HEADER IMMUNE SYSTEM 12-AUG-13 4M7J TITLE CRYSTAL STRUCTURE OF S25-26 IN COMPLEX WITH KDO(2.8)KDO(2.4)KDO TITLE 2 TRISACCHARIDE COMPND MOL_ID: 1; COMPND 2 MOLECULE: S25-26 FAB (IGG1K) HEAVY CHAIN; COMPND 3 CHAIN: H; COMPND 4 MOL_ID: 2; COMPND 5 MOLECULE: S25-26 FAB (IGG1K) LIGHT CHAIN; COMPND 6 CHAIN: L SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 3 ORGANISM_COMMON: MOUSE; SOURCE 4 ORGANISM_TAXID: 10090; SOURCE 5 STRAIN: BALB/C; SOURCE 6 MOL_ID: 2; SOURCE 7 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 8 ORGANISM_COMMON: MOUSE; SOURCE 9 ORGANISM_TAXID: 10090; SOURCE 10 STRAIN: BALB/C KEYWDS BETA-SANDWICH, CARBOHYDRATE/SUGAR BINDING, IMMUNE SYSTEM EXPDTA X-RAY DIFFRACTION AUTHOR O.HAJI-GHASSEMI,S.V.EVANS,S.MULLER-LOENNIES,R.SALDOVA,M.MUNIYAPPA, AUTHOR 2 L.BRADE,P.M.RUDD,D.J.HARVEY,P.KOSMA,H.BRADE REVDAT 6 20-SEP-23 4M7J 1 HETSYN REVDAT 5 29-JUL-20 4M7J 1 COMPND REMARK HETNAM LINK REVDAT 5 2 1 SITE ATOM REVDAT 4 15-NOV-17 4M7J 1 REMARK REVDAT 3 09-JUL-14 4M7J 1 JRNL REVDAT 2 11-JUN-14 4M7J 1 JRNL REVDAT 1 09-APR-14 4M7J 0 JRNL AUTH O.HAJI-GHASSEMI,S.MULLER-LOENNIES,R.SALDOVA,M.MUNIYAPPA, JRNL AUTH 2 L.BRADE,P.M.RUDD,D.J.HARVEY,P.KOSMA,H.BRADE,S.V.EVANS JRNL TITL GROOVE-TYPE RECOGNITION OF CHLAMYDIACEAE-SPECIFIC JRNL TITL 2 LIPOPOLYSACCHARIDE ANTIGEN BY A FAMILY OF ANTIBODIES JRNL TITL 3 POSSESSING AN UNUSUAL VARIABLE HEAVY CHAIN N-LINKED GLYCAN. JRNL REF J.BIOL.CHEM. V. 289 16644 2014 JRNL REFN ISSN 0021-9258 JRNL PMID 24682362 JRNL DOI 10.1074/JBC.M113.528224 REMARK 2 REMARK 2 RESOLUTION. 1.95 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.95 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 24.45 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 3 NUMBER OF REFLECTIONS : 35920 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.213 REMARK 3 R VALUE (WORKING SET) : 0.212 REMARK 3 FREE R VALUE : 0.247 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1793 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.95 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.00 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2455 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.42 REMARK 3 BIN R VALUE (WORKING SET) : 0.2880 REMARK 3 BIN FREE R VALUE SET COUNT : 130 REMARK 3 BIN FREE R VALUE : 0.3230 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3368 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 71 REMARK 3 SOLVENT ATOMS : 219 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 63.07 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 1.57000 REMARK 3 B22 (A**2) : 1.57000 REMARK 3 B33 (A**2) : -5.08000 REMARK 3 B12 (A**2) : 1.57000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.182 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.160 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.166 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 10.632 