HEADER TRANSFERASE/TRANSFERASE INHIBITOR 12-AUG-13 4M7Y TITLE STAPHYLOCOCCUS AUREUS TYPE II PANTOTHENATE KINASE IN COMPLEX WITH A TITLE 2 PANTOTHENATE ANALOG COMPND MOL_ID: 1; COMPND 2 MOLECULE: TYPE II PANTOTHENATE KINASE; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: PANK-II, PANTOTHENIC ACID KINASE; COMPND 5 EC: 2.7.1.33; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: STAPHYLOCOCCUS AUREUS SUBSP. AUREUS; SOURCE 3 ORGANISM_TAXID: 196620; SOURCE 4 STRAIN: MW2; SOURCE 5 GENE: COAW, MW2054; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21-V2R-TR KEYWDS PANTOTHENATE KINASE, INHIBITOR, ANTIBACTERIAL, STRUCTURAL GENOMICS, KEYWDS 2 STRUCTURAL GENOMICS CONSORTIUM, SGC, TRANSFERASE-TRANSFERASE KEYWDS 3 INHIBITOR COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR K.MOTTAGHI,B.HONG,W.TEMPEL,H.PARK,STRUCTURAL GENOMICS CONSORTIUM AUTHOR 2 (SGC) REVDAT 4 20-SEP-23 4M7Y 1 REMARK SEQADV REVDAT 3 28-DEC-16 4M7Y 1 JRNL REVDAT 2 10-AUG-16 4M7Y 1 JRNL REVDAT 1 03-SEP-14 4M7Y 0 JRNL AUTH S.J.HUGHES,L.BARNARD,K.MOTTAGHI,W.TEMPEL,T.ANTOSHCHENKO, JRNL AUTH 2 B.S.HONG,A.ALLALI-HASSANI,D.SMIL,M.VEDADI,E.STRAUSS,H.W.PARK JRNL TITL DISCOVERY OF POTENT PANTOTHENAMIDE INHIBITORS OF JRNL TITL 2 STAPHYLOCOCCUS AUREUS PANTOTHENATE KINASE THROUGH A MINIMAL JRNL TITL 3 SAR STUDY: INHIBITION IS DUE TO TRAPPING OF THE PRODUCT. JRNL REF ACS INFECT DIS V. 2 627 2016 JRNL REFN ESSN 2373-8227 JRNL PMID 27759386 JRNL DOI 10.1021/ACSINFECDIS.6B00090 REMARK 2 REMARK 2 RESOLUTION. 1.80 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.7.0027 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.80 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 26.53 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.2 REMARK 3 NUMBER OF REFLECTIONS : 48796 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : THIN SHELLS (SFTOOLS) REMARK 3 R VALUE (WORKING + TEST SET) : 0.178 REMARK 3 R VALUE (WORKING SET) : 0.176 REMARK 3 FREE R VALUE : 0.220 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.250 REMARK 3 FREE R VALUE TEST SET COUNT : 2074 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.80 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.85 REMARK 3 REFLECTION IN BIN (WORKING SET) : 3153 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.09 REMARK 3 BIN R VALUE (WORKING SET) : 0.2710 REMARK 3 BIN FREE R VALUE SET COUNT : 421 REMARK 3 BIN FREE R VALUE : 0.2920 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3950 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 159 REMARK 3 SOLVENT ATOMS : 193 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 33.94 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 31.73 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 2.13600 REMARK 3 B22 (A**2) : -0.64600 REMARK 3 B33 (A**2) : -1.72100 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -0.59900 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.126 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.124 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.099 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 6.661 