HEADER RNA BINDING PROTEIN 08-AUG-13 4M5Q TITLE HIGH-RESOLUTION APO INFLUENZA 2009 H1N1 ENDONUCLEASE STRUCTURE COMPND MOL_ID: 1; COMPND 2 MOLECULE: POLYMERASE PA; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: UNP RESIDUES 1-204; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: INFLUENZA A VIRUS SOURCE 3 (A/LIMA/WRAIR1695P/2009(H1N1)); SOURCE 4 ORGANISM_TAXID: 985958; SOURCE 5 GENE: PA; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21 (DE3) RIL; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PCDF-2 KEYWDS CAP-SNATCHING, RNA BINDING PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR J.D.BAUMAN,D.PATEL,K.DAS,E.ARNOLD REVDAT 4 28-FEB-24 4M5Q 1 REMARK SEQADV LINK REVDAT 3 11-DEC-13 4M5Q 1 JRNL REVDAT 2 04-DEC-13 4M5Q 1 REVDAT 1 18-SEP-13 4M5Q 0 JRNL AUTH J.D.BAUMAN,D.PATEL,S.F.BAKER,R.S.VIJAYAN,A.XIANG,A.K.PARHI, JRNL AUTH 2 L.MARTINEZ-SOBRIDO,E.J.LAVOIE,K.DAS,E.ARNOLD JRNL TITL CRYSTALLOGRAPHIC FRAGMENT SCREENING AND STRUCTURE-BASED JRNL TITL 2 OPTIMIZATION YIELDS A NEW CLASS OF INFLUENZA ENDONUCLEASE JRNL TITL 3 INHIBITORS. JRNL REF ACS CHEM.BIOL. V. 8 2501 2013 JRNL REFN ISSN 1554-8929 JRNL PMID 23978130 JRNL DOI 10.1021/CB400400J REMARK 2 REMARK 2 RESOLUTION. 1.53 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE: 1.8.2_1309) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.53 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 46.90 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.5 REMARK 3 NUMBER OF REFLECTIONS : 44527 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.171 REMARK 3 R VALUE (WORKING SET) : 0.171 REMARK 3 FREE R VALUE : 0.184 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 2.000 REMARK 3 FREE R VALUE TEST SET COUNT : 889 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 46.9222 - 2.7873 1.00 7543 154 0.1722 0.1867 REMARK 3 2 2.7873 - 2.2124 1.00 7330 148 0.1708 0.1595 REMARK 3 3 2.2124 - 1.9327 1.00 7263 148 0.1565 0.1910 REMARK 3 4 1.9327 - 1.7560 1.00 7258 147 0.1615 0.1940 REMARK 3 5 1.7560 - 1.6301 1.00 7206 148 0.1788 0.1971 REMARK 3 6 1.6301 - 1.5340 0.98 7038 144 0.2092 0.2178 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.100 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 20.760 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.013 1728 REMARK 3 ANGLE : 1.399 2335 REMARK 3 CHIRALITY : 0.092 244 REMARK 3 PLANARITY : 0.008 298 REMARK 3 DIHEDRAL : 14.263 655 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 7 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID -4 THROUGH 31 ) REMARK 3 ORIGIN FOR THE GROUP (A): 21.4684 18.8248 -18.3437 REMARK 3 T TENSOR REMARK 3 T11: 0.1788 T22: 0.1958 REMARK 3 T33: 0.1209 T12: -0.0347 REMARK 3 T13: 0.0145 T23: -0.0287 REMARK 3 L TENSOR REMARK 3 L11: 4.8137 L22: 4.0887 REMARK 3 L33: 4.1791 L12: 1.8646 REMARK 3 L13: -0.1736 L23: -1.5612 REMARK 3 S TENSOR REMARK 