HEADER HYDROLASE 08-AUG-13 4M5W TITLE CRYSTAL STRUCTURE OF THE USP7/HAUSP CATALYTIC DOMAIN COMPND MOL_ID: 1; COMPND 2 MOLECULE: UBIQUITIN CARBOXYL-TERMINAL HYDROLASE 7; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: CATALYTIC DOMAIN (UNP RESIDUES 207-560); COMPND 5 SYNONYM: USP7, HAUSP, DEUBIQUITINATING ENZYME 7, HERPESVIRUS- COMPND 6 ASSOCIATED UBIQUITIN-SPECIFIC PROTEASE, UBIQUITIN THIOESTERASE 7, COMPND 7 UBIQUITIN-SPECIFIC-PROCESSING PROTEASE 7; COMPND 8 EC: 3.4.19.12; COMPND 9 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: USP7, HAUSP; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS UBIQUITIN-SPECIFIC CYSTEINE PROTEASE, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR K.L.MOLLAND,A.D.MESECAR,Q.ZHOU REVDAT 3 20-SEP-23 4M5W 1 REMARK SEQADV REVDAT 2 24-SEP-14 4M5W 1 JRNL REVDAT 1 12-MAR-14 4M5W 0 JRNL AUTH K.MOLLAND,Q.ZHOU,A.D.MESECAR JRNL TITL A 2.2 ANGSTROM RESOLUTION STRUCTURE OF THE USP7 CATALYTIC JRNL TITL 2 DOMAIN IN A NEW SPACE GROUP ELABORATES UPON STRUCTURAL JRNL TITL 3 REARRANGEMENTS RESULTING FROM UBIQUITIN BINDING. JRNL REF ACTA CRYSTALLOGR F STRUCT V. 70 283 2014 JRNL REF 2 BIOL COMMUN JRNL REFN ESSN 1744-3091 JRNL PMID 24598911 JRNL DOI 10.1107/S2053230X14002519 REMARK 2 REMARK 2 RESOLUTION. 2.24 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE: 1.8.1_1168) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.24 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 38.44 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.360 REMARK 3 COMPLETENESS FOR RANGE (%) : 91.5 REMARK 3 NUMBER OF REFLECTIONS : 17493 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.188 REMARK 3 R VALUE (WORKING SET) : 0.186 REMARK 3 FREE R VALUE : 0.242 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.140 REMARK 3 FREE R VALUE TEST SET COUNT : 899 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 38.4467 - 4.0768 0.99 3059 162 0.1618 0.1927 REMARK 3 2 4.0768 - 3.2364 1.00 3028 163 0.1678 0.2258 REMARK 3 3 3.2364 - 2.8274 1.00 3005 170 0.1999 0.2927 REMARK 3 4 2.8274 - 2.5690 0.99 2951 152 0.2296 0.3341 REMARK 3 5 2.5690 - 2.3849 0.85 2562 144 0.2561 0.3049 REMARK 3 6 2.3849 - 2.2440 0.66 1989 108 0.2655 0.3477 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.300 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 31.190 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.007 2847 REMARK 3 ANGLE : 1.110 3839 REMARK 3 CHIRALITY : 0.075 409 REMARK 3 PLANARITY : 0.004 503 REMARK 3 DIHEDRAL : 15.776 1081 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 208 THROUGH 325 ) REMARK 3 ORIGIN FOR THE GROUP (A): 65.6602 33.9816 69.8265 REMARK 3 T TENSOR REMARK 3 T11: 0.3606 T22: 0.7356 REMARK 3 T33: 0.2543 T12: 0.1915 REMARK 3 T13: 0.0224 T23: 0.1025 REMARK 3 L TENSOR REMARK 3 L11: 3.2359 L22: 2.3159 REMARK 3 L33: 4.1471 L12: -0.9363 REMARK 3 L13: 0.8366 L23: 0.1068 REMARK 3 S TENSOR REMARK 3 S11: -0.2639 S12: -0.7303 S13: -0.4231 REMARK 3 S21: -0.0994 S22: 0.2226 S23: 0.0107 REMARK 3 S31: 