HEADER SIGNALING PROTEIN 14-AUG-13 4M8Z TITLE CRYSTAL STRUCTURE OF SFH3, A PHOSPHATIDYLINOSITOL TRANSFER PROTEIN TITLE 2 THAT INTEGRATES PHOSPHOINOSITIDE SIGNALING WITH LIPID DROPLET TITLE 3 METABOLISM COMPND MOL_ID: 1; COMPND 2 MOLECULE: PHOSPHATIDYLINOSITOL TRANSFER PROTEIN PDR16; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: PITP, PLEIOTROPIC DRUG RESISTANCE PROTEIN 16, SEC14 HOMOLOG COMPND 5 3; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SACCHAROMYCES CEREVISIAE S288C; SOURCE 3 ORGANISM_COMMON: BAKER'S YEAST; SOURCE 4 ORGANISM_TAXID: 559292; SOURCE 5 STRAIN: ATCC 204508 / S288C; SOURCE 6 GENE: N1158, NP_014168.1. NM_001183069.1, PDR16, SFH3, YNL231C; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PGEM_SFH3 KEYWDS LIPID DROPLETS, PHOSPHOINOSITIDES, MEIOSIS, CRAL TRIO, SEC14, KEYWDS 2 PHOSPHOLIPID SIGNALING, SIGNALING PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR E.O.ORTLUND,M.C.PATHAK REVDAT 5 17-JUL-19 4M8Z 1 REMARK LINK REVDAT 4 15-NOV-17 4M8Z 1 REMARK REVDAT 3 24-SEP-14 4M8Z 1 JRNL REVDAT 2 17-SEP-14 4M8Z 1 JRNL REVDAT 1 10-SEP-14 4M8Z 0 JRNL AUTH J.REN,C.PEI-CHEN LIN,M.C.PATHAK,B.R.TEMPLE,A.H.NILE, JRNL AUTH 2 C.J.MOUSLEY,M.C.DUNCAN,D.M.ECKERT,T.J.LEIKER,P.T.IVANOVA, JRNL AUTH 3 D.S.MYERS,R.C.MURPHY,H.A.BROWN,J.VERDAASDONK,K.S.BLOOM, JRNL AUTH 4 E.A.ORTLUND,A.M.NEIMAN,V.A.BANKAITIS JRNL TITL A PHOSPHATIDYLINOSITOL TRANSFER PROTEIN INTEGRATES JRNL TITL 2 PHOSPHOINOSITIDE SIGNALING WITH LIPID DROPLET METABOLISM TO JRNL TITL 3 REGULATE A DEVELOPMENTAL PROGRAM OF NUTRIENT STRESS-INDUCED JRNL TITL 4 MEMBRANE BIOGENESIS. JRNL REF MOL BIOL CELL V. 25 712 2014 JRNL REFN ISSN 1059-1524 JRNL PMID 24403601 JRNL DOI 10.1091/MBC.E13-11-0634 REMARK 2 REMARK 2 RESOLUTION. 1.93 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX DEV_1423 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.93 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 28.43 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 43.720 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.1 REMARK 3 NUMBER OF REFLECTIONS : 126276 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.219 REMARK 3 R VALUE (WORKING SET) : 0.218 REMARK 3 FREE R VALUE : 0.251 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 3.000 REMARK 3 FREE R VALUE TEST SET COUNT : 3788 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 28.4301 - 5.7681 0.98 4477 134 0.2188 0.2619 REMARK 3 2 5.7681 - 4.5845 0.99 4576 144 0.2043 0.1761 REMARK 3 3 4.5845 - 4.0068 0.99 4509 139 0.1939 0.2164 REMARK 3 4 4.0068 - 3.6413 0.98 4513 135 0.1995 0.2342 REMARK 3 5 3.6413 - 3.3807 0.99 4488 140 0.2021 0.2195 REMARK 3 6 3.3807 - 3.1817 0.99 4553 135 0.2187 0.2728 