HEADER LIGASE 19-AUG-13 4MB0 TITLE CRYSTAL STRUCTURE OF TON1374 COMPND MOL_ID: 1; COMPND 2 MOLECULE: PHOSPHOPANTOTHENATE SYNTHETASE; COMPND 3 CHAIN: A, B, C, D; COMPND 4 SYNONYM: PUTATIVE UNCHARACTERIZED PROTEIN; COMPND 5 EC: 6.3.2.26; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: THERMOCOCCUS ONNURINEUS; SOURCE 3 ORGANISM_TAXID: 523850; SOURCE 4 STRAIN: NA1; SOURCE 5 GENE: TON_1374; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS LIGASE EXPDTA X-RAY DIFFRACTION AUTHOR M.-K.KIM,Y.J.AN,S.-S.CHA REVDAT 2 20-MAR-24 4MB0 1 REMARK REVDAT 1 06-AUG-14 4MB0 0 JRNL AUTH M.-K.KIM,Y.J.AN,S.-S.CHA JRNL TITL THE CRYSTAL STRUCTURE OF A NOVEL PHOSPHOPANTOTHENATE JRNL TITL 2 SYNTHETASE FROM THE HYPERTHERMOPHILIC ARCHAEA, THERMOCOCCUS JRNL TITL 3 ONNURINEUS NA1 JRNL REF BIOCHEM.BIOPHYS.RES.COMMUN. V. 439 533 2013 JRNL REFN ISSN 0006-291X JRNL PMID 24021277 JRNL DOI 10.1016/J.BBRC.2013.09.008 REMARK 2 REMARK 2 RESOLUTION. 1.96 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.7.0032 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.96 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 33.26 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 96.5 REMARK 3 NUMBER OF REFLECTIONS : 80008 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.214 REMARK 3 R VALUE (WORKING SET) : 0.211 REMARK 3 FREE R VALUE : 0.264 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 4231 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.96 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.01 REMARK 3 REFLECTION IN BIN (WORKING SET) : 5323 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 87.66 REMARK 3 BIN R VALUE (WORKING SET) : 0.3590 REMARK 3 BIN FREE R VALUE SET COUNT : 284 REMARK 3 BIN FREE R VALUE : 0.3840 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 8074 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 4 REMARK 3 SOLVENT ATOMS : 269 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 47.48 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.82000 REMARK 3 B22 (A**2) : 2.03000 REMARK 3 B33 (A**2) : -1.31000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 2.26000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.180 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.172 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.144 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 5.213 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.955 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.929 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 8208 ; 0.007 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 8264 ; 0.000 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 11073 ; 0.952 ; 1.988 REMARK 3 BOND ANGLES OTHERS (DEGREES): 18959 ; 0.556 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 1013 ; 8.868 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 377 ;35.021 ;23.183 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 