HEADER PLANT PROTEIN 14-AUG-13 4M9B TITLE CRYSTAL STRUCTURE OF APO ARA H 8 COMPND MOL_ID: 1; COMPND 2 MOLECULE: ARA H 8 ALLERGEN; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ARACHIS HYPOGAEA; SOURCE 3 ORGANISM_COMMON: GOOBER,GROUND-NUT; SOURCE 4 ORGANISM_TAXID: 3818; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PET-A8 KEYWDS BET V 1 LIKE, SMALL MOLECULE CARRIER, PLANT PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR L.R.OFFERMANN,B.K.HURLBURT,K.A.MAJOREK,J.K.MCBRIDE,S.J.MALEKI, AUTHOR 2 M.CHRUSZCZ REVDAT 3 20-SEP-23 4M9B 1 REMARK LINK REVDAT 2 15-JAN-14 4M9B 1 JRNL REVDAT 1 27-NOV-13 4M9B 0 JRNL AUTH B.K.HURLBURT,L.R.OFFERMANN,J.K.MCBRIDE,K.A.MAJOREK, JRNL AUTH 2 S.J.MALEKI,M.CHRUSZCZ JRNL TITL STRUCTURE AND FUNCTION OF THE PEANUT PANALLERGEN ARA H 8. JRNL REF J.BIOL.CHEM. V. 288 36890 2013 JRNL REFN ISSN 0021-9258 JRNL PMID 24253038 JRNL DOI 10.1074/JBC.M113.517797 REMARK 2 REMARK 2 RESOLUTION. 1.60 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.7.0029 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.60 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 29.52 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 3 NUMBER OF REFLECTIONS : 37647 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.182 REMARK 3 R VALUE (WORKING SET) : 0.180 REMARK 3 FREE R VALUE : 0.222 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1994 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.60 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.64 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2779 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.52 REMARK 3 BIN R VALUE (WORKING SET) : 0.2420 REMARK 3 BIN FREE R VALUE SET COUNT : 151 REMARK 3 BIN FREE R VALUE : 0.3150 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2369 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 2 REMARK 3 SOLVENT ATOMS : 351 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 25.50 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 30.74 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.17000 REMARK 3 B22 (A**2) : -0.38000 REMARK 3 B33 (A**2) : 0.24000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -0.31000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.095 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.098 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.074 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 4.280 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.971 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.956 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2454 ; 0.023 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 2396 ; 0.007 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3328 ; 2.126 ; 1.995 REMARK 3 BOND ANGLES OTHERS (DEGREES): 5589 ; 1.271 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 321 ; 6.305 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 93 ;36.701 ;26.559 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 442 ;13.231 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 2 ;16.838 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 381 ; 0.126 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2744 ; 0.013 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 458 ; 0.005 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NCS TYPE: LOCAL REMARK 3 NUMBER OF DIFFERENT NCS PAIRS : 1 REMARK 3 GROUP CHAIN1 RANGE CHAIN2 RANGE COUNT RMS WEIGHT REMARK 3 1 A 2 157 B 2 157 7836 0.20 0.05 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 5 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 2 A 13 REMARK 3 RESIDUE RANGE : A 14 A 36 REMARK 3 RESIDUE RANGE : A 37 A 76 REMARK 3 RESIDUE RANGE : A 77 A 123 REMARK 3 RESIDUE RANGE : A 124 A 157 REMARK 3 ORIGIN FOR THE GROUP (A): 4.6768 13.7411 16.1197 REMARK 3 T TENSOR REMARK 3 T11: 0.0428 T22: 0.1096 REMARK 3 T33: 0.0176 T12: -0.0051 REMARK 3 T13: -0.0117 T23: 0.0090 REMARK 3 