data_4MD6 # _entry.id 4MD6 # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.399 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 4MD6 pdb_00004md6 10.2210/pdb4md6/pdb RCSB RCSB081762 ? ? WWPDB D_1000081762 ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2014-07-09 2 'Structure model' 1 1 2024-11-20 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Data collection' 2 2 'Structure model' 'Database references' 3 2 'Structure model' 'Derived calculations' 4 2 'Structure model' 'Structure summary' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 2 'Structure model' chem_comp_atom 2 2 'Structure model' chem_comp_bond 3 2 'Structure model' database_2 4 2 'Structure model' pdbx_entry_details 5 2 'Structure model' pdbx_modification_feature 6 2 'Structure model' pdbx_struct_conn_angle 7 2 'Structure model' struct_conn 8 2 'Structure model' struct_site # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 2 'Structure model' '_database_2.pdbx_DOI' 2 2 'Structure model' '_database_2.pdbx_database_accession' 3 2 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_comp_id' 4 2 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_seq_id' 5 2 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_asym_id' 6 2 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_atom_id' 7 2 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_comp_id' 8 2 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_seq_id' 9 2 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_comp_id' 10 2 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_seq_id' 11 2 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_asym_id' 12 2 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_atom_id' 13 2 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_comp_id' 14 2 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_seq_id' 15 2 'Structure model' '_pdbx_struct_conn_angle.value' 16 2 'Structure model' '_struct_conn.pdbx_dist_value' 17 2 'Structure model' '_struct_conn.ptnr1_auth_comp_id' 18 2 'Structure model' '_struct_conn.ptnr1_auth_seq_id' 19 2 'Structure model' '_struct_conn.ptnr1_label_asym_id' 20 2 'Structure model' '_struct_conn.ptnr1_label_atom_id' 21 2 'Structure model' '_struct_conn.ptnr1_label_comp_id' 22 2 'Structure model' '_struct_conn.ptnr1_label_seq_id' 23 2 'Structure model' '_struct_conn.ptnr2_auth_comp_id' 24 2 'Structure model' '_struct_conn.ptnr2_auth_seq_id' 25 2 'Structure model' '_struct_conn.ptnr2_label_asym_id' 26 2 'Structure model' '_struct_conn.ptnr2_label_atom_id' 27 2 'Structure model' '_struct_conn.ptnr2_label_comp_id' 28 2 'Structure model' '_struct_site.pdbx_auth_asym_id' 29 2 'Structure model' '_struct_site.pdbx_auth_comp_id' 30 2 'Structure model' '_struct_site.pdbx_auth_seq_id' # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 4MD6 _pdbx_database_status.recvd_initial_deposition_date 