HEADER LIPID BINDING PROTEIN 07-AUG-13 4M4D TITLE CRYSTAL STRUCTURE OF LIPOPOLYSACCHARIDE BINDING PROTEIN COMPND MOL_ID: 1; COMPND 2 MOLECULE: LIPOPOLYSACCHARIDE-BINDING PROTEIN; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: LBP; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 3 ORGANISM_COMMON: MOUSE; SOURCE 4 ORGANISM_TAXID: 10090; SOURCE 5 GENE: LBP; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_CELL_LINE: HI-FIVE; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PVL1393 KEYWDS BETA BARREL, IMMUNE RESPONSE, LIPOPOLYSACCHARIDE, BLOOD, LIPID KEYWDS 2 BINDING PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR J.K.ECKERT,Y.J.KIM,J.I.KIM,K.GURTLER,D.Y.OH,A.H.PLOEG,P.PICKKERS, AUTHOR 2 L.LUNDVALL,L.HAMANN,E.GIAMARELLOS-BOURBOULIS,A.V.KUBARENKO, AUTHOR 3 A.N.WEBER,M.KABESCH,O.KUMPF,H.J.AN,J.O.LEE,R.R.SCHUMANN REVDAT 5 06-NOV-24 4M4D 1 REMARK REVDAT 4 08-NOV-23 4M4D 1 HETSYN REVDAT 3 29-JUL-20 4M4D 1 COMPND REMARK SEQADV HETNAM REVDAT 3 2 1 SITE REVDAT 2 17-JUN-15 4M4D 1 JRNL REVDAT 1 30-OCT-13 4M4D 0 JRNL AUTH J.K.ECKERT,Y.J.KIM,J.I.KIM,K.GURTLER,D.Y.OH,S.SUR, JRNL AUTH 2 L.LUNDVALL,L.HAMANN,A.VAN DER PLOEG,P.PICKKERS, JRNL AUTH 3 E.GIAMARELLOS-BOURBOULIS,A.V.KUBARENKO,A.N.WEBER,M.KABESCH, JRNL AUTH 4 O.KUMPF,H.J.AN,J.O.LEE,R.R.SCHUMANN JRNL TITL THE CRYSTAL STRUCTURE OF LIPOPOLYSACCHARIDE BINDING PROTEIN JRNL TITL 2 REVEALS THE LOCATION OF A FREQUENT MUTATION THAT IMPAIRS JRNL TITL 3 INNATE IMMUNITY. JRNL REF IMMUNITY V. 39 647 2013 JRNL REFN ISSN 1074-7613 JRNL PMID 24120359 JRNL DOI 10.1016/J.IMMUNI.2013.09.005 REMARK 2 REMARK 2 RESOLUTION. 2.91 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE: 1.8.2_1309) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.91 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 19.89 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 91.1 REMARK 3 NUMBER OF REFLECTIONS : 21687 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.232 REMARK 3 R VALUE (WORKING SET) : 0.230 REMARK 3 FREE R VALUE : 0.277 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.990 REMARK 3 FREE R VALUE TEST SET COUNT : 1083 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 19.8910 - 5.7757 0.87 2545 134 0.2205 0.2420 REMARK 3 2 5.7757 - 4.6030 0.92 2606 138 0.2224 0.2495 REMARK 3 3 4.6030 - 4.0266 0.96 2732 143 0.1988 0.2316 REMARK 3 4 4.0266 - 3.6610 0.96 2707 144 0.2220 0.2918 REMARK 3 5 3.6610 - 3.4000 0.97 2729 141 0.2491 0.3335 REMARK 3 6 3.4000 - 3.2004 0.95 2642 140 0.2635 0.3275 REMARK 3 7 3.2004 - 3.0407 0.89 2493 130 0.2986 0.3643 REMARK 3 8 3.0407 - 2.9088 0.77 2150 113 0.2832 0.4079 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.410 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 