L TENSOR REMARK 3 L11: 0.8475 L22: 1.2696 REMARK 3 L33: 1.2218 L12: -0.0576 REMARK 3 L13: 0.8651 L23: 0.5813 REMARK 3 S TENSOR REMARK 3 S11: 0.0054 S12: -0.1301 S13: -0.0111 REMARK 3 S21: -0.0937 S22: -0.0263 S23: 0.0760 REMARK 3 S31: -0.0178 S32: -0.1298 S33: 0.0210 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 5 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 2 B 13 REMARK 3 RESIDUE RANGE : B 14 B 36 REMARK 3 RESIDUE RANGE : B 37 B 76 REMARK 3 RESIDUE RANGE : B 77 B 123 REMARK 3 RESIDUE RANGE : B 124 B 157 REMARK 3 ORIGIN FOR THE GROUP (A): 12.8543 -12.5611 5.2211 REMARK 3 T TENSOR REMARK 3 T11: 0.0568 T22: 0.0865 REMARK 3 T33: 0.0213 T12: -0.0145 REMARK 3 T13: 0.0100 T23: -0.0037 REMARK 3 L TENSOR REMARK 3 L11: 0.4996 L22: 2.3467 REMARK 3 L33: 1.4068 L12: -0.5386 REMARK 3 L13: 0.6999 L23: -0.1846 REMARK 3 S TENSOR REMARK 3 S11: 0.0479 S12: -0.0242 S13: -0.0621 REMARK 3 S21: -0.1624 S22: 0.0633 S23: 0.1409 REMARK 3 S31: -0.0741 S32: -0.0010 S33: -0.1112 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 4M9B COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 09-SEP-13. REMARK 100 THE DEPOSITION ID IS D_1000081628. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 22-JUN-12 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 19-BM REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : .98 REMARK 200 MONOCHROMATOR : SI 111 CHANNEL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 210R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 39702 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.600 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 200 DATA REDUNDANCY : 3.700 REMARK 200 R MERGE (I) : 0.04500 REMARK 200 R SYM (I) : 0.04500 REMARK 200 FOR THE DATA SET : 38.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.60 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.63 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.9 REMARK 200 DATA REDUNDANCY IN SHELL : 3.70 REMARK 200 R MERGE FOR SHELL (I) : 0.69100 REMARK 200 R SYM FOR SHELL (I) : 0.69100 REMARK 200 FOR SHELL : 2.300 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: HKL-3000, MOLREP REMARK 200 STARTING MODEL: PDB ENTRY 1IFV REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 45.56 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.26 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2M MAGNESIUM FORMATE, 20% (W/V) PEG REMARK 280 3350, PH 7.5, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 43.98250 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 MET B 1 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU A 75 CG CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 GLU B 41 CD GLU B 41 OE1 0.094 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 MET B 23 CG - SD - CE ANGL. DEV. = -18.3 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 72 143.30 -174.69 REMARK 500 ALA A 89 -14.72 134.51 REMARK 500 ASN A 108 24.31 97.65 REMARK 500 ASN B 108 24.86 80.84 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 201 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 PRO A 31 O REMARK 620 2 ILE A 34 O 96.1 REMARK 620 3 ASP A 35 O 169.1 74.5 REMARK 620 4 VAL A 37 O 92.7 85.6 92.2 REMARK 620 5 HOH A 340 O 90.8 173.0 98.4 95.3 REMARK 620 6 HOH A 458 O 79.8 96.5 95.5 172.4 83.5 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA B 201 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 PRO B 31 O REMARK 620 2 ILE B 34 O 98.3 REMARK 620 3 ASP B 35 O 171.7 77.4 REMARK 620 4 VAL B 37 O 96.7 85.2 90.0 REMARK 620 5 HOH B 304 O 79.1 101.0 94.8 172.9 REMARK 620 6 HOH B 322 O 98.3 163.1 85.8 95.7 79.4 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NA A 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NA B 201 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4MAP RELATED DB: PDB REMARK 900 RELATED ID: 4M9W RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF ARA H 8 WITH MES BOUND REMARK 900 