HEADER OXIDOREDUCTASE 19-AUG-13 4MB8 TITLE EVOLUTIONARY HISTORY AND METABOLIC INSIGHTS OF ANCIENT MAMMALIAN TITLE 2 URICASES COMPND MOL_ID: 1; COMPND 2 MOLECULE: URICASE; COMPND 3 CHAIN: A, B, C, D; COMPND 4 EC: 1.7.3.3; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: UNCLASSIFIED MAMMALIA; SOURCE 3 ORGANISM_TAXID: 1002697; SOURCE 4 GENE: PHYLOGENETICALLY PREDICTED SEQUENCE FOR THE MAMMALIAN URICASE SOURCE 5 ANCESTOR, UOX; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PET-21A KEYWDS URIC ACID OXIDASE, LYSOZOME, OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR E.O.ORTLUND,M.N.MURPHY REVDAT 7 28-FEB-24 4MB8 1 REMARK REVDAT 6 22-MAY-19 4MB8 1 COMPND SOURCE DBREF SEQADV REVDAT 6 2 1 SHEET REVDAT 5 15-NOV-17 4MB8 1 REMARK REVDAT 4 02-JUL-14 4MB8 1 SOURCE REVDAT 3 26-MAR-14 4MB8 1 JRNL REVDAT 2 19-MAR-14 4MB8 1 JRNL REVDAT 1 05-FEB-14 4MB8 0 JRNL AUTH J.T.KRATZER,M.A.LANASPA,M.N.MURPHY,C.CICERCHI,C.L.GRAVES, JRNL AUTH 2 P.A.TIPTON,E.A.ORTLUND,R.J.JOHNSON,E.A.GAUCHER JRNL TITL EVOLUTIONARY HISTORY AND METABOLIC INSIGHTS OF ANCIENT JRNL TITL 2 MAMMALIAN URICASES. JRNL REF PROC.NATL.ACAD.SCI.USA V. 111 3763 2014 JRNL REFN ISSN 0027-8424 JRNL PMID 24550457 JRNL DOI 10.1073/PNAS.1320393111 REMARK 2 REMARK 2 RESOLUTION. 2.40 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX DEV_1458 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.40 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 39.77 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 39.360 REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 63465 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.177 REMARK 3 R VALUE (WORKING SET) : 0.174 REMARK 3 FREE R VALUE : 0.220 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.070 REMARK 3 FREE R VALUE TEST SET COUNT : 3220 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 39.7724 - 6.8170 0.99 2668 131 0.1460 0.1711 REMARK 3 2 6.8170 - 5.4152 1.00 2630 153 0.1959 0.2646 REMARK 3 3 5.4152 - 4.7319 1.00 2637 149 0.1423 0.1751 REMARK 3 4 4.7319 - 4.2998 1.00 2634 142 0.1339 0.1720 REMARK 3 5 4.2998 - 3.9920 1.00 2599 139 0.1508 0.1762 REMARK 3 6 3.9920 - 3.7568 1.00 2640 131 0.1576 0.2034 REMARK 3 7 3.7568 - 3.5688 1.00 2609 153 0.1597 0.2034 REMARK 3 8 3.5688 - 3.4135 1.00 2609 164 0.1696 0.2020 REMARK 3 9 3.4135 - 3.2822 1.00 2600 151 0.1824 0.2395 REMARK 3 10 3.2822 - 3.1689 1.00 2630 118 0.1750 0.2199 REMARK 3 11 3.1689 - 3.0699 1.00 2606 137 0.1901 0.2409 REMARK 3 12 3.0699 - 2.9822 1.00 2599 155 0.1994 0.2641 REMARK 3 13 2.9822 - 2.9037 1.00 2617 146 0.2018 0.2632 REMARK 3 14 2.9037 - 2.8329 1.00 2643 136 0.2131 0.2485 REMARK 3 15 2.8329 - 2.7685 1.00 2575 150 0.1996 0.2534 REMARK 3 16 2.7685 - 2.7096 1.00 2639 123 0.2212 0.3043 REMARK 3 17 2.7096 - 2.6554 1.00 