0.4564 S32: 0.7021 S33: -0.0394 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 326 THROUGH 397 ) REMARK 3 ORIGIN FOR THE GROUP (A): 44.4646 40.9341 95.2029 REMARK 3 T TENSOR REMARK 3 T11: 0.3911 T22: 0.6458 REMARK 3 T33: 0.4204 T12: 0.1354 REMARK 3 T13: 0.0779 T23: 0.0513 REMARK 3 L TENSOR REMARK 3 L11: 1.6812 L22: 4.0141 REMARK 3 L33: 5.4238 L12: 2.2548 REMARK 3 L13: -2.2068 L23: -3.1348 REMARK 3 S TENSOR REMARK 3 S11: 0.0941 S12: -0.1569 S13: 0.0412 REMARK 3 S21: 0.6767 S22: 0.2875 S23: 0.6731 REMARK 3 S31: -0.0149 S32: -0.0034 S33: -0.2876 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 398 THROUGH 436 ) REMARK 3 ORIGIN FOR THE GROUP (A): 50.3370 48.9811 79.4345 REMARK 3 T TENSOR REMARK 3 T11: 0.2085 T22: 0.5197 REMARK 3 T33: 0.2996 T12: 0.0450 REMARK 3 T13: 0.0302 T23: -0.0114 REMARK 3 L TENSOR REMARK 3 L11: 1.6591 L22: 4.3942 REMARK 3 L33: 6.2039 L12: -1.3981 REMARK 3 L13: 0.1042 L23: -0.8424 REMARK 3 S TENSOR REMARK 3 S11: 0.2428 S12: -0.6299 S13: 0.1357 REMARK 3 S21: -0.0693 S22: -0.0686 S23: 0.5317 REMARK 3 S31: -0.0081 S32: -0.3225 S33: -0.1712 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 437 THROUGH 554 ) REMARK 3 ORIGIN FOR THE GROUP (A): 65.8153 46.7862 72.7771 REMARK 3 T TENSOR REMARK 3 T11: 0.1812 T22: 0.9514 REMARK 3 T33: 0.2493 T12: 0.0463 REMARK 3 T13: -0.0754 T23: -0.0449 REMARK 3 L TENSOR REMARK 3 L11: 2.0970 L22: 3.7261 REMARK 3 L33: 2.4636 L12: -0.2750 REMARK 3 L13: -2.5567 L23: 0.9144 REMARK 3 S TENSOR REMARK 3 S11: 0.1459 S12: -0.5031 S13: 0.2135 REMARK 3 S21: -0.3071 S22: 0.1374 S23: -0.2704 REMARK 3 S31: -0.2139 S32: 1.1686 S33: -0.0626 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4M5W COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 16-AUG-13. REMARK 100 THE DEPOSITION ID IS D_1000081505. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 12-DEC-11 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 21-ID-G REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.976 REMARK 200 MONOCHROMATOR : DIAMOND(111) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 300 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 17493 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.244 REMARK 200 RESOLUTION RANGE LOW (A) : 56.904 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 92.6 REMARK 200 DATA REDUNDANCY : 3.500 REMARK 200 R MERGE (I) : 0.07700 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 19.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.24 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.29 REMARK 200 COMPLETENESS FOR SHELL (%) : 66.4 REMARK 200 DATA REDUNDANCY IN SHELL : 2.80 REMARK 200 R MERGE FOR SHELL (I) : 0.54900 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.100 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHENIX 1.8.1_1168 REMARK 200 STARTING MODEL: PDB ENTRY 1NB8 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 49.75 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.45 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M