2013-08-22 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_nmr_data ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Cui, W.' 1 'Huang, M.' 2 'Shao, Y.' 3 'Luo, H.' 4 # _citation.id primary _citation.title ;Discovery of 3-(4-hydroxybenzyl)-1-(thiophen-2-yl)chromeno[2,3-c]pyrrol-9(2H)-one as a phosphodiesterase-5 inhibitor and its complex crystal structure. ; _citation.journal_abbrev 'Biochem Pharmacol' _citation.journal_volume 89 _citation.page_first 86 _citation.page_last 98 _citation.year 2014 _citation.journal_id_ASTM ? _citation.country ? _citation.journal_id_ISSN ? _citation.journal_id_CSD 0353 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 24565909 _citation.pdbx_database_id_DOI 10.1016/j.bcp.2014.02.013 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Shang, N.N.' 1 ? primary 'Shao, Y.X.' 2 ? primary 'Cai, Y.H.' 3 ? primary 'Guan, M.' 4 ? primary 'Huang, M.' 5 ? primary 'Cui, W.' 6 ? primary 'He, L.' 7 ? primary 'Yu, Y.J.' 8 ? primary 'Huang, L.' 9 ? primary 'Li, Z.' 10 ? primary 'Bu, X.Z.' 11 ? primary 'Ke, H.' 12 ? primary 'Luo, H.B.' 13 ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man ;cGMP-specific 3',5'-cyclic phosphodiesterase ; 37788.531 1 3.1.4.35 ? 'catalytic domain (UNP residues 535-860)' ? 2 non-polymer syn 'SULFATE ION' 96.063 1 ? ? ? ? 3 non-polymer syn '3-(4-hydroxybenzyl)-1-(thiophen-2-yl)chromeno[2,3-c]pyrrol-9(2H)-one' 373.424 1 ? ? ? ? 4 non-polymer syn 'ZINC ION' 65.409 1 ? ? ? ? 5 non-polymer syn 'MAGNESIUM ION' 24.305 1 ? ? ? ? 6 water nat water 18.015 71 ? ? ? ? # _entity_name_com.entity_id 1 _entity_name_com.name 'cGMP-binding cGMP-specific phosphodiesterase, CGB-PDE' # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;EETRELQSLAAAVVPSAQTLKITDFSFSDFELSDLETALCTIRMFTDLNLVQNFQMKHEVLCRWILSVKKNYRKNVAYHN WRHAFNTAQCMFAALKAGKIQNKLTDLEILALLIAALSHDLDHRGVNNSYIQRSEHPLAQLYCHSIMEHHHFDQCLMILN SPGNQILSGLSIEEYKTTLKIIKQAILATDLALYIKRRGEFFELIRKNQFNLEDPHQKELFLAMLMTACDLSAITKPWPI QQRIAELVATEFFDQGDRERKELNIEPTDLMNREKKNKIPSMQVGFIDAICLQLYEALTHVSEDCFPLLDGCRKNRQKWQ ALAEQQ ; _entity_poly.pdbx_seq_one_letter_code_can ;EETRELQSLAAAVVPSAQTLKITDFSFSDFELSDLETALCTIRMFTDLNLVQNFQMKHEVLCRWILSVKKNYRKNVAYHN WRHAFNTAQCMFAALKAGKIQNKLTDLEILALLIAALSHDLDHRGVNNSYIQRSEHPLAQLYCHSIMEHHHFDQCLMILN SPGNQILSGLSIEEYKTTLKIIKQAILATDLALYIKRRGEFFELIRKNQFNLEDPHQKELFLAMLMTACDLSAITKPWPI QQRIAELVATEFFDQGDRERKELNIEPTDLMNREKKNKIPSMQVGFIDAICLQLYEALTHVSEDCFPLLDGCRKNRQKWQ ALAEQQ ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 'SULFATE ION' SO4 3 '3-(4-hydroxybenzyl)-1-(thiophen-2-yl)chromeno[2,3-c]pyrrol-9(2H)-one' 24E 4 'ZINC ION' ZN 5 'MAGNESIUM ION' MG 6 water HOH # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 GLU n 1 2 GLU n 1 3 THR n 1 4 ARG n 1 5 GLU n 1 6 LEU n 1 7 GLN n 1 8 SER n 1 9 LEU n 1 10 ALA n 1 11 ALA n 1 12 ALA n 1 13 VAL n 1 14 VAL n 1 15 PRO n 1 16 SER n 1 17 