N N 197 DG P OP2 sing N N 198 DG P "O5'" sing N N 199 DG OP2 HOP2 sing N N 200 DG "O5'" "C5'" sing N N 201 DG "C5'" "C4'" sing N N 202 DG "C5'" "H5'" sing N N 203 DG "C5'" "H5''" sing N N 204 DG "C4'" "O4'" sing N N 205 DG "C4'" "C3'" sing N N 206 DG "C4'" "H4'" sing N N 207 DG "O4'" "C1'" sing N N 208 DG "C3'" "O3'" sing N N 209 DG "C3'" "C2'" sing N N 210 DG "C3'" "H3'" sing N N 211 DG "O3'" "HO3'" sing N N 212 DG "C2'" "C1'" sing N N 213 DG "C2'" "H2'" sing N N 214 DG "C2'" "H2''" sing N N 215 DG "C1'" N9 sing N N 216 DG "C1'" "H1'" sing N N 217 DG N9 C8 sing Y N 218 DG N9 C4 sing Y N 219 DG C8 N7 doub Y N 220 DG C8 H8 sing N N 221 DG N7 C5 sing Y N 222 DG C5 C6 sing N N 223 DG C5 C4 doub Y N 224 DG C6 O6 doub N N 225 DG C6 N1 sing N N 226 DG N1 C2 sing N N 227 DG N1 H1 sing N N 228 DG C2 N2 sing N N 229 DG C2 N3 doub N N 230 DG N2 H21 sing N N 231 DG N2 H22 sing N N 232 DG N3 C4 sing N N 233 DT OP3 P sing N N 234 DT OP3 HOP3 sing N N 235 DT P OP1 doub N N 236 DT P OP2 sing N N 237 DT P "O5'" sing N N 238 DT OP2 HOP2 sing N N 239 DT "O5'" "C5'" sing N N 240 DT "C5'" "C4'" sing N N 241 DT "C5'" "H5'" sing N N 242 DT "C5'" "H5''" sing N N 243 DT "C4'" "O4'" sing N N 244 DT "C4'" "C3'" sing N N 245 DT "C4'" "H4'" sing N N 246 DT "O4'" "C1'" sing N N 247 DT "C3'" "O3'" sing N N 248 DT "C3'" "C2'" sing N N 249 DT "C3'" "H3'" sing N N 250 DT "O3'" "HO3'" sing N N 251 DT "C2'" "C1'" sing N N 252 DT "C2'" "H2'" sing N N 253 DT "C2'" "H2''" sing N N 254 DT "C1'" N1 sing N N 255 DT "C1'" "H1'" sing N N 256 DT N1 C2 sing N N 257 DT N1 C6 sing N N 258 DT C2 O2 doub N N 259 DT C2 N3 sing N N 260 DT N3 C4 sing N N 261 DT N3 H3 sing N N 262 DT C4 O4 doub N N 263 DT C4 C5 sing N N 264 DT C5 C7 sing N N 265 DT C5 C6 doub N N 266 DT C7 H71 sing N N 267 DT C7 H72 sing N N 268 DT C7 H73 sing N N 269 DT C6 H6 sing N N 270 GLN N CA sing N N 271 GLN N H sing N N 272 GLN N H2 sing N N 273 GLN CA C sing N N 274 GLN CA CB sing N N 275 GLN CA HA sing N N 276 GLN C O doub N N 277 GLN C OXT sing N N 278 GLN CB CG sing N N 279 GLN CB HB2 sing N N 280 GLN CB HB3 sing N N 281 GLN CG CD sing N N 282 GLN CG HG2 sing N N 283 GLN CG HG3 sing N N 284 GLN CD OE1 doub N N 285 GLN CD NE2 sing N N 286 GLN NE2 HE21 sing N N 287 GLN NE2 HE22 sing N N 288 GLN OXT HXT sing N N 289 GLU N CA sing N N 290 GLU N H sing N N 291 GLU N H2 sing N N 292 GLU CA C sing N N 293 GLU CA CB sing N N 294 GLU CA HA sing N N 295 GLU C O doub N N 296 GLU C OXT sing N N 297 GLU CB CG sing N N 298 GLU CB HB2 sing N N 299 GLU CB HB3 sing N N 300 GLU CG CD sing N N 301 GLU CG HG2 sing N N 302 GLU CG HG3 sing N N 303 GLU CD OE1 doub N N 304 GLU CD OE2 sing