1563 ;19.849 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 93 ;22.287 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 1257 ; 0.066 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 9102 ; 0.016 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 1761 ; 0.002 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS U VALUES: REFINED INDIVIDUALLY REMARK 4 REMARK 4 4MB0 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 27-AUG-13. REMARK 100 THE DEPOSITION ID IS D_1000081688. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 04-APR-13 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : PAL/PLS REMARK 200 BEAMLINE : 5C (4A) REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0000 REMARK 200 MONOCHROMATOR : SI 111 CHANNEL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 84239 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.960 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 4.600 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 96.7 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.96 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.99 REMARK 200 COMPLETENESS FOR SHELL (%) : 89.2 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 52.10 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.57 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.16M MAGNESIUM CHLORIDE HEXAHYDRATE, REMARK 280 0.08M TRIS-HCL, 24%(W/V) POLYETHYLENE GLYCOL 4000, PH 8.5, VAPOR REMARK 280 DIFFUSION, TEMPERATURE 295K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 133.07200 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 30.48200 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 133.07200 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 30.48200 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4090 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 21550 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -31.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4410 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 21470 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -27.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 VAL A 2 REMARK 465 LYS A 3 REMARK 465 ILE A 4 REMARK 465 PRO A 5 REMARK 465 LYS A 6 REMARK 465 SER A 7 REMARK 465 HIS A 8 REMARK 465 MET B 1 REMARK 465 GLN B 259 REMARK 465 LEU B 260 REMARK 465 ASP B 261 REMARK 465 MET C 1 REMARK 465 VAL C 2 REMARK 465 LYS C 3 REMARK 465 ILE C 4 REMARK 465 PRO C 5 REMARK 465 LYS C 6 REMARK 465 SER C 7 REMARK 465 HIS C 8 REMARK 465 MET D 1 REMARK 465 VAL D 2 REMARK 465 LYS D 3 REMARK 465 ILE D 4 REMARK 465 PRO D 5 REMARK 465 LYS D 6 REMARK 465 SER D 7 REMARK 465 HIS D 8 REMARK 465 PRO D 9 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ARG A 143 CG CD NE CZ NH1 NH2 REMARK 470 GLU B 124 CG CD OE1 OE2 REMARK 470 HIS B 141 CG ND1 CD2 CE1 NE2 REMARK 470 ARG B 143 CG CD NE CZ NH1 NH2 REMARK 470 ARG C 143 CG CD NE CZ NH1 NH2 REMARK 470 HIS D 141 CG ND1 CD2 CE1 NE2 