HEPES, PH 7.5, 22% PEG3350, 0.2 REMARK 280 M SODIUM BROMIDE, 0.15 MM CYMAL-7, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 285K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 51.15600 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 34.59650 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 51.15600 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 34.59650 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 725 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 206 REMARK 465 SER A 207 REMARK 465 LEU A 505 REMARK 465 SER A 506 REMARK 465 VAL A 507 REMARK 465 ARG A 508 REMARK 465 ARG A 555 REMARK 465 LYS A 556 REMARK 465 GLU A 557 REMARK 465 ARG A 558 REMARK 465 GLN A 559 REMARK 465 GLU A 560 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 OE2 GLU A 383 O HOH A 789 4748 2.14 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS A 209 -121.95 49.84 REMARK 500 HIS A 210 -3.66 -147.78 REMARK 500 CYS A 223 -113.25 54.98 REMARK 500 PRO A 246 68.12 -67.33 REMARK 500 TRP A 285 77.69 -100.74 REMARK 500 CYS A 315 -8.08 -58.13 REMARK 500 ASP A 412 76.38 14.03 REMARK 500 PRO A 413 64.79 -66.81 REMARK 500 GLN A 414 -44.57 61.87 REMARK 500 ASP A 416 44.45 -159.56 REMARK 500 ASP A 459 -168.26 -118.83 REMARK 500 ASN A 470 79.90 -118.14 REMARK 500 ASP A 482 -110.74 53.36 REMARK 500 ILE A 494 -83.41 -116.12 REMARK 500 HIS A 501 70.91 -150.25 REMARK 500 ASP A 503 -72.71 -60.62 REMARK 500 LEU A 528 34.58 -92.71 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 TYR A 411 ASP A 412 141.12 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE BR A 601 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE BR A 602 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE BR A 603 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE BR A 604 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4M5X RELATED DB: PDB DBREF 4M5W A 207 560 UNP Q93009 UBP7_HUMAN 207 560 SEQADV 4M5W GLY A 206 UNP Q93009 EXPRESSION TAG SEQRES 1 A 355 GLY SER LYS LYS HIS THR GLY TYR VAL GLY LEU LYS ASN SEQRES 2 A 355 GLN GLY ALA THR CYS TYR MET ASN SER LEU LEU GLN THR SEQRES 3 A 355 LEU PHE PHE THR ASN GLN LEU ARG LYS ALA VAL TYR MET SEQRES 4 A 355 MET PRO THR GLU GLY ASP ASP SER SER LYS SER VAL PRO SEQRES 5 A 355 LEU ALA LEU GLN ARG VAL PHE TYR GLU LEU GLN HIS SER SEQRES 6 A 355 ASP LYS PRO VAL GLY THR LYS LYS LEU THR LYS SER PHE SEQRES 7 A 355 GLY TRP GLU THR LEU ASP SER PHE MET GLN HIS ASP VAL SEQRES 8 A 355 GLN GLU LEU CYS ARG VAL LEU LEU ASP ASN VAL GLU ASN SEQRES 9 A 355 LYS MET LYS GLY THR CYS VAL GLU GLY THR ILE PRO LYS SEQRES 10 A 355 LEU PHE ARG GLY LYS MET VAL SER TYR ILE GLN CYS LYS SEQRES 11 A 355 GLU VAL ASP TYR ARG SER ASP ARG ARG GLU ASP TYR TYR SEQRES 12 A 355 ASP ILE GLN LEU SER ILE LYS GLY LYS LYS ASN ILE PHE SEQRES 13 A 355 GLU SER PHE VAL ASP TYR VAL ALA VAL GLU GLN LEU ASP SEQRES 14 A 355 GLY ASP ASN LYS TYR ASP ALA GLY GLU HIS GLY LEU GLN SEQRES 15 A 355 GLU ALA GLU LYS GLY VAL LYS PHE