HEADER HYDROLASE/IMMUNE SYSTEM 06-AUG-13 4M3K TITLE STRUCTURE OF A SINGLE DOMAIN CAMELID ANTIBODY FRAGMENT CAB-H7S IN TITLE 2 COMPLEX WITH THE BLAP BETA-LACTAMASE FROM BACILLUS LICHENIFORMIS COMPND MOL_ID: 1; COMPND 2 MOLECULE: BETA-LACTAMASE; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: UNP RESIDUES 44-307; COMPND 5 SYNONYM: PENICILLINASE, LARGE EXOPENICILLINASE, SMALL COMPND 6 EXOPENICILLINASE; COMPND 7 EC: 3.5.2.6; COMPND 8 ENGINEERED: YES; COMPND 9 MOL_ID: 2; COMPND 10 MOLECULE: CAMELID HEAVY-CHAIN ANTIBODY VARIABLE FRAGMENT CAB-H7S; COMPND 11 CHAIN: B; COMPND 12 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BACILLUS LICHENIFORMIS; SOURCE 3 ORGANISM_TAXID: 1402; SOURCE 4 GENE: PENP, BLAP; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: PNY; SOURCE 9 MOL_ID: 2; SOURCE 10 ORGANISM_SCIENTIFIC: LAMA GLAMA; SOURCE 11 ORGANISM_TAXID: 9844; SOURCE 12 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 13 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 14 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 15 EXPRESSION_SYSTEM_PLASMID: PMES4 KEYWDS IMMUNOGLOBULIN FOLD, ANTIGEN BINDING, BETA-LACTAMASE-ANTIBODY KEYWDS 2 COMPLEX, HYDROLASE-IMMUNE SYSTEM COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR C.PAIN,F.KERFF,R.HERMAN,E.SAUVAGE,S.PREUMONT,P.CHARLIER,M.DUMOULIN REVDAT 1 06-AUG-14 4M3K 0 JRNL AUTH C.PAIN,A.COSOLO,S.PREUMONT,N.SCARAFONE,D.THORN,R.HERMAN, JRNL AUTH 2 H.SPIEGEL,E.PARDON,A.MATAGNE,P.CHARLIER,J.STEYAERT, JRNL AUTH 3 C.DAMBLON,F.KERFF,G.ESPOSITO,M.DUMOULIN JRNL TITL PROBING THE MECHANISM OF AGGREGATION OF POLYQ MODEL PROTEINS JRNL TITL 2 WITH CAMELID HEAVY-CHAIN ANTIBODY FRAGMENTS JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.48 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.6.0117 REMARK 3 AUTHORS : MURSHUDOV,VAGIN,DODSON REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.48 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 36.90 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 98.8 REMARK 3 NUMBER OF REFLECTIONS : 49631 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.163 REMARK 3 R VALUE (WORKING SET) : 0.161 REMARK 3 FREE R VALUE : 0.195 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 2662 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.48 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.52 REMARK 3 REFLECTION IN BIN (WORKING SET) : 3259 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 91.15 REMARK 3 BIN R VALUE (WORKING SET) : 0.3530 REMARK 3 BIN FREE R VALUE SET COUNT : 183 REMARK 3 BIN FREE R VALUE : 0.4160 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2890 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 2 REMARK 3 SOLVENT ATOMS : 269 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 24.10 