2637 129 0.2252 0.2810 REMARK 3 18 2.6554 - 2.6053 1.00 2599 142 0.2376 0.3368 REMARK 3 19 2.6053 - 2.5588 1.00 2611 129 0.2245 0.2902 REMARK 3 20 2.5588 - 2.5154 1.00 2603 140 0.2304 0.2787 REMARK 3 21 2.5154 - 2.4748 1.00 2615 142 0.2357 0.3132 REMARK 3 22 2.4748 - 2.4368 1.00 2592 121 0.2419 0.3011 REMARK 3 23 2.4368 - 2.4009 1.00 2653 139 0.2475 0.2944 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.270 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 24.520 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 45.61 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 56.03 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.009 9495 REMARK 3 ANGLE : 1.240 12822 REMARK 3 CHIRALITY : 0.051 1420 REMARK 3 PLANARITY : 0.006 1619 REMARK 3 DIHEDRAL : 14.770 3533 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: ALL REMARK 3 ORIGIN FOR THE GROUP (A): 33.4118 -63.8095 -25.8935 REMARK 3 T TENSOR REMARK 3 T11: 0.2051 T22: 0.2434 REMARK 3 T33: 0.1502 T12: -0.0350 REMARK 3 T13: 0.0064 T23: -0.0073 REMARK 3 L TENSOR REMARK 3 L11: 1.4312 L22: 0.7079 REMARK 3 L33: 0.1695 L12: 0.6711 REMARK 3 L13: 0.0690 L23: -0.1215 REMARK 3 S TENSOR REMARK 3 S11: -0.0571 S12: -0.0785 S13: -0.0074 REMARK 3 S21: -0.0877 S22: 0.0369 S23: 0.0073 REMARK 3 S31: 0.0261 S32: -0.0530 S33: -0.0000 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4MB8 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 03-SEP-13. REMARK 100 THE DEPOSITION ID IS D_1000081696. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 12-DEC-11 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 22-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0 REMARK 200 MONOCHROMATOR : SI 111 CHANNEL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : MAR SCANNER 345 MM PLATE REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 63527 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.400 REMARK 200 RESOLUTION RANGE LOW (A) : 40.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 5.200 REMARK 200 R MERGE (I) : 0.09000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 14.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.40 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.49 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 4.70 REMARK 200 R MERGE FOR SHELL (I) : 0.47600 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 58.36 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.95 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 25% MPD, 40 MM MGCL2, AND 50 MM SODIUM REMARK 280 CACODYLATE , PH 6.0, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE REMARK 280 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 61 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+5/6 REMARK 290 6555 X-Y,X,Z+1/6 