REMARK 3 7 3.1817 - 3.0225 0.99 4550 140 0.2195 0.2592 REMARK 3 8 3.0225 - 2.8911 1.00 4564 139 0.2249 0.2736 REMARK 3 9 2.8911 - 2.7799 1.00 4544 139 0.2291 0.3128 REMARK 3 10 2.7799 - 2.6841 0.99 4570 142 0.2255 0.2774 REMARK 3 11 2.6841 - 2.6002 0.99 4543 146 0.2344 0.2488 REMARK 3 12 2.6002 - 2.5259 0.99 4536 137 0.2248 0.2902 REMARK 3 13 2.5259 - 2.4594 0.99 4597 146 0.2131 0.2355 REMARK 3 14 2.4594 - 2.3995 1.00 4502 140 0.2070 0.1837 REMARK 3 15 2.3995 - 2.3450 1.00 4611 143 0.2134 0.2562 REMARK 3 16 2.3450 - 2.2951 1.00 4479 141 0.2161 0.2425 REMARK 3 17 2.2951 - 2.2492 0.99 4623 142 0.2162 0.2469 REMARK 3 18 2.2492 - 2.2068 0.99 4478 139 0.2186 0.2668 REMARK 3 19 2.2068 - 2.1674 1.00 4589 137 0.2137 0.2756 REMARK 3 20 2.1674 - 2.1306 1.00 4594 143 0.2187 0.2650 REMARK 3 21 2.1306 - 2.0963 1.00 4516 145 0.2275 0.2460 REMARK 3 22 2.0963 - 2.0640 0.99 4592 146 0.2241 0.2841 REMARK 3 23 2.0640 - 2.0337 1.00 4558 144 0.2447 0.2807 REMARK 3 24 2.0337 - 2.0050 1.00 4532 134 0.2519 0.3463 REMARK 3 25 2.0050 - 1.9780 1.00 4584 147 0.2549 0.2965 REMARK 3 26 1.9780 - 1.9523 1.00 4557 140 0.2599 0.3308 REMARK 3 27 1.9523 - 1.9279 0.93 4253 131 0.2562 0.2650 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.210 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 29.470 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 23.84 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.24000 REMARK 3 B22 (A**2) : 0.39000 REMARK 3 B33 (A**2) : -0.15000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.009 5447 REMARK 3 ANGLE : 1.134 7375 REMARK 3 CHIRALITY : 0.090 799 REMARK 3 PLANARITY : 0.005 941 REMARK 3 DIHEDRAL : 13.348 2079 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : 1 REMARK 3 NCS GROUP : 1 REMARK 3 NCS OPERATOR : 1 REMARK 3 REFERENCE SELECTION: A REMARK 3 SELECTION : B REMARK 3 ATOM PAIRS NUMBER : 20681 REMARK 3 RMSD : 0.08 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 4M8Z COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 30-AUG-13. REMARK 100 THE DEPOSITION ID IS D_1000081616. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 08-NOV-08 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.6 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 22-BM REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97820 REMARK 200 MONOCHROMATOR : SI 111 CHANNEL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 225 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 66699 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.930 REMARK 200 RESOLUTION RANGE LOW (A) : 89.890 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 5.100 REMARK 200 R MERGE (I) : 0.07300 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 