ALA n 1 18 GLN n 1 19 THR n 1 20 LEU n 1 21 LYS n 1 22 ILE n 1 23 THR n 1 24 ASP n 1 25 PHE n 1 26 SER n 1 27 PHE n 1 28 SER n 1 29 ASP n 1 30 PHE n 1 31 GLU n 1 32 LEU n 1 33 SER n 1 34 ASP n 1 35 LEU n 1 36 GLU n 1 37 THR n 1 38 ALA n 1 39 LEU n 1 40 CYS n 1 41 THR n 1 42 ILE n 1 43 ARG n 1 44 MET n 1 45 PHE n 1 46 THR n 1 47 ASP n 1 48 LEU n 1 49 ASN n 1 50 LEU n 1 51 VAL n 1 52 GLN n 1 53 ASN n 1 54 PHE n 1 55 GLN n 1 56 MET n 1 57 LYS n 1 58 HIS n 1 59 GLU n 1 60 VAL n 1 61 LEU n 1 62 CYS n 1 63 ARG n 1 64 TRP n 1 65 ILE n 1 66 LEU n 1 67 SER n 1 68 VAL n 1 69 LYS n 1 70 LYS n 1 71 ASN n 1 72 TYR n 1 73 ARG n 1 74 LYS n 1 75 ASN n 1 76 VAL n 1 77 ALA n 1 78 TYR n 1 79 HIS n 1 80 ASN n 1 81 TRP n 1 82 ARG n 1 83 HIS n 1 84 ALA n 1 85 PHE n 1 86 ASN n 1 87 THR n 1 88 ALA n 1 89 GLN n 1 90 CYS n 1 91 MET n 1 92 PHE n 1 93 ALA n 1 94 ALA n 1 95 LEU n 1 96 LYS n 1 97 ALA n 1 98 GLY n 1 99 LYS n 1 100 ILE n 1 101 GLN n 1 102 ASN n 1 103 LYS n 1 104 LEU n 1 105 THR n 1 106 ASP n 1 107 LEU n 1 108 GLU n 1 109 ILE n 1 110 LEU n 1 111 ALA n 1 112 LEU n 1 113 LEU n 1 114 ILE n 1 115 ALA n 1 116 ALA n 1 117 LEU n 1 118 SER n 1 119 HIS n 1 120 ASP n 1 121 LEU n 1 122 ASP n 1 123 HIS n 1 124 ARG n 1 125 GLY n 1 126 VAL n 1 127 ASN n 1 128 ASN n 1 129 SER n 1 130 TYR n 1 131 ILE n 1 132 GLN n 1 133 ARG n 1 134 SER n 1 135 GLU n 1 136 HIS n 1 137 PRO n 1 138 LEU n 1 139 ALA n 1 140 GLN n 1 141 LEU n 1 142 TYR n 1 143 CYS n 1 144 HIS n 1 145 SER n 1 146 ILE n 1 147 MET n 1 148 GLU n 1 149 HIS n 1 150 HIS n 1 151 HIS n 1 152 PHE n 1 153 ASP n 1 154 GLN n 1 155 CYS n 1 156 LEU n 1 157 MET n 1 158 ILE n 1 159 LEU n 1 160 ASN n 1 161 SER n 1 162 PRO n 1 163 GLY n 1 164 ASN n 1 165 GLN n 1 166 ILE n 1 167 LEU n 1 168 SER n 1 169 GLY n 1 170 LEU n 1 171 SER n 1 172 ILE n 1 173 GLU n 1 174 GLU n 1 175 TYR n 1 176 LYS n 1 177 THR n 1 178 THR n 1 179 LEU n 1 180 LYS n 1 181 ILE n 1 182 ILE n 1 183 LYS n 1 184 GLN n 1 185 ALA n 1 186 ILE n 1 187 LEU n 1 188 ALA n 1 189 THR n 1 190 ASP n 1 191 LEU n 1 192 ALA n 1 193 LEU n 1 194 TYR n 1 195 ILE n 1 196 LYS n 1 197 ARG n 1 198 ARG n 1 199 GLY n 1 200 GLU n 1 201 PHE n 1 202 PHE n 1 203 GLU n 1 204 LEU n 1 205 ILE n 1 206 ARG n 1 207 LYS n 1 208 ASN n 1 209 GLN n 1 210 PHE n 1 211 ASN n 1 212 LEU n 1 213 GLU n 1 214 ASP n 1 215 PRO n 1 216 HIS n 1 217 GLN n 1 218 LYS n 1 219 GLU n 1 220 LEU n 1 221 PHE n 1 222 LEU n 1 223 ALA n 1 224 MET n 1 225 LEU n 1 226 MET n 1 227 THR n 1 228 ALA n 1 229 CYS n 1 230 ASP n 1 231 LEU n 1 232 SER n 1 233 ALA n 1 234 ILE n 1 235 THR n 1 236 LYS n 1 237 PRO n 1 238 TRP n 1 239 PRO n 1 240 ILE n 1 241 GLN n 1 242 GLN n 1 243 ARG n 1 244 ILE n 1 245 ALA n 1 246 GLU n 1 247 LEU n 1 248 VAL n 1 249 ALA n 1 250 THR n 1 251 GLU n 1 252 PHE n 1 253 PHE n 1 254 ASP n 1 255 GLN n 1 256 GLY n 1 257 ASP n 1 258 ARG n 1 259 GLU n 1 260 ARG n 1 261 LYS