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 46.29000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 92.58000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 69.43500 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 115.72500 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 23.14500 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 25360 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 42960 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -145.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 ALA A 2 REMARK 465 HIS A 3 REMARK 465 TYR A 4 REMARK 465 HIS A 5 REMARK 465 ASN A 6 REMARK 465 ASP A 7 REMARK 465 TYR A 8 REMARK 465 LYS A 9 REMARK 465 LYS A 10 REMARK 465 ASN A 11 REMARK 465 ASP A 12 REMARK 465 GLU A 13 REMARK 465 LYS A 299 REMARK 465 LEU A 300 REMARK 465 SER A 301 REMARK 465 SER A 302 REMARK 465 ARG A 303 REMARK 465 LEU A 304 REMARK 465 MET B 1 REMARK 465 ALA B 2 REMARK 465 HIS B 3 REMARK 465 TYR B 4 REMARK 465 HIS B 5 REMARK 465 ASN B 6 REMARK 465 ASP B 7 REMARK 465 TYR B 8 REMARK 465 LYS B 9 REMARK 465 LYS B 10 REMARK 465 ASN B 11 REMARK 465 ASP B 12 REMARK 465 GLU B 13 REMARK 465 LEU B 300 REMARK 465 SER B 301 REMARK 465 SER B 302 REMARK 465 ARG B 303 REMARK 465 LEU B 304 REMARK 465 MET C 1 REMARK 465 ALA C 2 REMARK 465 HIS C 3 REMARK 465 TYR C 4 REMARK 465 HIS C 5 REMARK 465 ASN C 6 REMARK 465 ASP C 7 REMARK 465 TYR C 8 REMARK 465 LYS C 9 REMARK 465 LYS C 10 REMARK 465 ASN C 11 REMARK 465 ASP C 12 REMARK 465 GLU C 13 REMARK 465 ARG C 203 REMARK 465 ASP C 204 REMARK 465 SER C 301 REMARK 465 SER C 302 REMARK 465 ARG C 303 REMARK 465 LEU C 304 REMARK 465 MET D 1 REMARK 465 ALA D 2 REMARK 465 HIS D 3 REMARK 465 TYR D 4 REMARK 465 HIS D 5 REMARK 465 ASN D 6 REMARK 465 ASP D 7 REMARK 465 TYR D 8 REMARK 465 LYS D 9 REMARK 465 LYS D 10 REMARK 465 ASN D 11 REMARK 465 ASP D 12 REMARK 465 GLU D 13 REMARK 465 LEU D 304 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH C 456 O HOH C 461 2.05 REMARK 500 NZ LYS D 122 O HOH D 526 2.12 REMARK 500 O HOH A 447 O HOH A 449 2.15 REMARK 500 O LEU C 247 NH2 ARG C 298 2.18 REMARK 500 O LYS C 36 O HOH C 429 2.18 REMARK 500 O LEU D 247 NH2 ARG D 298 2.18 REMARK 500 O ASP B 216 O HOH D 526 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLU A 15 140.67 67.58 REMARK 500 ILE A 84 -67.45 -121.60 REMARK 500 LYS A 85 -62.88 69.67 REMARK 500 HIS A 129 23.79 -153.09 REMARK 500 THR A 166 -167.38 -176.57 REMARK 500 HIS A 200 -73.81 -66.09 REMARK 500 GLN A 201 -171.83 158.98 REMARK 500 ARG A 203 -133.19 13.65 REMARK 500 ASP A 204 42.01 82.19 REMARK 500 PHE A 207 -55.49 63.34 REMARK 500 LYS A 272 -9.91 -56.13 REMARK 500 ASN A 277 -78.70 -97.60 REMARK 500 LYS A 278 98.00 1.30 REMARK 500 GLU A 279 81.93 -152.58 REMARK 500 ILE B 84 -99.36 -111.39 REMARK 500 LYS B 85 -103.61 68.52 REMARK 500 HIS B 129 24.11 -152.25 REMARK 500 THR B 166 -169.27 -175.12 REMARK 500 HIS B 200 -71.25 -64.02 REMARK 500 GLN B 201 147.94 139.98 REMARK 500 LYS B 228 -64.43 -120.70 REMARK 500 GLU B 230 122.15 7.33 REMARK 500 LYS B 278 94.13 -162.53 REMARK 500 HIS C 129 23.00 -151.82 REMARK 500 THR C 166 -169.88 -174.35 REMARK 500 HIS C 200 -73.93 -70.51 REMARK 500 GLN C 201 -16.76 165.62 REMARK 500 SER C 234 130.91 -170.13 REMARK 500 LYS C 272 -9.79 -57.31 REMARK 500 ASN C 277 -81.16 -97.62 REMARK 500 LYS C 278 97.96 13.74 REMARK 500 HIS D 129 23.19 -153.13 REMARK 500 THR D 166 -167.99 -175.78 REMARK 500 HIS D 200 -75.80 -68.66 REMARK 500 GLN D 201 -159.07 159.76 REMARK 500 ARG D 203 -143.99 66.35 REMARK 500 ASP D 204 34.58 71.21 REMARK 500 PHE D 207 -51.25 -28.17 REMARK 500 ASP D 227 -35.16 69.54 REMARK 500 SER D 234 141.29 -171.26 REMARK 500 ASN D 277 -82.62 -96.03 REMARK 500 LYS D 278 98.93 6.13 REMARK 500 LYS D 299 -51.21 -161.07 REMARK 500 SER D 301 156.19 75.13 REMARK 500 SER D 302 -142.94 -168.23 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 ARG B 298 LYS B 299 149.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ACT B 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ACT D 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ACT D 402 DBREF 4MB8 A 1 304 PDB 4MB8 4MB8 1 304 DBREF 4MB8 B 1 304 PDB 4MB8 4MB8 1 304 DBREF 4MB8 C 1 304 PDB 4MB8 4MB8 1 304 DBREF 4MB8 D 1 304 PDB 4MB8 4MB8 1 304 SEQRES 1 A 304 MET ALA HIS TYR HIS ASN ASP TYR LYS LYS ASN ASP GLU SEQRES 2 A 304 VAL GLU PHE VAL ARG THR GLY TYR GLY LYS ASP MET VAL SEQRES 3 A 304 LYS VAL LEU HIS ILE GLN ARG ASP GLY LYS TYR HIS SER SEQRES 4 A 304 ILE LYS GLU VAL ALA THR SER VAL GLN LEU THR LEU SER SEQRES 5 A 304 SER LYS LYS ASP TYR LEU HIS GLY ASP ASN SER ASP ILE SEQRES 6 A 304 ILE PRO THR ASP THR ILE LYS ASN THR VAL HIS VAL LEU SEQRES 7 A 304 ALA LYS PHE LYS GLY ILE LYS SER ILE GLU ALA PHE ALA SEQRES 8 A 304 MET ASN ILE CYS GLU HIS PHE LEU SER SER PHE ASN HIS SEQRES 9 A 304 VAL ILE ARG ALA GLN VAL TYR VAL GLU GLU VAL PRO TRP SEQRES 10 A 304 LYS ARG PHE GLU LYS ASN GLY VAL LYS HIS VAL HIS ALA SEQRES 11 A 304 PHE ILE HIS THR PRO THR GLY THR HIS PHE CYS GLU VAL SEQRES 12 A 304 GLU GLN MET LYS SER GLY PRO PRO VAL ILE HIS SER GLY SEQRES 13 A 304 ILE LYS ASP LEU LYS VAL LEU LYS THR THR GLN SER GLY SEQRES 14 A 304 PHE GLU GLY PHE ILE LYS ASP GLN PHE THR THR LEU PRO SEQRES 15 A 304 GLU VAL LYS ASP ARG CYS PHE ALA THR GLN VAL TYR CYS SEQRES 16 A 304 LYS TRP ARG TYR HIS GLN GLY ARG ASP VAL ASP PHE GLU SEQRES 17 A 304 ALA THR TRP ASP THR VAL ARG ASP ILE VAL LEU LYS LYS SEQRES 18 A 304 PHE ALA GLY PRO TYR ASP LYS GLY GLU TYR SER PRO SER SEQRES 19 A 304 VAL GLN LYS THR LEU TYR ASP ILE GLN VAL