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.967 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.951 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 4282 ; 0.014 ; 0.020 REMARK 3 BOND LENGTHS OTHERS (A): 3975 ; 0.002 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 5863 ; 1.541 ; 1.976 REMARK 3 BOND ANGLES OTHERS (DEGREES): 9025 ; 0.751 ; 3.002 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 559 ; 5.436 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 181 ;36.499 ;24.696 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 647 ;11.434 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 17 ;15.775 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 678 ; 0.076 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 4923 ; 0.004 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 988 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 2 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 1 A 266 REMARK 3 RESIDUE RANGE : A 301 A 302 REMARK 3 ORIGIN FOR THE GROUP (A): -16.1775 22.4600 -23.9676 REMARK 3 T TENSOR REMARK 3 T11: 0.0207 T22: 0.0242 REMARK 3 T33: 0.0522 T12: 0.0083 REMARK 3 T13: 0.0054 T23: 0.0001 REMARK 3 L TENSOR REMARK 3 L11: 0.9166 L22: 1.2365 REMARK 3 L33: 2.9544 L12: 0.1674 REMARK 3 L13: 0.4013 L23: 0.5153 REMARK 3 S TENSOR REMARK 3 S11: -0.0312 S12: -0.1160 S13: 0.0286 REMARK 3 S21: 0.1303 S22: 0.0125 S23: -0.0626 REMARK 3 S31: 0.0248 S32: 0.1087 S33: 0.0187 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 2 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 1 B 266 REMARK 3 RESIDUE RANGE : B 301 B 302 REMARK 3 ORIGIN FOR THE GROUP (A): -10.2087 7.9957 -46.8829 REMARK 3 T TENSOR REMARK 3 T11: 0.0853 T22: 0.1007 REMARK 3 T33: 0.0801 T12: 0.0507 REMARK 3 T13: 0.0453 T23: -0.0249 REMARK 3 L TENSOR REMARK 3 L11: 1.1325 L22: 1.8968 REMARK 3 L33: 2.2046 L12: 0.4344 REMARK 3 L13: 0.3890 L23: 0.9279 REMARK 3 S TENSOR REMARK 3 S11: -0.0116 S12: 0.1354 S13: -0.1072 REMARK 3 S21: -0.0774 S22: 0.1197 S23: -0.1999 REMARK 3 S31: 0.2743 S32: 0.3818 S33: -0.1080 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK BULK SOLVENT REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: REMARK 3 HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS U VALUES: WITH REMARK 3 TLS ADDED. REMARK 3 INHIBITOR RESTRAINTS WERE BASED ON PRODRG CALCULATIONS. COOT AND REMARK 3 THE MOLPROBITY SERVER WERE ALSO USED DURING REFINEMENT. SOME DUMMY REMARK 3 ATOMS AND PHOSPHATE IONS B303, B304, A303, B305 OF THE MODEL REMARK 3 REPRESENT ELECTRON DENSITY THAT APPEARS TO ARISE FROM A LARGER, REMARK 3 UNIDENTIFIED MOLECULE. REMARK 4 REMARK 4 4M7Y COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 05-SEP-13. REMARK 100 THE DEPOSITION ID IS D_1000081579. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 24-MAR-11 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU FR-E REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : RIGAKU RAXIS REMARK 200 INTENSITY-INTEGRATION SOFTWARE : NULL REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 48878 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.800 REMARK 200 RESOLUTION RANGE LOW (A) : 30.