n 1 262 GLU n 1 263 LEU n 1 264 ASN n 1 265 ILE n 1 266 GLU n 1 267 PRO n 1 268 THR n 1 269 ASP n 1 270 LEU n 1 271 MET n 1 272 ASN n 1 273 ARG n 1 274 GLU n 1 275 LYS n 1 276 LYS n 1 277 ASN n 1 278 LYS n 1 279 ILE n 1 280 PRO n 1 281 SER n 1 282 MET n 1 283 GLN n 1 284 VAL n 1 285 GLY n 1 286 PHE n 1 287 ILE n 1 288 ASP n 1 289 ALA n 1 290 ILE n 1 291 CYS n 1 292 LEU n 1 293 GLN n 1 294 LEU n 1 295 TYR n 1 296 GLU n 1 297 ALA n 1 298 LEU n 1 299 THR n 1 300 HIS n 1 301 VAL n 1 302 SER n 1 303 GLU n 1 304 ASP n 1 305 CYS n 1 306 PHE n 1 307 PRO n 1 308 LEU n 1 309 LEU n 1 310 ASP n 1 311 GLY n 1 312 CYS n 1 313 ARG n 1 314 LYS n 1 315 ASN n 1 316 ARG n 1 317 GLN n 1 318 LYS n 1 319 TRP n 1 320 GLN n 1 321 ALA n 1 322 LEU n 1 323 ALA n 1 324 GLU n 1 325 GLN n 1 326 GLN n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name human _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene 'PDE5A, PDE5' _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Homo sapiens' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 9606 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain ? _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type plasmid _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name pET15 _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight 24E non-polymer . '3-(4-hydroxybenzyl)-1-(thiophen-2-yl)chromeno[2,3-c]pyrrol-9(2H)-one' ? 'C22 H15 N O3 S' 373.424 ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 MG non-polymer . 'MAGNESIUM ION' ? 'Mg 2' 24.305 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 SO4 non-polymer . 'SULFATE ION' ? 'O4 S -2' 96.063 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 ZN non-polymer . 'ZINC ION' ? 'Zn 2' 65.409 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 GLU 1 535 535 GLU GLU A . n A 1 2 GLU 2 536 536 GLU GLU A . n A 1 3 THR 3 537 537 THR THR A . n A 1 4 ARG 4 538 538 ARG ARG A . n A 1 5 GLU 5 539 539 GLU GLU A . n A 1 6 LEU 6 540 540 LEU LEU A . n A 1 7 GLN 7 541 541 GLN GLN A . n A 1 8 SER 8 542 542 SER SER A . n A 1 9 LEU 9 543 543 LEU LEU A . n A 1 10 ALA 10 544 544 ALA ALA A . n A 1 11 ALA 11 545 545 ALA ALA A . n A 1 12 ALA 12 546 546 ALA ALA A . n A 1 13 VAL 13 547 547 VAL VAL A . n A 1 14 VAL 14 548 548 VAL VAL A . n A 1 15 PRO 15 549 549 PRO PRO A . n A 1 16 SER 16 550 550 SER SER A . n A 1 17 ALA 17 551 551 ALA ALA A . n A 1 18 GLN 18 552 552 GLN GLN A . n A 1 19 THR 19 553 553 THR THR A . n A 1 20 LEU 20 554 554 LEU LEU A . n A 1 21 LYS 21 555 555 LYS LYS A . n A 1 22 ILE 22 556 556 ILE ILE A . n A 1 23 THR 23 557 557 THR THR A . n A 1 24 ASP 24 558 558 ASP ASP A . n A 1 25 PHE 25 559 559 PHE PHE A . n A 1 26 SER 26 560 560 SER SER A . n A 1 27 PHE 27 561 561 PHE PHE A . n A 1 28 SER 28 562 562 SER SER A . n A 1 29 ASP 29 563 563 ASP ASP A . n A 1 30 PHE 30 564 564 PHE PHE A . n A 1 31 GLU 31 565 565 