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.964 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.949 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3530 ; 0.011 ; 0.020 REMARK 3 BOND LENGTHS OTHERS (A): 3216 ; 0.003 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4818 ; 1.482 ; 1.965 REMARK 3 BOND ANGLES OTHERS (DEGREES): 7436 ; 0.842 ; 3.006 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 436 ; 7.313 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 137 ;36.804 ;24.088 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 548 ;16.123 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 14 ;17.261 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 549 ; 0.082 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3934 ; 0.006 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 790 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1750 ; 1.635 ; 2.974 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1749 ; 1.633 ; 2.971 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2184 ; 2.483 ; 4.450 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 6 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : H 1 H 116 REMARK 3 ORIGIN FOR THE GROUP (A): -1.2868 38.9629 -1.4275 REMARK 3 T TENSOR REMARK 3 T11: 0.1861 T22: 0.0717 REMARK 3 T33: 0.0736 T12: -0.0760 REMARK 3 T13: -0.0267 T23: -0.0136 REMARK 3 L TENSOR REMARK 3 L11: 2.5122 L22: 1.4356 REMARK 3 L33: 5.8961 L12: -0.2059 REMARK 3 L13: -2.2509 L23: -0.2598 REMARK 3 S TENSOR REMARK 3 S11: -0.1288 S12: 0.1207 S13: 0.0575 REMARK 3 S21: 0.1420 S22: 0.0512 S23: -0.0093 REMARK 3 S31: 0.1521 S32: 0.0400 S33: 0.0777 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : H 117 H 164 REMARK 3 ORIGIN FOR THE GROUP (A): -6.3225 22.4637 30.2456 REMARK 3 T TENSOR REMARK 3 T11: 0.3894 T22: 0.1474 REMARK 3 T33: 0.5393 T12: 0.1384 REMARK 3 T13: 0.0984 T23: 0.1393 REMARK 3 L TENSOR REMARK 3 L11: 1.9430 L22: 5.4884 REMARK 3 L33: 4.6093 L12: 1.3007 REMARK 3 L13: 0.7445 L23: -0.5110 REMARK 3 S TENSOR REMARK 3 S11: -0.0903 S12: -0.2924 S13: -0.9606 REMARK 3 S21: -0.3283 S22: 0.1128 S23: -0.5763 REMARK 3 S31: 0.7955 S32: 0.1004 S33: -0.0225 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : H 165 H 214 REMARK 3 ORIGIN FOR THE GROUP (A): -4.3053 20.3402 30.5702 REMARK 3 T TENSOR REMARK 3 T11: 0.4803 T22: 0.3675 REMARK 3 T33: 0.6037 T12: 0.2276 REMARK 3 T13: 0.2430 T23: 0.2548 REMARK 3 L TENSOR REMARK 3 L11: 2.6757 L22: 9.4637 REMARK 3 L33: 4.6166 L12: 3.6336 REMARK 3 L13: 0.6408 L23: -2.0087 REMARK 3 S TENSOR REMARK 3 S11: -0.1768 S12: -0.3619 S13: -1.0385 REMARK 3 S21: -0.1601 S22: 0.1742 S23: -1.0612 REMARK 3 S31: 0.5829 S32: 0.1932 S33: 0.0026 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : L 1 L 109 REMARK 3 ORIGIN FOR THE GROUP (A): -9.0145 20.8976 -8.5307 REMARK 3 T TENSOR REMARK 3 T11: 0.5839 T22: 0.4450 REMARK 3 T33: 0.3148 T12: -0.3154 REMARK 3 T13: 0.2261 T23: -0.1801 REMARK 3 L TENSOR REMARK 3 L11: 1.6104 L22: 5.0138 REMARK 3 L33: 1.5067 L12: 1.3048 REMARK 3 L13: -1.1125 L23: -1.3249 REMARK 3 S TENSOR REMARK 3 S11: -0.4128 S12: 0.3604 S13: -0.5041 REMARK 3 S21: 0.0817 S22: 0.1739 S23: 0.3652 REMARK 3 S31: 0.6270 S32: -0.1201 S33: 0.2388 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : L 110 L 115 REMARK 3 ORIGIN FOR THE GROUP (A): -12.3110 5.2403 8.2002 REMARK 3 T TENSOR REMARK 3 T11: 0.9504 T22: 0.2434 REMARK 3 T33: 0.5775 T12: -0.1591 REMARK 3 T13: 0.1702 T23: -0.1973 REMARK 3 L TENSOR REMARK 3 L11: 10.3114 L22: 1.1010 REMARK 3 L33: 11.5281 L12: -2.8110 REMARK 3 L13: -8.7252 L23: 1.2045 REMARK 3 S TENSOR REMARK 3 S11: -0.8975 S12: 0.0810 S13: 0.2644 REMARK 3 S21: 0.3800 S22: 0.0442 S23: -0.3959 REMARK 3 S31: 0.1421 S32: -0.3204 S33: 0.8533 REMARK 3 REMARK 3 TLS GROUP : 6 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : L 116 L 214 REMARK 3 ORIGIN FOR THE GROUP (A): -20.2993 17.9702 27.0520 REMARK 3 T TENSOR REMARK 3 T11: 0.5094 T22: 0.0814 REMARK 3 T33: 0.1787 T12: -0.0107 REMARK 3 T13: 0.0722 T23: -0.0071 REMARK 3 L TENSOR REMARK 3 L11: 2.3863 L22: 3.5361 REMARK 3 L33: 3.3457 L12: 1.0561 REMARK 3 L13: -0.8002 L23: 1.0365 REMARK 3 S TENSOR REMARK 3 S11: -0.3061 S12: 0.0973 S13: -0.3784 REMARK 3 S21: -0.6034 S22: 0.0658 S23: -0.2538 REMARK 3 S31: 0.4343 S32: -0.3094 S33: 0.2404 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS U VALUES : WITH TLS ADDED REMARK 4 REMARK 4 4M7J COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 03-SEP-13. REMARK 100 THE DEPOSITION ID IS D_1000081564. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 23-AUG-11 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : CLSI REMARK 200 BEAMLINE : 08ID-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9794 REMARK 200 MONOCHROMATOR : DOUBLE CRYSTAL MONOCHROMATOR REMARK 200 OPTICS : VERTICAL FOCUSING MIRROR REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 300 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 35967 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.950 REMARK 200 RESOLUTION RANGE LOW (A) : 25.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.200 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 13.70 REMARK 200 R MERGE (I) : 0.06400 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 11.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.95 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.02 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 12.80 REMARK 200 R MERGE FOR SHELL (I) : 0.55600 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 1T2Q REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 50.90 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.51 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2M POTASSIUM CHLORIDE, 0.05M HEPES, REMARK 280 35% (V/V) PENTAERYTHRITOL PROPOXYLATE (5/4 PO/OH), PH 7.5, VAPOR REMARK 280 