HEADER TRANSFERASE/SIGNALING PROTEIN 09-AUG-13 4M69 TITLE CRYSTAL STRUCTURE OF THE MOUSE RIP3-MLKL COMPLEX COMPND MOL_ID: 1; COMPND 2 MOLECULE: RECEPTOR-INTERACTING SERINE/THREONINE-PROTEIN KINASE 3; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: UNP RESIDUES 1-313; COMPND 5 SYNONYM: RIP-LIKE PROTEIN KINASE 3, RECEPTOR-INTERACTING PROTEIN 3, COMPND 6 RIP-3, MRIP3; COMPND 7 EC: 2.7.11.1; COMPND 8 ENGINEERED: YES; COMPND 9 MOL_ID: 2; COMPND 10 MOLECULE: MIXED LINEAGE KINASE DOMAIN-LIKE PROTEIN; COMPND 11 CHAIN: B; COMPND 12 FRAGMENT: UNP RESIDUES 182-464; COMPND 13 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 3 ORGANISM_COMMON: MOUSE; SOURCE 4 ORGANISM_TAXID: 10090; SOURCE 5 GENE: RIPK3; SOURCE 6 EXPRESSION_SYSTEM: SPODOPTERA FRUGIPERDA; SOURCE 7 EXPRESSION_SYSTEM_COMMON: FALL ARMYWORM; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 7108; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: BACULOVIRUS; SOURCE 10 MOL_ID: 2; SOURCE 11 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 12 ORGANISM_COMMON: MOUSE; SOURCE 13 ORGANISM_TAXID: 10090; SOURCE 14 GENE: MLKL; SOURCE 15 EXPRESSION_SYSTEM: SPODOPTERA FRUGIPERDA; SOURCE 16 EXPRESSION_SYSTEM_COMMON: FALL ARMYWORM; SOURCE 17 EXPRESSION_SYSTEM_TAXID: 7108; SOURCE 18 EXPRESSION_SYSTEM_VECTOR_TYPE: BACULOVIRUS KEYWDS KINASE, PHOSPHORYLATION, TRANSFERASE-SIGNALING PROTEIN COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR T.XIE,W.PENG,C.YAN,J.WU,Y.SHI REVDAT 4 30-OCT-24 4M69 1 REMARK REVDAT 3 08-NOV-23 4M69 1 REMARK LINK REVDAT 2 06-NOV-13 4M69 1 JRNL REVDAT 1 16-OCT-13 4M69 0 JRNL AUTH T.XIE,W.PENG,C.YAN,J.WU,X.GONG,Y.SHI JRNL TITL STRUCTURAL INSIGHTS INTO RIP3-MEDIATED NECROPTOTIC SIGNALING JRNL REF CELL REP V. 5 70 2013 JRNL REFN ESSN 2211-1247 JRNL PMID 24095729 JRNL DOI 10.1016/J.CELREP.2013.08.044 REMARK 2 REMARK 2 RESOLUTION. 2.50 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE: 1.7.3_928) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.50 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 39.57 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 3 NUMBER OF REFLECTIONS : 28464 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.222 REMARK 3 R VALUE (WORKING SET) : 0.220 REMARK 3 FREE R VALUE : 0.246 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.060 REMARK 3 FREE R VALUE TEST SET COUNT : 1439 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 39.5741 - 5.3747 1.00 2857 136 0.2071 0.2376 REMARK 3 2 5.3747 - 4.2677 1.00 2750 136 0.1753 0.1970 REMARK 3 3 4.2677 - 3.7287 1.00 2731 142 0.1903 0.1952 REMARK 3 4 3.7287 - 3.3880 1.00 2688 159 0.2172 0.2530 REMARK 3 5 3.3880 - 3.1452 1.00 2668 158 0.2375 0.2621 REMARK 3 6 3.1452 - 2.9599 1.00 2668 143 0.2547 0.2648 REMARK 3 7 2.9599 - 2.8117 1.00 