GLU GLU A . n A 1 32 LEU 32 566 566 LEU LEU A . n A 1 33 SER 33 567 567 SER SER A . n A 1 34 ASP 34 568 568 ASP ASP A . n A 1 35 LEU 35 569 569 LEU LEU A . n A 1 36 GLU 36 570 570 GLU GLU A . n A 1 37 THR 37 571 571 THR THR A . n A 1 38 ALA 38 572 572 ALA ALA A . n A 1 39 LEU 39 573 573 LEU LEU A . n A 1 40 CYS 40 574 574 CYS CYS A . n A 1 41 THR 41 575 575 THR THR A . n A 1 42 ILE 42 576 576 ILE ILE A . n A 1 43 ARG 43 577 577 ARG ARG A . n A 1 44 MET 44 578 578 MET MET A . n A 1 45 PHE 45 579 579 PHE PHE A . n A 1 46 THR 46 580 580 THR THR A . n A 1 47 ASP 47 581 581 ASP ASP A . n A 1 48 LEU 48 582 582 LEU LEU A . n A 1 49 ASN 49 583 583 ASN ASN A . n A 1 50 LEU 50 584 584 LEU LEU A . n A 1 51 VAL 51 585 585 VAL VAL A . n A 1 52 GLN 52 586 586 GLN GLN A . n A 1 53 ASN 53 587 587 ASN ASN A . n A 1 54 PHE 54 588 588 PHE PHE A . n A 1 55 GLN 55 589 589 GLN GLN A . n A 1 56 MET 56 590 590 MET MET A . n A 1 57 LYS 57 591 591 LYS LYS A . n A 1 58 HIS 58 592 592 HIS HIS A . n A 1 59 GLU 59 593 593 GLU GLU A . n A 1 60 VAL 60 594 594 VAL VAL A . n A 1 61 LEU 61 595 595 LEU LEU A . n A 1 62 CYS 62 596 596 CYS CYS A . n A 1 63 ARG 63 597 597 ARG ARG A . n A 1 64 TRP 64 598 598 TRP TRP A . n A 1 65 ILE 65 599 599 ILE ILE A . n A 1 66 LEU 66 600 600 LEU LEU A . n A 1 67 SER 67 601 601 SER SER A . n A 1 68 VAL 68 602 602 VAL VAL A . n A 1 69 LYS 69 603 603 LYS LYS A . n A 1 70 LYS 70 604 604 LYS LYS A . n A 1 71 ASN 71 605 605 ASN ASN A . n A 1 72 TYR 72 606 606 TYR TYR A . n A 1 73 ARG 73 607 607 ARG ARG A . n A 1 74 LYS 74 608 608 LYS LYS A . n A 1 75 ASN 75 609 609 ASN ASN A . n A 1 76 VAL 76 610 610 VAL VAL A . n A 1 77 ALA 77 611 611 ALA ALA A . n A 1 78 TYR 78 612 612 TYR TYR A . n A 1 79 HIS 79 613 613 HIS HIS A . n A 1 80 ASN 80 614 614 ASN ASN A . n A 1 81 TRP 81 615 615 TRP TRP A . n A 1 82 ARG 82 616 616 ARG ARG A . n A 1 83 HIS 83 617 617 HIS HIS A . n A 1 84 ALA 84 618 618 ALA ALA A . n A 1 85 PHE 85 619 619 PHE PHE A . n A 1 86 ASN 86 620 620 ASN ASN A . n A 1 87 THR 87 621 621 THR THR A . n A 1 88 ALA 88 622 622 ALA ALA A . n A 1 89 GLN 89 623 623 GLN GLN A . n A 1 90 CYS 90 624 624 CYS CYS A . n A 1 91 MET 91 625 625 MET MET A . n A 1 92 PHE 92 626 626 PHE PHE A . n A 1 93 ALA 93 627 627 ALA ALA A . n A 1 94 ALA 94 628 628 ALA ALA A . n A 1 95 LEU 95 629 629 LEU LEU A . n A 1 96 LYS 96 630 630 LYS LYS A . n A 1 97 ALA 97 631 631 ALA ALA A . n A 1 98 GLY 98 632 632 GLY GLY A . n A 1 99 LYS 99 633 633 LYS LYS A . n A 1 100 ILE 100 634 634 ILE ILE A . n A 1 101 GLN 101 635 635 GLN GLN A . n A 1 102 ASN 102 636 636 ASN ASN A . n A 1 103 LYS 103 637 637 LYS LYS A . n A 1 104 LEU 104 638 638 LEU LEU A . n A 1 105 THR 105 639 639 THR THR A . n A 1 106 ASP 106 640 640 ASP ASP A . n A 1 107 LEU 107 641 641 LEU LEU A . n A 1 108 GLU 108 642 642 GLU GLU A . n A 1 109 ILE 109 643 643 ILE ILE A . n A 1 110 