3 S11: -0.1437 S12: 0.2958 S13: -0.1487 REMARK 3 S21: -0.1943 S22: 0.1161 S23: 0.0506 REMARK 3 S31: 0.1995 S32: -0.0635 S33: 0.0106 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 32 THROUGH 49 ) REMARK 3 ORIGIN FOR THE GROUP (A): 17.8081 18.7160 -8.7687 REMARK 3 T TENSOR REMARK 3 T11: 0.1843 T22: 0.1410 REMARK 3 T33: 0.1708 T12: -0.0565 REMARK 3 T13: -0.0104 T23: -0.0150 REMARK 3 L TENSOR REMARK 3 L11: 3.1489 L22: 2.5645 REMARK 3 L33: 7.7428 L12: 2.1846 REMARK 3 L13: -1.9228 L23: -3.0708 REMARK 3 S TENSOR REMARK 3 S11: -0.0807 S12: 0.1704 S13: -0.0663 REMARK 3 S21: -0.0813 S22: 0.0885 S23: -0.0306 REMARK 3 S31: -0.0355 S32: 0.0338 S33: 0.0311 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 50 THROUGH 62 ) REMARK 3 ORIGIN FOR THE GROUP (A): 14.5791 4.5757 10.1107 REMARK 3 T TENSOR REMARK 3 T11: 0.5109 T22: 0.5259 REMARK 3 T33: 0.4122 T12: -0.1450 REMARK 3 T13: -0.0618 T23: 0.1779 REMARK 3 L TENSOR REMARK 3 L11: 4.5680 L22: 8.5324 REMARK 3 L33: 8.0116 L12: 0.8343 REMARK 3 L13: -1.2495 L23: -4.3629 REMARK 3 S TENSOR REMARK 3 S11: 0.3376 S12: -1.0538 S13: -0.9964 REMARK 3 S21: 1.2379 S22: -0.1350 S23: -0.1523 REMARK 3 S31: 0.4213 S32: -0.6936 S33: 0.0252 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 63 THROUGH 83 ) REMARK 3 ORIGIN FOR THE GROUP (A): 14.5449 4.6028 0.8395 REMARK 3 T TENSOR REMARK 3 T11: 0.3111 T22: 0.2733 REMARK 3 T33: 0.4008 T12: -0.0430 REMARK 3 T13: -0.0787 T23: 0.1058 REMARK 3 L TENSOR REMARK 3 L11: 1.5694 L22: 3.6382 REMARK 3 L33: 4.3268 L12: 0.6370 REMARK 3 L13: -0.0967 L23: -2.8925 REMARK 3 S TENSOR REMARK 3 S11: 0.2329 S12: -0.1294 S13: -0.5844 REMARK 3 S21: 0.0671 S22: -0.5355 S23: -0.7253 REMARK 3 S31: 0.4901 S32: 0.7211 S33: 0.1637 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 84 THROUGH 126 ) REMARK 3 ORIGIN FOR THE GROUP (A): 3.6663 13.8237 -3.5046 REMARK 3 T TENSOR REMARK 3 T11: 0.1543 T22: 0.2259 REMARK 3 T33: 0.2109 T12: -0.0575 REMARK 3 T13: -0.0359 T23: 0.0052 REMARK 3 L TENSOR REMARK 3 L11: 2.1546 L22: 1.4149 REMARK 3 L33: 5.2604 L12: -0.2212 REMARK 3 L13: 0.3185 L23: 0.8323 REMARK 3 S TENSOR REMARK 3 S11: 0.2527 S12: -0.2611 S13: 0.0151 REMARK 3 S21: 0.1328 S22: -0.2914 S23: 0.3567 REMARK 3 S31: 0.3429 S32: -0.7964 S33: 0.0089 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 127 THROUGH 149 ) REMARK 3 ORIGIN FOR THE GROUP (A): 5.2113 26.3026 -1.0660 REMARK 3 T TENSOR REMARK 3 T11: 0.2448 T22: 0.2661 REMARK 3 T33: 0.3263 T12: 0.0322 REMARK 3 T13: -0.0122 T23: 0.0041 REMARK 3 L TENSOR REMARK 3 L11: 5.2360 L22: 8.7428 REMARK 3 L33: 8.1638 L12: -0.7536 REMARK 3 L13: -1.6822 L23: -2.1891 REMARK 3 S TENSOR REMARK 3 S11: 0.0918 S12: 0.1527 S13: 0.6503 REMARK 3 S21: -0.0293 S22: 0.1804 S23: 1.0451 REMARK 3 S31: -0.5539 S32: -0.8540 S33: -0.1911 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 150 THROUGH 196 ) REMARK 3 ORIGIN FOR