DIFFUSION, HANGING DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 32 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z+1/3 REMARK 290 6555 -X,-X+Y,-Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 99.92867 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 49.96433 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 49.96433 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 99.92867 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 5730 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 20120 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -21.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: H, L, A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 O2 PEG L 301 LIES ON A SPECIAL POSITION. REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 ND2 ASN H 85 O5 NAG H 301 2.14 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER H 15 -2.16 78.12 REMARK 500 SER H 76 42.98 71.83 REMARK 500 ALA H 101 92.62 -68.79 REMARK 500 ALA H 130 -61.35 -100.78 REMARK 500 ASN H 155 54.81 37.55 REMARK 500 SER H 172 -123.88 64.61 REMARK 500 VAL L 51 -54.03 73.47 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 ALA H 130 GLN H 131 -37.73 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 K H 302 K REMARK 620 N RES CSSEQI ATOM REMARK 620 1 THR H 30 OG1 REMARK 620 2 THR H 30 O 68.3 REMARK 620 3 THR H 31 OG1 92.2 81.2 REMARK 620 N 1 2 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4M7Z RELATED DB: PDB REMARK 900 SAME PROTEIN, UNLIGANDED STRUCTURE 1 REMARK 900 RELATED ID: 4M93 RELATED DB: PDB REMARK 900 SAME PROTEIN, UNLIGANDED STRUCTURE 2 REMARK 900 RELATED ID: 4MA1 RELATED DB: PDB REMARK 900 SAME PROTEIN, UNLIGANDED STRUCTURE 3 DBREF 4M7J H 1 214 PDB 4M7J 4M7J 1 214 DBREF 4M7J L 1 214 PDB 4M7J 4M7J 1 214 SEQRES 1 H 219 GLU VAL GLN LEU LYS GLU SER GLY PRO GLY LEU VAL GLN SEQRES 2 H 219 PRO SER GLN SER LEU SER ILE THR CYS THR VAL SER GLY SEQRES 3 H 219 PHE SER LEU THR THR TYR GLY VAL HIS TRP VAL ARG GLN SEQRES 4 H 219 SER PRO GLY LYS GLY LEU GLU TRP LEU GLY VAL ILE TRP SEQRES 5 H 219 SER GLY GLY SER THR ASP TYR ASN ALA ALA PHE ILE SER SEQRES 6 H 219 ARG LEU SER ILE SER LYS ASP ASN SER LYS SER HIS VAL SEQRES 7 H 219 PHE PHE LYS MET ASN SER LEU GLN ALA ASN ASP THR ALA SEQRES 8 H 219 ILE TYR TYR CYS ALA ARG MET ARG ILE THR THR ASP TRP SEQRES 9 H 219 PHE ALA TYR TRP GLY GLN GLY THR LEU VAL THR VAL SER SEQRES 10 H 219 ALA ALA LYS THR THR PRO PRO SER VAL TYR PRO LEU ALA SEQRES 11 H 219 PRO GLY SER ALA ALA GLN THR ASN SER MET VAL THR LEU SEQRES 12 H 219 GLY CYS LEU VAL LYS GLY TYR PHE PRO GLU PRO VAL THR SEQRES 13 H 219 VAL THR TRP ASN SER GLY SER LEU SER SER GLY VAL HIS SEQRES 14 H 219 THR PHE PRO ALA VAL LEU GLN SER ASP LEU TYR THR LEU SEQRES 15 H 219 SER SER SER VAL THR VAL PRO SER SER THR TRP PRO SER SEQRES 16 H 219 GLU THR VAL THR CYS ASN VAL ALA HIS PRO ALA SER SER SEQRES 17 H 219 THR LYS VAL ASP