2696 154 0.2657 0.3019 REMARK 3 8 2.8117 - 2.6893 1.00 2643 148 0.2828 0.3244 REMARK 3 9 2.6893 - 2.5858 1.00 2716 123 0.2906 0.3284 REMARK 3 10 2.5858 - 2.4966 0.98 2608 140 0.2989 0.3607 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : 0.32 REMARK 3 B_SOL : 44.68 REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.340 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 25.650 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 44.15 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 51.78 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 7.36090 REMARK 3 B22 (A**2) : 3.08570 REMARK 3 B33 (A**2) : -7.29440 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.010 4538 REMARK 3 ANGLE : 1.416 6156 REMARK 3 CHIRALITY : 0.071 685 REMARK 3 PLANARITY : 0.018 780 REMARK 3 DIHEDRAL : 18.562 1722 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: ALL REMARK 3 ORIGIN FOR THE GROUP (A): -10.1968 -40.7329 2.0798 REMARK 3 T TENSOR REMARK 3 T11: 0.2611 T22: 0.2773 REMARK 3 T33: 0.2541 T12: 0.0034 REMARK 3 T13: 0.0172 T23: 0.0274 REMARK 3 L TENSOR REMARK 3 L11: 0.9818 L22: 1.6509 REMARK 3 L33: 0.7004 L12: 0.7109 REMARK 3 L13: 0.4379 L23: 0.4021 REMARK 3 S TENSOR REMARK 3 S11: -0.1017 S12: 0.0864 S13: 0.1622 REMARK 3 S21: -0.0811 S22: -0.0086 S23: 0.0291 REMARK 3 S31: -0.0869 S32: 0.0877 S33: 0.1090 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4M69 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 22-AUG-13. REMARK 100 THE DEPOSITION ID IS D_1000081518. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 30-APR-13 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRF REMARK 200 BEAMLINE : BL17U REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9792 REMARK 200 MONOCHROMATOR : SI 111 CHANNEL REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 28489 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.497 REMARK 200 RESOLUTION RANGE LOW (A) : 40.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 1.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.50 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.59 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 4M66 AND 4M68 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 59.20 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.01 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1M HEPES, 0.35M (NH4)2S04, 17% REMARK 280 PEG4000, PH 7.0, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 2 2 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -X,Y,-Z+1/2 REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 53.56450 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 53.56450 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 53.22150 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 