34.340 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 73.30 REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.012 7126 REMARK 3 ANGLE : 1.671 9663 REMARK 3 CHIRALITY : 0.073 1108 REMARK 3 PLANARITY : 0.011 1244 REMARK 3 DIHEDRAL : 17.657 2652 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : 1 REMARK 3 NCS GROUP : 1 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4M4D COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 29-AUG-13. REMARK 100 THE DEPOSITION ID IS D_1000081450. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 04-NOV-04 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SPRING-8 REMARK 200 BEAMLINE : BL41XU REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.00599 REMARK 200 MONOCHROMATOR : SAGITALLY FOCUSED SI(111) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 21741 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.900 REMARK 200 RESOLUTION RANGE LOW (A) : 20.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 91.4 REMARK 200 DATA REDUNDANCY : 3.200 REMARK 200 R MERGE (I) : 0.06800 REMARK 200 R SYM (I) : 0.06800 REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 17.3000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.90 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.00 REMARK 200 COMPLETENESS FOR SHELL (%) : 76.9 REMARK 200 DATA REDUNDANCY IN SHELL : 2.90 REMARK 200 R MERGE FOR SHELL (I) : 0.27200 REMARK 200 R SYM FOR SHELL (I) : 0.27200 REMARK 200 <I/SIGMA(I)> FOR SHELL : 3.290 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 1EWF REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 52.96 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.61 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 22% PEG 8000, 100MM MOPS, PH 6.5, REMARK 280 VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 295K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 29.95300 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ALA A 22 REMARK 465 ASP A 23 REMARK 465 LEU A 24 REMARK 465 GLY A 25 REMARK 465 ARG A 291 REMARK 465 VAL A 292 REMARK 465 TYR A 293 REMARK 465 HIS A 294 REMARK 465 GLN A 295 REMARK 465 ALA A 296 REMARK 465 GLY A 297 REMARK 465 VAL A 481 REMARK 465 SER A 482 REMARK 465 GLY A 483 REMARK 465 ARG A 484 REMARK 465 LEU A 485 REMARK 465 VAL A 486 REMARK 465 PRO A 487 REMARK 465 ARG A 488 REMARK 465 ALA B 22 REMARK 465 ASP B 23 REMARK 465 LEU B 24 REMARK 465 GLY B 25 REMARK 465 ARG B 254 REMARK 465 ASN B 255 REMARK 465 PHE B 286 REMARK 465 ASN B 287 REMARK 465 ILE B 288 REMARK 465 ALA B 289 REMARK 465 SER B 290 REMARK 465 ARG B 291 REMARK 465 VAL B 292 REMARK 465 TYR B 293 REMARK 465 HIS B 294 REMARK 465 GLN B 295 REMARK 465 