LYS LYS ILE VAL PRO ARG ASP SEQRES 1 L 219 ASP ILE LEU MET ASN GLN THR PRO LEU SER LEU PRO VAL SEQRES 2 L 219 SER LEU GLY ASP GLN ALA SER ILE SER CYS ARG SER SER SEQRES 3 L 219 GLN TYR ILE VAL HIS ARG ASN GLY ASN THR TYR LEU GLU SEQRES 4 L 219 TRP TYR LEU GLN LYS PRO GLY GLN SER PRO LYS LEU LEU SEQRES 5 L 219 ILE TYR LYS VAL SER ASN ARG PHE SER GLY VAL PRO ASP SEQRES 6 L 219 ARG PHE SER GLY SER GLY SER GLY THR ASP PHE THR LEU SEQRES 7 L 219 LYS ILE SER ARG VAL GLU ALA GLU ASP LEU GLY VAL TYR SEQRES 8 L 219 TYR CYS PHE GLN GLY SER HIS VAL PRO TYR THR PHE GLY SEQRES 9 L 219 GLY GLY THR LYS LEU GLU LEU LYS ARG ALA ASP ALA ALA SEQRES 10 L 219 PRO THR VAL SER ILE PHE PRO PRO SER SER GLU GLN LEU SEQRES 11 L 219 THR SER GLY GLY ALA SER VAL VAL CYS PHE LEU ASN ASN SEQRES 12 L 219 PHE TYR PRO LYS ASP ILE ASN VAL LYS TRP LYS ILE ASP SEQRES 13 L 219 GLY SER GLU ARG GLN ASN GLY VAL LEU ASN SER TRP THR SEQRES 14 L 219 ASP GLN ASP SER LYS ASP SER THR TYR SER MET SER SER SEQRES 15 L 219 THR LEU THR LEU THR LYS ASP GLU TYR GLU ARG HIS ASN SEQRES 16 L 219 SER TYR THR CYS GLU ALA THR HIS LYS THR SER THR SER SEQRES 17 L 219 PRO ILE VAL LYS SER PHE ASN ARG ASN GLU CYS MODRES 4M7J ASN H 85 ASN GLYCOSYLATION SITE HET KDA A 1 19 HET KDO A 2 15 HET KDO A 3 15 HET NAG H 301 14 HET K H 302 1 HET PEG L 301 7 HETNAM KDA PROP-2-EN-1-YL 3-DEOXY-ALPHA-D-MANNO-OCT-2- HETNAM 2 KDA ULOPYRANOSIDONIC ACID HETNAM KDO 3-DEOXY-ALPHA-D-MANNO-OCT-2-ULOPYRANOSONIC ACID HETNAM NAG 2-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE HETNAM K POTASSIUM ION HETNAM PEG DI(HYDROXYETHYL)ETHER HETSYN KDA (3-DEOXY-D-MANNO-OCT-2-ULOSONIC ACID)-2-O-ALLYL; PROP- HETSYN 2 KDA 2-EN-1-YL 3-DEOXY-ALPHA-D-MANNO-OCT-2-ULOSIDONIC ACID; HETSYN 3 KDA PROP-2-EN-1-YL 3-DEOXY-D-MANNO-OCT-2-ULOSIDONIC ACID; HETSYN 4 KDA PROP-2-EN-1-YL 3-DEOXY-MANNO-OCT-2-ULOSIDONIC ACID HETSYN KDO 3-DEOXY-D-MANNO-OCT-2-ULOPYRANOSONIC ACID; 2-KETO-3- HETSYN 2 KDO DEOXY-D-MANNOOCTANOIC ACID; 3-DEOXY-ALPHA-D-MANNO-OCT- HETSYN 3 KDO 2-ULOSONIC ACID; 3-DEOXY-D-MANNO-OCT-2-ULOSONIC ACID; HETSYN 4 KDO 3-DEOXY-MANNO-OCT-2-ULOSONIC ACID HETSYN NAG N-ACETYL-BETA-D-GLUCOSAMINE; 2-ACETAMIDO-2-DEOXY-BETA- HETSYN 2 NAG D-GLUCOSE; 2-ACETAMIDO-2-DEOXY-D-GLUCOSE; 2-ACETAMIDO- HETSYN 3 NAG 2-DEOXY-GLUCOSE; N-ACETYL-D-GLUCOSAMINE FORMUL 3 KDA C11 H18 O8 FORMUL 3 KDO 2(C8 H14 O8) FORMUL 4 NAG C8 H15 N O6 FORMUL 5 K K 1+ FORMUL 6 PEG C4 H10 O3 FORMUL 7 HOH *219(H2 O) HELIX 1 1 GLN H 83 THR H 87 5 5 HELIX 2 2 SER H 156 SER H 158 5 3 HELIX 3 3 PRO H 200 SER H 203 5 4 HELIX 4 4 GLU L 79 LEU L 83 5 5 HELIX 5 5 SER L 121 SER L 127 1 7 HELIX 6 6 LYS L 183 GLU L 187 1 5 SHEET 1 A 4 GLN H 3 SER H 7 0 SHEET 2 A 4 LEU H 18 SER H 25 -1 O THR H 23 N LYS H 5 SHEET 3 A 4 HIS H 77 MET H 82 -1 O VAL H 78 N CYS H 22 SHEET 4 A 4 LEU H 67 ASP H 72 -1 N SER H 70 O PHE H 79 SHEET 1 B 6 LEU H 11 VAL H 12 0 SHEET 2 B 6 THR H 107 VAL H 111 1 O THR H 110 