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.4 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : 0.07900 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 14.8700 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.80 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.85 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.0 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.95000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.000 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 4M7X REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 46.30 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.30 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.01 M INHIBITOR, 0.01 M MAGNESIUM REMARK 280 CHLORIDE, 0.01 M ATP WERE ADDED TO THE PROTEIN SAMPLE. CRYSTAL REMARK 280 CONDITION: 2.5 M AMMONIUM SULFATE, 0.1 M BTP, 1.1 % W/V REMARK 280 CYCLOHEXYLETHANOYL-N-HYDROXYETHYLGLUCAMIDE., PH 7.0, VAPOR REMARK 280 DIFFUSION REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 70.98000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 28.06500 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 70.98000 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 28.06500 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: AS PER THE AUTHORS THE BIOLOGICAL ASSEMBLY IS UNKNOWN REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 8420 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 19740 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -111.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH B 458 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 LYS A 267 REMARK 465 HIS A 268 REMARK 465 HIS A 269 REMARK 465 HIS A 270 REMARK 465 HIS A 271 REMARK 465 HIS A 272 REMARK 465 HIS A 273 REMARK 465 LYS B 267 REMARK 465 HIS B 268 REMARK 465 HIS B 269 REMARK 465 HIS B 270 REMARK 465 HIS B 271 REMARK 465 HIS B 272 REMARK 465 HIS B 273 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 2 CE NZ REMARK 470 GLN A 18 CG CD OE1 NE2 REMARK 470 ASN A 20 CG OD1 ND2 REMARK 470 GLN A 21 CG CD OE1 NE2 REMARK 470 LYS A 25 CD CE NZ REMARK 470 LYS A 30 CG CD CE NZ REMARK 470 GLU A 37 CG CD OE1 OE2 REMARK 470 GLN A 41 CG CD OE1 NE2 REMARK 470 GLN A 43 CG CD OE1 NE2 REMARK 470 GLU A 45 CD OE1 OE2 REMARK 470 LYS A 46 CD CE NZ REMARK 470 GLU A 59 CG CD OE1 OE2 REMARK 470 LYS A 83 CD CE NZ REMARK 470 GLN A 109 CG CD OE1 NE2 REMARK 470 LYS A 138 NZ REMARK 470 ASN A 150 OD1 ND2 REMARK 470 LYS A 161 CG CD CE NZ REMARK 470 ASP A 162 CG OD1 OD2 REMARK 470 LYS A 216 NZ REMARK 470 LYS A 247 CE NZ REMARK 470 ASP B 19 CG OD1 OD2 REMARK 470 ASN B 20 CG OD1 ND2 REMARK 470 GLN B 21 CG CD OE1 NE2 REMARK 470 LYS B 25 CG CD CE NZ REMARK 470 LYS B 30 CE NZ REMARK 470 GLN B 43 CD OE1 NE2 REMARK 470 LYS B 46 CG CD CE NZ REMARK 470 GLU B 59 CG CD OE1 OE2 REMARK 470 ASN B 62 OD1 ND2 REMARK 470 LYS B 83 CD CE NZ REMARK 470 GLN B 109 CG CD OE1 NE2 REMARK 470 ARG B 112 NE CZ NH1 NH2 REMARK 470 GLN B 133 CD OE1 NE2 REMARK 470 ASP B 148 CG OD1 OD2 REMARK 470 ASN B 150 CG OD1 ND2 REMARK 470 LYS B 