LEU THR LEU PRO PRO SEQRES 16 A 355 VAL LEU HIS LEU GLN LEU MET ARG PHE MET TYR ASP PRO SEQRES 17 A 355 GLN THR ASP GLN ASN ILE LYS ILE ASN ASP ARG PHE GLU SEQRES 18 A 355 PHE PRO GLU GLN LEU PRO LEU ASP GLU PHE LEU GLN LYS SEQRES 19 A 355 THR ASP PRO LYS ASP PRO ALA ASN TYR ILE LEU HIS ALA SEQRES 20 A 355 VAL LEU VAL HIS SER GLY ASP ASN HIS GLY GLY HIS TYR SEQRES 21 A 355 VAL VAL TYR LEU ASN PRO LYS GLY ASP GLY LYS TRP CYS SEQRES 22 A 355 LYS PHE ASP ASP ASP VAL VAL SER ARG CYS THR LYS GLU SEQRES 23 A 355 GLU ALA ILE GLU HIS ASN TYR GLY GLY HIS ASP ASP ASP SEQRES 24 A 355 LEU SER VAL ARG HIS CYS THR ASN ALA TYR MET LEU VAL SEQRES 25 A 355 TYR ILE ARG GLU SER LYS LEU SER GLU VAL LEU GLN ALA SEQRES 26 A 355 VAL THR ASP HIS ASP ILE PRO GLN GLN LEU VAL GLU ARG SEQRES 27 A 355 LEU GLN GLU GLU LYS ARG ILE GLU ALA GLN LYS ARG LYS SEQRES 28 A 355 GLU ARG GLN GLU HET BR A 601 1 HET BR A 602 1 HET BR A 603 1 HET BR A 604 1 HETNAM BR BROMIDE ION FORMUL 2 BR 4(BR 1-) FORMUL 6 HOH *89(H2 O) HELIX 1 1 TYR A 224 PHE A 234 1 11 HELIX 2 2 THR A 235 TYR A 243 1 9 HELIX 3 3 SER A 255 SER A 270 1 16 HELIX 4 4 THR A 276 PHE A 283 1 8 HELIX 5 5 ASP A 295 LYS A 312 1 18 HELIX 6 6 GLY A 318 ARG A 325 1 8 HELIX 7 7 ASN A 359 VAL A 368 1 10 HELIX 8 8 GLY A 382 HIS A 384 5 3 HELIX 9 9 ASP A 434 LEU A 437 5 4 HELIX 10 10 THR A 489 ILE A 494 1 6 HELIX 11 11 GLU A 495 TYR A 498 5 4 HELIX 12 12 LYS A 523 LEU A 528 1 6 HELIX 13 13 THR A 532 ILE A 536 5 5 HELIX 14 14 PRO A 537 GLN A 553 1 17 SHEET 1 A 4 ARG A 340 TYR A 347 0 SHEET 2 A 4 GLY A 326 CYS A 334 -1 N MET A 328 O GLU A 345 SHEET 3 A 4 ALA A 389 THR A 397 -1 O GLU A 390 N GLN A 333 SHEET 4 A 4 GLU A 371 LEU A 373 -1 N LEU A 373 O ALA A 389 SHEET 1 B 5 ILE A 350 LEU A 352 0 SHEET 2 B 5 VAL A 401 LEU A 406 1 O GLN A 405 N LEU A 352 SHEET 3 B 5 THR A 511 ARG A 520 -1 O LEU A 516 N LEU A 404 SHEET 4 B 5 ASN A 447 GLY A 458 -1 N LEU A 454 O MET A 515 SHEET 5 B 5 GLN A 430 PRO A 432 -1 N LEU A 431 O TYR A 448 SHEET 1 C 7 ILE A 350 LEU A 352 0 SHEET 2 C 7 VAL A 401 LEU A 406 1 O GLN A 405 N LEU A 352 SHEET 3 C 7 THR A 511 ARG A 520 -1 O LEU A 516 N LEU A 404 SHEET 4 C 7 ASN A 447 GLY A 458 -1 N LEU A 454 O MET A 515 SHEET 5 C 7 GLY A 463 LEU A 469 -1 O VAL A 466 N VAL A 455 SHEET 6 C 7 CYS A 478 ASP A 481 -1 O CYS A 478 N LEU A 469 SHEET 7 C 7 VAL A 484 ARG A 487 -1 O SER A 486 N LYS A 479 SHEET 1 D 2 TYR A 379 ASP A 380 0 SHEET 2 D 2 LEU A 386 GLN A 387 -1 O GLN A 387 N TYR A 379 SHEET 1 E 2 PHE A 409 MET A 410 0 SHEET 2 E 2 ILE A 419 LYS A 420 -1 O ILE A 419 N MET A 410 CISPEP 1 GLY A 375 ASP A 376 0 11.78 CISPEP 2 THR A 415 ASP A 416 0 -12.79 SITE 1 AC1 3 GLN A 219 GLY A 275 LYS A 277 SITE 1 AC2 1 SER A 290 SITE 1 AC3 3 LEU A 406 HOH A 704 HOH A 705 SITE 1 AC4 2 ARG A 424 HOH A 780 CRYST1 102.312 69.193 75.726 90.00 131.28 90.00 C 1 2 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009774 0.000000 0.008582 0.00000 SCALE2 0.000000 0.014452 0.000000 0.00000 SCALE3 0.000000 0.000000 0.017573 0.00000