LEU SER LEU SEQRES 20 A 304 SER ARG VAL PRO GLU ILE GLU ASP MET GLU ILE SER LEU SEQRES 21 A 304 PRO ASN ILE HIS TYR PHE ASN ILE ASP MET SER LYS MET SEQRES 22 A 304 GLY LEU ILE ASN LYS GLU GLU VAL LEU LEU PRO LEU ASP SEQRES 23 A 304 ASN PRO TYR GLY LYS ILE THR GLY THR VAL LYS ARG LYS SEQRES 24 A 304 LEU SER SER ARG LEU SEQRES 1 B 304 MET ALA HIS TYR HIS ASN ASP TYR LYS LYS ASN ASP GLU SEQRES 2 B 304 VAL GLU PHE VAL ARG THR GLY TYR GLY LYS ASP MET VAL SEQRES 3 B 304 LYS VAL LEU HIS ILE GLN ARG ASP GLY LYS TYR HIS SER SEQRES 4 B 304 ILE LYS GLU VAL ALA THR SER VAL GLN LEU THR LEU SER SEQRES 5 B 304 SER LYS LYS ASP TYR LEU HIS GLY ASP ASN SER ASP ILE SEQRES 6 B 304 ILE PRO THR ASP THR ILE LYS ASN THR VAL HIS VAL LEU SEQRES 7 B 304 ALA LYS PHE LYS GLY ILE LYS SER ILE GLU ALA PHE ALA SEQRES 8 B 304 MET ASN ILE CYS GLU HIS PHE LEU SER SER PHE ASN HIS SEQRES 9 B 304 VAL ILE ARG ALA GLN VAL TYR VAL GLU GLU VAL PRO TRP SEQRES 10 B 304 LYS ARG PHE GLU LYS ASN GLY VAL LYS HIS VAL HIS ALA SEQRES 11 B 304 PHE ILE HIS THR PRO THR GLY THR HIS PHE CYS GLU VAL SEQRES 12 B 304 GLU GLN MET LYS SER GLY PRO PRO VAL ILE HIS SER GLY SEQRES 13 B 304 ILE LYS ASP LEU LYS VAL LEU LYS THR THR GLN SER GLY SEQRES 14 B 304 PHE GLU GLY PHE ILE LYS ASP GLN PHE THR THR LEU PRO SEQRES 15 B 304 GLU VAL LYS ASP ARG CYS PHE ALA THR GLN VAL TYR CYS SEQRES 16 B 304 LYS TRP ARG TYR HIS GLN GLY ARG ASP VAL ASP PHE GLU SEQRES 17 B 304 ALA THR TRP ASP THR VAL ARG ASP ILE VAL LEU LYS LYS SEQRES 18 B 304 PHE ALA GLY PRO TYR ASP LYS GLY GLU TYR SER PRO SER SEQRES 19 B 304 VAL GLN LYS THR LEU TYR ASP ILE GLN VAL LEU SER LEU SEQRES 20 B 304 SER ARG VAL PRO GLU ILE GLU ASP MET GLU ILE SER LEU SEQRES 21 B 304 PRO ASN ILE HIS TYR PHE ASN ILE ASP MET SER LYS MET SEQRES 22 B 304 GLY LEU ILE ASN LYS GLU GLU VAL LEU LEU PRO LEU ASP SEQRES 23 B 304 ASN PRO TYR GLY LYS ILE THR GLY THR VAL LYS ARG LYS SEQRES 24 B 304 LEU SER SER ARG LEU SEQRES 1 C 304 MET ALA HIS TYR HIS ASN ASP TYR LYS LYS ASN ASP GLU SEQRES 2 C 304 VAL GLU PHE VAL ARG THR GLY TYR GLY LYS ASP MET VAL SEQRES 3 C 304 LYS VAL LEU HIS ILE GLN ARG ASP GLY LYS TYR HIS SER SEQRES 4 C 304 ILE LYS GLU VAL ALA THR SER VAL GLN LEU THR LEU SER SEQRES 5 C 304 SER LYS LYS ASP TYR LEU HIS GLY ASP ASN SER ASP ILE SEQRES 6 C 304 ILE PRO THR ASP THR ILE LYS ASN THR VAL HIS VAL LEU SEQRES 7 C 304 ALA LYS PHE LYS GLY ILE LYS SER ILE GLU ALA PHE ALA SEQRES 8 C 304 MET ASN ILE CYS GLU HIS PHE LEU SER SER PHE ASN HIS SEQRES 9 C 304 VAL ILE ARG ALA GLN VAL TYR VAL GLU GLU VAL PRO TRP SEQRES 10 C 304 LYS ARG PHE GLU LYS ASN GLY VAL LYS HIS VAL HIS ALA SEQRES 11 C 304 PHE ILE HIS THR PRO THR GLY THR HIS PHE CYS GLU VAL SEQRES 12 C 304 GLU GLN MET LYS SER GLY PRO PRO VAL ILE HIS SER GLY SEQRES 13 C 304 ILE LYS ASP LEU