N N 305 GLU OE2 HE2 sing N N 306 GLU OXT HXT sing N N 307 GLY N CA sing N N 308 GLY N H sing N N 309 GLY N H2 sing N N 310 GLY CA C sing N N 311 GLY CA HA2 sing N N 312 GLY CA HA3 sing N N 313 GLY C O doub N N 314 GLY C OXT sing N N 315 GLY OXT HXT sing N N 316 HIS N CA sing N N 317 HIS N H sing N N 318 HIS N H2 sing N N 319 HIS CA C sing N N 320 HIS CA CB sing N N 321 HIS CA HA sing N N 322 HIS C O doub N N 323 HIS C OXT sing N N 324 HIS CB CG sing N N 325 HIS CB HB2 sing N N 326 HIS CB HB3 sing N N 327 HIS CG ND1 sing Y N 328 HIS CG CD2 doub Y N 329 HIS ND1 CE1 doub Y N 330 HIS ND1 HD1 sing N N 331 HIS CD2 NE2 sing Y N 332 HIS CD2 HD2 sing N N 333 HIS CE1 NE2 sing Y N 334 HIS CE1 HE1 sing N N 335 HIS NE2 HE2 sing N N 336 HIS OXT HXT sing N N 337 HOH O H1 sing N N 338 HOH O H2 sing N N 339 ILE N CA sing N N 340 ILE N H sing N N 341 ILE N H2 sing N N 342 ILE CA C sing N N 343 ILE CA CB sing N N 344 ILE CA HA sing N N 345 ILE C O doub N N 346 ILE C OXT sing N N 347 ILE CB CG1 sing N N 348 ILE CB CG2 sing N N 349 ILE CB HB sing N N 350 ILE CG1 CD1 sing N N 351 ILE CG1 HG12 sing N N 352 ILE CG1 HG13 sing N N 353 ILE CG2 HG21 sing N N 354 ILE CG2 HG22 sing N N 355 ILE CG2 HG23 sing N N 356 ILE CD1 HD11 sing N N 357 ILE CD1 HD12 sing N N 358 ILE CD1 HD13 sing N N 359 ILE OXT HXT sing N N 360 LEU N CA sing N N 361 LEU N H sing N N 362 LEU N H2 sing N N 363 LEU CA C sing N N 364 LEU CA CB sing N N 365 LEU CA HA sing N N 366 LEU C O doub N N 367 LEU C OXT sing N N 368 LEU CB CG sing N N 369 LEU CB HB2 sing N N 370 LEU CB HB3 sing N N 371 LEU CG CD1 sing N N 372 LEU CG CD2 sing N N 373 LEU CG HG sing N N 374 LEU CD1 HD11 sing N N 375 LEU CD1 HD12 sing N N 376 LEU CD1 HD13 sing N N 377 LEU CD2 HD21 sing N N 378 LEU CD2 HD22 sing N N 379 LEU CD2 HD23 sing N N 380 LEU OXT HXT sing N N 381 LYS N CA sing N N 382 LYS N H sing N N 383 LYS N H2 sing N N 384 LYS CA C sing N N 385 LYS CA CB sing N N 386 LYS CA HA sing N N 387 LYS C O doub N N 388 LYS C OXT sing N N 389 LYS CB CG sing N N 390 LYS CB HB2 sing N N 391 LYS CB HB3 sing N N 392 LYS CG CD sing N N 393 LYS CG HG2 sing N N 394 LYS CG HG3 sing N N 395 LYS CD CE sing N N 396 LYS CD HD2 sing N N 397 LYS CD HD3 sing N N 398 LYS CE NZ sing N N 399 LYS CE HE2 sing N N 400 LYS CE HE3 sing N N 401 LYS NZ HZ1 sing N N 402 LYS NZ HZ2 sing N N 403 LYS NZ HZ3 sing N N 404 LYS OXT HXT sing N N 405 MET N CA sing N N 406 MET N H sing N N 407 MET N H2 sing N N 408 MET CA C sing N N 409 MET CA CB sing N N 410 MET CA HA sing N N 411 MET C O doub N N 412 MET C OXT sing N N 413 MET CB CG sing N N 414 MET CB HB2 sing N N 415 MET CB HB3 sing N N 416 MET CG SD sing N N 417 MET