ALA B 296 REMARK 465 GLY B 297 REMARK 465 SER B 482 REMARK 465 GLY B 483 REMARK 465 ARG B 484 REMARK 465 LEU B 485 REMARK 465 VAL B 486 REMARK 465 PRO B 487 REMARK 465 ARG B 488 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 ND2 ASN B 355 O1 NAG B 504 1.19 REMARK 500 ND2 ASN B 355 C1 NAG B 504 1.89 REMARK 500 OD1 ASP B 311 OH TYR B 430 2.00 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 OH TYR A 430 O ALA B 320 1654 2.16 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 PRO A 377 C - N - CA ANGL. DEV. = 11.0 DEGREES REMARK 500 LEU A 391 CA - CB - CG ANGL. DEV. = 15.9 DEGREES REMARK 500 PRO B 28 C - N - CA ANGL. DEV. = 9.4 DEGREES REMARK 500 MET B 418 CG - SD - CE ANGL. DEV. = -11.1 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PRO A 60 -163.12 -75.01 REMARK 500 SER A 121 -155.70 63.66 REMARK 500 SER A 149 -5.96 -59.72 REMARK 500 CYS A 164 -90.82 -129.01 REMARK 500 ASP A 165 93.37 -37.74 REMARK 500 ASP A 208 -56.29 -136.24 REMARK 500 ILE A 222 -60.18 -95.56 REMARK 500 VAL A 225 -60.94 -102.33 REMARK 500 TYR A 230 43.83 -104.03 REMARK 500 HIS A 256 100.09 -162.29 REMARK 500 ARG A 257 90.29 -51.23 REMARK 500 PRO A 259 70.19 -65.78 REMARK 500 THR A 262 36.19 -145.43 REMARK 500 THR A 264 114.14 -23.45 REMARK 500 SER A 268 80.68 -167.16 REMARK 500 PRO A 270 -165.14 -71.20 REMARK 500 TYR A 284 -125.32 -108.84 REMARK 500 ALA A 285 -54.27 -161.65 REMARK 500 LEU A 299 72.64 48.35 REMARK 500 ASP A 306 48.29 -101.67 REMARK 500 PRO A 326 1.46 -62.95 REMARK 500 ASP A 334 81.66 49.33 REMARK 500 VAL A 351 -78.45 -100.22 REMARK 500 VAL A 378 -55.52 -127.45 REMARK 500 SER A 414 119.14 -161.88 REMARK 500 VAL A 416 41.19 -144.88 REMARK 500 SER A 435 -79.04 -137.08 REMARK 500 ARG A 466 -150.44 -142.90 REMARK 500 LYS A 467 -104.54 -64.84 REMARK 500 ASN B 27 95.56 55.92 REMARK 500 PRO B 60 -158.54 -75.59 REMARK 500 PHE B 66 28.90 -142.63 REMARK 500 ALA B 70 -95.66 -62.97 REMARK 500 ASN B 85 62.27 27.60 REMARK 500 PHE B 122 1.88 59.27 REMARK 500 SER B 149 -6.16 -59.35 REMARK 500 CYS B 164 -155.85 -135.93 REMARK 500 ASP B 208 -54.27 -132.49 REMARK 500 ASN B 224 1.02 -62.71 REMARK 500 VAL B 225 -69.12 -103.94 REMARK 500 TYR B 230 41.59 -105.20 REMARK 500 LYS B 239 -138.22 -78.53 REMARK 500 LYS B 248 -76.37 -58.97 REMARK 500 GLU B 250 -106.88 -143.66 REMARK 500 ILE B 251 119.68 -165.84 REMARK 500 PHE B 252 -89.31 -96.07 REMARK 500 PRO B 259 78.54 -46.62 REMARK 500 ALA B 261 44.36 -65.95 REMARK 500 THR B 264 114.67 59.93 REMARK 500 PRO B 270 -169.92 -78.35 REMARK 500 REMARK 500 THIS ENTRY HAS 63 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL DBREF 4M4D A 25 481 UNP Q61805 LBP_MOUSE 25 481 DBREF 4M4D B 25 481 UNP Q61805 LBP_MOUSE 25 