LYS VAL LEU LYS THR THR GLN SER GLY SEQRES 14 C 304 PHE GLU GLY PHE ILE LYS ASP GLN PHE THR THR LEU PRO SEQRES 15 C 304 GLU VAL LYS ASP ARG CYS PHE ALA THR GLN VAL TYR CYS SEQRES 16 C 304 LYS TRP ARG TYR HIS GLN GLY ARG ASP VAL ASP PHE GLU SEQRES 17 C 304 ALA THR TRP ASP THR VAL ARG ASP ILE VAL LEU LYS LYS SEQRES 18 C 304 PHE ALA GLY PRO TYR ASP LYS GLY GLU TYR SER PRO SER SEQRES 19 C 304 VAL GLN LYS THR LEU TYR ASP ILE GLN VAL LEU SER LEU SEQRES 20 C 304 SER ARG VAL PRO GLU ILE GLU ASP MET GLU ILE SER LEU SEQRES 21 C 304 PRO ASN ILE HIS TYR PHE ASN ILE ASP MET SER LYS MET SEQRES 22 C 304 GLY LEU ILE ASN LYS GLU GLU VAL LEU LEU PRO LEU ASP SEQRES 23 C 304 ASN PRO TYR GLY LYS ILE THR GLY THR VAL LYS ARG LYS SEQRES 24 C 304 LEU SER SER ARG LEU SEQRES 1 D 304 MET ALA HIS TYR HIS ASN ASP TYR LYS LYS ASN ASP GLU SEQRES 2 D 304 VAL GLU PHE VAL ARG THR GLY TYR GLY LYS ASP MET VAL SEQRES 3 D 304 LYS VAL LEU HIS ILE GLN ARG ASP GLY LYS TYR HIS SER SEQRES 4 D 304 ILE LYS GLU VAL ALA THR SER VAL GLN LEU THR LEU SER SEQRES 5 D 304 SER LYS LYS ASP TYR LEU HIS GLY ASP ASN SER ASP ILE SEQRES 6 D 304 ILE PRO THR ASP THR ILE LYS ASN THR VAL HIS VAL LEU SEQRES 7 D 304 ALA LYS PHE LYS GLY ILE LYS SER ILE GLU ALA PHE ALA SEQRES 8 D 304 MET ASN ILE CYS GLU HIS PHE LEU SER SER PHE ASN HIS SEQRES 9 D 304 VAL ILE ARG ALA GLN VAL TYR VAL GLU GLU VAL PRO TRP SEQRES 10 D 304 LYS ARG PHE GLU LYS ASN GLY VAL LYS HIS VAL HIS ALA SEQRES 11 D 304 PHE ILE HIS THR PRO THR GLY THR HIS PHE CYS GLU VAL SEQRES 12 D 304 GLU GLN MET LYS SER GLY PRO PRO VAL ILE HIS SER GLY SEQRES 13 D 304 ILE LYS ASP LEU LYS VAL LEU LYS THR THR GLN SER GLY SEQRES 14 D 304 PHE GLU GLY PHE ILE LYS ASP GLN PHE THR THR LEU PRO SEQRES 15 D 304 GLU VAL LYS ASP ARG CYS PHE ALA THR GLN VAL TYR CYS SEQRES 16 D 304 LYS TRP ARG TYR HIS GLN GLY ARG ASP VAL ASP PHE GLU SEQRES 17 D 304 ALA THR TRP ASP THR VAL ARG ASP ILE VAL LEU LYS LYS SEQRES 18 D 304 PHE ALA GLY PRO TYR ASP LYS GLY GLU TYR SER PRO SER SEQRES 19 D 304 VAL GLN LYS THR LEU TYR ASP ILE GLN VAL LEU SER LEU SEQRES 20 D 304 SER ARG VAL PRO GLU ILE GLU ASP MET GLU ILE SER LEU SEQRES 21 D 304 PRO ASN ILE HIS TYR PHE ASN ILE ASP MET SER LYS MET SEQRES 22 D 304 GLY LEU ILE ASN LYS GLU GLU VAL LEU LEU PRO LEU ASP SEQRES 23 D 304 ASN PRO TYR GLY LYS ILE THR GLY THR VAL LYS ARG LYS SEQRES 24 D 304 LEU SER SER ARG LEU HET ACT B 401 7 HET ACT D 401 4 HET ACT D 402 7 HETNAM ACT ACETATE ION FORMUL 5 ACT 3(C2 H3 O2 1-) FORMUL 8 HOH *248(H2 O) HELIX 1 1 LYS A 54 HIS A 59 1 6 HELIX 2 2 PRO A 67 LYS A 82 1 16 HELIX 3 3 SER A 86 PHE A 102 1 17 HELIX 4 4 PHE A 207 GLY A 224 1 18 HELIX 5 5 SER A 234 VAL A 250 1 17 HELIX 6 6 MET A 270 GLY A 274 5 5 HELIX 7 7 LYS B 54 HIS B 59 1 6 HELIX 8 8 PRO B 67 LYS B 82 1 16 HELIX 9 9 SER