REMARK 470 ARG D 143 CG CD NE CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 NH1 ARG C 256 O MET D 191 1.87 REMARK 500 O HOH C 331 O HOH C 337 2.07 REMARK 500 NH1 ARG A 256 O MET B 191 2.14 REMARK 500 O MET C 191 NH1 ARG D 256 2.14 REMARK 500 O LEU C 139 N HIS C 141 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O LEU A 139 O LEU A 139 2554 1.40 REMARK 500 O HOH B 468 O HOH D 451 1554 1.79 REMARK 500 O HOH B 431 O HOH D 430 1554 2.02 REMARK 500 OH TYR C 217 OD1 ASP D 261 4555 2.12 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 122 91.11 -162.80 REMARK 500 LEU A 139 -118.87 -124.19 REMARK 500 GLU A 140 -154.34 -126.80 REMARK 500 ASN B 77 -169.36 -122.11 REMARK 500 VAL B 84 53.53 -141.96 REMARK 500 ASN B 102 96.73 -161.44 REMARK 500 THR B 107 108.63 -179.74 REMARK 500 GLU B 108 -29.57 -39.42 REMARK 500 ASP B 122 91.78 -162.91 REMARK 500 PRO B 137 109.32 -54.31 REMARK 500 HIS B 141 -149.60 -86.86 REMARK 500 ARG B 256 88.12 41.64 REMARK 500 LYS B 257 -43.76 178.85 REMARK 500 ARG C 10 39.81 -143.77 REMARK 500 ASP C 122 92.80 -164.48 REMARK 500 LEU C 139 -100.48 -174.26 REMARK 500 GLU C 140 -42.19 59.75 REMARK 500 HIS C 141 162.52 94.15 REMARK 500 GLU C 142 -67.57 67.59 REMARK 500 ASN D 77 -167.05 -128.64 REMARK 500 GLU D 124 -111.19 -91.27 REMARK 500 ILE D 125 139.53 23.71 REMARK 500 GLU D 140 -126.51 6.29 REMARK 500 GLU D 142 47.06 -142.11 REMARK 500 MET D 214 4.22 -68.84 REMARK 500 ILE D 254 -72.96 -106.54 REMARK 500 ARG D 256 71.28 -65.70 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 PRO A 9 ARG A 10 110.49 REMARK 500 LEU B 139 GLU B 140 -146.71 REMARK 500 GLU B 251 GLY B 252 -149.09 REMARK 500 GLU D 124 ILE D 125 -149.67 REMARK 500 GLU D 140 HIS D 141 34.93 REMARK 500 GLY D 252 GLY D 253 -70.45 REMARK 500 GLY D 253 ILE D 254 -142.65 REMARK 500 TRP D 255 ARG D 256 -85.04 REMARK 500 LEU D 260 ASP D 261 147.56 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: MAIN CHAIN PLANARITY REMARK 500 REMARK 500 THE FOLLOWING RESIDUES HAVE A PSEUDO PLANARITY REMARK 500 TORSION ANGLE, C(I) - CA(I) - N(I+1) - O(I), GREATER REMARK 500 10.0 DEGREES. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 500 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 500 I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI ANGLE REMARK 500 MET A 191 10.04 REMARK 500 ASP B 198 12.14 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ACT D 301 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4MB2 RELATED DB: PDB DBREF 4MB0 A 1 261 UNP B6YXQ1 B6YXQ1_THEON 1 261 DBREF 4MB0 B 1 261 UNP B6YXQ1 B6YXQ1_THEON 1 261 DBREF 4MB0 C 1 261 UNP B6YXQ1 B6YXQ1_THEON 1 261 DBREF 4MB0 D 1 261 UNP B6YXQ1 B6YXQ1_THEON 1 261 SEQRES 1 A 261 MET VAL LYS ILE PRO LYS SER HIS PRO ARG TYR TRP SER SEQRES 2 A 261 LEU TYR TYR ARG GLU LYS ILE ILE GLU GLY MET GLU LYS SEQRES 3 A 261 GLY MET THR ALA LYS ALA GLY LEU ILE ALA HIS GLY ARG SEQRES 4 A 261 GLY GLU ALA PHE ASP TYR LEU ILE GLY GLU ARG THR ILE SEQRES 