HEADER PLANT PROTEIN 15-AUG-13 4MA6 TITLE CRYSTAL STRUCTURE OF ARA H 8 WITH EPICATECHIN BOUND COMPND MOL_ID: 1; COMPND 2 MOLECULE: ARA H 8 ALLERGEN; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ARACHIS HYPOGAEA; SOURCE 3 ORGANISM_COMMON: GOOBER,GROUND-NUT; SOURCE 4 ORGANISM_TAXID: 3818; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PET-A8 KEYWDS BET V 1 LIKE, SMALL MOLECULE CARRIER, PLANT PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR L.R.OFFERMANN,B.K.HURLBURT,K.A.MAJOREK,J.K.MCBRIDE,S.J.MALEKI, AUTHOR 2 M.CHRUSZCZ REVDAT 3 20-SEP-23 4MA6 1 REMARK LINK REVDAT 2 15-JAN-14 4MA6 1 JRNL REVDAT 1 27-NOV-13 4MA6 0 JRNL AUTH B.K.HURLBURT,L.R.OFFERMANN,J.K.MCBRIDE,K.A.MAJOREK, JRNL AUTH 2 S.J.MALEKI,M.CHRUSZCZ JRNL TITL STRUCTURE AND FUNCTION OF THE PEANUT PANALLERGEN ARA H 8. JRNL REF J.BIOL.CHEM. V. 288 36890 2013 JRNL REFN ISSN 0021-9258 JRNL PMID 24253038 JRNL DOI 10.1074/JBC.M113.517797 REMARK 2 REMARK 2 RESOLUTION. 2.00 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.7.0029 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.00 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 36.80 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 19365 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.195 REMARK 3 R VALUE (WORKING SET) : 0.192 REMARK 3 FREE R VALUE : 0.248 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1049 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.00 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.05 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1450 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.48 REMARK 3 BIN R VALUE (WORKING SET) : 0.2330 REMARK 3 BIN FREE R VALUE SET COUNT : 66 REMARK 3 BIN FREE R VALUE : 0.2760 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2368 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 23 REMARK 3 SOLVENT ATOMS : 155 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 30.70 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 37.65 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.76000 REMARK 3 B22 (A**2) : -0.20000 REMARK 3 B33 (A**2) : -0.26000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -2.61000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.209 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.184 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.138 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 9.943 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.961 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.937 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2479 ; 0.017 ; 0.020 REMARK 3 BOND LENGTHS OTHERS (A): 2383 ; 0.006 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3365 ; 1.891 ; 2.006 REMARK 3 BOND ANGLES OTHERS (DEGREES): 5555 ; 1.243 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 317 ; 6.296 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 94 ;37.197 ;26.596 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 430 ;16.037 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 2 ;24.019 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 383 ; 0.103 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2766 ; 0.009 