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 20.03 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.48000 REMARK 3 B22 (A**2) : -0.09000 REMARK 3 B33 (A**2) : -0.29000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.19000 REMARK 3 B23 (A**2) : -0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.097 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.075 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.054 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 3.315 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.972 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.961 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3005 ; 0.014 ; 0.020 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4071 ; 1.675 ; 1.967 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 386 ; 6.176 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 134 ;35.230 ;24.478 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 536 ;13.075 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 23 ;16.408 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 466 ; 0.112 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2239 ; 0.009 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): 3005 ; 2.764 ; 3.000 REMARK 3 SPHERICITY; FREE ATOMS (A**2): 73 ;23.595 ; 5.000 REMARK 3 SPHERICITY; BONDED ATOMS (A**2): 3151 ; 8.397 ; 5.000 REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 14 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 29 A 61 REMARK 3 ORIGIN FOR THE GROUP (A): 3.1180 11.8900 -17.2840 REMARK 3 T TENSOR REMARK 3 T11: 0.0952 T22: 0.1630 REMARK 3 T33: 0.2181 T12: -0.0317 REMARK 3 T13: -0.0689 T23: -0.0059 REMARK 3 L TENSOR REMARK 3 L11: 0.6572 L22: 2.4064 REMARK 3 L33: 0.1980 L12: -0.9057 REMARK 3 L13: -0.0559 L23: 0.0475 REMARK 3 S TENSOR REMARK 3 S11: 0.0717 S12: 0.0539 S13: 0.0409 REMARK 3 S21: 0.0157 S22: -0.0668 S23: -0.1257 REMARK 3 S31: -0.1067 S32: 0.1135 S33: -0.0049 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 62 A 145 REMARK 3 ORIGIN FOR THE GROUP (A): -19.1520 -6.7690 -24.1860 REMARK 3 T TENSOR REMARK 3 T11: 0.0256 T22: 0.1463 REMARK 3 T33: 0.1773 T12: 0.0087 REMARK 3 T13: -0.0661 T23: 0.0006 REMARK 3 L TENSOR REMARK 3 L11: 0.2378 L22: 0.2861 REMARK 3 L33: 0.3219 L12: 0.1254 REMARK 3 L13: 0.0728 L23: 0.1542 REMARK 3 S TENSOR REMARK 3 S11: 0.0031 S12: 0.0387 S13: -0.0011 REMARK 3 S21: 0.0028 S22: -0.0082 S23: 0.0152 REMARK 3 S31: 0.0012 S32: 0.0023 S33: 0.0051 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 146 A 167 REMARK 3 ORIGIN FOR THE GROUP (A): -12.2570 -6.4810 -10.5450 REMARK 3 T TENSOR REMARK 3 T11: 0.0484 T22: 0.1433 REMARK 3 T33: 0.1663 T12: -0.0058 REMARK 3 T13: -0.0518 T23: 0.0067 REMARK 3 L TENSOR REMARK 3 L11: 2.6887 L22: 1.1808 REMARK 3 L33: 0.6093 L12: -0.2070 REMARK 3 L13: 0.9943 