161 CG CD CE NZ REMARK 470 ASP B 184 CG OD1 OD2 REMARK 470 SER B 190 OG REMARK 470 LYS B 216 NZ REMARK 470 GLU B 218 CG CD OE1 OE2 REMARK 470 LYS B 235 NZ REMARK 470 LYS B 247 CD CE NZ REMARK 470 GLU B 266 CG CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS A 161 -75.09 -54.91 REMARK 500 ASP A 162 46.52 -109.74 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 GLY B 86 HIS B 87 -147.24 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE 2GH A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ADP A 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PO4 A 303 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PO4 A 304 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE 2GH B 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ADP B 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PO4 B 303 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PO4 B 304 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PO4 B 305 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PO4 B 311 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PO4 B 312 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4M7X RELATED DB: PDB DBREF 4M7Y A 1 267 UNP Q8NVG0 COAW_STAAW 1 267 DBREF 4M7Y B 1 267 UNP Q8NVG0 COAW_STAAW 1 267 SEQADV 4M7Y HIS A 268 UNP Q8NVG0 EXPRESSION TAG SEQADV 4M7Y HIS A 269 UNP Q8NVG0 EXPRESSION TAG SEQADV 4M7Y HIS A 270 UNP Q8NVG0 EXPRESSION TAG SEQADV 4M7Y HIS A 271 UNP Q8NVG0 EXPRESSION TAG SEQADV 4M7Y HIS A 272 UNP Q8NVG0 EXPRESSION TAG SEQADV 4M7Y HIS A 273 UNP Q8NVG0 EXPRESSION TAG SEQADV 4M7Y HIS B 268 UNP Q8NVG0 EXPRESSION TAG SEQADV 4M7Y HIS B 269 UNP Q8NVG0 EXPRESSION TAG SEQADV 4M7Y HIS B 270 UNP Q8NVG0 EXPRESSION TAG SEQADV 4M7Y HIS B 271 UNP Q8NVG0 EXPRESSION TAG SEQADV 4M7Y HIS B 272 UNP Q8NVG0 EXPRESSION TAG SEQADV 4M7Y HIS B 273 UNP Q8NVG0 EXPRESSION TAG SEQRES 1 A 273 MET LYS VAL GLY ILE ASP ALA GLY GLY THR LEU ILE LYS SEQRES 2 A 273 ILE VAL GLN GLU GLN ASP ASN GLN ARG THR PHE LYS THR SEQRES 3 A 273 GLU LEU THR LYS ASN ILE ASP GLN VAL VAL GLU TRP LEU SEQRES 4 A 273 ASN GLN GLN GLN ILE GLU LYS LEU CYS LEU THR GLY GLY SEQRES 5 A 273 ASN ALA GLY VAL ILE ALA GLU ASN ILE ASN ILE PRO ALA SEQRES 6 A 273 GLN ILE PHE VAL GLU PHE ASP ALA ALA SER GLN GLY LEU SEQRES 7 A 273 GLY ILE LEU LEU LYS GLU GLN GLY HIS ASP LEU ALA ASP SEQRES 8 A 273 TYR ILE PHE ALA ASN VAL GLY THR GLY THR SER LEU HIS SEQRES 9 A 273 TYR PHE ASP GLY GLN SER GLN ARG ARG VAL GLY GLY ILE SEQRES 10 A 273 GLY THR GLY GLY GLY MET ILE GLN GLY LEU GLY TYR LEU SEQRES 11 A 273 LEU SER GLN ILE THR ASP TYR LYS GLN LEU THR ASP MET SEQRES 12 A 273 ALA GLN HIS GLY ASP ARG ASN THR ILE ASP LEU LYS VAL SEQRES 13 A 273 ARG HIS ILE TYR LYS ASP THR GLU PRO PRO ILE PRO GLY SEQRES 14 A 273 ASP LEU THR ALA ALA ASN PHE GLY HIS VAL LEU HIS HIS SEQRES 15 A 273 LEU ASP ALA ASP PHE THR PRO SER ASN LYS LEU ALA ALA SEQRES 16 A 273 VAL ILE GLY VAL VAL GLY GLU VAL VAL THR THR MET ALA SEQRES 17 A 273 ILE THR VAL ALA ARG GLU PHE LYS THR GLU ASN ILE VAL SEQRES 18 A 273 TYR ILE GLY SER SER PHE HIS ASN ASN ALA LEU LEU ARG SEQRES 19 A 273 LYS VAL VAL GLU ASP TYR THR VAL LEU