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 460 ; 0.006 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NCS TYPE: LOCAL REMARK 3 NUMBER OF DIFFERENT NCS PAIRS : 1 REMARK 3 GROUP CHAIN1 RANGE CHAIN2 RANGE COUNT RMS WEIGHT REMARK 3 1 A 2 157 B 2 157 8228 0.16 0.05 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 10 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 2 A 39 REMARK 3 ORIGIN FOR THE GROUP (A): 3.1787 -5.0108 15.2473 REMARK 3 T TENSOR REMARK 3 T11: 0.1496 T22: 0.2230 REMARK 3 T33: 0.1709 T12: -0.0407 REMARK 3 T13: 0.0759 T23: 0.0162 REMARK 3 L TENSOR REMARK 3 L11: 2.1683 L22: 3.0798 REMARK 3 L33: 2.3057 L12: -0.4954 REMARK 3 L13: 1.9905 L23: 0.6740 REMARK 3 S TENSOR REMARK 3 S11: 0.1015 S12: -0.1267 S13: -0.1542 REMARK 3 S21: -0.1313 S22: -0.0016 S23: 0.1892 REMARK 3 S31: 0.1163 S32: -0.1858 S33: -0.1000 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 40 A 72 REMARK 3 ORIGIN FOR THE GROUP (A): 11.8294 3.2426 24.2111 REMARK 3 T TENSOR REMARK 3 T11: 0.0462 T22: 0.1223 REMARK 3 T33: 0.0742 T12: -0.0143 REMARK 3 T13: 0.0493 T23: -0.0159 REMARK 3 L TENSOR REMARK 3 L11: 10.2986 L22: 4.0656 REMARK 3 L33: 3.8187 L12: 1.1048 REMARK 3 L13: -1.6350 L23: 1.7172 REMARK 3 S TENSOR REMARK 3 S11: -0.1168 S12: 0.3366 S13: -0.3298 REMARK 3 S21: 0.0846 S22: 0.0939 S23: -0.1793 REMARK 3 S31: 0.1454 S32: -0.1926 S33: 0.0229 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 73 A 101 REMARK 3 ORIGIN FOR THE GROUP (A): 2.8203 6.2603 18.1780 REMARK 3 T TENSOR REMARK 3 T11: 0.0792 T22: 0.2397 REMARK 3 T33: 0.1149 T12: -0.0033 REMARK 3 T13: 0.0127 T23: 0.0135 REMARK 3 L TENSOR REMARK 3 L11: 10.5534 L22: 9.1777 REMARK 3 L33: 2.5296 L12: 8.9601 REMARK 3 L13: 3.0764 L23: 3.0089 REMARK 3 S TENSOR REMARK 3 S11: 0.0878 S12: -0.8640 S13: 0.4433 REMARK 3 S21: -0.1730 S22: -0.4726 S23: 0.5009 REMARK 3 S31: -0.0798 S32: -0.0560 S33: 0.3848 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 102 A 139 REMARK 3 ORIGIN FOR THE GROUP (A): 1.0782 5.7089 9.1283 REMARK 3 T TENSOR REMARK 3 T11: 0.0814 T22: 0.1225 REMARK 3 T33: 0.0642 T12: -0.0096 REMARK 3 T13: -0.0250 T23: 0.0047 REMARK 3 L TENSOR REMARK 3 L11: 3.8826 L22: 6.4361 REMARK 3 L33: 2.5519 L12: 1.9236 REMARK 3 L13: 0.5541 L23: -0.0656 REMARK 3 S TENSOR REMARK 3 S11: -0.2282 S12: 0.1518 S13: 0.1713 REMARK 3 S21: -0.4653 S22: 0.0580 S23: 0.1645 REMARK 3 S31: -0.1674 S32: -0.0558 S33: 0.1702 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 140 A 157 REMARK 3 ORIGIN FOR THE GROUP (A): 4.0972 -12.6688 14.2715 REMARK 3 T TENSOR REMARK 3 T11: 0.1195 T22: 0.1003 REMARK 3 T33: 0.1855 T12: 0.0006 REMARK 3 T13: 0.0590 T23: 0.0240 REMARK 3 L TENSOR REMARK 3 L11: 4.8025 L22: 7.4926 REMARK 3 L33: 7.0571 L12: -1.6979 REMARK 3 L13: 2.7909 L23: -6.2293 REMARK 3 S TENSOR REMARK 3 S11: 0.1605 S12: -0.3699 S13: -0.1789 REMARK 3 S21: -0.3544 S22: 0.1637 S23: 0.7646 REMARK 3 S31: 0.5309 S32: -0.3314 S33: -0.3242 REMARK 3 REMARK 3 TLS GROUP : 6 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 2 B 17 REMARK 3 ORIGIN FOR THE GROUP (A): 6.3222 -24.7778 -2.8324 REMARK 3 T TENSOR REMARK 3 T11: 0.2825 T22: 0.2289 REMARK 3 T33: 0.2163 T12: 0.0447 REMARK 3 T13: -0.0909 T23: -0.0093 REMARK 3 L TENSOR REMARK 3 L11: 0.7735 