THE GROUP (A): 20.8667 26.1661 -1.8345 REMARK 3 T TENSOR REMARK 3 T11: 0.2115 T22: 0.1655 REMARK 3 T33: 0.1914 T12: -0.0766 REMARK 3 T13: -0.0295 T23: -0.0283 REMARK 3 L TENSOR REMARK 3 L11: 2.4249 L22: 0.7527 REMARK 3 L33: 5.4031 L12: 0.8441 REMARK 3 L13: -1.9725 L23: -0.3712 REMARK 3 S TENSOR REMARK 3 S11: 0.0816 S12: -0.0339 S13: 0.2654 REMARK 3 S21: -0.0251 S22: -0.0510 S23: 0.0754 REMARK 3 S31: -0.5381 S32: 0.2263 S33: -0.0229 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4M5Q COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 12-AUG-13. REMARK 100 THE DEPOSITION ID IS D_1000081499. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 24-APR-12 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.7 REMARK 200 NUMBER OF CRYSTALS USED : NULL REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : NSLS REMARK 200 BEAMLINE : X25 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.100 REMARK 200 MONOCHROMATOR : HORIZONTAL BENT SI(111), REMARK 200 ASYMMETRICALLY CUT WITH WATER REMARK 200 COOLED CU BLOCK REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 250493 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.530 REMARK 200 RESOLUTION RANGE LOW (A) : 50.750 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.0 REMARK 200 DATA REDUNDANCY : 5.600 REMARK 200 R MERGE (I) : 0.04100 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 16.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.53 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.62 REMARK 200 COMPLETENESS FOR SHELL (%) : 97.7 REMARK 200 DATA REDUNDANCY IN SHELL : 4.60 REMARK 200 R MERGE FOR SHELL (I) : 0.36900 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 3.200 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHENIX 1.8.2_1309 REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 52.63 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.60 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 200 MM MES, 27% PEG8K, 200 MM AMMONIUM REMARK 280 SULFATE, 1 MM MANGANESE CHLORIDE, 10 MM MAGNESIUM ACETATE, 10 MM REMARK 280 TAURINE, AND 50 MM SODIUM FLUORIDE, PH 6.7, VAPOR DIFFUSION, REMARK 280 SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 2 2 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -X,Y,-Z+1/2 REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 33.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 33.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 44.20000 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 50.74500 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 44.20000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 50.74500 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 33.00000 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 44.20000 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 50.74500 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 33.00000 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 44.20000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 50.74500 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3020 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 19600 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -47.