5 A 261 GLU PRO ALA GLU ARG ALA MET ARG ALA ALA VAL ALA LYS SEQRES 6 A 261 LEU LEU LEU ALA GLU ASN PRO VAL VAL SER VAL ASN GLY SEQRES 7 A 261 ASN VAL ALA ALA LEU VAL PRO LYS GLU THR ILE GLU LEU SEQRES 8 A 261 ALA ARG ALA LEU ASN ALA LYS LEU GLU ILE ASN LEU PHE SEQRES 9 A 261 TYR ARG THR GLU ASP ARG VAL LYS ALA ILE ALA GLU GLU SEQRES 10 A 261 LEU ARG LYS TYR ASP PRO GLU ILE GLU LEU LEU GLY ILE SEQRES 11 A 261 ASN PRO THR LYS ARG ILE PRO GLY LEU GLU HIS GLU ARG SEQRES 12 A 261 GLY LYS VAL ASP GLU ASN GLY ILE TRP LYS ALA ASP VAL SEQRES 13 A 261 VAL VAL VAL PRO LEU GLU ASP GLY ASP ARG THR GLU ALA SEQRES 14 A 261 LEU VAL ARG MET GLY LYS PHE VAL ILE THR ILE ASP LEU SEQRES 15 A 261 ASN PRO LEU SER ARG SER ALA ARG MET ALA ASP ILE THR SEQRES 16 A 261 ILE VAL ASP ASN ILE VAL ARG ALA TYR PRO ARG MET THR SEQRES 17 A 261 GLU LEU ALA ARG GLU MET LYS ASP TYR SER ARG GLY GLU SEQRES 18 A 261 LEU ILE ARG ILE ILE GLU GLU TYR ASP ASN GLY LYS THR SEQRES 19 A 261 LEU ASN ASP VAL LEU LEU HIS ILE ARG ASP ARG LEU THR SEQRES 20 A 261 LYS LEU ALA GLU GLY GLY ILE TRP ARG LYS LYS GLN LEU SEQRES 21 A 261 ASP SEQRES 1 B 261 MET VAL LYS ILE PRO LYS SER HIS PRO ARG TYR TRP SER SEQRES 2 B 261 LEU TYR TYR ARG GLU LYS ILE ILE GLU GLY MET GLU LYS SEQRES 3 B 261 GLY MET THR ALA LYS ALA GLY LEU ILE ALA HIS GLY ARG SEQRES 4 B 261 GLY GLU ALA PHE ASP TYR LEU ILE GLY GLU ARG THR ILE SEQRES 5 B 261 GLU PRO ALA GLU ARG ALA MET ARG ALA ALA VAL ALA LYS SEQRES 6 B 261 LEU LEU LEU ALA GLU ASN PRO VAL VAL SER VAL ASN GLY SEQRES 7 B 261 ASN VAL ALA ALA LEU VAL PRO LYS GLU THR ILE GLU LEU SEQRES 8 B 261 ALA ARG ALA LEU ASN ALA LYS LEU GLU ILE ASN LEU PHE SEQRES 9 B 261 TYR ARG THR GLU ASP ARG VAL LYS ALA ILE ALA GLU GLU SEQRES 10 B 261 LEU ARG LYS TYR ASP PRO GLU ILE GLU LEU LEU GLY ILE SEQRES 11 B 261 ASN PRO THR LYS ARG ILE PRO GLY LEU GLU HIS GLU ARG SEQRES 12 B 261 GLY LYS VAL ASP GLU ASN GLY ILE TRP LYS ALA ASP VAL SEQRES 13 B 261 VAL VAL VAL PRO LEU GLU ASP GLY ASP ARG THR GLU ALA SEQRES 14 B 261 LEU VAL ARG MET GLY LYS PHE VAL ILE THR ILE ASP LEU SEQRES 15 B 261 ASN PRO LEU SER ARG SER ALA ARG MET ALA ASP ILE THR SEQRES 16 B 261 ILE VAL ASP ASN ILE VAL ARG ALA TYR PRO ARG MET THR SEQRES 17 B 261 GLU LEU ALA ARG GLU MET LYS ASP TYR SER ARG GLY GLU SEQRES 18 B 261 LEU ILE ARG ILE ILE GLU GLU TYR ASP ASN GLY LYS THR SEQRES 19 B 261 LEU ASN ASP VAL LEU LEU HIS ILE ARG ASP ARG LEU THR SEQRES 20 B 261 LYS LEU ALA GLU GLY GLY ILE TRP ARG LYS LYS GLN LEU SEQRES 21 B 261 ASP SEQRES 1 C 261 MET VAL LYS ILE PRO LYS SER HIS PRO ARG TYR TRP SER SEQRES 2 C 261 LEU TYR TYR ARG GLU LYS ILE ILE GLU GLY MET GLU LYS SEQRES 3 C 261 GLY MET THR ALA LYS ALA GLY LEU ILE ALA HIS GLY ARG SEQRES 4 C 261 GLY GLU ALA PHE ASP TYR LEU ILE GLY GLU ARG THR ILE SEQRES 5 C 261 GLU PRO ALA GLU ARG ALA MET ARG ALA ALA VAL ALA LYS SEQRES 6 C 261 LEU LEU LEU ALA GLU ASN PRO VAL VAL SER VAL ASN GLY SEQRES 7 C 261 ASN VAL ALA ALA LEU VAL PRO LYS GLU THR ILE GLU LEU