481 SEQADV 4M4D ALA A 22 UNP Q61805 EXPRESSION TAG SEQADV 4M4D ASP A 23 UNP Q61805 EXPRESSION TAG SEQADV 4M4D LEU A 24 UNP Q61805 EXPRESSION TAG SEQADV 4M4D SER A 482 UNP Q61805 EXPRESSION TAG SEQADV 4M4D GLY A 483 UNP Q61805 EXPRESSION TAG SEQADV 4M4D ARG A 484 UNP Q61805 EXPRESSION TAG SEQADV 4M4D LEU A 485 UNP Q61805 EXPRESSION TAG SEQADV 4M4D VAL A 486 UNP Q61805 EXPRESSION TAG SEQADV 4M4D PRO A 487 UNP Q61805 EXPRESSION TAG SEQADV 4M4D ARG A 488 UNP Q61805 EXPRESSION TAG SEQADV 4M4D ALA B 22 UNP Q61805 EXPRESSION TAG SEQADV 4M4D ASP B 23 UNP Q61805 EXPRESSION TAG SEQADV 4M4D LEU B 24 UNP Q61805 EXPRESSION TAG SEQADV 4M4D SER B 482 UNP Q61805 EXPRESSION TAG SEQADV 4M4D GLY B 483 UNP Q61805 EXPRESSION TAG SEQADV 4M4D ARG B 484 UNP Q61805 EXPRESSION TAG SEQADV 4M4D LEU B 485 UNP Q61805 EXPRESSION TAG SEQADV 4M4D VAL B 486 UNP Q61805 EXPRESSION TAG SEQADV 4M4D PRO B 487 UNP Q61805 EXPRESSION TAG SEQADV 4M4D ARG B 488 UNP Q61805 EXPRESSION TAG SEQRES 1 A 467 ALA ASP LEU GLY VAL ASN PRO GLY VAL VAL ALA ARG ILE SEQRES 2 A 467 THR ASP LYS GLY LEU ALA TYR ALA ALA LYS GLU GLY LEU SEQRES 3 A 467 VAL ALA LEU GLN ARG GLU LEU TYR LYS ILE THR LEU PRO SEQRES 4 A 467 ASP PHE SER GLY ASP PHE LYS ILE LYS ALA VAL GLY ARG SEQRES 5 A 467 GLY GLN TYR GLU PHE HIS SER LEU GLU ILE GLN ASN CYS SEQRES 6 A 467 GLU LEU ARG GLY SER SER LEU LYS LEU LEU PRO GLY GLN SEQRES 7 A 467 GLY LEU SER LEU ALA ILE SER ASP SER SER ILE GLY VAL SEQRES 8 A 467 ARG GLY LYS TRP LYS VAL ARG LYS SER PHE LEU LYS LEU SEQRES 9 A 467 HIS GLY SER PHE ASP LEU ASP VAL LYS GLY VAL THR ILE SEQRES 10 A 467 SER VAL ASP LEU LEU LEU GLY MET ASP PRO SER GLY ARG SEQRES 11 A 467 PRO THR VAL SER ALA SER GLY CYS SER SER ARG ILE CYS SEQRES 12 A 467 ASP LEU ASP VAL HIS ILE SER GLY ASN VAL GLY TRP LEU SEQRES 13 A 467 LEU ASN LEU PHE HIS ASN GLN ILE GLU SER LYS LEU GLN SEQRES 14 A 467 LYS VAL LEU GLU ASN LYS VAL CYS GLU MET ILE GLN LYS SEQRES 15 A 467 SER VAL THR SER ASP LEU GLN PRO TYR LEU GLN THR LEU SEQRES 16 A 467 PRO VAL THR ALA GLU ILE ASP ASN VAL LEU GLY ILE ASP SEQRES 17 A 467 TYR SER LEU VAL ALA ALA PRO GLN ALA LYS ALA GLN VAL SEQRES 18 A 467 LEU ASP VAL MET PHE LYS GLY GLU ILE PHE ASN ARG ASN SEQRES 19 A 467 HIS ARG SER PRO VAL ALA THR PRO THR PRO THR MET SER SEQRES 20 A 467 LEU PRO GLU ASP SER LYS GLN MET VAL TYR PHE ALA ILE SEQRES 21 A 467 SER ASP TYR ALA PHE ASN ILE ALA SER ARG VAL TYR HIS SEQRES 22 A 467 GLN ALA GLY TYR LEU ASN PHE SER ILE THR ASP ASP MET SEQRES 23 A 467 LEU PRO HIS ASP SER GLY ILE ARG LEU ASN THR LYS ALA SEQRES 24 A 467 PHE ARG PRO PHE THR PRO GLN ILE TYR LYS LYS TYR PRO SEQRES 25 A 467 ASP MET LYS LEU GLU LEU LEU GLY THR VAL VAL SER ALA SEQRES 26 A 467 PRO ILE LEU ASN