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 578 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -36 REMARK 465 ALA A -35 REMARK 465 HIS A -34 REMARK 465 HIS A -33 REMARK 465 HIS A -32 REMARK 465 HIS A -31 REMARK 465 HIS A -30 REMARK 465 HIS A -29 REMARK 465 SER A -28 REMARK 465 ARG A -27 REMARK 465 ALA A -26 REMARK 465 TRP A -25 REMARK 465 ARG A -24 REMARK 465 HIS A -23 REMARK 465 PRO A -22 REMARK 465 GLN A -21 REMARK 465 PHE A -20 REMARK 465 GLY A -19 REMARK 465 GLY A -18 REMARK 465 HIS A -17 REMARK 465 HIS A -16 REMARK 465 HIS A -15 REMARK 465 HIS A -14 REMARK 465 HIS A -13 REMARK 465 HIS A -12 REMARK 465 ALA A -11 REMARK 465 LEU A -10 REMARK 465 GLU A -9 REMARK 465 VAL A -8 REMARK 465 LEU A -7 REMARK 465 PHE A -6 REMARK 465 GLN A -5 REMARK 465 GLY A 197 REMARK 465 GLU A 198 REMARK 465 GLU A 199 REMARK 465 THR A 200 REMARK 465 VAL A 201 REMARK 465 GLU A 202 REMARK 465 GLU A 203 REMARK 465 ARG A 204 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 HG1 THR A 151 OE1 GLU A 153 1.45 REMARK 500 O HOH A 435 O HOH A 458 2.01 REMARK 500 O HOH A 414 O HOH A 615 2.04 REMARK 500 O HOH A 561 O HOH A 565 2.11 REMARK 500 O HOH A 582 O HOH A 619 2.15 REMARK 500 O HOH A 555 O HOH A 620 2.15 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 124 NE - CZ - NH1 ANGL. DEV. = 4.6 DEGREES REMARK 500 ARG A 124 NE - CZ - NH2 ANGL. DEV. = -4.7 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PHE A 51 -3.80 80.71 REMARK 500 THR A 97 -73.44 -83.60 REMARK 500 LYS A 139 37.89 38.39 REMARK 500 GLU A 141 13.51 58.35 REMARK 500 THR A 162 -55.70 66.44 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN A 301 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 41 NE2 REMARK 620 2 ASP A 108 OD2 95.9 REMARK 620 3 GLU A 119 OE2 174.8 89.2 REMARK 620 4 ILE A 120 O 89.2 90.5 89.9 REMARK 620 5 HOH A 409 O 87.2 176.3 87.6 87.6 REMARK 620 6 HOH A 435 O 88.3 98.9 91.7 170.4 83.1 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN A 303 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 74 NE2 REMARK 620 2 HOH A 473 O 73.4 REMARK 620 N 1 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN A 302 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 80 OE1 REMARK 620 2 ASP A 108 OD1 87.2 REMARK 620 3 HOH A 428 O 89.8 95.5 REMARK 620 4 HOH A 435 O 95.5 91.0 171.8 REMARK 620 5 HOH A 509 O 173.0 87.4 86.4 89.0 REMARK 620 6 HOH A 521 O 92.4 167.6 96.9 76.7 93.8 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MN A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MN A 