HEADER TRANSFERASE/TRANSFERASE INHIBITOR 21-AUG-13 4MCD TITLE HINTRMD IN COMPLEX WITH 5-PHENYLTHIENO[2,3-D]PYRIMIDIN-4(3H)-ONE COMPND MOL_ID: 1; COMPND 2 MOLECULE: TRNA (GUANINE-N(1)-)-METHYLTRANSFERASE; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: M1G-METHYLTRANSFERASE, TRNA [GM37] METHYLTRANSFERASE; COMPND 5 EC: 2.1.1.228; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HAEMOPHILUS INFLUENZAE RD KW20; SOURCE 3 ORGANISM_TAXID: 71421; SOURCE 4 STRAIN: ATCC51907; SOURCE 5 GENE: HI_0202, TRMD; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET SYSTEM KEYWDS TREFOIL, TRMD, SAM, SAH, SINEFUNGIN, HMT, STRUCTURAL GENOMICS, KEYWDS 2 TRANSFERASE-TRANSFERASE INHIBITOR COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR S.LAHIRI REVDAT 3 28-FEB-24 4MCD 1 REMARK REVDAT 2 09-OCT-13 4MCD 1 JRNL REVDAT 1 25-SEP-13 4MCD 0 JRNL AUTH P.J.HILL,A.ABIBI,R.ALBERT,B.ANDREWS,M.M.GAGNON,N.GAO, JRNL AUTH 2 T.GREBE,L.I.HAJEC,J.HUANG,S.LIVCHAK,S.D.LAHIRI,D.C.MCKINNEY, JRNL AUTH 3 J.THRESHER,H.WANG,N.OLIVIER,E.T.BUURMAN JRNL TITL SELECTIVE INHIBITORS OF BACTERIAL T-RNA-(N(1)G37) JRNL TITL 2 METHYLTRANSFERASE (TRMD) THAT DEMONSTRATE NOVEL ORDERING OF JRNL TITL 3 THE LID DOMAIN. JRNL REF J.MED.CHEM. V. 56 7278 2013 JRNL REFN ISSN 0022-2623 JRNL PMID 23981144 JRNL DOI 10.1021/JM400718N REMARK 2 REMARK 2 RESOLUTION. 1.55 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0046 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.55 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 30.12 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 95.4 REMARK 3 NUMBER OF REFLECTIONS : 41769 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.207 REMARK 3 R VALUE (WORKING SET) : 0.205 REMARK 3 FREE R VALUE : 0.235 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 2113 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.55 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.59 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1983 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 65.57 REMARK 3 BIN R VALUE (WORKING SET) : 0.4020 REMARK 3 BIN FREE R VALUE SET COUNT : 99 REMARK 3 BIN FREE R VALUE : 0.4000 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1872 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 16 REMARK 3 SOLVENT ATOMS : 206 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 28.12 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 1.03000 REMARK 3 B22 (A**2) : 1.03000 REMARK 3 B33 (A**2) : -1.55000 REMARK 3 B12 (A**2) : 0.52000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.085 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.086 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.074 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 4.947 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.962 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.948 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 1930 ; 0.011 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): 1332 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 2611 ; 1.251 ; 1.983 REMARK 3 BOND ANGLES OTHERS (DEGREES): 3243 ; 0.849 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 235 ; 5.141 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 86 ;36.948 ;23.721 