L22: 7.3504 REMARK 3 L33: 2.6739 L12: 1.7308 REMARK 3 L13: 0.2290 L23: 1.2736 REMARK 3 S TENSOR REMARK 3 S11: 0.1292 S12: -0.0087 S13: 0.0000 REMARK 3 S21: -0.6398 S22: -0.2765 S23: 0.4659 REMARK 3 S31: -0.2674 S32: -0.2709 S33: 0.1473 REMARK 3 REMARK 3 TLS GROUP : 7 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 18 B 61 REMARK 3 ORIGIN FOR THE GROUP (A): 19.5043 -22.9122 10.9265 REMARK 3 T TENSOR REMARK 3 T11: 0.1050 T22: 0.1658 REMARK 3 T33: 0.1470 T12: -0.0132 REMARK 3 T13: 0.0860 T23: -0.0413 REMARK 3 L TENSOR REMARK 3 L11: 2.0888 L22: 4.0637 REMARK 3 L33: 1.2469 L12: -1.3293 REMARK 3 L13: 0.3814 L23: -0.0827 REMARK 3 S TENSOR REMARK 3 S11: 0.0212 S12: 0.0489 S13: -0.0331 REMARK 3 S21: 0.1064 S22: -0.0190 S23: -0.0433 REMARK 3 S31: -0.2034 S32: 0.1064 S33: -0.0022 REMARK 3 REMARK 3 TLS GROUP : 8 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 62 B 118 REMARK 3 ORIGIN FOR THE GROUP (A): 13.5379 -28.4913 2.6481 REMARK 3 T TENSOR REMARK 3 T11: 0.1231 T22: 0.1862 REMARK 3 T33: 0.1396 T12: -0.0008 REMARK 3 T13: 0.0278 T23: -0.0089 REMARK 3 L TENSOR REMARK 3 L11: 1.3546 L22: 4.0693 REMARK 3 L33: 3.1764 L12: -1.0573 REMARK 3 L13: 1.5032 L23: -0.6853 REMARK 3 S TENSOR REMARK 3 S11: 0.2033 S12: -0.0019 S13: -0.0111 REMARK 3 S21: -0.6069 S22: -0.0231 S23: 0.2196 REMARK 3 S31: 0.1260 S32: 0.0489 S33: -0.1802 REMARK 3 REMARK 3 TLS GROUP : 9 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 119 B 140 REMARK 3 ORIGIN FOR THE GROUP (A): 3.7585 -37.5742 6.1152 REMARK 3 T TENSOR REMARK 3 T11: 0.1491 T22: 0.1934 REMARK 3 T33: 0.2744 T12: -0.0546 REMARK 3 T13: 0.0020 T23: 0.0416 REMARK 3 L TENSOR REMARK 3 L11: 3.1208 L22: 8.6735 REMARK 3 L33: 7.1763 L12: -2.6666 REMARK 3 L13: -2.0887 L23: -1.8885 REMARK 3 S TENSOR REMARK 3 S11: 0.0311 S12: -0.2603 S13: -0.1540 REMARK 3 S21: 0.2698 S22: 0.5925 S23: 1.0403 REMARK 3 S31: 0.4977 S32: -0.2568 S33: -0.6236 REMARK 3 REMARK 3 TLS GROUP : 10 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 141 B 157 REMARK 3 ORIGIN FOR THE GROUP (A): 11.6735 -12.5531 5.8674 REMARK 3 T TENSOR REMARK 3 T11: 0.2660 T22: 0.2231 REMARK 3 T33: 0.1915 T12: -0.0942 REMARK 3 T13: 0.0751 T23: -0.0020 REMARK 3 L TENSOR REMARK 3 L11: 1.3417 L22: 21.0702 REMARK 3 L33: 11.9594 L12: 4.9036 REMARK 3 L13: 2.3703 L23: 8.3276 REMARK 3 S TENSOR REMARK 3 S11: -0.2888 S12: 0.2195 S13: -0.0782 REMARK 3 S21: -0.4156 S22: 0.2152 S23: -0.2965 REMARK 3 S31: -0.5100 S32: 0.2846 S33: 0.0736 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 4MA6 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 09-SEP-13. REMARK 100 THE DEPOSITION ID IS D_1000081659. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 22-JUN-12 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 19-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.98 REMARK 200 MONOCHROMATOR : SI 111 CHANNEL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 20539 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.000 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 4.100 REMARK 200 R MERGE (I) : 0.05000 REMARK 200 R SYM (I) : 0.05000 REMARK 200 FOR THE DATA SET : 25.