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MN A 303 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 304 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4KIL RELATED DB: PDB REMARK 900 RELATED ID: 4LN7 RELATED DB: PDB REMARK 900 RELATED ID: 4M5O RELATED DB: PDB REMARK 900 RELATED ID: 4M5R RELATED DB: PDB REMARK 900 RELATED ID: 4M5U RELATED DB: PDB REMARK 900 RELATED ID: 4M5V RELATED DB: PDB REMARK 900 RELATED ID: 4MK1 RELATED DB: PDB REMARK 900 RELATED ID: 4MK2 RELATED DB: PDB REMARK 900 RELATED ID: 4KM5 RELATED DB: PDB DBREF 4M5Q A 1 204 UNP F0TRT1 F0TRT1_9INFA 1 204 SEQADV 4M5Q MET A -36 UNP F0TRT1 INITIATING METHIONINE SEQADV 4M5Q ALA A -35 UNP F0TRT1 EXPRESSION TAG SEQADV 4M5Q HIS A -34 UNP F0TRT1 EXPRESSION TAG SEQADV 4M5Q HIS A -33 UNP F0TRT1 EXPRESSION TAG SEQADV 4M5Q HIS A -32 UNP F0TRT1 EXPRESSION TAG SEQADV 4M5Q HIS A -31 UNP F0TRT1 EXPRESSION TAG SEQADV 4M5Q HIS A -30 UNP F0TRT1 EXPRESSION TAG SEQADV 4M5Q HIS A -29 UNP F0TRT1 EXPRESSION TAG SEQADV 4M5Q SER A -28 UNP F0TRT1 EXPRESSION TAG SEQADV 4M5Q ARG A -27 UNP F0TRT1 EXPRESSION TAG SEQADV 4M5Q ALA A -26 UNP F0TRT1 EXPRESSION TAG SEQADV 4M5Q TRP A -25 UNP F0TRT1 EXPRESSION TAG SEQADV 4M5Q ARG A -24 UNP F0TRT1 EXPRESSION TAG SEQADV 4M5Q HIS A -23 UNP F0TRT1 EXPRESSION TAG SEQADV 4M5Q PRO A -22 UNP F0TRT1 EXPRESSION TAG SEQADV 4M5Q GLN A -21 UNP F0TRT1 EXPRESSION TAG SEQADV 4M5Q PHE A -20 UNP F0TRT1 EXPRESSION TAG SEQADV 4M5Q GLY A -19 UNP F0TRT1 EXPRESSION TAG SEQADV 4M5Q GLY A -18 UNP F0TRT1 EXPRESSION TAG SEQADV 4M5Q HIS A -17 UNP F0TRT1 EXPRESSION TAG SEQADV 4M5Q HIS A -16 UNP F0TRT1 EXPRESSION TAG SEQADV 4M5Q HIS A -15 UNP F0TRT1 EXPRESSION TAG SEQADV 4M5Q HIS A -14 UNP F0TRT1 EXPRESSION TAG SEQADV 4M5Q HIS A -13 UNP F0TRT1 EXPRESSION TAG SEQADV 4M5Q HIS A -12 UNP F0TRT1 EXPRESSION TAG SEQADV 4M5Q ALA A -11 UNP F0TRT1 EXPRESSION TAG SEQADV 4M5Q LEU A -10 UNP F0TRT1 EXPRESSION TAG SEQADV 4M5Q GLU A -9 UNP F0TRT1 EXPRESSION TAG SEQADV 4M5Q VAL A -8 UNP F0TRT1 EXPRESSION TAG SEQADV 4M5Q LEU A -7 UNP F0TRT1 EXPRESSION TAG SEQADV 4M5Q PHE A -6 UNP F0TRT1 EXPRESSION TAG SEQADV 4M5Q GLN A -5 UNP F0TRT1 EXPRESSION TAG SEQADV 4M5Q GLY A -4 UNP F0TRT1 EXPRESSION TAG SEQADV 4M5Q PRO A -3 UNP F0TRT1 EXPRESSION TAG SEQADV 4M5Q LEU A -2 UNP F0TRT1 EXPRESSION TAG SEQADV 4M5Q GLY A -1 UNP F0TRT1 EXPRESSION TAG SEQADV 4M5Q SER A 0 UNP F0TRT1 EXPRESSION TAG SEQADV 4M5Q VAL A 201 UNP F0TRT1 ILE 201 CONFLICT SEQRES 1 A 241 MET ALA HIS HIS HIS HIS HIS HIS SER ARG ALA TRP ARG SEQRES 2 A 241 HIS PRO GLN PHE GLY GLY HIS HIS HIS HIS HIS HIS ALA SEQRES 3 A 241 LEU GLU VAL LEU PHE GLN GLY PRO LEU GLY SER MET GLU SEQRES 4 A 241 ASP PHE VAL ARG GLN CYS PHE ASN PRO MET ILE VAL GLU SEQRES 5 A 241 LEU ALA GLU LYS ALA MET LYS GLU TYR GLY GLU ASP PRO SEQRES 6 A 241 LYS ILE GLU THR ASN LYS PHE ALA ALA ILE CYS THR HIS SEQRES 7 A 241 LEU GLU VAL CYS