10.8000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.93 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.00 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.9 REMARK 200 DATA REDUNDANCY IN SHELL : 5.00 REMARK 200 R MERGE FOR SHELL (I) : 0.28300 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: SGXPRO REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 53.71 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.66 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: THE RESERVOIR SOLUTION CONSISTED OF 15 REMARK 280 - 30% PEG 4000, 5% GLYCEROL, 100 MM AMMONIUM SULFATE, 100 MM REMARK 280 AMMONIUM ACETATE PH 5.6. THIN PLATE-LIKE CRYSTALS WERE HARVESTED REMARK 280 3 - 4 DAYS AFTER MIXING 2 UL PROTEIN SOLUTION (5 MG/ML) WITH 2 REMARK 280 UL RESERVOIR SOLUTION., VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 26.26050 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 72.34700 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 57.35800 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 72.34700 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 26.26050 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 57.35800 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1930 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 30850 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -24.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MSE A 1 REMARK 465 PHE A 2 REMARK 465 LYS A 3 REMARK 465 ARG A 4 REMARK 465 PHE A 5 REMARK 465 SER A 6 REMARK 465 LYS A 7 REMARK 465 LYS A 8 REMARK 465 LYS A 9 REMARK 465 GLU A 10 REMARK 465 ALA A 11 REMARK 465 PRO A 12 REMARK 465 GLU A 13 REMARK 465 ASP A 14 REMARK 465 PRO A 15 REMARK 465 LYS A 16 REMARK 465 VAL A 210 REMARK 465 PRO A 211 REMARK 465 GLY A 212 REMARK 465 ASN A 213 REMARK 465 SER A 214 REMARK 465 LYS A 215 REMARK 465 ILE A 216 REMARK 465 PRO A 217 REMARK 465 PRO A 218 REMARK 465 ILE A 219 REMARK 465 SER A 346 REMARK 465 GLU A 347 REMARK 465 SER A 348 REMARK 465 SER A 349 REMARK 465 THR A 350 REMARK 465 VAL A 351 REMARK 465 MSE B 1 REMARK 465 PHE B 2 REMARK 465 LYS B 3 REMARK 465 ARG B 4 REMARK 465 PHE B 5 REMARK 465 SER B 6 REMARK 465 LYS B 7 REMARK 465 LYS B 8 REMARK 465 LYS B 9 REMARK 465 GLU B 10 REMARK 465 ALA B 11 REMARK 465 PRO B 12 REMARK 465 GLU B 13 REMARK 465 ASP B 14 REMARK 465 PRO B 15 REMARK 465 PRO B 211 REMARK 465 GLY B 212 REMARK 465 ASN B 213 REMARK 465 SER B 214 REMARK 465 LYS B 215 REMARK 465 ILE B 216 REMARK 465 PRO B 217 REMARK 465 PRO B 218 REMARK 465 ILE B 219 REMARK 465 GLY B 220 REMARK 465 GLU B 347 REMARK 465 SER B 348 REMARK 465 SER B 349 REMARK 465 THR B 350 REMARK 465 VAL B 351 