L23: -0.3140 REMARK 3 S TENSOR REMARK 3 S11: 0.0538 S12: -0.0774 S13: 0.0143 REMARK 3 S21: 0.1129 S22: -0.1018 S23: -0.0381 REMARK 3 S31: 0.0362 S32: -0.0092 S33: 0.0480 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 168 A 195 REMARK 3 ORIGIN FOR THE GROUP (A): -8.7170 0.8700 -13.4600 REMARK 3 T TENSOR REMARK 3 T11: 0.0346 T22: 0.1345 REMARK 3 T33: 0.1695 T12: -0.0046 REMARK 3 T13: -0.0677 T23: 0.0021 REMARK 3 L TENSOR REMARK 3 L11: 0.4552 L22: 1.2682 REMARK 3 L33: 0.5123 L12: -0.4664 REMARK 3 L13: -0.2170 L23: 0.3276 REMARK 3 S TENSOR REMARK 3 S11: -0.0173 S12: -0.0482 S13: -0.0280 REMARK 3 S21: 0.0930 S22: -0.0075 S23: -0.0177 REMARK 3 S31: 0.0369 S32: -0.0003 S33: 0.0248 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 196 A 217 REMARK 3 ORIGIN FOR THE GROUP (A): -4.3370 -9.9300 -28.3790 REMARK 3 T TENSOR REMARK 3 T11: 0.0315 T22: 0.1408 REMARK 3 T33: 0.1823 T12: 0.0083 REMARK 3 T13: -0.0554 T23: 0.0002 REMARK 3 L TENSOR REMARK 3 L11: 0.6583 L22: 3.5102 REMARK 3 L33: 0.5717 L12: -0.9239 REMARK 3 L13: 0.4909 L23: -1.3614 REMARK 3 S TENSOR REMARK 3 S11: -0.0058 S12: 0.0534 S13: -0.0189 REMARK 3 S21: -0.0835 S22: -0.0432 S23: -0.1454 REMARK 3 S31: 0.0201 S32: 0.0362 S33: 0.0489 REMARK 3 REMARK 3 TLS GROUP : 6 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 218 A 269 REMARK 3 ORIGIN FOR THE GROUP (A): -3.1010 5.6920 -26.0860 REMARK 3 T TENSOR REMARK 3 T11: 0.0233 T22: 0.1509 REMARK 3 T33: 0.1813 T12: 0.0059 REMARK 3 T13: -0.0639 T23: 0.0002 REMARK 3 L TENSOR REMARK 3 L11: 0.6860 L22: 0.8068 REMARK 3 L33: 0.5987 L12: -0.3766 REMARK 3 L13: -0.2548 L23: 0.0475 REMARK 3 S TENSOR REMARK 3 S11: -0.0214 S12: 0.0627 S13: 0.0452 REMARK 3 S21: 0.0056 S22: -0.0077 S23: -0.0246 REMARK 3 S31: 0.0094 S32: 0.0512 S33: 0.0291 REMARK 3 REMARK 3 TLS GROUP : 7 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 270 A 291 REMARK 3 ORIGIN FOR THE GROUP (A): -3.9740 14.7170 -22.2790 REMARK 3 T TENSOR REMARK 3 T11: 0.0541 T22: 0.1218 REMARK 3 T33: 0.1978 T12: -0.0101 REMARK 3 T13: -0.0634 T23: 0.0023 REMARK 3 L TENSOR REMARK 3 L11: 3.2455 L22: 0.4780 REMARK 3 L33: 1.1492 L12: -0.2957 REMARK 3 L13: -0.9011 L23: 0.0131 REMARK 3 S TENSOR REMARK 3 S11: 0.0232 S12: 0.0348 S13: 0.0327 REMARK 3 S21: 0.0016 S22: -0.0274 S23: -0.0028 REMARK 3 S31: -0.1824 S32: 0.0783 S33: 0.0043 REMARK 3 REMARK 3 TLS GROUP : 8 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 2 B 8 REMARK 3 ORIGIN FOR THE GROUP (A): -40.3810 -15.9240 -14.1890 REMARK 3 T TENSOR REMARK 3 T11: 0.1190 T22: 0.2711 REMARK 3 T33: 0.4516 T12: -0.0817 REMARK 3 T13: -0.0290 T23: -0.0991 REMARK 3 L TENSOR REMARK 3 L11: 14.9251 L22: 14.3796 REMARK 3 L33: 19.8953 L12: -8.5062 REMARK 3 L13: -17.0125 L23: 8.3316 REMARK 3 S TENSOR REMARK 3 S11: -0.7001 S12: 0.8457 S13: -0.6590 REMARK 3 S21: -0.4619 