SEQRES 8 C 261 ALA ARG ALA LEU ASN ALA LYS LEU GLU ILE ASN LEU PHE SEQRES 9 C 261 TYR ARG THR GLU ASP ARG VAL LYS ALA ILE ALA GLU GLU SEQRES 10 C 261 LEU ARG LYS TYR ASP PRO GLU ILE GLU LEU LEU GLY ILE SEQRES 11 C 261 ASN PRO THR LYS ARG ILE PRO GLY LEU GLU HIS GLU ARG SEQRES 12 C 261 GLY LYS VAL ASP GLU ASN GLY ILE TRP LYS ALA ASP VAL SEQRES 13 C 261 VAL VAL VAL PRO LEU GLU ASP GLY ASP ARG THR GLU ALA SEQRES 14 C 261 LEU VAL ARG MET GLY LYS PHE VAL ILE THR ILE ASP LEU SEQRES 15 C 261 ASN PRO LEU SER ARG SER ALA ARG MET ALA ASP ILE THR SEQRES 16 C 261 ILE VAL ASP ASN ILE VAL ARG ALA TYR PRO ARG MET THR SEQRES 17 C 261 GLU LEU ALA ARG GLU MET LYS ASP TYR SER ARG GLY GLU SEQRES 18 C 261 LEU ILE ARG ILE ILE GLU GLU TYR ASP ASN GLY LYS THR SEQRES 19 C 261 LEU ASN ASP VAL LEU LEU HIS ILE ARG ASP ARG LEU THR SEQRES 20 C 261 LYS LEU ALA GLU GLY GLY ILE TRP ARG LYS LYS GLN LEU SEQRES 21 C 261 ASP SEQRES 1 D 261 MET VAL LYS ILE PRO LYS SER HIS PRO ARG TYR TRP SER SEQRES 2 D 261 LEU TYR TYR ARG GLU LYS ILE ILE GLU GLY MET GLU LYS SEQRES 3 D 261 GLY MET THR ALA LYS ALA GLY LEU ILE ALA HIS GLY ARG SEQRES 4 D 261 GLY GLU ALA PHE ASP TYR LEU ILE GLY GLU ARG THR ILE SEQRES 5 D 261 GLU PRO ALA GLU ARG ALA MET ARG ALA ALA VAL ALA LYS SEQRES 6 D 261 LEU LEU LEU ALA GLU ASN PRO VAL VAL SER VAL ASN GLY SEQRES 7 D 261 ASN VAL ALA ALA LEU VAL PRO LYS GLU THR ILE GLU LEU SEQRES 8 D 261 ALA ARG ALA LEU ASN ALA LYS LEU GLU ILE ASN LEU PHE SEQRES 9 D 261 TYR ARG THR GLU ASP ARG VAL LYS ALA ILE ALA GLU GLU SEQRES 10 D 261 LEU ARG LYS TYR ASP PRO GLU ILE GLU LEU LEU GLY ILE SEQRES 11 D 261 ASN PRO THR LYS ARG ILE PRO GLY LEU GLU HIS GLU ARG SEQRES 12 D 261 GLY LYS VAL ASP GLU ASN GLY ILE TRP LYS ALA ASP VAL SEQRES 13 D 261 VAL VAL VAL PRO LEU GLU ASP GLY ASP ARG THR GLU ALA SEQRES 14 D 261 LEU VAL ARG MET GLY LYS PHE VAL ILE THR ILE ASP LEU SEQRES 15 D 261 ASN PRO LEU SER ARG SER ALA ARG MET ALA ASP ILE THR SEQRES 16 D 261 ILE VAL ASP ASN ILE VAL ARG ALA TYR PRO ARG MET THR SEQRES 17 D 261 GLU LEU ALA ARG GLU MET LYS ASP TYR SER ARG GLY GLU SEQRES 18 D 261 LEU ILE ARG ILE ILE GLU GLU TYR ASP ASN GLY LYS THR SEQRES 19 D 261 LEU ASN ASP VAL LEU LEU HIS ILE ARG ASP ARG LEU THR SEQRES 20 D 261 LYS LEU ALA GLU GLY GLY ILE TRP ARG LYS LYS GLN LEU SEQRES 21 D 261 ASP HET ACT D 301 4 HETNAM ACT ACETATE ION FORMUL 5 ACT C2 H3 O2 1- FORMUL 6 HOH *269(H2 O) HELIX 1 1 ARG A 10 LYS A 26 1 17 HELIX 2 2 ALA A 30 GLY A 48 1 19 HELIX 3 3 ILE A 52 ALA A 69 1 18 HELIX 4 4 ASN A 77 VAL A 84 1 8 HELIX 5 5 VAL A 84 ASN A 96 1 13 HELIX 6 6 THR A 107 LYS A 120 1 14 HELIX 7 7 ASP A 163 MET A 173 1 11 HELIX 8 8 SER A 186 ALA A 192 1 7 HELIX 9 9 ASN A 199 LYS A 215 1 17 HELIX 10 10 SER A 218 TYR A 229 1 12 HELIX 11 11 ASP A 230 GLY A 253 1 24 HELIX 12 12 ARG B 10 LYS B 26 1 17 HELIX 13 13 ALA B 30 GLY B 48 1 19 HELIX 14 14 ILE B 52 ALA B 69 1 18 HELIX 15 15 ASN B 77 VAL B 84 1 8 HELIX 16 16 VAL B 84 ASN B 96 1 13 HELIX 17 17 THR B 107 