VAL SER PRO GLY ASN LEU SER LEU ALA SEQRES 27 A 467 PRO GLN MET GLU ILE GLU GLY PHE VAL ILE LEU PRO THR SEQRES 28 A 467 SER ALA ARG GLU PRO VAL PHE ARG LEU GLY VAL VAL THR SEQRES 29 A 467 ASN VAL PHE ALA SER LEU THR PHE ASN ASN SER LYS VAL SEQRES 30 A 467 THR GLY MET LEU HIS PRO ASP LYS ALA GLN VAL ARG LEU SEQRES 31 A 467 ILE GLU SER LYS VAL GLY MET PHE ASN VAL ASN LEU PHE SEQRES 32 A 467 GLN ALA PHE LEU ASN TYR TYR LEU LEU ASN SER LEU TYR SEQRES 33 A 467 PRO ASP VAL ASN ALA GLU LEU ALA GLN GLY PHE PRO LEU SEQRES 34 A 467 PRO LEU PRO ARG HIS ILE GLN LEU HIS ASP LEU ASP PHE SEQRES 35 A 467 GLN ILE ARG LYS ASP PHE LEU TYR LEU GLY ALA ASN VAL SEQRES 36 A 467 GLN TYR MET ARG VAL SER GLY ARG LEU VAL PRO ARG SEQRES 1 B 467 ALA ASP LEU GLY VAL ASN PRO GLY VAL VAL ALA ARG ILE SEQRES 2 B 467 THR ASP LYS GLY LEU ALA TYR ALA ALA LYS GLU GLY LEU SEQRES 3 B 467 VAL ALA LEU GLN ARG GLU LEU TYR LYS ILE THR LEU PRO SEQRES 4 B 467 ASP PHE SER GLY ASP PHE LYS ILE LYS ALA VAL GLY ARG SEQRES 5 B 467 GLY GLN TYR GLU PHE HIS SER LEU GLU ILE GLN ASN CYS SEQRES 6 B 467 GLU LEU ARG GLY SER SER LEU LYS LEU LEU PRO GLY GLN SEQRES 7 B 467 GLY LEU SER LEU ALA ILE SER ASP SER SER ILE GLY VAL SEQRES 8 B 467 ARG GLY LYS TRP LYS VAL ARG LYS SER PHE LEU LYS LEU SEQRES 9 B 467 HIS GLY SER PHE ASP LEU ASP VAL LYS GLY VAL THR ILE SEQRES 10 B 467 SER VAL ASP LEU LEU LEU GLY MET ASP PRO SER GLY ARG SEQRES 11 B 467 PRO THR VAL SER ALA SER GLY CYS SER SER ARG ILE CYS SEQRES 12 B 467 ASP LEU ASP VAL HIS ILE SER GLY ASN VAL GLY TRP LEU SEQRES 13 B 467 LEU ASN LEU PHE HIS ASN GLN ILE GLU SER LYS LEU GLN SEQRES 14 B 467 LYS VAL LEU GLU ASN LYS VAL CYS GLU MET ILE GLN LYS SEQRES 15 B 467 SER VAL THR SER ASP LEU GLN PRO TYR LEU GLN THR LEU SEQRES 16 B 467 PRO VAL THR ALA GLU ILE ASP ASN VAL LEU GLY ILE ASP SEQRES 17 B 467 TYR SER LEU VAL ALA ALA PRO GLN ALA LYS ALA GLN VAL SEQRES 18 B 467 LEU ASP VAL MET PHE LYS GLY GLU ILE PHE ASN ARG ASN SEQRES 19 B 467 HIS ARG SER PRO VAL ALA THR PRO THR PRO THR MET SER SEQRES 20 B 467 LEU PRO GLU ASP SER LYS GLN MET VAL TYR PHE ALA ILE SEQRES 21 B 467 SER ASP TYR ALA PHE ASN ILE ALA SER ARG VAL TYR HIS SEQRES 22 B 467 GLN ALA GLY TYR LEU ASN PHE SER ILE THR ASP ASP MET SEQRES 23 B 467 LEU PRO HIS ASP SER GLY ILE ARG LEU ASN THR LYS ALA SEQRES 24 B 467 PHE ARG PRO PHE THR PRO GLN ILE TYR LYS LYS TYR PRO SEQRES 25 B 467 ASP MET LYS LEU GLU LEU LEU GLY THR VAL VAL SER ALA SEQRES 26 B 467 PRO ILE LEU ASN VAL SER PRO GLY ASN LEU SER LEU ALA SEQRES 27 B 467 PRO GLN MET GLU ILE GLU GLY PHE VAL ILE LEU PRO THR SEQRES 28 B 467 SER ALA ARG GLU PRO VAL PHE ARG LEU GLY VAL VAL THR SEQRES 29 B 467 ASN VAL PHE ALA SER LEU THR PHE ASN ASN SER LYS VAL SEQRES 30 