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.00 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.03 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.0 REMARK 200 DATA REDUNDANCY IN SHELL : 3.70 REMARK 200 R MERGE FOR SHELL (I) : 0.56600 REMARK 200 R SYM FOR SHELL (I) : 0.56600 REMARK 200 FOR SHELL : 2.250 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: FOURIER SYNTHESIS REMARK 200 SOFTWARE USED: HKL-3000, MOLREP REMARK 200 STARTING MODEL: PDB ENTRY 4M9B REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 45.50 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.26 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M TRIS (8.5), 0.2 M LITHIUM REMARK 280 SULFATE, 30% (W/V) PEG 4000, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 293K, PH 8.5 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 44.47850 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 MET B 1 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS B 24 CD CE NZ REMARK 470 LYS B 114 CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 TYR A 78 63.65 37.82 REMARK 500 ALA A 89 -9.47 -53.29 REMARK 500 PRO A 92 -33.42 -39.15 REMARK 500 LYS B 96 148.26 -170.69 REMARK 500 LYS B 122 -78.83 -58.12 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 201 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 PRO A 31 O REMARK 620 2 ILE A 34 O 89.3 REMARK 620 3 ASP A 35 O 161.7 72.4 REMARK 620 4 VAL A 37 O 89.0 78.1 87.5 REMARK 620 5 HOH A 307 O 83.8 92.0 96.3 167.8 REMARK 620 6 HOH A 354 O 94.9 171.4 103.3 94.4 96.0 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA B 201 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 PRO B 31 O REMARK 620 2 ILE B 34 O 99.6 REMARK 620 3 ASP B 35 O 172.6 74.7 REMARK 620 4 VAL B 37 O 95.8 83.9 88.3 REMARK 620 5 HOH B 307 O 82.1 99.0 94.1 176.6 REMARK 620 6 HOH B 314 O 92.1 167.3 94.0 90.1 87.4 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NA A 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE 28E A 202 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NA B 201 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4M9B RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF APO ARA H 8 REMARK 900 RELATED ID: 4M9W RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF ARA H 8 WITH MES BOUND REMARK 900 RELATED ID: 4MAP RELATED DB: PDB DBREF 4MA6 A 1 157 UNP Q6VT83 Q6VT83_ARAHY 1 157 DBREF 4MA6 B 1 157 UNP Q6VT83 Q6VT83_ARAHY 1 157 SEQRES 1 A 157 MET GLY VAL PHE THR PHE GLU ASP GLU ILE THR SER THR SEQRES 2 A 157 VAL PRO PRO ALA LYS LEU TYR ASN ALA MET LYS ASP ALA SEQRES 3 A 157 ASP SER ILE THR PRO LYS ILE ILE ASP ASP VAL LYS SER SEQRES 4 A 157 VAL GLU ILE VAL GLU GLY ASN GLY GLY PRO GLY THR ILE SEQRES 5 A 157 LYS LYS LEU THR ILE VAL GLU ASP GLY GLU THR LYS PHE SEQRES 6 A 157 ILE LEU HIS LYS VAL GLU SER ILE ASP GLU ALA ASN TYR SEQRES 7 A 157 ALA TYR ASN TYR SER VAL VAL GLY GLY VAL ALA LEU PRO SEQRES 8 A 157 PRO THR ALA GLU LYS ILE THR PHE GLU THR LYS LEU VAL SEQRES 9 A 157 GLU GLY PRO ASN GLY GLY SER ILE GLY LYS LEU THR LEU SEQRES 10 A 157 LYS TYR HIS THR LYS GLY ASP ALA LYS PRO ASP GLU GLU SEQRES 11 A 157 GLU LEU LYS LYS GLY LYS ALA LYS GLY GLU GLY LEU PHE SEQRES 12 A 157 ARG ALA ILE GLU GLY TYR VAL LEU ALA ASN PRO THR GLN SEQRES 13 A 157 TYR SEQRES 1 B 157 MET GLY VAL PHE THR PHE