RELATED ID: 4MA6 RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF APO ARA H 8 WITH EPICATECHIN BOUND DBREF 4M9B A 1 157 UNP Q6VT83 Q6VT83_ARAHY 1 157 DBREF 4M9B B 1 157 UNP Q6VT83 Q6VT83_ARAHY 1 157 SEQRES 1 A 157 MET GLY VAL PHE THR PHE GLU ASP GLU ILE THR SER THR SEQRES 2 A 157 VAL PRO PRO ALA LYS LEU TYR ASN ALA MET LYS ASP ALA SEQRES 3 A 157 ASP SER ILE THR PRO LYS ILE ILE ASP ASP VAL LYS SER SEQRES 4 A 157 VAL GLU ILE VAL GLU GLY ASN GLY GLY PRO GLY THR ILE SEQRES 5 A 157 LYS LYS LEU THR ILE VAL GLU ASP GLY GLU THR LYS PHE SEQRES 6 A 157 ILE LEU HIS LYS VAL GLU SER ILE ASP GLU ALA ASN TYR SEQRES 7 A 157 ALA TYR ASN TYR SER VAL VAL GLY GLY VAL ALA LEU PRO SEQRES 8 A 157 PRO THR ALA GLU LYS ILE THR PHE GLU THR LYS LEU VAL SEQRES 9 A 157 GLU GLY PRO ASN GLY GLY SER ILE GLY LYS LEU THR LEU SEQRES 10 A 157 LYS TYR HIS THR LYS GLY ASP ALA LYS PRO ASP GLU GLU SEQRES 11 A 157 GLU LEU LYS LYS GLY LYS ALA LYS GLY GLU GLY LEU PHE SEQRES 12 A 157 ARG ALA ILE GLU GLY TYR VAL LEU ALA ASN PRO THR GLN SEQRES 13 A 157 TYR SEQRES 1 B 157 MET GLY VAL PHE THR PHE GLU ASP GLU ILE THR SER THR SEQRES 2 B 157 VAL PRO PRO ALA LYS LEU TYR ASN ALA MET LYS ASP ALA SEQRES 3 B 157 ASP SER ILE THR PRO LYS ILE ILE ASP ASP VAL LYS SER SEQRES 4 B 157 VAL GLU ILE VAL GLU GLY ASN GLY GLY PRO GLY THR ILE SEQRES 5 B 157 LYS LYS LEU THR ILE VAL GLU ASP GLY GLU THR LYS PHE SEQRES 6 B 157 ILE LEU HIS LYS VAL GLU SER ILE ASP GLU ALA ASN TYR SEQRES 7 B 157 ALA TYR ASN TYR SER VAL VAL GLY GLY VAL ALA LEU PRO SEQRES 8 B 157 PRO THR ALA GLU LYS ILE THR PHE GLU THR LYS LEU VAL SEQRES 9 B 157 GLU GLY PRO ASN GLY GLY SER ILE GLY LYS LEU THR LEU SEQRES 10 B 157 LYS TYR HIS THR LYS GLY ASP ALA LYS PRO ASP GLU GLU SEQRES 11 B 157 GLU LEU LYS LYS GLY LYS ALA LYS GLY GLU GLY LEU PHE SEQRES 12 B 157 ARG ALA ILE GLU GLY TYR VAL LEU ALA ASN PRO THR GLN SEQRES 13 B 157 TYR HET NA A 201 1 HET NA B 201 1 HETNAM NA SODIUM ION FORMUL 3 NA 2(NA 1+) FORMUL 5 HOH *351(H2 O) HELIX 1 1 PRO A 15 LYS A 24 1 10 HELIX 2 2 ASP A 25 ILE A 34 1 10 HELIX 3 3 GLU A 75 ASN A 77 5 3 HELIX 4 4 ASP A 128 ASN A 153 1 26 HELIX 5 5 PRO A 154 TYR A 157 5 4 HELIX 6 6 PRO B 15 ASP B 25 1 11 HELIX 7 7 ASP B 25 ILE B 34 1 10 HELIX 8 8 GLU B 75 ASN B 77 5 3 HELIX 9 9 PRO B 107 GLY B 109 5 3 HELIX 10 10 ASP B 128 ASN B 153 1 26 SHEET 1 A 7 VAL A 3 SER A 12 0 SHEET 2 A 7 SER A 111 THR A 121 -1 O TYR A 119 N PHE A 4 SHEET 3 A 7 ALA A 94 GLU A 105 -1 N GLU A 100 O THR A 116 SHEET 4 A 7 ALA A 79 GLY A 86 -1 N TYR A 82 O PHE A 99 SHEET 5 A 7 GLU A 62 ASP A 74 -1 N LEU A 67 O VAL A 85 SHEET 6 A 7 ILE A 52 GLU A 59 -1 N LEU A 55 O ILE A 66 SHEET 7 A 7 VAL A 37 GLU A 44 -1 N GLU A 41 O LYS A 54 SHEET 1 B 7 VAL B 3 SER B 12 0 SHEET 2 B 7 SER B 111 THR B 121 -1 O GLY B 113 N ILE B 10 SHEET 3 B 7 ALA B 94 GLU B 105 -1 N THR B 98 O LYS B 118 SHEET 4 B 7 ALA B 79 GLY B 87 -1 N VAL B 84 O ILE B 97 SHEET 5 B 7 GLU B 62 ASP B 74 -1 N SER B 72 O ASN B 81 SHEET 6 B 7 ILE B 52 GLU B 59 -1 N GLU B 59 O GLU B 62 SHEET 7 B 7 VAL B 37 GLU B 44 -1 N GLU B 41 O LYS B 54 LINK O PRO A 31 NA NA A 201 1555 1555 2.42 LINK O ILE A 34 NA NA A 201 1555 1555 2.51 LINK O ASP A 35 NA NA A 201 1555 1555 2.86 LINK O VAL A 37 NA NA A 201 1555 1555 2.41 LINK NA NA A 201 O HOH A 340 1555 1555 2.18 LINK NA NA A 201 O HOH A 458 1555 1555 2.51 LINK O PRO B 31 NA NA B 201 1555 1555 2.25 LINK O ILE B 34 NA NA B 201 1555 1555 2.44 LINK O ASP B 35 NA NA B 201 1555 1555 2.70 LINK O VAL B 37 NA NA B 201 1555 1555 2.37 LINK NA NA B 201 O HOH B 304 1555 1555 2.53 LINK NA NA B 201 O HOH B 322 1555 1555 2.29 SITE 1 AC1 6 PRO A 31 ILE A 34 ASP A 35 VAL A 37 SITE 2 AC1 6 HOH A 340 HOH A 458 SITE 1 AC2 6 PRO B 31 ILE B 34 ASP B 35 VAL B 37 SITE 2 AC2 6 HOH B 304 HOH B 322 CRYST1 40.939 87.965 42.898 90.00 96.78 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.024427 0.000000 0.002904 0.00000 SCALE2 0.000000 0.011368 0.000000 0.00000 SCALE3 0.000000 0.000000 0.023475 0.00000