PHE MET TYR SER ASP PHE HIS PHE ILE SEQRES 8 A 241 ASP GLU ARG GLY GLU SER ILE ILE VAL GLU SER GLY ASP SEQRES 9 A 241 PRO ASN ALA LEU LEU LYS HIS ARG PHE GLU ILE ILE GLU SEQRES 10 A 241 GLY ARG ASP ARG ILE MET ALA TRP THR VAL VAL ASN SER SEQRES 11 A 241 ILE CYS ASN THR THR GLY VAL GLU LYS PRO LYS PHE LEU SEQRES 12 A 241 PRO ASP LEU TYR ASP TYR LYS GLU ASN ARG PHE ILE GLU SEQRES 13 A 241 ILE GLY VAL THR ARG ARG GLU VAL HIS ILE TYR TYR LEU SEQRES 14 A 241 GLU LYS ALA ASN LYS ILE LYS SER GLU LYS THR HIS ILE SEQRES 15 A 241 HIS ILE PHE SER PHE THR GLY GLU GLU MET ALA THR LYS SEQRES 16 A 241 ALA ASP TYR THR LEU ASP GLU GLU SER ARG ALA ARG ILE SEQRES 17 A 241 LYS THR ARG LEU PHE THR ILE ARG GLN GLU MET ALA SER SEQRES 18 A 241 ARG SER LEU TRP ASP SER PHE ARG GLN SER GLU ARG GLY SEQRES 19 A 241 GLU GLU THR VAL GLU GLU ARG HET MN A 301 1 HET MN A 302 1 HET MN A 303 1 HET EDO A 304 10 HETNAM MN MANGANESE (II) ION HETNAM EDO 1,2-ETHANEDIOL HETSYN EDO ETHYLENE GLYCOL FORMUL 2 MN 3(MN 2+) FORMUL 5 EDO C2 H6 O2 FORMUL 6 HOH *225(H2 O) HELIX 1 1 SER A 0 PHE A 9 1 10 HELIX 2 2 ASN A 10 TYR A 24 1 15 HELIX 3 3 GLU A 31 ASP A 50 1 20 HELIX 4 4 ASP A 83 GLY A 99 1 17 HELIX 5 5 GLU A 126 LYS A 139 1 14 HELIX 6 6 LYS A 158 ASP A 160 5 3 HELIX 7 7 ASP A 164 ARG A 185 1 22 HELIX 8 8 LEU A 187 GLU A 195 1 9 SHEET 1 A 3 SER A 60 ILE A 62 0 SHEET 2 A 3 HIS A 52 ILE A 54 -1 N PHE A 53 O ILE A 61 SHEET 3 A 3 LYS A 73 HIS A 74 -1 O LYS A 73 N ILE A 54 SHEET 1 B 5 PHE A 76 ILE A 78 0 SHEET 2 B 5 LEU A 109 ASP A 111 -1 O TYR A 110 N GLU A 77 SHEET 3 B 5 ARG A 116 THR A 123 -1 O ARG A 116 N ASP A 111 SHEET 4 B 5 HIS A 144 SER A 149 1 O HIS A 144 N GLU A 119 SHEET 5 B 5 GLU A 154 ALA A 156 -1 O MET A 155 N ILE A 147 LINK NE2 HIS A 41 MN MN A 301 1555 1555 2.23 LINK NE2 HIS A 74 MN MN A 303 1555 1555 2.19 LINK OE1 GLU A 80 MN MN A 302 1555 1555 2.10 LINK OD2 ASP A 108 MN MN A 301 1555 1555 2.16 LINK OD1 ASP A 108 MN MN A 302 1555 1555 2.11 LINK OE2 GLU A 119 MN MN A 301 1555 1555 2.12 LINK O ILE A 120 MN MN A 301 1555 1555 2.19 LINK MN MN A 301 O HOH A 409 1555 1555 2.25 LINK MN MN A 301 O HOH A 435 1555 1555 2.33 LINK MN MN A 302 O HOH A 428 1555 1555 2.16 LINK MN MN A 302 O HOH A 435 1555 1555 2.16 LINK MN MN A 302 O HOH A 509 1555 1555 2.18 LINK MN MN A 302 O HOH A 521 1555 1555 2.19 LINK MN MN A 303 O HOH A 473 1555 1555 2.26 SITE 1 AC1 6 HIS A 41 ASP A 108 GLU A 119 ILE A 120 SITE 2 AC1 6 HOH A 409 HOH A 435 SITE 1 AC2 6 GLU A 80 ASP A 108 HOH A 428 HOH A 435 SITE 2 AC2 6 HOH A 509 HOH A 521 SITE 1 AC3 2 HIS A 74 HOH A 473 SITE 1 AC4 6 ASN A 33 LYS A 34 ARG A 124 SER A 194 SITE 2 AC4 6 ARG A 196 HOH A 544 CRYST1 88.400 101.490 66.000 90.00 90.00 90.00 C 2 2 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011312 0.000000 0.000000 0.00000 SCALE2 0.000000 0.009853 0.000000 0.00000 SCALE3 0.000000 0.000000 0.015152 0.00000