CG HG2 sing N N 418 MET CG HG3 sing N N 419 MET SD CE sing N N 420 MET CE HE1 sing N N 421 MET CE HE2 sing N N 422 MET CE HE3 sing N N 423 MET OXT HXT sing N N 424 PHE N CA sing N N 425 PHE N H sing N N 426 PHE N H2 sing N N 427 PHE CA C sing N N 428 PHE CA CB sing N N 429 PHE CA HA sing N N 430 PHE C O doub N N 431 PHE C OXT sing N N 432 PHE CB CG sing N N 433 PHE CB HB2 sing N N 434 PHE CB HB3 sing N N 435 PHE CG CD1 doub Y N 436 PHE CG CD2 sing Y N 437 PHE CD1 CE1 sing Y N 438 PHE CD1 HD1 sing N N 439 PHE CD2 CE2 doub Y N 440 PHE CD2 HD2 sing N N 441 PHE CE1 CZ doub Y N 442 PHE CE1 HE1 sing N N 443 PHE CE2 CZ sing Y N 444 PHE CE2 HE2 sing N N 445 PHE CZ HZ sing N N 446 PHE OXT HXT sing N N 447 PRO N CA sing N N 448 PRO N CD sing N N 449 PRO N H sing N N 450 PRO CA C sing N N 451 PRO CA CB sing N N 452 PRO CA HA sing N N 453 PRO C O doub N N 454 PRO C OXT sing N N 455 PRO CB CG sing N N 456 PRO CB HB2 sing N N 457 PRO CB HB3 sing N N 458 PRO CG CD sing N N 459 PRO CG HG2 sing N N 460 PRO CG HG3 sing N N 461 PRO CD HD2 sing N N 462 PRO CD HD3 sing N N 463 PRO OXT HXT sing N N 464 SER N CA sing N N 465 SER N H sing N N 466 SER N H2 sing N N 467 SER CA C sing N N 468 SER CA CB sing N N 469 SER CA HA sing N N 470 SER C O doub N N 471 SER C OXT sing N N 472 SER CB OG sing N N 473 SER CB HB2 sing N N 474 SER CB HB3 sing N N 475 SER OG HG sing N N 476 SER OXT HXT sing N N 477 THR N CA sing N N 478 THR N H sing N N 479 THR N H2 sing N N 480 THR CA C sing N N 481 THR CA CB sing N N 482 THR CA HA sing N N 483 THR C O doub N N 484 THR C OXT sing N N 485 THR CB OG1 sing N N 486 THR CB CG2 sing N N 487 THR CB HB sing N N 488 THR OG1 HG1 sing N N 489 THR CG2 HG21 sing N N 490 THR CG2 HG22 sing N N 491 THR CG2 HG23 sing N N 492 THR OXT HXT sing N N 493 TRP N CA sing N N 494 TRP N H sing N N 495 TRP N H2 sing N N 496 TRP CA C sing N N 497 TRP CA CB sing N N 498 TRP CA HA sing N N 499 TRP C O doub N N 500 TRP C OXT sing N N 501 TRP CB CG sing N N 502 TRP CB HB2 sing N N 503 TRP CB HB3 sing N N 504 TRP CG CD1 doub Y N 505 TRP CG CD2 sing Y N 506 TRP CD1 NE1 sing Y N 507 TRP CD1 HD1 sing N N 508 TRP CD2 CE2 doub Y N 509 TRP CD2 CE3 sing Y N 510 TRP NE1 CE2 sing Y N 511 TRP NE1 HE1 sing N N 512 TRP CE2 CZ2 sing Y N 513 TRP CE3 CZ3 doub Y N 514 TRP CE3 HE3 sing N N 515 TRP CZ2 CH2 doub Y N 516 TRP CZ2 HZ2 sing N N 517 TRP CZ3 CH2 sing Y N 518 TRP CZ3 HZ3 sing N N 519 TRP CH2 HH2 sing N N 520 TRP OXT HXT sing N N 521 TYR N CA sing N N 522 TYR N H sing N N 523 TYR N H2 sing N N 524 TYR CA C sing N N 525 TYR CA CB sing N N 526 TYR CA HA sing N N 527 TYR C O doub N N 528 TYR C OXT sing N N 529 TYR CB CG sing N N 530 