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS B 16 CG CD CE NZ REMARK 470 SER B 346 OG REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH B 537 O HOH B 551 1.99 REMARK 500 OD1 ASP B 72 O HOH B 633 2.18 REMARK 500 OE2 GLU A 151 NH1 ARG A 155 2.18 REMARK 500 OE1 GLU A 151 O HOH A 480 2.18 REMARK 500 OE1 GLU B 151 O HOH B 418 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 621 O HOH B 463 1655 2.14 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LEU A 148 114.15 -166.89 REMARK 500 LEU B 148 116.80 -167.56 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 VAL A 344 LYS A 345 148.70 REMARK 500 REMARK 500 REMARK: NULL DBREF 4M8Z A 1 351 UNP P53860 PDR16_YEAST 1 351 DBREF 4M8Z B 1 351 UNP P53860 PDR16_YEAST 1 351 SEQRES 1 A 351 MSE PHE LYS ARG PHE SER LYS LYS LYS GLU ALA PRO GLU SEQRES 2 A 351 ASP PRO LYS ASN LEU ILE ASN ILE ASP LYS PRO ILE LYS SEQRES 3 A 351 GLU LEU PRO ALA SER ILE ALA ILE PRO LYS GLU LYS PRO SEQRES 4 A 351 LEU THR GLY GLU GLN GLN LYS MSE TYR ASP GLU VAL LEU SEQRES 5 A 351 LYS HIS PHE SER ASN PRO ASP LEU LYS VAL TYR THR SER SEQRES 6 A 351 GLU LYS ASN LYS SER GLU ASP ASP LEU LYS PRO LEU GLU SEQRES 7 A 351 GLU GLU GLU LYS ALA TRP LEU THR ARG GLU CYS PHE LEU SEQRES 8 A 351 ARG TYR LEU ARG ALA THR LYS TRP VAL LEU LYS ASP CYS SEQRES 9 A 351 ILE ASP ARG ILE THR MSE THR LEU ALA TRP ARG ARG GLU SEQRES 10 A 351 PHE GLY ILE SER HIS LEU GLY GLU GLU HIS GLY ASP LYS SEQRES 11 A 351 ILE THR ALA ASP LEU VAL ALA VAL GLU ASN GLU SER GLY SEQRES 12 A 351 LYS GLN VAL ILE LEU GLY TYR GLU ASN ASP ALA ARG PRO SEQRES 13 A 351 ILE LEU TYR LEU LYS PRO GLY ARG GLN ASN THR LYS THR SEQRES 14 A 351 SER HIS ARG GLN VAL GLN HIS LEU VAL PHE MSE LEU GLU SEQRES 15 A 351 ARG VAL ILE ASP PHE MSE PRO ALA GLY GLN ASP SER LEU SEQRES 16 A 351 ALA LEU LEU ILE ASP PHE LYS ASP TYR PRO ASP VAL PRO SEQRES 17 A 351 LYS VAL PRO GLY ASN SER LYS ILE PRO PRO ILE GLY VAL SEQRES 18 A 351 GLY LYS GLU VAL LEU HIS ILE LEU GLN THR HIS TYR PRO SEQRES 19 A 351 GLU ARG LEU GLY LYS ALA LEU LEU THR ASN ILE PRO TRP SEQRES 20 A 351 LEU ALA TRP THR PHE LEU LYS LEU ILE HIS PRO PHE ILE SEQRES 21 A 351 ASP PRO LEU THR ARG GLU LYS LEU VAL PHE ASP GLU PRO SEQRES 22 A 351 PHE VAL LYS TYR VAL PRO LYS ASN GLU LEU ASP SER LEU SEQRES 23 A 351 TYR GLY GLY ASP LEU LYS PHE LYS TYR ASN HIS ASP VAL SEQRES 24 A 351 TYR TRP PRO ALA LEU VAL GLU THR ALA ARG GLU LYS ARG SEQRES 25 A 351 ASP HIS TYR PHE LYS ARG PHE GLN SER PHE GLY GLY ILE SEQRES 26 A 351 VAL GLY LEU SER GLU VAL ASP LEU ARG GLY THR HIS GLU SEQRES 27 A 351 LYS LEU LEU TYR PRO VAL LYS SER GLU SER SER THR VAL SEQRES 1 B 351 MSE PHE LYS ARG PHE SER LYS LYS LYS GLU ALA PRO GLU SEQRES 2 B 351 ASP PRO LYS ASN LEU ILE