B 467 THR GLY MET LEU HIS PRO ASP LYS ALA GLN VAL ARG LEU SEQRES 31 B 467 ILE GLU SER LYS VAL GLY MET PHE ASN VAL ASN LEU PHE SEQRES 32 B 467 GLN ALA PHE LEU ASN TYR TYR LEU LEU ASN SER LEU TYR SEQRES 33 B 467 PRO ASP VAL ASN ALA GLU LEU ALA GLN GLY PHE PRO LEU SEQRES 34 B 467 PRO LEU PRO ARG HIS ILE GLN LEU HIS ASP LEU ASP PHE SEQRES 35 B 467 GLN ILE ARG LYS ASP PHE LEU TYR LEU GLY ALA ASN VAL SEQRES 36 B 467 GLN TYR MET ARG VAL SER GLY ARG LEU VAL PRO ARG HET NAG A 501 15 HET NAG A 502 15 HET NAG A 503 15 HET NAG A 504 15 HET NAG A 505 15 HET PC1 A 506 54 HET PC1 B 501 54 HET NAG B 502 15 HET NAG B 503 15 HET NAG B 504 15 HET NAG B 505 15 HET NAG B 506 15 HETNAM NAG 2-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE HETNAM PC1 1,2-DIACYL-SN-GLYCERO-3-PHOSPHOCHOLINE HETSYN NAG N-ACETYL-BETA-D-GLUCOSAMINE; 2-ACETAMIDO-2-DEOXY-BETA- HETSYN 2 NAG D-GLUCOSE; 2-ACETAMIDO-2-DEOXY-D-GLUCOSE; 2-ACETAMIDO- HETSYN 3 NAG 2-DEOXY-GLUCOSE; N-ACETYL-D-GLUCOSAMINE HETSYN PC1 3-SN-PHOSPHATIDYLCHOLINE FORMUL 3 NAG 10(C8 H15 N O6) FORMUL 8 PC1 2(C44 H88 N O8 P) HELIX 1 1 ASP A 36 TYR A 55 1 20 HELIX 2 2 VAL A 174 ILE A 185 1 12 HELIX 3 3 ILE A 185 ASP A 208 1 24 HELIX 4 4 ASP A 208 GLN A 214 1 7 HELIX 5 5 ASP A 306 LEU A 308 5 3 HELIX 6 6 GLN A 327 TYR A 332 1 6 HELIX 7 7 ASN A 420 SER A 435 1 16 HELIX 8 8 SER A 435 GLY A 447 1 13 HELIX 9 9 THR B 35 TYR B 55 1 21 HELIX 10 10 VAL B 174 ILE B 185 1 12 HELIX 11 11 ILE B 185 ASP B 208 1 24 HELIX 12 12 ASP B 208 GLN B 214 1 7 HELIX 13 13 THR B 304 LEU B 308 5 5 HELIX 14 14 GLN B 327 TYR B 332 1 6 HELIX 15 15 ASN B 420 SER B 435 1 16 HELIX 16 16 SER B 435 GLY B 447 1 13 SHEET 1 A 6 GLN A 237 ALA A 238 0 SHEET 2 A 6 VAL A 242 PHE A 247 -1 O ASP A 244 N GLN A 237 SHEET 3 A 6 VAL A 30 THR A 35 -1 N ILE A 34 O LEU A 243 SHEET 4 A 6 VAL A 277 ILE A 281 -1 O TYR A 278 N ARG A 33 SHEET 5 A 6 LEU A 470 TYR A 478 -1 O LEU A 470 N ILE A 281 SHEET 6 A 6 ILE A 456 ILE A 465 -1 N HIS A 459 O ASN A 475 SHEET 1 B 5 PHE A 62 ILE A 68 0 SHEET 2 B 5 GLY A 72 GLU A 87 -1 O PHE A 78 N PHE A 62 SHEET 3 B 5 GLY A 100 ARG A 119 -1 O GLY A 111 N ASN A 85 SHEET 4 B 5 GLY A 127 MET A 146 -1 O LEU A 142 N LEU A 101 SHEET 5 B 5 PRO A 152 ARG A 162 -1 O SER A 155 N LEU A 143 SHEET 1 C 4 SER A 91 LEU A 96 0 SHEET 2 C 4 GLY A 100 ARG A 119 -1 O GLY A 100 N LEU A 96 SHEET 3 C 4 GLY A 127 MET A 146 -1 O LEU A 142 N LEU A 101 SHEET 4 C 4 LEU A 166 ILE A 170 -1 O HIS A 169 N ASP A 130 SHEET 1 D 2 THR A 219 GLU A 221 0 SHEET 2 D 2 GLY A 227 ASP A 229 -1 O ILE A 228 N ALA A 220 SHEET 1 E 5 ASN A 300 THR A 304 0 SHEET 2 E 5 LYS A 336 SER A 345 -1 O LEU A 339 N ILE A 303 SHEET 3 E 5 GLN A 361 ILE A 369 -1 O PHE A 367 N GLU A 338 SHEET 4 E 5 