TYR CB HB2 sing N N 531 TYR CB HB3 sing N N 532 TYR CG CD1 doub Y N 533 TYR CG CD2 sing Y N 534 TYR CD1 CE1 sing Y N 535 TYR CD1 HD1 sing N N 536 TYR CD2 CE2 doub Y N 537 TYR CD2 HD2 sing N N 538 TYR CE1 CZ doub Y N 539 TYR CE1 HE1 sing N N 540 TYR CE2 CZ sing Y N 541 TYR CE2 HE2 sing N N 542 TYR CZ OH sing N N 543 TYR OH HH sing N N 544 TYR OXT HXT sing N N 545 VAL N CA sing N N 546 VAL N H sing N N 547 VAL N H2 sing N N 548 VAL CA C sing N N 549 VAL CA CB sing N N 550 VAL CA HA sing N N 551 VAL C O doub N N 552 VAL C OXT sing N N 553 VAL CB CG1 sing N N 554 VAL CB CG2 sing N N 555 VAL CB HB sing N N 556 VAL CG1 HG11 sing N N 557 VAL CG1 HG12 sing N N 558 VAL CG1 HG13 sing N N 559 VAL CG2 HG21 sing N N 560 VAL CG2 HG22 sing N N 561 VAL CG2 HG23 sing N N 562 VAL OXT HXT sing N N 563 # loop_ _ndb_struct_conf_na.entry_id _ndb_struct_conf_na.feature 4M2Y 'double helix' 4M2Y 'b-form double helix' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 B DC 1 1_555 D DG 5 1_555 0.474 -0.137 0.649 -9.420 -8.714 1.797 1 T_DC1:DG5_D T 1 ? D 5 ? 19 1 1 B DC 2 1_555 D DG 4 1_555 0.402 -0.193 -0.101 -1.408 -6.837 2.157 2 T_DC2:DG4_D T 2 ? D 4 ? 19 1 1 B DG 3 1_555 D DC 3 1_555 -0.084 -0.046 -0.069 -1.426 -9.319 -2.612 3 T_DG3:DC3_D T 3 ? D 3 ? 19 1 1 B DA 4 1_555 D DT 2 1_555 -0.052 -0.099 0.053 1.987 -0.878 -3.549 4 T_DA4:DT2_D T 4 ? D 2 ? 20 1 1 B DC 5 1_555 D DG 1 1_555 0.336 -0.159 -0.173 14.493 7.290 -1.319 5 T_DC5:DG1_D T 5 ? D 1 ? 19 1 1 B DT 7 1_555 C DA 10 1_555 -0.550 -0.219 -0.287 -14.559 -8.656 1.857 6 T_DT7:DA10_P T 7 ? P 10 ? 20 1 1 B DC 8 1_555 C DG 9 1_555 0.070 -0.122 -0.377 3.255 -12.282 -0.010 7 T_DC8:DG9_P T 8 ? P 9 ? 19 1 1 B DG 9 1_555 C DC 8 1_555 -0.233 -0.235 0.110 -0.459 -6.749 -2.961 8 T_DG9:DC8_P T 9 ? P 8 ? 19 1 1 B DC 10 1_555 C DG 7 1_555 0.182 -0.074 0.067 5.856 -11.955 -2.097 9 T_DC10:DG7_P T 10 ? P 7 ? 19 1 1 B DA 11 1_555 C DT 6 1_555 -0.286 -0.116 0.426 5.352 -14.045 -1.304 10 T_DA11:DT6_P T 11 ? P 6 ? 20 1 1 B DT 12 1_555 C DA 5 1_555 0.178 0.036 -0.141 9.763 -10.952 2.495 11 T_DT12:DA5_P T 12 ? P 5 ? 20 1 1 B DC 13 1_555 C DG 4 1_555 0.413 0.055 -0.174 2.333 -14.251 3.761 12 T_DC13:DG4_P T 13 ? P 4 ? 19 1 1 B DA 14 1_555 C DT 3 1_555 0.111 -0.027 0.047 -2.787 -8.641 -3.459 13 T_DA14:DT3_P T 14 ? P 3 ? 20 1 1 B DG 15 1_555 C DC 2 1_555 -0.305 -0.234 0.135 1.995 -7.101 -2.966 14 T_DG15:DC2_P T 15 ? P 2 ? 19 1 1 B DC 16 1_555 C DG 1 1_555 -0.082 -0.229 0.059 5.615 -12.016 2.034 15 T_DC16:DG1_P T 16 ? P 1 ? 19 1 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 B DC 1 1_555 D DG 5 1_555 B DC 2 1_555 D DG 4 1_555 1.011 0.842 3.077 8.525 -1.744 36.172 1.547 -0.483 3.183 -2.760 -13.490 37.170 1 TT_DC1DC2:DG4DG5_DD T 1 ? D 5 ? T 2 ? D 4 ? 