LEU 110 644 644 LEU LEU A . n A 1 111 ALA 111 645 645 ALA ALA A . n A 1 112 LEU 112 646 646 LEU LEU A . n A 1 113 LEU 113 647 647 LEU LEU A . n A 1 114 ILE 114 648 648 ILE ILE A . n A 1 115 ALA 115 649 649 ALA ALA A . n A 1 116 ALA 116 650 650 ALA ALA A . n A 1 117 LEU 117 651 651 LEU LEU A . n A 1 118 SER 118 652 652 SER SER A . n A 1 119 HIS 119 653 653 HIS HIS A . n A 1 120 ASP 120 654 654 ASP ASP A . n A 1 121 LEU 121 655 655 LEU LEU A . n A 1 122 ASP 122 656 656 ASP ASP A . n A 1 123 HIS 123 657 657 HIS HIS A . n A 1 124 ARG 124 658 658 ARG ARG A . n A 1 125 GLY 125 659 659 GLY GLY A . n A 1 126 VAL 126 660 660 VAL VAL A . n A 1 127 ASN 127 661 661 ASN ASN A . n A 1 128 ASN 128 662 662 ASN ASN A . n A 1 129 SER 129 663 663 SER SER A . n A 1 130 TYR 130 664 664 TYR TYR A . n A 1 131 ILE 131 665 665 ILE ILE A . n A 1 132 GLN 132 666 666 GLN GLN A . n A 1 133 ARG 133 667 ? ? ? A . n A 1 134 SER 134 668 ? ? ? A . n A 1 135 GLU 135 669 ? ? ? A . n A 1 136 HIS 136 670 ? ? ? A . n A 1 137 PRO 137 671 ? ? ? A . n A 1 138 LEU 138 672 ? ? ? A . n A 1 139 ALA 139 673 ? ? ? A . n A 1 140 GLN 140 674 ? ? ? A . n A 1 141 LEU 141 675 ? ? ? A . n A 1 142 TYR 142 676 ? ? ? A . n A 1 143 CYS 143 677 677 CYS CYS A . n A 1 144 HIS 144 678 678 HIS HIS A . n A 1 145 SER 145 679 679 SER SER A . n A 1 146 ILE 146 680 680 ILE ILE A . n A 1 147 MET 147 681 681 MET MET A . n A 1 148 GLU 148 682 682 GLU GLU A . n A 1 149 HIS 149 683 683 HIS HIS A . n A 1 150 HIS 150 684 684 HIS HIS A . n A 1 151 HIS 151 685 685 HIS HIS A . n A 1 152 PHE 152 686 686 PHE PHE A . n A 1 153 ASP 153 687 687 ASP ASP A . n A 1 154 GLN 154 688 688 GLN GLN A . n A 1 155 CYS 155 689 689 CYS CYS A . n A 1 156 LEU 156 690 690 LEU LEU A . n A 1 157 MET 157 691 691 MET MET A . n A 1 158 ILE 158 692 692 ILE ILE A . n A 1 159 LEU 159 693 693 LEU LEU A . n A 1 160 ASN 160 694 694 ASN ASN A . n A 1 161 SER 161 695 695 SER SER A . n A 1 162 PRO 162 696 696 PRO PRO A . n A 1 163 GLY 163 697 697 GLY GLY A . n A 1 164 ASN 164 698 698 ASN ASN A . n A 1 165 GLN 165 699 699 GLN GLN A . n A 1 166 ILE 166 700 700 ILE ILE A . n A 1 167 LEU 167 701 701 LEU LEU A . n A 1 168 SER 168 702 702 SER SER A . n A 1 169 GLY 169 703 703 GLY GLY A . n A 1 170 LEU 170 704 704 LEU LEU A . n A 1 171 SER 171 705 705 SER SER A . n A 1 172 ILE 172 706 706 ILE ILE A . n A 1 173 GLU 173 707 707 GLU GLU A . n A 1 174 GLU 174 708 708 GLU GLU A . n A 1 175 TYR 175 709 709 TYR TYR A . n A 1 176 LYS 176 710 710 LYS LYS A . n A 1 177 THR 177 711 711 THR THR A . n A 1 178 THR 178 712 712 THR THR A . n A 1 179 LEU 179 713 713 LEU LEU A . n A 1 180 LYS 180 714 714 LYS LYS A . n A 1 181 ILE 181 715 715 ILE ILE A . n A 1 182 ILE 182 716 716 ILE ILE A . n A 1 183 LYS 183 717 717 LYS LYS A . n A 1 184 GLN 184 718 718 GLN GLN A . n A 1 185 ALA 185 719 719 ALA ALA A . n A 1 186 ILE 186 720 720 ILE