ARG GLY CYS LYS SEQRES 20 A 273 PRO TYR TYR VAL GLU ASN GLY ALA PHE SER GLY ALA ILE SEQRES 21 A 273 GLY ALA LEU TYR LEU GLU LYS HIS HIS HIS HIS HIS HIS SEQRES 1 B 273 MET LYS VAL GLY ILE ASP ALA GLY GLY THR LEU ILE LYS SEQRES 2 B 273 ILE VAL GLN GLU GLN ASP ASN GLN ARG THR PHE LYS THR SEQRES 3 B 273 GLU LEU THR LYS ASN ILE ASP GLN VAL VAL GLU TRP LEU SEQRES 4 B 273 ASN GLN GLN GLN ILE GLU LYS LEU CYS LEU THR GLY GLY SEQRES 5 B 273 ASN ALA GLY VAL ILE ALA GLU ASN ILE ASN ILE PRO ALA SEQRES 6 B 273 GLN ILE PHE VAL GLU PHE ASP ALA ALA SER GLN GLY LEU SEQRES 7 B 273 GLY ILE LEU LEU LYS GLU GLN GLY HIS ASP LEU ALA ASP SEQRES 8 B 273 TYR ILE PHE ALA ASN VAL GLY THR GLY THR SER LEU HIS SEQRES 9 B 273 TYR PHE ASP GLY GLN SER GLN ARG ARG VAL GLY GLY ILE SEQRES 10 B 273 GLY THR GLY GLY GLY MET ILE GLN GLY LEU GLY TYR LEU SEQRES 11 B 273 LEU SER GLN ILE THR ASP TYR LYS GLN LEU THR ASP MET SEQRES 12 B 273 ALA GLN HIS GLY ASP ARG ASN THR ILE ASP LEU LYS VAL SEQRES 13 B 273 ARG HIS ILE TYR LYS ASP THR GLU PRO PRO ILE PRO GLY SEQRES 14 B 273 ASP LEU THR ALA ALA ASN PHE GLY HIS VAL LEU HIS HIS SEQRES 15 B 273 LEU ASP ALA ASP PHE THR PRO SER ASN LYS LEU ALA ALA SEQRES 16 B 273 VAL ILE GLY VAL VAL GLY GLU VAL VAL THR THR MET ALA SEQRES 17 B 273 ILE THR VAL ALA ARG GLU PHE LYS THR GLU ASN ILE VAL SEQRES 18 B 273 TYR ILE GLY SER SER PHE HIS ASN ASN ALA LEU LEU ARG SEQRES 19 B 273 LYS VAL VAL GLU ASP TYR THR VAL LEU ARG GLY CYS LYS SEQRES 20 B 273 PRO TYR TYR VAL GLU ASN GLY ALA PHE SER GLY ALA ILE SEQRES 21 B 273 GLY ALA LEU TYR LEU GLU LYS HIS HIS HIS HIS HIS HIS HET 2GH A 301 24 HET ADP A 302 27 HET PO4 A 303 5 HET PO4 A 304 5 HET UNX A 305 1 HET UNX A 306 1 HET UNX A 307 1 HET UNX A 308 1 HET UNX A 309 1 HET UNX A 310 1 HET UNX A 311 1 HET UNX A 312 1 HET UNX A 313 1 HET UNX A 314 1 HET 2GH B 301 24 HET ADP B 302 27 HET PO4 B 303 5 HET PO4 B 304 5 HET PO4 B 305 5 HET UNX B 306 1 HET UNX B 307 1 HET UNX B 308 1 HET UNX B 309 1 HET UNX B 310 1 HET PO4 B 311 5 HET PO4 B 312 5 HET UNX B 313 1 HET UNX B 314 1 HET UNX B 315 1 HET UNX B 316 1 HET UNX B 317 1 HET UNX B 318 1 HET UNX B 319 1 HETNAM 2GH N~3~-[(2R)-2-HYDROXY-3,3-DIMETHYL-4-(PHOSPHONOOXY) HETNAM 2 2GH BUTANOYL]-N-PENTYL-BETA-ALANINAMIDE HETNAM ADP ADENOSINE-5'-DIPHOSPHATE HETNAM PO4 PHOSPHATE ION HETNAM UNX UNKNOWN ATOM OR ION FORMUL 3 2GH 2(C14 H29 N2 O7 P) FORMUL 4 ADP 2(C10 H15 N5 O10 P2) FORMUL 5 PO4 7(O4 P 3-) FORMUL 7 UNX 22(X) FORMUL 36 HOH *193(H2 O) HELIX 1 1 ASN A 31 ASN A 40 1 10 HELIX 2 2 ASN A 53 ILE A 61 1 9 HELIX 3 3 VAL A 69 GLN A 85 1 17 HELIX 4 4 GLY A 120 GLN A 133 1 14 HELIX 5 5 ASP A 136 GLN A 145 1 10 HELIX 6 6 VAL A 156 TYR A 160 1 5 HELIX 7 7 HIS A 178 HIS A 182 5 5 HELIX 8 8 THR A 188 LYS A 216 1 29 HELIX 9 9 GLY A 224 HIS A 228 5 5 HELIX 10 10 ASN A 230 ARG A 244 1 15 HELIX 11 11 ASN A 253 ALA A 255 5 3 HELIX 12 12 PHE A 256 GLU A 266 1 11 HELIX 13 13 ASN B 31 GLN B 42 1 12 HELIX 14 14 ASN B 53 ILE B 61 1 9 HELIX 15 15 VAL B 69 GLN B 85 1 17 HELIX 16 16 GLY B 120 GLN B 133 1 14 HELIX 17 17 ASP B 136 GLN B 145 1 10 HELIX 18 18 VAL B 156 TYR B 160 1 5 HELIX 19 19 HIS B 178 