1 B DC 2 1_555 D DG 4 1_555 B DG 3 1_555 D DC 3 1_555 -1.017 0.715 3.307 -3.968 10.874 31.477 -0.673 1.067 3.457 19.247 7.025 33.487 2 TT_DC2DG3:DC3DG4_DD T 2 ? D 4 ? T 3 ? D 3 ? 1 B DG 3 1_555 D DC 3 1_555 B DA 4 1_555 D DT 2 1_555 -0.466 -0.074 3.120 -3.932 0.554 35.644 -0.196 0.215 3.150 0.902 6.399 35.858 3 TT_DG3DA4:DT2DC3_DD T 3 ? D 3 ? T 4 ? D 2 ? 1 B DA 4 1_555 D DT 2 1_555 B DC 5 1_555 D DG 1 1_555 0.680 -0.455 3.086 0.846 2.188 28.806 -1.369 -1.185 3.062 4.388 -1.697 28.899 4 TT_DA4DC5:DG1DT2_DD T 4 ? D 2 ? T 5 ? D 1 ? 1 B DT 7 1_555 C DA 10 1_555 B DC 8 1_555 C DG 9 1_555 -0.247 0.087 2.991 1.463 3.021 31.654 -0.345 0.695 2.973 5.519 -2.673 31.827 5 TT_DT7DC8:DG9DA10_PP T 7 ? P 10 ? T 8 ? P 9 ? 1 B DC 8 1_555 C DG 9 1_555 B DG 9 1_555 C DC 8 1_555 -1.064 0.617 3.444 -8.095 10.608 35.434 -0.577 0.477 3.625 16.716 12.755 37.787 6 TT_DC8DG9:DC8DG9_PP T 8 ? P 9 ? T 9 ? P 8 ? 1 B DG 9 1_555 C DC 8 1_555 B DC 10 1_555 C DG 7 1_555 -0.247 -0.299 3.171 -0.251 3.091 30.556 -1.150 0.418 3.128 5.846 0.475 30.709 7 TT_DG9DC10:DG7DC8_PP T 9 ? P 8 ? T 10 ? P 7 ? 1 B DC 10 1_555 C DG 7 1_555 B DA 11 1_555 C DT 6 1_555 -0.010 -0.019 3.142 -2.076 7.463 35.160 -1.052 -0.268 3.070 12.173 3.386 35.977 8 TT_DC10DA11:DT6DG7_PP T 10 ? P 7 ? T 11 ? P 6 ? 1 B DA 11 1_555 C DT 6 1_555 B DT 12 1_555 C DA 5 1_555 0.580 -0.459 3.213 5.170 -3.216 32.964 -0.266 -0.154 3.293 -5.607 -9.015 33.506 9 TT_DA11DT12:DA5DT6_PP T 11 ? P 6 ? T 12 ? P 5 ? 1 B DT 12 1_555 C DA 5 1_555 B DC 13 1_555 C DG 4 1_555 0.357 -0.088 3.275 3.132 -1.285 43.399 0.007 -0.178 3.293 -1.734 -4.228 43.524 10 TT_DT12DC13:DG4DA5_PP T 12 ? P 5 ? T 13 ? P 4 ? 1 B DC 13 1_555 C DG 4 1_555 B DA 14 1_555 C DT 3 1_555 -0.402 0.136 3.413 -0.673 7.507 32.580 -1.068 0.583 3.367 13.163 1.180 33.418 11 TT_DC13DA14:DT3DG4_PP T 13 ? P 4 ? T 14 ? P 3 ? 1 B DA 14 1_555 C DT 3 1_555 B DG 15 1_555 C DC 2 1_555 0.175 -0.384 3.133 -2.205 1.954 30.623 -1.087 -0.740 3.083 3.689 4.164 30.762 12 TT_DA14DG15:DC2DT3_PP T 14 ? P 3 ? T 15 ? P 2 ? 1 B DG 15 1_555 C DC 2 1_555 B DC 16 1_555 C DG 1 1_555 0.651 -0.591 3.177 0.504 4.411 34.595 -1.630 -1.013 3.089 7.379 -0.843 34.870 13 TT_DG15DC16:DG1DC2_PP T 15 ? P 2 ? T 16 ? P 1 ? # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 5 'SODIUM ION' NA 6 water HOH # _pdbx_initial_refinement_model.id 1 _pdbx_initial_refinement_model.entity_id_list ? _pdbx_initial_refinement_model.type 'experimental model' _pdbx_initial_refinement_model.source_name PDB _pdbx_initial_refinement_model.accession_code 3ISB _pdbx_initial_refinement_model.details 'PDB ENTRY 3ISB' #