S22: -0.3343 S23: 0.9140 REMARK 3 S31: 0.9387 S32: -1.0853 S33: 1.0344 REMARK 3 REMARK 3 TLS GROUP : 9 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 9 B 24 REMARK 3 ORIGIN FOR THE GROUP (A): -42.1390 -7.1320 -1.7420 REMARK 3 T TENSOR REMARK 3 T11: 0.0469 T22: 0.1592 REMARK 3 T33: 0.1898 T12: 0.0005 REMARK 3 T13: -0.0451 T23: -0.0053 REMARK 3 L TENSOR REMARK 3 L11: 1.1083 L22: 2.5956 REMARK 3 L33: 2.4196 L12: -1.1960 REMARK 3 L13: -0.9813 L23: 2.0658 REMARK 3 S TENSOR REMARK 3 S11: -0.1186 S12: -0.2035 S13: -0.0297 REMARK 3 S21: 0.0089 S22: 0.0741 S23: 0.0754 REMARK 3 S31: 0.0541 S32: 0.0228 S33: 0.0446 REMARK 3 REMARK 3 TLS GROUP : 10 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 25 B 38 REMARK 3 ORIGIN FOR THE GROUP (A): -30.7810 -15.0750 -13.8490 REMARK 3 T TENSOR REMARK 3 T11: 0.0976 T22: 0.1664 REMARK 3 T33: 0.2094 T12: -0.0108 REMARK 3 T13: -0.0534 T23: 0.0001 REMARK 3 L TENSOR REMARK 3 L11: 1.1091 L22: 1.7409 REMARK 3 L33: 1.7254 L12: -1.2435 REMARK 3 L13: -1.0862 L23: 1.6764 REMARK 3 S TENSOR REMARK 3 S11: -0.0096 S12: 0.0310 S13: -0.0222 REMARK 3 S21: 0.1240 S22: -0.1184 S23: 0.0574 REMARK 3 S31: 0.1733 S32: -0.0903 S33: 0.1280 REMARK 3 REMARK 3 TLS GROUP : 11 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 39 B 50 REMARK 3 ORIGIN FOR THE GROUP (A): -31.7100 -1.0820 -11.7820 REMARK 3 T TENSOR REMARK 3 T11: 0.0412 T22: 0.1328 REMARK 3 T33: 0.1958 T12: 0.0032 REMARK 3 T13: -0.0575 T23: -0.0191 REMARK 3 L TENSOR REMARK 3 L11: 2.3094 L22: 3.0823 REMARK 3 L33: 8.4269 L12: -1.4104 REMARK 3 L13: 2.4308 L23: -4.4639 REMARK 3 S TENSOR REMARK 3 S11: -0.0926 S12: -0.1667 S13: 0.1124 REMARK 3 S21: 0.1935 S22: 0.0804 S23: -0.0046 REMARK 3 S31: -0.4231 S32: -0.0304 S33: 0.0123 REMARK 3 REMARK 3 TLS GROUP : 12 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 51 B 86 REMARK 3 ORIGIN FOR THE GROUP (A): -30.2710 -10.3570 -3.2790 REMARK 3 T TENSOR REMARK 3 T11: 0.0559 T22: 0.2052 REMARK 3 T33: 0.1822 T12: -0.0005 REMARK 3 T13: -0.0564 T23: -0.0091 REMARK 3 L TENSOR REMARK 3 L11: 1.5512 L22: 1.0705 REMARK 3 L33: 1.2091 L12: -1.0623 REMARK 3 L13: -1.1868 L23: 0.8132 REMARK 3 S TENSOR REMARK 3 S11: -0.1544 S12: -0.2498 S13: 0.0114 REMARK 3 S21: 0.1340 S22: 0.1032 S23: -0.0266 REMARK 3 S31: 0.1787 S32: 0.1402 S33: 0.0512 REMARK 3 REMARK 3 TLS GROUP : 13 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 87 B 103 REMARK 3 ORIGIN FOR THE GROUP (A): -34.3850 -9.0210 -13.5090 REMARK 3 T TENSOR REMARK 3 T11: 0.0262 T22: 0.1449 REMARK 3 T33: 0.1791 T12: -0.0026 REMARK 3 T13: -0.0605 T23: -0.0144 REMARK 3 L TENSOR REMARK 3 L11: 0.6059 L22: 0.5635 REMARK 3 L33: 1.4486 L12: -0.4903 REMARK 3 L13: -0.8221 L23: 0.6319 REMARK 3 S TENSOR REMARK 3 S11: -0.0231 S12: -0.0139 S13: -0.0067 REMARK 3 S21: -0.0114 S22: 0.0295 S23: 0.0277 