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 341 ;14.283 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 15 ;16.507 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 285 ; 0.072 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2150 ; 0.005 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 376 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1174 ; 0.746 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 482 ; 0.164 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1888 ; 1.442 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 756 ; 2.178 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 723 ; 3.727 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 3 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 401 A 606 REMARK 3 RESIDUE RANGE : A 301 A 301 REMARK 3 RESIDUE RANGE : A 1 A 246 REMARK 3 ORIGIN FOR THE GROUP (A): 29.0803 69.7257 59.7586 REMARK 3 T TENSOR REMARK 3 T11: 0.0119 T22: 0.0038 REMARK 3 T33: 0.0312 T12: -0.0030 REMARK 3 T13: -0.0017 T23: -0.0037 REMARK 3 L TENSOR REMARK 3 L11: 0.1005 L22: 0.2882 REMARK 3 L33: 0.8929 L12: -0.0975 REMARK 3 L13: 0.1277 L23: -0.4188 REMARK 3 S TENSOR REMARK 3 S11: -0.0176 S12: -0.0075 S13: 0.0097 REMARK 3 S21: 0.0054 S22: 0.0005 S23: -0.0284 REMARK 3 S31: -0.0509 S32: 0.0289 S33: 0.0172 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4MCD COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 28-AUG-13. REMARK 100 THE DEPOSITION ID IS D_1000081734. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 10-FEB-12 REMARK 200 TEMPERATURE (KELVIN) : 140 REMARK 200 PH : 4.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 31-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : NULL REMARK 200 WAVELENGTH OR RANGE (A) : 0.97 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : NULL REMARK 200 INTENSITY-INTEGRATION SOFTWARE : D*TREK REMARK 200 DATA SCALING SOFTWARE : SCALA 3.2.5 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 43053 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.287 REMARK 200 RESOLUTION RANGE LOW (A) : 30.124 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.6 REMARK 200 DATA REDUNDANCY : 10.20 REMARK 200 R MERGE (I) : 0.18600 REMARK 200 R SYM (I) : 0.18600 REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 6.3000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.55 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.63 REMARK 200 COMPLETENESS FOR SHELL (%) : 95.1 REMARK 200 DATA REDUNDANCY IN SHELL : 8.10 REMARK 200 R MERGE FOR SHELL (I) : 0.03200 REMARK 200 R SYM FOR SHELL (I) : 3.22500 REMARK 200 <I/SIGMA(I)> FOR SHELL : 0.200 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: AMORE REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 54.77 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.72 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PROTEIN AT 10 MG/ML IN THE BUFFER: REMARK 280 20MM TRIS PH 8.0, 150 MM NACL, 10% GLYCEROL, 1MM DTT, 1MM EDTA. REMARK 280 MIXED 1:1 WITH WELL SOLUTION CONTAINING: 200 MM CAACETATE, 24% REMARK 280 PEG 400, 100 MM SODIUM ACETATE, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 293K, PH 4.5 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: H 3 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z REMARK 290 3555 -X+Y,-X,Z REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z REMARK 290 6555 -X,-X+Y,-Z REMARK 290 7555 X+2/3,Y+1/3,Z+1/3 REMARK 290 8555 -Y+2/3,X-Y+1/3,Z+1/3 REMARK 290 9555 -X+Y+2/3,-X+1/3,Z+1/3 REMARK 290 10555 Y+2/3,X+1/3,-Z+1/3 REMARK 290 11555 X-Y+2/3,-Y+1/3,-Z+1/3 REMARK 290 12555 -X+2/3,-X+Y+1/3,-Z+1/3 REMARK 290 13555 X+1/3,Y+2/3,Z+2/3 REMARK 290 14555 -Y+1/3,X-Y+2/3,Z+2/3 REMARK 290 15555 -X+Y+1/3,-X+2/3,Z+2/3 REMARK 290 16555 Y+1/3,X+2/3,-Z+2/3 REMARK 290 17555 X-Y+1/3,-Y+2/3,-Z+2/3 REMARK 290 18555 -X+1/3,-X+Y+2/3,-Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 7 1.000000 0.000000 0.000000 46.67250 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 26.94638 REMARK 290 SMTRY3 7 0.000000 0.000000 1.000000 59.63600 REMARK 290 SMTRY1 8 -0.500000 -0.866025 0.000000 46.67250 REMARK 290 SMTRY2 8 0.866025 -0.500000 0.000000 26.94638 REMARK 290 SMTRY3 8 0.000000 0.000000 1.000000 59.63600 REMARK 290 SMTRY1 9 -0.500000 0.866025 0.000000 46.67250 REMARK 290 SMTRY2 9 -0.866025 -0.500000 0.000000 26.94638 REMARK 290 SMTRY3 9 0.000000 0.000000 1.000000 59.63600 REMARK 290 SMTRY1 10 -0.500000 0.866025 0.000000 46.67250 REMARK 290 SMTRY2 10 0.866025 0.500000 0.000000 26.94638 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 59.63600 REMARK 290 SMTRY1 11 1.000000 0.000000 0.000000 46.67250 REMARK 290 SMTRY2 11 0.000000 -1.000000 0.000000 26.94638 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 59.63600 REMARK 290 SMTRY1 12 -0.500000 -0.866025 0.000000 46.67250 REMARK 290 SMTRY2 12 -0.866025 0.500000 0.000000 26.94638 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 59.63600 REMARK 290 SMTRY1 13 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 13 0.000000 1.000000 0.000000 53.89276 REMARK 290 SMTRY3 13 0.000000 0.000000 1.000000 119.27200 REMARK 290 SMTRY1 14 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 14 0.866025 -0.500000 0.000000 53.89276 REMARK 290 SMTRY3 14 0.000000 0.000000 1.000000 119.27200 REMARK 290 SMTRY1 15 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 15 -0.866025 -0.500000 0.000000 53.89276 REMARK 290 SMTRY3 15 0.000000 0.000000 1.000000 119.27200 REMARK 290 SMTRY1 16 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 16 0.866025 0.500000 0.000000 53.89276 REMARK 290 SMTRY3 16 0.000000 0.000000 -1.000000 119.27200 REMARK 290 SMTRY1 17 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 17 0.000000 -1.000000 0.000000 53.89276 REMARK 290 SMTRY3 17 0.000000 0.000000 -1.000000 119.27200 REMARK 290 SMTRY1 18 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 18 -0.866025 0.500000 0.000000 53.89276 REMARK 290 SMTRY3 18 0.000000 0.000000 -1.000000 119.27200 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 7070 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 21110 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -26.