70.97550 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 53.22150 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 70.97550 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 53.56450 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 53.22150 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 70.97550 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 53.56450 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 53.22150 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 70.97550 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3960 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 25000 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -63.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 SER A 2 REMARK 465 SER A 3 REMARK 465 VAL A 4 REMARK 465 LYS A 5 REMARK 465 LEU A 6 REMARK 465 TRP A 7 REMARK 465 PRO A 8 REMARK 465 THR A 9 REMARK 465 GLY A 10 REMARK 465 ALA A 11 REMARK 465 GLY A 169 REMARK 465 GLY A 170 REMARK 465 SER A 171 REMARK 465 GLN A 172 REMARK 465 SER A 173 REMARK 465 GLY A 174 REMARK 465 SER A 175 REMARK 465 GLY A 176 REMARK 465 SER A 177 REMARK 465 GLY A 178 REMARK 465 SER A 179 REMARK 465 GLY A 180 REMARK 465 SER A 181 REMARK 465 ARG A 182 REMARK 465 HIS A 313 REMARK 465 SER B 345 REMARK 465 ILE B 346 REMARK 465 SER B 347 REMARK 465 ARG B 348 REMARK 465 THR B 349 REMARK 465 ALA B 350 REMARK 465 LYS B 351 REMARK 465 SER B 352 REMARK 465 THR B 353 REMARK 465 LYS B 354 REMARK 465 ALA B 355 REMARK 465 GLU B 356 REMARK 465 ARG B 357 REMARK 465 SER B 459 REMARK 465 THR B 460 REMARK 465 ASP B 461 REMARK 465 LYS B 462 REMARK 465 LYS B 463 REMARK 465 VAL B 464 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 SEP A 232 O - C - N ANGL. DEV. = -28.8 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PHE A 33 -33.91 -131.97 REMARK 500 LYS A 56 -17.72 76.81 REMARK 500 ARG A 69 118.00 -169.14 REMARK 500 GLU A 81 -169.96 -76.87 REMARK 500 ASP A 86 52.42 39.05 REMARK 500 LEU A 107 40.43 -88.57 REMARK 500 HIS A 141 -72.10 -64.86 REMARK 500 ARG A 142 0.02 85.35 REMARK 500 ASP A 143 33.64 -150.86 REMARK 500 LEU A 155 15.82 85.02 REMARK 500 ASP A 229 82.86 -65.70 REMARK 500 LYS A 230 91.04 -168.96 REMARK 500 THR A 237 -59.71 -124.72 REMARK 500 CYS A 239 -74.14 -83.52 REMARK 500 THR A 257 55.83 -119.67 REMARK 500 ASP A 297 77.50 -66.82 REMARK 500 LYS A 298 8.38 165.92 REMARK 500 ILE B 183 -146.61 -65.43 REMARK 500 LYS B 184 101.17 -163.88 REMARK 500 CYS B 275 79.51 -118.35 REMARK 500 ARG B 317 -5.40 83.78 REMARK 500 ASN B 318 56.96 -149.83 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: MAIN CHAIN PLANARITY REMARK 500 REMARK 500 THE FOLLOWING RESIDUES HAVE A PSEUDO PLANARITY REMARK 500 TORSION ANGLE, C(I) - CA(I) - N(I+1) - O(I), GREATER REMARK 500 10.0 DEGREES. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 500 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 500 I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI ANGLE REMARK 500 TPO A 231 -21.07 REMARK 500 SEP A 232 -36.73 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 403 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASN A 148 OD1 REMARK 620 2 ASP A 161 OD2 80.8 REMARK 620 3 ANP A 401 O1A 168.0 89.9 REMARK 620 4 ANP A 401 O1B 100.3 164.0 86.6 REMARK 620 5 ANP A 401 O2G 89.2 84.3 82.3 79.7 REMARK 620 6 HOH A 593 O 78.5 86.2 108.5 109.7 165.6 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ANP A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 403 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL A 404 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL A 405 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 B 501 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4M66 RELATED DB: PDB REMARK 900 RELATED ID: 4M68 RELATED DB: PDB REMARK 999 REMARK 999 SEQUENCE REMARK 999 THE SEQUENCE OF CHAIN B IS ISOFORM 2 OF Q9D2Y4 (MLKL_MOUSE). DBREF 4M69 A 1 313 UNP Q9QZL0 RIPK3_MOUSE 1 313 DBREF 4M69 B 182 464 UNP Q9D2Y4 MLKL_MOUSE 182 464 SEQRES 1 A 313 MET SER SER VAL LYS LEU TRP PRO THR GLY ALA SER ALA SEQRES 2 A 313 VAL PRO LEU VAL SER ARG GLU GLU LEU LYS LYS LEU GLU SEQRES 3 A 313 PHE VAL GLY LYS GLY GLY PHE GLY VAL VAL PHE ARG ALA SEQRES 4 A 313 HIS HIS ARG THR TRP ASN HIS ASP VAL ALA VAL LYS ILE SEQRES 5 A 313 VAL ASN SER LYS LYS ILE SER TRP GLU VAL LYS ALA MET SEQRES 6 A 313 VAL ASN LEU ARG ASN GLU ASN VAL LEU LEU LEU LEU GLY SEQRES 7 A 313 VAL THR GLU ASP LEU GLN TRP ASP PHE VAL SER GLY GLN SEQRES 8 A 313 ALA LEU VAL THR ARG PHE MET GLU ASN GLY SER LEU ALA SEQRES 9 A 313 GLY LEU LEU GLN PRO GLU CYS PRO ARG PRO TRP PRO LEU SEQRES 10 A 313 LEU CYS ARG LEU LEU GLN GLU VAL VAL LEU GLY MET CYS SEQRES 11 A 313 TYR LEU HIS SER LEU ASP PRO PRO LEU LEU HIS ARG ASP SEQRES 12 A 313 LEU LYS PRO SER ASN ILE LEU LEU ASP PRO GLU LEU HIS SEQRES 13 A 313 ALA LYS LEU ALA ASP PHE GLY LEU SER THR PHE GLN GLY SEQRES 14 A 313 GLY SER GLN SER GLY SER GLY SER GLY SER GLY SER ARG SEQRES 15 A 313 ASP SEP GLY GLY THR LEU ALA TYR LEU ASP PRO GLU LEU SEQRES 16 A 313 LEU PHE LYS VAL ASN LEU LYS ALA SER LYS ALA SER ASP SEQRES 17 A 313 VAL TYR SER PHE GLY ILE LEU VAL TRP ALA VAL LEU ALA SEQRES 18 A 313 GLY ARG GLU ALA GLU LEU VAL ASP LYS TPO SEP LEU ILE SEQRES 19 A 313 ARG GLU THR VAL CYS ASP ARG GLN SER ARG PRO PRO LEU SEQRES 20 A 313 THR GLU LEU PRO PRO GLY SER PRO GLU THR PRO GLY LEU SEQRES 21 A 313 GLU LYS LEU LYS GLU LEU MET ILE HIS CYS TRP GLY SER SEQRES 22 A 313 GLN SER GLU ASN ARG PRO SER PHE GLN ASP CYS GLU PRO SEQRES 23 A 313 LYS THR ASN GLU VAL TYR ASN LEU VAL LYS