ASN ILE ASP LYS PRO ILE LYS SEQRES 3 B 351 GLU LEU PRO ALA SER ILE ALA ILE PRO LYS GLU LYS PRO SEQRES 4 B 351 LEU THR GLY GLU GLN GLN LYS MSE TYR ASP GLU VAL LEU SEQRES 5 B 351 LYS HIS PHE SER ASN PRO ASP LEU LYS VAL TYR THR SER SEQRES 6 B 351 GLU LYS ASN LYS SER GLU ASP ASP LEU LYS PRO LEU GLU SEQRES 7 B 351 GLU GLU GLU LYS ALA TRP LEU THR ARG GLU CYS PHE LEU SEQRES 8 B 351 ARG TYR LEU ARG ALA THR LYS TRP VAL LEU LYS ASP CYS SEQRES 9 B 351 ILE ASP ARG ILE THR MSE THR LEU ALA TRP ARG ARG GLU SEQRES 10 B 351 PHE GLY ILE SER HIS LEU GLY GLU GLU HIS GLY ASP LYS SEQRES 11 B 351 ILE THR ALA ASP LEU VAL ALA VAL GLU ASN GLU SER GLY SEQRES 12 B 351 LYS GLN VAL ILE LEU GLY TYR GLU ASN ASP ALA ARG PRO SEQRES 13 B 351 ILE LEU TYR LEU LYS PRO GLY ARG GLN ASN THR LYS THR SEQRES 14 B 351 SER HIS ARG GLN VAL GLN HIS LEU VAL PHE MSE LEU GLU SEQRES 15 B 351 ARG VAL ILE ASP PHE MSE PRO ALA GLY GLN ASP SER LEU SEQRES 16 B 351 ALA LEU LEU ILE ASP PHE LYS ASP TYR PRO ASP VAL PRO SEQRES 17 B 351 LYS VAL PRO GLY ASN SER LYS ILE PRO PRO ILE GLY VAL SEQRES 18 B 351 GLY LYS GLU VAL LEU HIS ILE LEU GLN THR HIS TYR PRO SEQRES 19 B 351 GLU ARG LEU GLY LYS ALA LEU LEU THR ASN ILE PRO TRP SEQRES 20 B 351 LEU ALA TRP THR PHE LEU LYS LEU ILE HIS PRO PHE ILE SEQRES 21 B 351 ASP PRO LEU THR ARG GLU LYS LEU VAL PHE ASP GLU PRO SEQRES 22 B 351 PHE VAL LYS TYR VAL PRO LYS ASN GLU LEU ASP SER LEU SEQRES 23 B 351 TYR GLY GLY ASP LEU LYS PHE LYS TYR ASN HIS ASP VAL SEQRES 24 B 351 TYR TRP PRO ALA LEU VAL GLU THR ALA ARG GLU LYS ARG SEQRES 25 B 351 ASP HIS TYR PHE LYS ARG PHE GLN SER PHE GLY GLY ILE SEQRES 26 B 351 VAL GLY LEU SER GLU VAL ASP LEU ARG GLY THR HIS GLU SEQRES 27 B 351 LYS LEU LEU TYR PRO VAL LYS SER GLU SER SER THR VAL MODRES 4M8Z MSE A 47 MET SELENOMETHIONINE MODRES 4M8Z MSE A 110 MET SELENOMETHIONINE MODRES 4M8Z MSE A 180 MET SELENOMETHIONINE MODRES 4M8Z MSE A 188 MET SELENOMETHIONINE MODRES 4M8Z MSE B 47 MET SELENOMETHIONINE MODRES 4M8Z MSE B 110 MET SELENOMETHIONINE MODRES 4M8Z MSE B 180 MET SELENOMETHIONINE MODRES 4M8Z MSE B 188 MET SELENOMETHIONINE HET MSE A 47 8 HET MSE A 110 8 HET MSE A 180 8 HET MSE A 188 8 HET MSE B 47 8 HET MSE B 110 8 HET MSE B 180 8 HET MSE B 188 8 HETNAM MSE SELENOMETHIONINE FORMUL 1 MSE 8(C5 H11 N O2 SE) FORMUL 3 HOH *495(H2 O) HELIX 1 1 THR A 41 ASN A 57 1 17 HELIX 2 2 GLU A 78 LEU A 85 1 8 HELIX 3 3 THR A 86 THR A 97 1 12 HELIX 4 4 VAL A 100 GLY A 119 1 20 HELIX 5 5 GLY A 124 GLY A 128 5 5 HELIX 6 6 THR A 132 ALA A 137 1 6 HELIX 7 7 VAL A 138 GLU A 141 5 4 HELIX 8 8 PRO A 162 GLN A 165 5 4 HELIX 9 9 SER A 170 PHE A 187 1 18 HELIX 10 10 VAL A 221 HIS A 232 1 12 HELIX 11 11 PRO A 246 HIS A 257 1 12 HELIX 12 12 PRO A 258 