ARG A 375 ASN A 394 -1 O LEU A 381 N ILE A 364 SHEET 5 E 5 ASN A 355 LEU A 358 -1 N LEU A 358 O VAL A 387 SHEET 1 F 6 ASN A 300 THR A 304 0 SHEET 2 F 6 LYS A 336 SER A 345 -1 O LEU A 339 N ILE A 303 SHEET 3 F 6 GLN A 361 ILE A 369 -1 O PHE A 367 N GLU A 338 SHEET 4 F 6 ARG A 375 ASN A 394 -1 O LEU A 381 N ILE A 364 SHEET 5 F 6 LYS A 397 SER A 414 -1 O ILE A 412 N ARG A 380 SHEET 6 F 6 PHE A 448 PRO A 449 -1 O PHE A 448 N VAL A 398 SHEET 1 G 6 GLN B 237 ALA B 238 0 SHEET 2 G 6 LEU B 243 PHE B 247 -1 O ASP B 244 N GLN B 237 SHEET 3 G 6 VAL B 30 ILE B 34 -1 N ILE B 34 O LEU B 243 SHEET 4 G 6 VAL B 277 ILE B 281 -1 O TYR B 278 N ARG B 33 SHEET 5 G 6 PHE B 469 TYR B 478 -1 O LEU B 472 N PHE B 279 SHEET 6 G 6 ILE B 456 ASP B 462 -1 N ASP B 462 O GLY B 473 SHEET 1 H 6 GLN B 237 ALA B 238 0 SHEET 2 H 6 LEU B 243 PHE B 247 -1 O ASP B 244 N GLN B 237 SHEET 3 H 6 VAL B 30 ILE B 34 -1 N ILE B 34 O LEU B 243 SHEET 4 H 6 VAL B 277 ILE B 281 -1 O TYR B 278 N ARG B 33 SHEET 5 H 6 PHE B 469 TYR B 478 -1 O LEU B 472 N PHE B 279 SHEET 6 H 6 ILE B 465 ARG B 466 -1 N ARG B 466 O PHE B 469 SHEET 1 I 5 PHE B 62 ASP B 65 0 SHEET 2 I 5 GLN B 75 GLU B 87 -1 O PHE B 78 N PHE B 62 SHEET 3 I 5 GLY B 100 LYS B 120 -1 O ARG B 119 N GLN B 75 SHEET 4 I 5 LEU B 123 LEU B 143 -1 O GLY B 127 N TRP B 116 SHEET 5 I 5 ALA B 156 ARG B 162 -1 O ARG B 162 N THR B 137 SHEET 1 J 4 LEU B 93 LEU B 96 0 SHEET 2 J 4 GLY B 100 LYS B 120 -1 O GLY B 100 N LEU B 96 SHEET 3 J 4 LEU B 123 LEU B 143 -1 O GLY B 127 N TRP B 116 SHEET 4 J 4 ASP B 167 ILE B 170 -1 O HIS B 169 N ASP B 130 SHEET 1 K 2 GLY B 145 MET B 146 0 SHEET 2 K 2 PRO B 152 THR B 153 -1 O THR B 153 N GLY B 145 SHEET 1 L 2 THR B 219 GLU B 221 0 SHEET 2 L 2 GLY B 227 ASP B 229 -1 O ILE B 228 N ALA B 220 SHEET 1 M 5 LEU B 299 ILE B 303 0 SHEET 2 M 5 LEU B 337 SER B 345 -1 O LEU B 339 N ILE B 303 SHEET 3 M 5 GLN B 361 ILE B 369 -1 O PHE B 367 N GLU B 338 SHEET 4 M 5 ARG B 375 VAL B 384 -1 O VAL B 383 N MET B 362 SHEET 5 M 5 GLN B 408 SER B 414 -1 O GLU B 413 N ARG B 380 SHEET 1 N 4 ILE B 348 SER B 352 0 SHEET 2 N 4 ASN B 355 LEU B 358 -1 O ASN B 355 N VAL B 351 SHEET 3 N 4 VAL B 387 SER B 390 -1 O ALA B 389 N LEU B 356 SHEET 4 N 4 LEU B 402 HIS B 403 -1 O HIS B 403 N PHE B 388 SHEET 1 O 3 THR B 392 PHE B 393 0 SHEET 2 O 3 LYS B 397 THR B 399 -1 O THR B 399 N THR B 392 SHEET 3 O 3 PHE B 448 PRO B 449 -1 O PHE B 448 N VAL B 398 SSBOND 1 CYS A 159 CYS A 198 1555 1555 2.12 SSBOND 2 CYS B 159 CYS B 198 1555 1555 2.09 CRYST1 77.282 59.906 119.932 90.00 102.63 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.012940 0.000000 0.002899 0.00000 SCALE2 0.000000 0.016693 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008545 0.00000