GLU ASP GLU ILE THR SER THR SEQRES 2 B 157 VAL PRO PRO ALA LYS LEU TYR ASN ALA MET LYS ASP ALA SEQRES 3 B 157 ASP SER ILE THR PRO LYS ILE ILE ASP ASP VAL LYS SER SEQRES 4 B 157 VAL GLU ILE VAL GLU GLY ASN GLY GLY PRO GLY THR ILE SEQRES 5 B 157 LYS LYS LEU THR ILE VAL GLU ASP GLY GLU THR LYS PHE SEQRES 6 B 157 ILE LEU HIS LYS VAL GLU SER ILE ASP GLU ALA ASN TYR SEQRES 7 B 157 ALA TYR ASN TYR SER VAL VAL GLY GLY VAL ALA LEU PRO SEQRES 8 B 157 PRO THR ALA GLU LYS ILE THR PHE GLU THR LYS LEU VAL SEQRES 9 B 157 GLU GLY PRO ASN GLY GLY SER ILE GLY LYS LEU THR LEU SEQRES 10 B 157 LYS TYR HIS THR LYS GLY ASP ALA LYS PRO ASP GLU GLU SEQRES 11 B 157 GLU LEU LYS LYS GLY LYS ALA LYS GLY GLU GLY LEU PHE SEQRES 12 B 157 ARG ALA ILE GLU GLY TYR VAL LEU ALA ASN PRO THR GLN SEQRES 13 B 157 TYR HET NA A 201 1 HET 28E A 202 21 HET NA B 201 1 HETNAM NA SODIUM ION HETNAM 28E (2R,3R)-2-(3,4-DIHYDROXYPHENYL)-3,4-DIHYDRO-2H- HETNAM 2 28E CHROMENE-3,5,7-TRIOL HETSYN 28E EPICATECHIN FORMUL 3 NA 2(NA 1+) FORMUL 4 28E C15 H14 O6 FORMUL 6 HOH *155(H2 O) HELIX 1 1 PRO A 15 ASP A 25 1 11 HELIX 2 2 ASP A 25 ILE A 34 1 10 HELIX 3 3 GLU A 75 ASN A 77 5 3 HELIX 4 4 ASP A 128 ASN A 153 1 26 HELIX 5 5 PRO A 154 TYR A 157 5 4 HELIX 6 6 PRO B 15 ASP B 25 1 11 HELIX 7 7 ASP B 25 ILE B 34 1 10 HELIX 8 8 GLU B 75 ASN B 77 5 3 HELIX 9 9 PRO B 107 GLY B 109 5 3 HELIX 10 10 ASP B 128 ASN B 153 1 26 HELIX 11 11 PRO B 154 TYR B 157 5 4 SHEET 1 A 7 VAL A 3 SER A 12 0 SHEET 2 A 7 SER A 111 THR A 121 -1 O TYR A 119 N PHE A 4 SHEET 3 A 7 ALA A 94 GLU A 105 -1 N GLU A 100 O THR A 116 SHEET 4 A 7 ALA A 79 GLY A 87 -1 N VAL A 84 O ILE A 97 SHEET 5 A 7 GLU A 62 ASP A 74 -1 N LEU A 67 O VAL A 85 SHEET 6 A 7 ILE A 52 GLU A 59 -1 N LEU A 55 O ILE A 66 SHEET 7 A 7 VAL A 37 GLU A 44 -1 N GLU A 41 O LYS A 54 SHEET 1 B 7 VAL B 3 SER B 12 0 SHEET 2 B 7 SER B 111 THR B 121 -1 O GLY B 113 N ILE B 10 SHEET 3 B 7 ALA B 94 GLU B 105 -1 N LYS B 102 O LYS B 114 SHEET 4 B 7 ALA B 79 GLY B 87 -1 N VAL B 84 O ILE B 97 SHEET 5 B 7 GLU B 62 ASP B 74 -1 N SER B 72 O ASN B 81 SHEET 6 B 7 ILE B 52 GLU B 59 -1 N ILE B 57 O LYS B 64 SHEET 7 B 7 VAL B 37 GLU B 44 -1 N GLU B 41 O LYS B 54 LINK O PRO A 31 NA NA A 201 1555 1555 2.40 LINK O ILE A 34 NA NA A 201 1555 1555 2.59 LINK O ASP A 35 NA NA A 201 1555 1555 3.11 LINK O VAL A 37 NA NA A 201 1555 1555 2.50 LINK NA NA A 201 O HOH A 307 1555 1555 2.55 LINK NA NA A 201 O HOH A 354 1555 1555 2.29 LINK O PRO B 31 NA NA B 201 1555 1555 2.23 LINK O ILE B 34 NA NA B 201 1555 1555 2.36 LINK O ASP B 35 NA NA B 201 1555 1555 2.75 LINK O VAL B 37 NA NA B 201 1555 1555 2.42 LINK NA NA B 201 O HOH B 307 1555 1555 2.55 LINK NA NA B 201 O HOH B 314 1555 1555 2.32 SITE 1 AC1 6 PRO A 31 ILE A 34 ASP A 35 VAL A 37 SITE 2 AC1 6 HOH A 307 HOH A 354 SITE 1 AC2 12 THR A 30 ILE A 34 LEU A 55 ILE A 57 SITE 2 AC2 12 HIS A 68 TYR A 82 LYS A 138 LEU A 142 SITE 3 AC2 12 HOH A 340 HOH A 341 HOH A 349 HOH A 366 SITE 1 AC3 6 PRO B 31 ILE B 34 ASP B 35 VAL B 37 SITE 2 AC3 6 HOH B 307 HOH B 314 CRYST1 40.647 88.957 42.657 90.00 96.58 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.024602 0.000000 0.002837 0.00000 SCALE2 0.000000 0.011241 0.000000 0.00000 SCALE3 0.000000 0.000000 0.023598 0.00000