B 86 PHE B 102 1 17 HELIX 10 10 ASP B 206 GLY B 224 1 19 HELIX 11 11 SER B 234 VAL B 250 1 17 HELIX 12 12 MET B 270 GLY B 274 5 5 HELIX 13 13 LYS C 54 HIS C 59 1 6 HELIX 14 14 PRO C 67 LYS C 82 1 16 HELIX 15 15 SER C 86 PHE C 102 1 17 HELIX 16 16 ASP C 206 GLY C 224 1 19 HELIX 17 17 SER C 234 VAL C 250 1 17 HELIX 18 18 MET C 270 GLY C 274 5 5 HELIX 19 19 LYS D 54 HIS D 59 1 6 HELIX 20 20 PRO D 67 LYS D 82 1 16 HELIX 21 21 SER D 86 PHE D 102 1 17 HELIX 22 22 ASP D 206 GLY D 224 1 19 HELIX 23 23 SER D 234 VAL D 250 1 17 HELIX 24 24 MET D 270 GLY D 274 5 5 SHEET 1 AA111 PHE A 16 ASP A 34 0 SHEET 2 AA111 TYR A 37 LEU A 51 -1 O LYS A 41 N HIS A 30 SHEET 3 AA111 VAL A 105 GLU A 114 -1 O TYR A 111 N SER A 46 SHEET 4 AA111 THR A 138 MET A 146 -1 O HIS A 139 N GLU A 114 SHEET 5 AA111 PRO A 151 LYS A 164 -1 O HIS A 154 N GLU A 142 SHEET 6 AA111 PHE A 189 TYR A 199 -1 O PHE A 189 N LYS A 164 SHEET 7 AA111 ILE A 253 ASN A 262 -1 O GLU A 257 N LYS A 196 SHEET 8 AA111 TYR A 289 LYS A 297 -1 O ILE A 292 N LEU A 260 SHEET 9 AA111 GLU B 15 ASP B 34 -1 O VAL B 17 N THR A 295 SHEET 10 AA111 VAL D 281 PRO D 284 -1 O LEU D 282 N LEU B 29 SHEET 11 AA111 TYR D 265 ASN D 267 -1 N PHE D 266 O LEU D 283 SHEET 1 AA2 9 TYR C 265 ASN C 267 0 SHEET 2 AA2 9 VAL C 281 PRO C 284 -1 O LEU C 283 N PHE C 266 SHEET 3 AA2 9 TYR A 37 LEU A 51 0 SHEET 4 AA2 9 TYR B 289 LYS B 297 0 SHEET 5 AA2 9 ILE B 253 ASN B 262 -1 N LEU B 260 O ILE B 292 SHEET 6 AA2 9 PHE B 189 TYR B 199 -1 N LYS B 196 O GLU B 257 SHEET 7 AA2 9 PRO B 151 LYS B 164 -1 N ILE B 157 O CYS B 195 SHEET 8 AA2 9 VAL D 125 HIS D 133 -1 O HIS D 133 N LYS B 161 SHEET 9 AA2 9 TRP D 117 LYS D 122 -1 N LYS D 118 O ILE D 132 SHEET 1 AA3 9 TRP D 117 LYS D 122 0 SHEET 2 AA3 9 VAL D 125 HIS D 133 -1 O ILE D 132 N LYS D 118 SHEET 3 AA3 9 PRO B 151 LYS B 164 -1 N LYS B 161 O HIS D 133 SHEET 4 AA3 9 THR B 138 MET B 146 -1 N GLU B 144 O VAL B 152 SHEET 5 AA3 9 VAL B 105 GLU B 114 -1 N VAL B 110 O VAL B 143 SHEET 6 AA3 9 TYR B 37 LEU B 51 -1 N GLN B 48 O GLN B 109 SHEET 7 AA3 9 GLU B 15 ASP B 34 -1 N GLN B 32 O SER B 39 SHEET 8 AA3 9 VAL D 281 PRO D 284 -1 O LEU D 282 N LEU B 29 SHEET 9 AA3 9 TYR D 265 ASN D 267 -1 N PHE D 266 O LEU D 283 SHEET 1 AA4 9 TRP C 117 LYS C 122 0 SHEET 2 AA4 9 VAL C 125 HIS C 133 -1 O ILE C 132 N LYS C 118 SHEET 3 AA4 9 PRO A 151 LYS A 164 -1 N LYS A 161 O HIS C 133 SHEET 4 AA4 9 PHE A 189 TYR A 199 -1 O PHE A 189 N LYS A 164 SHEET 5 AA4 9 ILE A 253 ASN A 262 -1 O GLU A 257 N LYS A 196 SHEET 6 AA4 9 TYR A 289 LYS A 297 -1 O ILE A 292 N LEU A 260 SHEET 7 AA4 9 GLU B 15 ASP B 34 -1 O VAL B 17 N THR A 295 SHEET 8 AA4 9 VAL D 281 PRO D 284 -1 O LEU D 282 N LEU B 29 SHEET 9 AA4 9 TYR D 265 ASN D 267 -1 N PHE D 266 O LEU D 283 SHEET 1 AA5 9 TRP A 117 LYS A 122 0 SHEET 2 