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -0.500000 -0.866025 0.000000 93.34500 REMARK 350 BIOMT2 2 -0.866025 0.500000 0.000000 53.89276 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 119.27200 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 470 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 496 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 524 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 161 REMARK 465 LYS A 162 REMARK 465 GLN A 163 REMARK 465 ALA A 164 REMARK 465 SER A 165 REMARK 465 ALA A 166 REMARK 465 GLU A 167 REMARK 465 GLU A 168 REMARK 465 ASP A 169 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OE1 GLU A 185 O HOH A 554 2.08 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 TYR A 115 -137.37 57.10 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE 22L A 301 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4MCB RELATED DB: PDB REMARK 900 RELATED ID: 4MCC RELATED DB: PDB DBREF 4MCD A 1 246 UNP P43912 TRMD_HAEIN 1 246 SEQRES 1 A 246 MET TRP ILE GLY VAL ILE SER LEU PHE PRO GLU MET PHE SEQRES 2 A 246 LYS ALA ILE THR GLU PHE GLY VAL THR GLY ARG ALA VAL SEQRES 3 A 246 LYS HIS ASN LEU LEU LYS VAL GLU CYS TRP ASN PRO ARG SEQRES 4 A 246 ASP PHE THR PHE ASP LYS HIS LYS THR VAL ASP ASP ARG SEQRES 5 A 246 PRO TYR GLY GLY GLY PRO GLY MET LEU MET MET VAL GLN SEQRES 6 A 246 PRO LEU ARG ASP ALA ILE HIS THR ALA LYS ALA ALA ALA SEQRES 7 A 246 GLY GLU GLY ALA LYS VAL ILE TYR LEU SER PRO GLN GLY SEQRES 8 A 246 ARG LYS LEU ASP GLN GLY GLY VAL THR GLU LEU ALA GLN SEQRES 9 A 246 ASN GLN LYS LEU ILE LEU VAL CYS GLY ARG TYR GLU GLY SEQRES 10 A 246 ILE ASP GLU ARG LEU ILE GLN THR GLU ILE ASP GLU GLU SEQRES 11 A 246 TRP SER ILE GLY ASP TYR VAL LEU THR GLY GLY GLU LEU SEQRES 12 A 246 PRO ALA MET THR LEU ILE ASP ALA VAL ALA ARG PHE ILE SEQRES 13 A 246 PRO GLY VAL LEU GLY LYS GLN ALA SER ALA GLU GLU ASP SEQRES 14 A 246 SER PHE ALA ASP GLY LEU LEU ASP CYS PRO HIS TYR THR SEQRES 15 A 246 ARG PRO GLU VAL LEU GLU GLY LEU THR VAL PRO PRO VAL SEQRES 16 A 246 LEU MET SER GLY HIS HIS GLU GLU ILE ARG LYS TRP ARG SEQRES 17 A 246 LEU LYS GLN SER LEU GLN ARG THR TRP LEU ARG ARG PRO SEQRES 18 A 246 GLU LEU LEU GLU GLY LEU ALA LEU THR ASP GLU GLN ARG SEQRES 19 A 246 LYS LEU LEU LYS GLU ALA GLN ALA GLU HIS ASN SER HET 22L A 301 16 HETNAM 22L 5-PHENYLTHIENO[2,3-D]PYRIMIDIN-4(3H)-ONE FORMUL 2 22L C12 H8 N2 O S FORMUL 3 HOH *206(H2 O) HELIX 1 1 PHE A 9 MET A 12 5 4 HELIX 2 2 PHE A 13 GLU A 18 1 6 HELIX 3 3 PHE A 19 HIS A 28 1 10 HELIX 4 4 ASN A 37 THR A 42 5 6 HELIX 5 5 MET A 63 GLY A 79 1 17 HELIX 6 6 ASP A 95 ALA A 103 1 9 HELIX 7 7 ASP A 119 ILE A 127 1 9 HELIX 8 8 GLY A 141 ARG A 154 1 14 HELIX 9 9 PRO A 193 GLY A 199 1 7 HELIX 10 10 HIS A 200 ARG A 220 1 21 HELIX 11 11 ARG A 220 GLY A 226 1 7 HELIX 12 12 THR A 230 ASN A 245 1 16 SHEET 1 A 6 LYS A 32 TRP A 36 0 SHEET 2 A 6 TRP A 2 ILE A 6 1 N ILE A 3 O LYS A 32 SHEET 3 A 6 LYS A 107 VAL A 111 1 O LEU A 108 N GLY A 4 SHEET 4 A 6 LYS A 83 LEU A 87 1 N ILE A 85 O ILE A 109 SHEET 5 A 6 GLU A 129 SER A 132 1 O GLU A 129 N TYR A 86 SHEET 6 A 6 ARG A 92 LYS A 93 1 N ARG A 92 O SER A 132 SHEET 1 B 2 ASP A 50 ASP A 51 0 SHEET 2 B 2 LEU A 61 MET A 62 -1 O LEU A 61 N ASP A 51 SHEET 1 C 2 VAL A 186 LEU A 187 0 SHEET 2 C 2 LEU A 190 THR A 191 -1 O LEU A 190 N LEU A 187 CISPEP 1 ARG A 183 PRO A 184 0 5.32 SITE 1 AC1 10 LEU A 87 SER A 88 SER A 132 ILE A 133 SITE 2 AC1 10 GLY A 134 TYR A 136 LEU A 138 GLY A 140 SITE 3 AC1 10 PRO A 144 HOH A 534 CRYST1 93.345 93.345 178.908 90.00 90.00 120.00 H 3 2 18 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010713 0.006185 0.000000 0.00000 SCALE2 0.000000 0.012370 0.000000 0.00000 SCALE3 0.000000 0.000000 0.005589 0.00000