REMARK 3 S31: 0.0225 S32: -0.0447 S33: -0.0064 REMARK 3 REMARK 3 TLS GROUP : 14 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 104 B 120 REMARK 3 ORIGIN FOR THE GROUP (A): -37.5620 -9.4790 -15.4100 REMARK 3 T TENSOR REMARK 3 T11: 0.0256 T22: 0.1681 REMARK 3 T33: 0.1977 T12: -0.0119 REMARK 3 T13: -0.0582 T23: -0.0232 REMARK 3 L TENSOR REMARK 3 L11: 2.8555 L22: 3.3262 REMARK 3 L33: 3.7733 L12: -2.7657 REMARK 3 L13: -3.0056 L23: 2.8121 REMARK 3 S TENSOR REMARK 3 S11: -0.0262 S12: 0.2299 S13: -0.0759 REMARK 3 S21: -0.0075 S22: -0.1083 S23: 0.0897 REMARK 3 S31: 0.0755 S32: -0.3109 S33: 0.1345 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN USED IF PRESENT IN REMARK 3 THE INPUT REMARK 4 REMARK 4 4M3K COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 23-AUG-13. REMARK 100 THE RCSB ID CODE IS RCSB081421. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 22-FEB-13 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SOLEIL REMARK 200 BEAMLINE : PROXIMA 1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.98011 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XDS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 52300 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.480 REMARK 200 RESOLUTION RANGE LOW (A) : 42.940 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.9 REMARK 200 DATA REDUNDANCY : 3.500 REMARK 200 R MERGE (I) : 0.04000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 16.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.48 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.56 REMARK 200 COMPLETENESS FOR SHELL (%) : 95.4 REMARK 200 DATA REDUNDANCY IN SHELL : 3.30 REMARK 200 R MERGE FOR SHELL (I) : 0.55000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.300 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 32.69 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 1.83 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2 UL 0.2 M (NH4)CL 20 % PEG3350 + REMARK 280 0.2 UL COMPLEX 14.2 MG/ML 20 MM TRIS, PH 7.5, VAPOR DIFFUSION, REMARK 280 SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 21.47000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1860 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 15280 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -27.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 THR A 27 REMARK 465 GLU A 28 REMARK 465 MET A 292 REMARK 465 ASN A 293 REMARK 465 GLY A 294 REMARK 465 LYS A 295 REMARK 465 GLY A 296 REMARK 465 PRO A 297 REMARK 465 HIS A 298 REMARK 465 HIS A 299 REMARK 465 HIS A 300 REMARK 465 HIS A 301 REMARK 465 HIS A 302 REMARK 465 GLN B 1 REMARK 465 PRO B 41 REMARK 465 GLY B 42 REMARK 465 LYS B 43 REMARK 465 HIS B 121 REMARK 465 HIS B 122 REMARK 465 HIS B 123 REMARK 465 HIS B 124 REMARK 465 HIS B 125 REMARK 465 HIS B 126 