LYS B 120 1 14 HELIX 18 18 ASP B 163 GLY B 174 1 12 HELIX 19 19 SER B 186 ALA B 192 1 7 HELIX 20 20 ASN B 199 LYS B 215 1 17 HELIX 21 21 SER B 218 GLU B 228 1 11 HELIX 22 22 ASP B 230 ALA B 250 1 21 HELIX 23 23 ARG C 10 LYS C 26 1 17 HELIX 24 24 ALA C 30 GLY C 48 1 19 HELIX 25 25 ILE C 52 ALA C 69 1 18 HELIX 26 26 ASN C 77 VAL C 84 1 8 HELIX 27 27 VAL C 84 LEU C 95 1 12 HELIX 28 28 THR C 107 LYS C 120 1 14 HELIX 29 29 ASP C 163 MET C 173 1 11 HELIX 30 30 SER C 186 ALA C 192 1 7 HELIX 31 31 ASN C 199 LYS C 215 1 17 HELIX 32 32 SER C 218 TYR C 229 1 12 HELIX 33 33 ASP C 230 GLY C 253 1 24 HELIX 34 34 TYR D 11 LYS D 26 1 16 HELIX 35 35 ALA D 30 GLY D 48 1 19 HELIX 36 36 ILE D 52 ALA D 69 1 18 HELIX 37 37 ASN D 77 VAL D 84 1 8 HELIX 38 38 VAL D 84 LEU D 95 1 12 HELIX 39 39 THR D 107 ASP D 122 1 16 HELIX 40 40 ASP D 163 MET D 173 1 11 HELIX 41 41 SER D 186 ALA D 192 1 7 HELIX 42 42 ASN D 199 LYS D 215 1 17 HELIX 43 43 SER D 218 TYR D 229 1 12 HELIX 44 44 ASP D 230 GLU D 251 1 22 SHEET 1 A 5 LYS A 98 ILE A 101 0 SHEET 2 A 5 VAL A 73 VAL A 76 1 N VAL A 74 O LYS A 98 SHEET 3 A 5 VAL A 156 VAL A 158 1 O VAL A 158 N SER A 75 SHEET 4 A 5 PHE A 176 ILE A 180 1 O ILE A 178 N VAL A 157 SHEET 5 A 5 ILE A 194 ILE A 196 1 O ILE A 196 N THR A 179 SHEET 1 B 2 LYS A 134 ARG A 135 0 SHEET 2 B 2 LYS A 145 VAL A 146 -1 O VAL A 146 N LYS A 134 SHEET 1 C 6 LEU B 127 LEU B 128 0 SHEET 2 C 6 LYS B 98 ILE B 101 1 N LEU B 99 O LEU B 128 SHEET 3 C 6 VAL B 73 VAL B 76 1 N VAL B 74 O LYS B 98 SHEET 4 C 6 VAL B 156 PRO B 160 1 O VAL B 158 N SER B 75 SHEET 5 C 6 PHE B 176 ILE B 180 1 O ILE B 178 N VAL B 159 SHEET 6 C 6 ILE B 194 ILE B 196 1 O ILE B 196 N THR B 179 SHEET 1 D 6 LEU C 127 LEU C 128 0 SHEET 2 D 6 LYS C 98 ILE C 101 1 N LEU C 99 O LEU C 128 SHEET 3 D 6 PRO C 72 VAL C 76 1 N VAL C 74 O LYS C 98 SHEET 4 D 6 VAL C 156 VAL C 158 1 O VAL C 158 N VAL C 73 SHEET 5 D 6 PHE C 176 ILE C 180 1 O ILE C 178 N VAL C 157 SHEET 6 D 6 ILE C 194 ILE C 196 1 O ILE C 196 N THR C 179 SHEET 1 E 2 LYS C 134 ARG C 135 0 SHEET 2 E 2 LYS C 145 VAL C 146 -1 O VAL C 146 N LYS C 134 SHEET 1 F 6 LEU D 127 LEU D 128 0 SHEET 2 F 6 LYS D 98 ILE D 101 1 N LEU D 99 O LEU D 128 SHEET 3 F 6 PRO D 72 VAL D 76 1 N VAL D 74 O LYS D 98 SHEET 4 F 6 VAL D 156 PRO D 160 1 O VAL D 158 N VAL D 73 SHEET 5 F 6 PHE D 176 ILE D 180 1 O PHE D 176 N VAL D 157 SHEET 6 F 6 ILE D 194 ILE D 196 1 O ILE D 196 N THR D 179 SHEET 1 G 2 LYS D 134 ARG D 135 0 SHEET 2 G 2 LYS D 145 VAL D 146 -1 O VAL D 146 N LYS D 134 CISPEP 1 GLU B 140 HIS B 141 0 -18.70 CISPEP 2 HIS B 141 GLU B 142 0 3.37 CISPEP 3 ARG B 256 LYS B 257 0 14.57 CISPEP 4 GLY C 138 LEU C 139 0 -7.45 CISPEP 5 HIS D 141 GLU D 142 0 14.93 SITE 1 AC1 4 HIS D 37 GLY D 40 GLU D 41 ASN D 199 CRYST1 266.144 60.964 75.354 90.00 92.38 90.00 C 1 2 1 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.003757 0.000000 0.000156 0.00000 SCALE2 0.000000 0.016403 0.000000 0.00000 SCALE3 0.000000 0.000000 0.013282 0.00000