HIS B 182 5 5 HELIX 20 20 THR B 188 PHE B 215 1 28 HELIX 21 21 GLY B 224 HIS B 228 5 5 HELIX 22 22 ASN B 230 ARG B 244 1 15 HELIX 23 23 ASN B 253 ALA B 255 5 3 HELIX 24 24 PHE B 256 GLU B 266 1 11 SHEET 1 A 5 GLN A 21 LEU A 28 0 SHEET 2 A 5 LEU A 11 GLN A 18 -1 N ILE A 12 O GLU A 27 SHEET 3 A 5 LYS A 2 ALA A 7 -1 N GLY A 4 O VAL A 15 SHEET 4 A 5 LYS A 46 THR A 50 1 O LYS A 46 N VAL A 3 SHEET 5 A 5 GLN A 66 ILE A 67 1 O GLN A 66 N LEU A 49 SHEET 1 B 5 GLN A 111 ILE A 117 0 SHEET 2 B 5 THR A 101 PHE A 106 -1 N LEU A 103 O GLY A 115 SHEET 3 B 5 TYR A 92 VAL A 97 -1 N TYR A 92 O PHE A 106 SHEET 4 B 5 ASN A 219 ILE A 223 1 O ILE A 223 N VAL A 97 SHEET 5 B 5 LYS A 247 TYR A 250 1 O TYR A 249 N TYR A 222 SHEET 1 C 2 LEU A 154 LYS A 155 0 SHEET 2 C 2 THR A 172 ALA A 174 -1 O ALA A 174 N LEU A 154 SHEET 1 D 5 GLN B 21 LEU B 28 0 SHEET 2 D 5 LEU B 11 GLN B 18 -1 N ILE B 12 O GLU B 27 SHEET 3 D 5 LYS B 2 ALA B 7 -1 N LYS B 2 O GLU B 17 SHEET 4 D 5 LYS B 46 THR B 50 1 O THR B 50 N ALA B 7 SHEET 5 D 5 GLN B 66 ILE B 67 1 O GLN B 66 N LEU B 49 SHEET 1 E 5 GLN B 111 ILE B 117 0 SHEET 2 E 5 THR B 101 PHE B 106 -1 N LEU B 103 O GLY B 115 SHEET 3 E 5 TYR B 92 VAL B 97 -1 N TYR B 92 O PHE B 106 SHEET 4 E 5 ASN B 219 ILE B 223 1 O VAL B 221 N ILE B 93 SHEET 5 E 5 LYS B 247 TYR B 250 1 O TYR B 249 N TYR B 222 SHEET 1 F 2 LEU B 154 LYS B 155 0 SHEET 2 F 2 THR B 172 ALA B 174 -1 O ALA B 174 N LEU B 154 SITE 1 AC1 19 GLU A 70 PHE A 71 GLY A 98 THR A 99 SITE 2 AC1 19 GLY A 100 THR A 101 SER A 102 ARG A 113 SITE 3 AC1 19 GLY A 116 ILE A 117 ADP A 302 HOH A 412 SITE 4 AC1 19 HOH A 425 HOH A 440 HOH A 495 THR B 172 SITE 5 AC1 19 ALA B 173 GLU B 202 TYR B 240 SITE 1 AC2 21 GLY A 8 GLY A 9 THR A 10 LEU A 11 SITE 2 AC2 21 LYS A 13 LEU A 28 GLY A 98 THR A 99 SITE 3 AC2 21 GLY A 121 GLY A 122 GLN A 125 TYR A 137 SITE 4 AC2 21 GLY A 224 SER A 225 SER A 226 2GH A 301 SITE 5 AC2 21 HOH A 401 HOH A 435 HOH A 440 HOH A 457 SITE 6 AC2 21 HOH A 458 SITE 1 AC3 7 ARG A 113 VAL A 114 GLY A 115 HOH A 495 SITE 2 AC3 7 ARG B 213 ARG B 244 PO4 B 305 SITE 1 AC4 5 ASP A 88 LEU A 89 ALA A 90 ASP A 91 SITE 2 AC4 5 ASN A 219 SITE 1 AC5 19 THR A 172 ALA A 173 GLU A 202 TYR A 240 SITE 2 AC5 19 GLU B 70 PHE B 71 GLY B 98 THR B 99 SITE 3 AC5 19 GLY B 100 THR B 101 SER B 102 ARG B 113 SITE 4 AC5 19 GLY B 116 ILE B 117 ADP B 302 HOH B 404 SITE 5 AC5 19 HOH B 413 HOH B 430 HOH B 442 SITE 1 AC6 19 GLY B 8 GLY B 9 THR B 10 LEU B 11 SITE 2 AC6 19 LYS B 13 GLY B 98 THR B 99 GLY B 121 SITE 3 AC6 19 GLY B 122 GLN B 125 TYR B 137 GLY B 224 SITE 4 AC6 19 SER B 225 SER B 226 2GH B 301 HOH B 412 SITE 5 AC6 19 HOH B 413 HOH B 445 HOH B 476 SITE 1 AC7 5 HIS B 228 ASN B 229 ARG B 234 TYR B 250 SITE 2 AC7 5 PO4 B 311 SITE 1 AC8 3 ARG A 112 ARG B 213 ARG B 244 SITE 1 AC9 3 PO4 A 303 PRO B 168 HOH B 457 SITE 1 BC1 3 HIS B 228 ASN B 229 PO4 B 303 SITE 1 BC2 3 THR B 26 HIS B 228 PHE B 256 CRYST1 141.960 56.130 68.420 90.00 101.17 90.00 C 1 2 1 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.007044 0.000000 0.001390 0.00000 SCALE2 0.000000 0.017816 0.000000 0.00000 SCALE3 0.000000 0.000000 0.014898 0.00000