AA5 9 VAL A 125 HIS A 133 -1 O ILE A 132 N LYS A 118 SHEET 3 AA5 9 PRO C 151 LYS C 164 -1 O LYS C 161 N HIS A 133 SHEET 4 AA5 9 THR C 138 MET C 146 -1 N GLU C 144 O VAL C 152 SHEET 5 AA5 9 VAL C 105 GLU C 114 -1 N VAL C 110 O VAL C 143 SHEET 6 AA5 9 TYR C 37 LEU C 51 -1 N GLN C 48 O GLN C 109 SHEET 7 AA5 9 PHE C 16 ASP C 34 -1 N TYR C 21 O LEU C 49 SHEET 8 AA5 9 VAL A 281 PRO A 284 -1 N LEU A 282 O LEU C 29 SHEET 9 AA5 9 TYR A 265 ASN A 267 -1 N PHE A 266 O LEU A 283 SHEET 1 AA6 9 TRP A 117 LYS A 122 0 SHEET 2 AA6 9 VAL A 125 HIS A 133 -1 O ILE A 132 N LYS A 118 SHEET 3 AA6 9 PRO C 151 LYS C 164 -1 O LYS C 161 N HIS A 133 SHEET 4 AA6 9 PHE C 189 TYR C 199 -1 O PHE C 189 N LYS C 164 SHEET 5 AA6 9 ILE C 253 ASN C 262 -1 O GLU C 257 N LYS C 196 SHEET 6 AA6 9 TYR C 289 LYS C 297 -1 O ILE C 292 N LEU C 260 SHEET 7 AA6 9 GLU D 15 ASP D 34 -1 O GLY D 20 N THR C 293 SHEET 8 AA6 9 VAL B 281 PRO B 284 -1 N LEU B 282 O LEU D 29 SHEET 9 AA6 9 TYR B 265 ASN B 267 -1 N PHE B 266 O LEU B 283 SHEET 1 AA7 9 TYR B 265 ASN B 267 0 SHEET 2 AA7 9 VAL B 281 PRO B 284 -1 O LEU B 283 N PHE B 266 SHEET 3 AA7 9 GLU D 15 ASP D 34 -1 O LEU D 29 N LEU B 282 SHEET 4 AA7 9 TYR D 37 LEU D 51 -1 O LYS D 41 N HIS D 30 SHEET 5 AA7 9 VAL D 105 GLU D 114 -1 O GLN D 109 N GLN D 48 SHEET 6 AA7 9 THR D 138 MET D 146 -1 O HIS D 139 N GLU D 114 SHEET 7 AA7 9 PRO D 151 LYS D 164 -1 O HIS D 154 N GLU D 142 SHEET 8 AA7 9 VAL B 125 HIS B 133 -1 N HIS B 133 O LYS D 161 SHEET 9 AA7 9 TRP B 117 LYS B 122 -1 N LYS B 118 O ILE B 132 SHEET 1 AA8 9 TRP B 117 LYS B 122 0 SHEET 2 AA8 9 VAL B 125 HIS B 133 -1 O ILE B 132 N LYS B 118 SHEET 3 AA8 9 PRO D 151 LYS D 164 -1 O LYS D 161 N HIS B 133 SHEET 4 AA8 9 PHE D 189 TYR D 199 -1 O PHE D 189 N LYS D 164 SHEET 5 AA8 9 ILE D 253 ASN D 262 -1 O GLU D 257 N LYS D 196 SHEET 6 AA8 9 TYR D 289 LYS D 297 -1 O GLY D 290 N ASN D 262 SHEET 7 AA8 9 PHE C 16 ASP C 34 -1 N GLY C 20 O THR D 293 SHEET 8 AA8 9 VAL A 281 PRO A 284 -1 N LEU A 282 O LEU C 29 SHEET 9 AA8 9 TYR A 265 ASN A 267 -1 N PHE A 266 O LEU A 283 CISPEP 1 LYS A 278 GLU A 279 0 -1.04 CISPEP 2 ASN A 287 PRO A 288 0 -4.85 CISPEP 3 LYS B 278 GLU B 279 0 -1.45 CISPEP 4 ASN B 287 PRO B 288 0 -2.39 CISPEP 5 LYS C 278 GLU C 279 0 1.26 CISPEP 6 ASN C 287 PRO C 288 0 -2.99 CISPEP 7 ARG C 298 LYS C 299 0 20.92 CISPEP 8 LYS C 299 LEU C 300 0 -1.58 CISPEP 9 LYS D 278 GLU D 279 0 2.49 CISPEP 10 ASN D 287 PRO D 288 0 -4.16 SITE 1 AC1 3 SER A 46 GLN A 109 LYS B 291 SITE 1 AC2 4 THR C 68 PHE D 170 ARG D 187 HOH D 555 SITE 1 AC3 1 LYS D 291 CRYST1 143.778 143.778 138.870 90.00 90.00 120.00 P 61 24 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.006955 0.004016 0.000000 0.00000 SCALE2 0.000000 0.008031 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007201 0.00000