ASP LYS VAL SEQRES 24 A 313 ASP ALA ALA VAL SER GLU VAL LYS HIS TYR LEU SER GLN SEQRES 25 A 313 HIS SEQRES 1 B 283 GLN ILE LYS GLU ILE PRO LYS GLU HIS LEU GLY PRO PRO SEQRES 2 B 283 TRP THR LYS LEU LYS THR SER LYS MET SER THR ILE TYR SEQRES 3 B 283 ARG GLY GLU TYR HIS ARG SER PRO VAL THR ILE LYS VAL SEQRES 4 B 283 PHE ASN ASN PRO GLN ALA GLU SER VAL GLY ILE VAL ARG SEQRES 5 B 283 PHE THR PHE ASN ASP GLU ILE LYS THR MET LYS LYS PHE SEQRES 6 B 283 ASP SER PRO ASN ILE LEU ARG ILE PHE GLY ILE CYS ILE SEQRES 7 B 283 ASP GLN THR VAL LYS PRO PRO GLU PHE SER ILE VAL MET SEQRES 8 B 283 GLU TYR CYS GLU LEU GLY THR LEU ARG GLU LEU LEU ASP SEQRES 9 B 283 ARG GLU LYS ASP LEU THR MET SER VAL ARG SER LEU LEU SEQRES 10 B 283 VAL LEU ARG ALA ALA ARG GLY LEU TYR ARG LEU HIS HIS SEQRES 11 B 283 SER GLU THR LEU HIS ARG ASN ILE SER SER SER SER PHE SEQRES 12 B 283 LEU VAL ALA GLY GLY TYR GLN VAL LYS LEU ALA GLY PHE SEQRES 13 B 283 GLU LEU SER LYS THR GLN ASN SER ILE SER ARG THR ALA SEQRES 14 B 283 LYS SER THR LYS ALA GLU ARG SER SER SER THR ILE TYR SEQRES 15 B 283 VAL SER PRO GLU ARG LEU LYS ASN PRO PHE CYS LEU TYR SEQRES 16 B 283 ASP ILE LYS ALA GLU ILE TYR SER PHE GLY ILE VAL LEU SEQRES 17 B 283 TRP GLU ILE ALA THR GLY LYS ILE PRO PHE GLU GLY CYS SEQRES 18 B 283 ASP SER LYS LYS ILE ARG GLU LEU VAL ALA GLU ASP LYS SEQRES 19 B 283 LYS GLN GLU PRO VAL GLY GLN ASP CYS PRO GLU LEU LEU SEQRES 20 B 283 ARG GLU ILE ILE ASN GLU CYS ARG ALA HIS GLU PRO SER SEQRES 21 B 283 GLN ARG PRO SER VAL ASP GLY ILE LEU GLU ARG LEU SER SEQRES 22 B 283 ALA VAL GLU GLU SER THR ASP LYS LYS VAL MODRES 4M69 SEP A 184 SER PHOSPHOSERINE MODRES 4M69 TPO A 231 THR PHOSPHOTHREONINE MODRES 4M69 SEP A 232 SER PHOSPHOSERINE HET SEP A 184 10 HET TPO A 231 11 HET SEP A 232 10 HET ANP A 401 31 HET SO4 A 402 5 HET MG A 403 1 HET CL A 404 1 HET CL A 405 1 HET SO4 B 501 5 HETNAM SEP PHOSPHOSERINE HETNAM TPO PHOSPHOTHREONINE HETNAM ANP PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER HETNAM SO4 SULFATE ION HETNAM MG MAGNESIUM ION HETNAM CL CHLORIDE ION HETSYN SEP PHOSPHONOSERINE HETSYN TPO PHOSPHONOTHREONINE FORMUL 1 SEP 2(C3 H8 N O6 P) FORMUL 1 TPO C4 H10 N O6 P FORMUL 3 ANP C10 H17 N6 O12 P3 FORMUL 4 SO4 2(O4 S 2-) FORMUL 5 MG MG 2+ FORMUL 6 CL 2(CL 1-) FORMUL 9 HOH *167(H2 O) HELIX 1 1 SER A 18 GLU A 20 5 3 HELIX 2 2 SER A 59 ALA A 64 1 6 HELIX 3 3 MET A 65 LEU A 68 5 4 HELIX 4 4 SER A 102 LEU A 107 5 6 HELIX 5 5 PRO A 114 LEU A 135 1 22 HELIX 6 6 LYS A 145 SER A 147 5 3 HELIX 7 7 GLY A 163 GLN A 168 1 6 HELIX 8 8 SEP A 184 ALA A 189 1 6 HELIX 9 9 ASP A 192 LYS A 198 1 7 HELIX 10 10 SER A 204 GLY A 222 1 19 HELIX 11 11 LYS A 230 VAL A 238 1 9 HELIX 12 12 PRO A 246 LEU A 250 5 5 HELIX 13 13 GLY A 259 TRP A 271 1 13 HELIX 14 14 GLN A 274 ARG A 278 5 