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 TRP A 229 CE2 TRP A 229 CD2 0.073 REMARK 500 PRO A 252 C PRO A 254 N 0.238 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 128 NE - CZ - NH1 ANGL. DEV. = -3.2 DEGREES REMARK 500 ARG A 204 NE - CZ - NH2 ANGL. DEV. = -4.0 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA A 69 -141.34 56.25 REMARK 500 VAL A 103 -136.56 -118.55 REMARK 500 ASN A 161 74.13 -118.49 REMARK 500 GLU A 163 -37.93 -142.41 REMARK 500 LEU A 220 -120.26 -103.42 REMARK 500 THR B 32 -85.80 -89.76 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL B 201 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4M3J RELATED DB: PDB DBREF 4M3K A 27 295 UNP P00808 BLAC_BACLI 44 307 DBREF 4M3K B 1 126 PDB 4M3K 4M3K 1 126 SEQADV 4M3K PRO A 197A UNP P00808 INSERTION SEQADV 4M3K GLY A 197B UNP P00808 INSERTION SEQADV 4M3K GLY A 296 UNP P00808 EXPRESSION TAG SEQADV 4M3K PRO A 297 UNP P00808 EXPRESSION TAG SEQADV 4M3K HIS A 298 UNP P00808 EXPRESSION TAG SEQADV 4M3K HIS A 299 UNP P00808 EXPRESSION TAG SEQADV 4M3K HIS A 300 UNP P00808 EXPRESSION TAG SEQADV 4M3K HIS A 301 UNP P00808 EXPRESSION TAG SEQADV 4M3K HIS A 302 UNP P00808 EXPRESSION TAG SEQRES 1 A 273 THR GLU MET LYS ASP ASP PHE ALA LYS LEU GLU GLU GLN SEQRES 2 A 273 PHE ASP ALA LYS LEU GLY ILE PHE ALA LEU ASP THR GLY SEQRES 3 A 273 THR ASN ARG THR VAL ALA TYR ARG PRO ASP GLU ARG PHE SEQRES 4 A 273 ALA PHE ALA SER THR ILE LYS ALA LEU THR VAL GLY VAL SEQRES 5 A 273 LEU LEU GLN GLN LYS SER ILE GLU ASP LEU ASN GLN ARG SEQRES 6 A 273 ILE THR TYR THR ARG ASP ASP LEU VAL ASN TYR ASN PRO SEQRES 7 A 273 ILE THR GLU LYS HIS VAL ASP THR GLY MET THR LEU LYS SEQRES 8 A 273 GLU LEU ALA ASP ALA SER LEU ARG TYR SER ASP ASN ALA SEQRES 9 A 273 ALA GLN ASN LEU ILE LEU LYS GLN ILE GLY GLY PRO GLU SEQRES 10 A 273 SER LEU LYS LYS GLU LEU ARG LYS ILE GLY ASP GLU VAL SEQRES 11 A 273 THR ASN PRO GLU ARG PHE GLU PRO GLU LEU ASN GLU VAL SEQRES 12 A 273 ASN PRO GLY GLU THR GLN ASP THR SER THR ALA ARG ALA SEQRES 13 A 273 LEU VAL THR SER LEU ARG ALA PHE ALA LEU GLU ASP PRO SEQRES 14 A 273 GLY LYS LEU PRO SER GLU LYS ARG GLU LEU LEU ILE ASP SEQRES 15 A 273 TRP MET LYS ARG ASN THR THR GLY ASP ALA LEU ILE ARG SEQRES 16 A 273 ALA GLY VAL PRO ASP GLY TRP GLU VAL ALA ASP LYS THR SEQRES 17 A 273 GLY ALA ALA SER TYR GLY THR ARG ASN ASP ILE ALA ILE SEQRES 18 A 273 ILE TRP PRO PRO LYS GLY ASP PRO VAL VAL LEU ALA VAL SEQRES 19 A 273 LEU SER SER ARG ASP LYS LYS ASP ALA LYS TYR ASP ASP SEQRES 20 A 273 LYS LEU ILE ALA GLU ALA THR LYS VAL VAL MET LYS ALA SEQRES 21 A 273 LEU ASN MET ASN GLY LYS GLY PRO HIS HIS HIS HIS HIS SEQRES 1 B 126 GLN VAL GLN LEU GLN GLU SER GLY GLY GLY LEU VAL GLN SEQRES 2 B 126 PRO GLY GLY SER LEU ARG LEU SER CYS ALA ALA SER GLY SEQRES 3 B 126 SER ILE SER SER ILE THR THR MET GLY TRP