N VAL H 12 SHEET 3 B 6 ALA H 88 ALA H 93 -1 N ALA H 88 O VAL H 109 SHEET 4 B 6 VAL H 34 SER H 40 -1 N VAL H 37 O TYR H 91 SHEET 5 B 6 GLY H 44 ILE H 51 -1 O LEU H 48 N TRP H 36 SHEET 6 B 6 THR H 57 TYR H 59 -1 O ASP H 58 N VAL H 50 SHEET 1 C 4 SER H 120 LEU H 124 0 SHEET 2 C 4 VAL H 136 TYR H 145 -1 O LEU H 141 N TYR H 122 SHEET 3 C 4 LEU H 174 VAL H 183 -1 O TYR H 175 N TYR H 145 SHEET 4 C 4 VAL H 163 THR H 165 -1 N HIS H 164 O SER H 180 SHEET 1 D 4 SER H 120 LEU H 124 0 SHEET 2 D 4 VAL H 136 TYR H 145 -1 O LEU H 141 N TYR H 122 SHEET 3 D 4 LEU H 174 VAL H 183 -1 O TYR H 175 N TYR H 145 SHEET 4 D 4 VAL H 169 GLN H 171 -1 N GLN H 171 O LEU H 174 SHEET 1 E 3 THR H 151 TRP H 154 0 SHEET 2 E 3 THR H 194 HIS H 199 -1 O ASN H 196 N THR H 153 SHEET 3 E 3 THR H 204 LYS H 209 -1 O VAL H 206 N VAL H 197 SHEET 1 F 4 MET L 4 THR L 7 0 SHEET 2 F 4 ALA L 19 SER L 25 -1 O SER L 22 N THR L 7 SHEET 3 F 4 ASP L 70 ILE L 75 -1 O LEU L 73 N ILE L 21 SHEET 4 F 4 PHE L 62 SER L 67 -1 N SER L 63 O LYS L 74 SHEET 1 G 6 SER L 10 VAL L 13 0 SHEET 2 G 6 THR L 102 LEU L 106 1 O LYS L 103 N LEU L 11 SHEET 3 G 6 GLY L 84 GLN L 90 -1 N GLY L 84 O LEU L 104 SHEET 4 G 6 LEU L 33 GLN L 38 -1 N TYR L 36 O TYR L 87 SHEET 5 G 6 LYS L 45 TYR L 49 -1 O LEU L 47 N TRP L 35 SHEET 6 G 6 ASN L 53 ARG L 54 -1 O ASN L 53 N TYR L 49 SHEET 1 H 4 SER L 10 VAL L 13 0 SHEET 2 H 4 THR L 102 LEU L 106 1 O LYS L 103 N LEU L 11 SHEET 3 H 4 GLY L 84 GLN L 90 -1 N GLY L 84 O LEU L 104 SHEET 4 H 4 THR L 97 PHE L 98 -1 O THR L 97 N GLN L 90 SHEET 1 I 4 THR L 114 PHE L 118 0 SHEET 2 I 4 GLY L 129 PHE L 139 -1 O VAL L 133 N PHE L 118 SHEET 3 I 4 TYR L 173 THR L 182 -1 O MET L 175 N LEU L 136 SHEET 4 I 4 VAL L 159 TRP L 163 -1 N LEU L 160 O THR L 178 SHEET 1 J 4 SER L 153 ARG L 155 0 SHEET 2 J 4 ASN L 145 ILE L 150 -1 N ILE L 150 O SER L 153 SHEET 3 J 4 SER L 191 THR L 197 -1 O GLU L 195 N LYS L 147 SHEET 4 J 4 ILE L 205 ASN L 210 -1 O ILE L 205 N ALA L 196 SSBOND 1 CYS H 22 CYS H 92 1555 1555 2.10 SSBOND 2 CYS H 140 CYS H 195 1555 1555 2.02 SSBOND 3 CYS L 23 CYS L 88 1555 1555 2.09 SSBOND 4 CYS L 134 CYS L 194 1555 1555 2.04 LINK ND2 ASN H 85 C1 NAG H 301 1555 1555 1.46 LINK O4 KDA A 1 C2 KDO A 2 1555 1555 1.43 LINK O8 KDO A 2 C2 KDO A 3 1555 1555 1.44 LINK OG1 THR H 30 K K H 302 1555 1555 2.79 LINK O THR H 30 K K H 302 1555 1555 3.04 LINK OG1 THR H 31 K K H 302 1555 1555 2.76 CISPEP 1 ALA H 129 ALA H 130 0 -9.82 CISPEP 2 SER H 134 MET H 135 0 -3.26 CISPEP 3 PHE H 146 PRO H 147 0 -7.15 CISPEP 4 GLU H 148 PRO H 149 0 2.21 CISPEP 5 TRP H 188 PRO H 189 0 4.41 CISPEP 6 THR L 7 PRO L 8 0 -8.54 CISPEP 7 VAL L 94 PRO L 95 0 3.41 CISPEP 8 TYR L 140 PRO L 141 0 5.97 CRYST1 74.464 74.464 149.893 90.00 90.00 120.00 P 32 2 1 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.013429 0.007753 0.000000 0.00000 SCALE2 0.000000 0.015507 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006671 0.00000