5 HELIX 15 15 SER A 280 VAL A 295 1 16 HELIX 16 16 LYS A 298 SER A 311 1 14 HELIX 17 17 PRO B 187 LEU B 191 5 5 HELIX 18 18 SER B 228 PHE B 246 1 19 HELIX 19 19 THR B 279 GLU B 287 1 9 HELIX 20 20 THR B 291 SER B 312 1 22 HELIX 21 21 GLY B 336 THR B 342 1 7 HELIX 22 22 SER B 359 VAL B 364 5 6 HELIX 23 23 SER B 365 ASN B 371 1 7 HELIX 24 24 ASP B 377 GLY B 395 1 19 HELIX 25 25 ASP B 403 GLU B 413 1 11 HELIX 26 26 PRO B 425 ARG B 436 1 12 HELIX 27 27 GLU B 439 ARG B 443 5 5 HELIX 28 28 SER B 445 VAL B 456 1 12 SHEET 1 A 5 LEU A 22 LYS A 30 0 SHEET 2 A 5 GLY A 34 HIS A 41 -1 O ARG A 38 N LEU A 25 SHEET 3 A 5 HIS A 46 VAL A 53 -1 O VAL A 50 N PHE A 37 SHEET 4 A 5 ALA A 92 ARG A 96 -1 O THR A 95 N ALA A 49 SHEET 5 A 5 GLY A 78 VAL A 79 -1 N GLY A 78 O VAL A 94 SHEET 1 B 2 LEU A 83 TRP A 85 0 SHEET 2 B 2 VAL A 88 GLY A 90 -1 O VAL A 88 N TRP A 85 SHEET 1 C 2 ILE A 149 LEU A 151 0 SHEET 2 C 2 ALA A 157 LEU A 159 -1 O LYS A 158 N LEU A 150 SHEET 1 D 5 THR B 196 THR B 200 0 SHEET 2 D 5 SER B 204 TYR B 211 -1 O ILE B 206 N LEU B 198 SHEET 3 D 5 SER B 214 PHE B 221 -1 O SER B 214 N TYR B 211 SHEET 4 D 5 GLU B 267 GLU B 273 -1 O MET B 272 N THR B 217 SHEET 5 D 5 ILE B 254 ASP B 260 -1 N GLY B 256 O VAL B 271 SHEET 1 E 2 PHE B 324 ALA B 327 0 SHEET 2 E 2 GLN B 331 LEU B 334 -1 O LYS B 333 N LEU B 325 LINK C ASP A 183 N SEP A 184 1555 1555 1.33 LINK C SEP A 184 N GLY A 185 1555 1555 1.33 LINK C LYS A 230 N TPO A 231 1555 1555 1.33 LINK C TPO A 231 N SEP A 232 1555 1555 1.33 LINK C SEP A 232 N LEU A 233 1555 1555 1.31 LINK OD1 ASN A 148 MG MG A 403 1555 1555 1.86 LINK OD2 ASP A 161 MG MG A 403 1555 1555 2.06 LINK O1A ANP A 401 MG MG A 403 1555 1555 1.80 LINK O1B ANP A 401 MG MG A 403 1555 1555 1.92 LINK O2G ANP A 401 MG MG A 403 1555 1555 2.06 LINK MG MG A 403 O HOH A 593 1555 1555 2.39 CISPEP 1 ASP A 136 PRO A 137 0 0.44 CISPEP 2 PRO B 193 PRO B 194 0 3.57 CISPEP 3 LYS B 264 PRO B 265 0 3.29 SITE 1 AC1 28 VAL A 28 GLY A 29 LYS A 30 GLY A 31 SITE 2 AC1 28 GLY A 32 PHE A 33 GLY A 34 VAL A 36 SITE 3 AC1 28 ALA A 49 LYS A 51 THR A 95 ARG A 96 SITE 4 AC1 28 PHE A 97 MET A 98 SER A 102 ASP A 143 SITE 5 AC1 28 LYS A 145 SER A 147 ASN A 148 LEU A 150 SITE 6 AC1 28 ASP A 161 MG A 403 HOH A 526 HOH A 551 SITE 7 AC1 28 HOH A 574 HOH A 583 HOH A 584 HOH A 594 SITE 1 AC2 8 ARG A 69 ASN A 70 GLU A 71 VAL A 73 SITE 2 AC2 8 LEU A 75 ARG A 96 LYS A 158 HOH A 528 SITE 1 AC3 4 ASN A 148 ASP A 161 ANP A 401 HOH A 593 SITE 1 AC4 1 ASP A 86 SITE 1 AC5 1 ARG A 42 SITE 1 AC6 3 PRO B 215 ARG B 301 ARG B 304 CRYST1 106.443 141.951 107.129 90.00 90.00 90.00 C 2 2 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009395 0.000000 0.000000 0.00000 SCALE2 0.000000 0.007045 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009335 0.00000