ILE A 260 5 3 HELIX 13 13 ASP A 261 LYS A 267 1 7 HELIX 14 14 PRO A 273 TYR A 277 5 5 HELIX 15 15 PRO A 279 LEU A 283 5 5 HELIX 16 16 ASP A 284 GLY A 288 5 5 HELIX 17 17 ASN A 296 PHE A 322 1 27 HELIX 18 18 SER A 329 ARG A 334 1 6 HELIX 19 19 THR B 41 ASN B 57 1 17 HELIX 20 20 GLU B 78 LEU B 85 1 8 HELIX 21 21 THR B 86 THR B 97 1 12 HELIX 22 22 VAL B 100 GLY B 119 1 20 HELIX 23 23 GLY B 124 GLY B 128 5 5 HELIX 24 24 THR B 132 ALA B 137 1 6 HELIX 25 25 VAL B 138 GLU B 141 5 4 HELIX 26 26 PRO B 162 GLN B 165 5 4 HELIX 27 27 SER B 170 PHE B 187 1 18 HELIX 28 28 GLY B 222 HIS B 232 1 11 HELIX 29 29 PRO B 246 HIS B 257 1 12 HELIX 30 30 PRO B 258 ILE B 260 5 3 HELIX 31 31 ASP B 261 LYS B 267 1 7 HELIX 32 32 PRO B 273 TYR B 277 5 5 HELIX 33 33 PRO B 279 LEU B 283 5 5 HELIX 34 34 ASP B 284 GLY B 288 5 5 HELIX 35 35 ASN B 296 PHE B 322 1 27 HELIX 36 36 SER B 329 ARG B 334 1 6 SHEET 1 A 2 ILE A 19 ILE A 21 0 SHEET 2 A 2 LEU A 291 PHE A 293 1 O LYS A 292 N ILE A 19 SHEET 1 B 2 LYS A 61 TYR A 63 0 SHEET 2 B 2 LEU A 74 PRO A 76 -1 O LYS A 75 N VAL A 62 SHEET 1 C 5 GLN A 145 TYR A 150 0 SHEET 2 C 5 PRO A 156 LEU A 160 -1 O TYR A 159 N VAL A 146 SHEET 3 C 5 LEU A 195 ASP A 200 1 O LEU A 198 N LEU A 160 SHEET 4 C 5 LEU A 237 THR A 243 1 O LEU A 241 N LEU A 197 SHEET 5 C 5 LEU A 268 VAL A 269 1 O VAL A 269 N LEU A 242 SHEET 1 D 2 ILE B 19 ILE B 21 0 SHEET 2 D 2 LEU B 291 PHE B 293 1 O LYS B 292 N ILE B 19 SHEET 1 E 2 LYS B 61 TYR B 63 0 SHEET 2 E 2 LEU B 74 PRO B 76 -1 O LYS B 75 N VAL B 62 SHEET 1 F 5 GLN B 145 TYR B 150 0 SHEET 2 F 5 PRO B 156 LEU B 160 -1 O TYR B 159 N VAL B 146 SHEET 3 F 5 LEU B 195 ASP B 200 1 O LEU B 198 N LEU B 160 SHEET 4 F 5 LEU B 237 THR B 243 1 O LEU B 241 N LEU B 197 SHEET 5 F 5 LEU B 268 VAL B 269 1 O VAL B 269 N LEU B 242 LINK C LYS A 46 N MSE A 47 1555 1555 1.33 LINK C MSE A 47 N TYR A 48 1555 1555 1.33 LINK C THR A 109 N MSE A 110 1555 1555 1.34 LINK C MSE A 110 N THR A 111 1555 1555 1.33 LINK C PHE A 179 N MSE A 180 1555 1555 1.32 LINK C MSE A 180 N LEU A 181 1555 1555 1.34 LINK C PHE A 187 N MSE A 188 1555 1555 1.33 LINK C MSE A 188 N PRO A 189 1555 1555 1.34 LINK C LYS B 46 N MSE B 47 1555 1555 1.32 LINK C MSE B 47 N TYR B 48 1555 1555 1.33 LINK C THR B 109 N MSE B 110 1555 1555 1.34 LINK C MSE B 110 N THR B 111 1555 1555 1.33 LINK C PHE B 179 N MSE B 180 1555 1555 1.32 LINK C MSE B 180 N LEU B 181 1555 1555 1.34 LINK C PHE B 187 N MSE B 188 1555 1555 1.33 LINK C MSE B 188 N PRO B 189 1555 1555 1.34 CRYST1 52.521 114.716 144.694 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.019040 0.000000 0.000000 0.00000 SCALE2 0.000000 0.008717 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006911 0.00000