TYR ARG GLN SEQRES 4 B 126 ASP PRO GLY LYS GLY ARG GLU LEU VAL ALA LEU ILE ASN SEQRES 5 B 126 SER VAL GLY ASP THR THR TYR ALA GLY SER VAL LYS GLY SEQRES 6 B 126 ARG PHE THR ILE SER ARG ASP ASN ALA LYS ASN THR VAL SEQRES 7 B 126 TYR LEU GLU MET SER SER LEU LYS PRO GLU ASP THR ALA SEQRES 8 B 126 VAL TYR TYR CYS ASN ALA PHE MET SER THR ASN SER GLY SEQRES 9 B 126 ARG THR GLY SER PHE TRP GLY GLN GLY THR GLN VAL THR SEQRES 10 B 126 VAL SER SER HIS HIS HIS HIS HIS HIS HET CL A 401 1 HET CL B 201 1 HETNAM CL CHLORIDE ION FORMUL 3 CL 2(CL 1-) FORMUL 5 HOH *269(H2 O) HELIX 1 1 MET A 29 PHE A 40 1 12 HELIX 2 2 THR A 71 LYS A 86 1 14 HELIX 3 3 ILE A 88 ASN A 92 5 5 HELIX 4 4 THR A 98 LEU A 102 5 5 HELIX 5 5 ILE A 108 HIS A 112 5 5 HELIX 6 6 LEU A 119 SER A 130 1 12 HELIX 7 7 ASP A 131 ILE A 142 1 12 HELIX 8 8 GLY A 144 ILE A 155 1 12 HELIX 9 9 PRO A 167 GLU A 171 5 5 HELIX 10 10 THR A 182 LEU A 195 1 14 HELIX 11 11 PRO A 200 ARG A 213 1 14 HELIX 12 12 LEU A 220 VAL A 225 5 6 HELIX 13 13 ASP A 275 ASN A 291 1 17 HELIX 14 14 ASN B 73 LYS B 75 5 3 HELIX 15 15 LYS B 86 THR B 90 5 5 SHEET 1 A 5 THR A 56 TYR A 60 0 SHEET 2 A 5 LYS A 43 ASP A 50 -1 N ILE A 46 O TYR A 60 SHEET 3 A 5 VAL A 259 SER A 266 -1 O LEU A 264 N GLY A 45 SHEET 4 A 5 THR A 243 TRP A 251 -1 N ILE A 250 O VAL A 259 SHEET 5 A 5 GLU A 230 ALA A 238 -1 N ALA A 232 O ILE A 249 SHEET 1 B 2 PHE A 66 ALA A 67 0 SHEET 2 B 2 THR A 180 SER A 181 -1 O SER A 181 N PHE A 66 SHEET 1 C 6 MET A 117 THR A 118 0 SHEET 2 C 6 ARG A 94 THR A 96 -1 N ILE A 95 O MET A 117 SHEET 3 C 6 THR B 106 TRP B 110 1 O SER B 108 N THR A 96 SHEET 4 C 6 ALA B 91 THR B 101 -1 N ALA B 97 O PHE B 109 SHEET 5 C 6 THR B 114 VAL B 118 -1 O THR B 114 N TYR B 93 SHEET 6 C 6 GLY B 10 VAL B 12 1 N GLY B 10 O THR B 117 SHEET 1 D 7 MET A 117 THR A 118 0 SHEET 2 D 7 ARG A 94 THR A 96 -1 N ILE A 95 O MET A 117 SHEET 3 D 7 THR B 106 TRP B 110 1 O SER B 108 N THR A 96 SHEET 4 D 7 ALA B 91 THR B 101 -1 N ALA B 97 O PHE B 109 SHEET 5 D 7 ILE B 28 GLN B 39 -1 N SER B 29 O SER B 100 SHEET 6 D 7 GLU B 46 ILE B 51 -1 O VAL B 48 N TRP B 36 SHEET 7 D 7 THR B 57 TYR B 59 -1 O THR B 58 N LEU B 50 SHEET 1 E 4 GLN B 3 SER B 7 0 SHEET 2 E 4 LEU B 18 SER B 25 -1 O ALA B 23 N GLN B 5 SHEET 3 E 4 THR B 77 MET B 82 -1 O MET B 82 N LEU B 18 SHEET 4 E 4 PHE B 67 ASP B 72 -1 N THR B 68 O GLU B 81 SSBOND 1 CYS B 22 CYS B 95 1555 1555 2.01 CISPEP 1 GLU A 166 PRO A 167 0 -0.43 CISPEP 2 ASP A 197 PRO A 197A 0 3.39 SITE 1 AC1 5 ASN A 136 LYS A 140 HOH A 502 TYR B 37 SITE 2 AC1 5 ARG B 45 SITE 1 AC2 4 LYS A 269 THR B 32 ASN B 52 SER B 53 CRYST1 51.818 42.940 74.818 90.00 105.29 90.00 P 1 21 1 2 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.019298 0.000000 0.005277 0.00000 SCALE2 0.000000 0.023288 0.000000 0.00000 SCALE3 0.000000 0.000000 0.013856 0.00000