ILE A . n A 1 187 LEU 187 721 721 LEU LEU A . n A 1 188 ALA 188 722 722 ALA ALA A . n A 1 189 THR 189 723 723 THR THR A . n A 1 190 ASP 190 724 724 ASP ASP A . n A 1 191 LEU 191 725 725 LEU LEU A . n A 1 192 ALA 192 726 726 ALA ALA A . n A 1 193 LEU 193 727 727 LEU LEU A . n A 1 194 TYR 194 728 728 TYR TYR A . n A 1 195 ILE 195 729 729 ILE ILE A . n A 1 196 LYS 196 730 730 LYS LYS A . n A 1 197 ARG 197 731 731 ARG ARG A . n A 1 198 ARG 198 732 732 ARG ARG A . n A 1 199 GLY 199 733 733 GLY GLY A . n A 1 200 GLU 200 734 734 GLU GLU A . n A 1 201 PHE 201 735 735 PHE PHE A . n A 1 202 PHE 202 736 736 PHE PHE A . n A 1 203 GLU 203 737 737 GLU GLU A . n A 1 204 LEU 204 738 738 LEU LEU A . n A 1 205 ILE 205 739 739 ILE ILE A . n A 1 206 ARG 206 740 740 ARG ARG A . n A 1 207 LYS 207 741 741 LYS LYS A . n A 1 208 ASN 208 742 742 ASN ASN A . n A 1 209 GLN 209 743 743 GLN GLN A . n A 1 210 PHE 210 744 744 PHE PHE A . n A 1 211 ASN 211 745 745 ASN ASN A . n A 1 212 LEU 212 746 746 LEU LEU A . n A 1 213 GLU 213 747 747 GLU GLU A . n A 1 214 ASP 214 748 748 ASP ASP A . n A 1 215 PRO 215 749 749 PRO PRO A . n A 1 216 HIS 216 750 750 HIS HIS A . n A 1 217 GLN 217 751 751 GLN GLN A . n A 1 218 LYS 218 752 752 LYS LYS A . n A 1 219 GLU 219 753 753 GLU GLU A . n A 1 220 LEU 220 754 754 LEU LEU A . n A 1 221 PHE 221 755 755 PHE PHE A . n A 1 222 LEU 222 756 756 LEU LEU A . n A 1 223 ALA 223 757 757 ALA ALA A . n A 1 224 MET 224 758 758 MET MET A . n A 1 225 LEU 225 759 759 LEU LEU A . n A 1 226 MET 226 760 760 MET MET A . n A 1 227 THR 227 761 761 THR THR A . n A 1 228 ALA 228 762 762 ALA ALA A . n A 1 229 CYS 229 763 763 CYS CYS A . n A 1 230 ASP 230 764 764 ASP ASP A . n A 1 231 LEU 231 765 765 LEU LEU A . n A 1 232 SER 232 766 766 SER SER A . n A 1 233 ALA 233 767 767 ALA ALA A . n A 1 234 ILE 234 768 768 ILE ILE A . n A 1 235 THR 235 769 769 THR THR A . n A 1 236 LYS 236 770 770 LYS LYS A . n A 1 237 PRO 237 771 771 PRO PRO A . n A 1 238 TRP 238 772 772 TRP TRP A . n A 1 239 PRO 239 773 773 PRO PRO A . n A 1 240 ILE 240 774 774 ILE ILE A . n A 1 241 GLN 241 775 775 GLN GLN A . n A 1 242 GLN 242 776 776 GLN GLN A . n A 1 243 ARG 243 777 777 ARG ARG A . n A 1 244 ILE 244 778 778 ILE ILE A . n A 1 245 ALA 245 779 779 ALA ALA A . n A 1 246 GLU 246 780 780 GLU GLU A . n A 1 247 LEU 247 781 781 LEU LEU A . n A 1 248 VAL 248 782 782 VAL VAL A . n A 1 249 ALA 249 783 783 ALA ALA A . n A 1 250 THR 250 784 784 THR THR A . n A 1 251 GLU 251 785 785 GLU GLU A . n A 1 252 PHE 252 786 786 PHE PHE A . n A 1 253 PHE 253 787 787 PHE PHE A . n A 1 254 ASP 254 788 788 ASP ASP A . n A 1 255 GLN 255 789 789 GLN GLN A . n A 1 256 GLY 256 790 790 GLY GLY A . n A 1 257 ASP 257 791 ? ? ? A . n A 1 258 ARG 258 792 ? ? ? A . n A 1 259 GLU 259 793 ? ? ? A . n A 1 260 ARG 260 794 ? ? ? A . n A 1 261 LYS 261 795 ? ? ? A . n A 1 262 GLU 262 796 ? ? ? A . n A 1 263 LEU 263 797 ? ? ? A . n A 1 264 ASN 264 798 ? ? ? A . n A 1 265 ILE 265 799 ? ? ? A . n A 1 266 GLU 266 800 ? ? ? A . n A 1 267 PRO 267 801 ? ? ? A . n A 1 268 THR 268 802 ? ? ? A . n A 1 269 ASP 269 803 ? ? ? A . n A 1 270 LEU 270 804 ? ? ? A . n A 1 271 MET 271 805 ? ? ? A . n A 1 272 ASN 272 806 ? ? ? A . n A 1 273 ARG 273 807 ? ? ? A . n A 1 274 GLU 274 808 808 GLU GLU A . n A 1 275 LYS 275 809 809 LYS LYS A . n A 1 276 LYS 276 810 810 LYS LYS A . n A 1 277 ASN 277 811 811 ASN ASN A . n A 1 278 LYS 278 812 812 LYS LYS A . n A 1 279 ILE 279 813 813 ILE ILE A . n A 1 280 PRO 280 814 814 PRO PRO A . n A 1 281 SER 281 815 815 SER SER A . n A 1 282 MET 282 816 816 MET MET A . n A 1 283 GLN 283 817 817 GLN GLN A . n A 1 284 VAL 284 818 818 VAL VAL A . n A 1 285 GLY 285 819 819 GLY GLY A . n A 1 286 PHE 286 820 820 PHE PHE A . n A 1 287 ILE 287 821 821 ILE ILE A . n A 1 288 ASP 288 822 822 ASP ASP A . n A 1 289 ALA 289 823 823 ALA ALA A . n A 1 290 ILE 290 824 824 ILE ILE A . n A 1 291 CYS 291 825 825 CYS CYS A . n A 1 292 LEU 292 826 826 LEU LEU A . n A 1 293 GLN 293 827 827 GLN GLN A . n A 1 294 LEU 294 828 828 LEU LEU A . n A 1 295 TYR 295 829 829 TYR TYR A . n A 1 296 GLU 296 830 830 GLU GLU A . n A 1 297 ALA 297 831 831 ALA ALA A . n A 1 298 LEU 298 832 832 LEU LEU A . n A 1 299 THR 299 833 833 THR THR A . n A 1 300 HIS 300 834 834 HIS HIS A . n A 1 301 VAL 301 835 835 VAL VAL A . n A 1 302 SER 302 836 836 SER SER A . n A 1 303 GLU 303 837 837 GLU GLU A . n A 1 304 ASP 304 838 838 ASP ASP A . n A 1 305 CYS 305 839 839 CYS CYS A . n A 1 306 PHE 306 840 840 PHE PHE A . n A 1 307 PRO 307 841 841 PRO PRO A . n A 1 308 LEU 308 842 842 LEU LEU A . n A 1 309 LEU 309 843 843 LEU LEU A . n A 1 310 ASP 310 844 844 ASP ASP A . n A 1 311 GLY 311 845 845 GLY GLY A . n A 1 312 CYS 312 846 846 CYS CYS A . n A 1 313 ARG 313 847 847 ARG ARG A . n A 1 314 LYS 314 848 848 LYS LYS A . n A 1 315 ASN 315 849 849 ASN ASN A . n A 1 316 ARG 316 850 850 ARG ARG A . n A 1 317 GLN 317 851 851 GLN GLN A . n A 1 318 LYS 318 852 852 LYS LYS A . n A 1 319 TRP 319 853 853 TRP TRP A . n A 1 320 GLN 320 854 854 GLN GLN A . n A 1 321 ALA 321 855 855 ALA ALA A . n A 1 322 LEU 322 856 856 LEU LEU A . n A 1 323 ALA 323 857 857 ALA ALA A . n A 1 324 GLU 324 858 858 GLU GLU A . n A 1 325 GLN 325 859 859 GLN GLN A . n A 1 326 GLN 326 860 860 GLN GLN A . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 SO4 1 901 378 SO4 SO4 A . C 3 24E 1 902 1 24E 5R A . D 4 ZN 1 903 501 ZN ZN A . E 5 MG 1 904 502 MG MG A . F 6 HOH 1 1001 1 HOH TIP A . F 6 HOH 2 1002 2 HOH TIP A . F 6 HOH 3 1003 3 HOH TIP A . F 6 HOH 4 1004 4 HOH TIP A . F 6 HOH 5 1005 5 HOH TIP A . F 6 HOH 6 1006 6 HOH TIP A . F 6 HOH 7 1007 7 HOH TIP A . F 6 HOH 8 1008 8 HOH TIP A . F 6 HOH 9 1009 9 HOH TIP A . F 6 HOH 10 1010 10 HOH TIP A . F 6 HOH 11 1011 11 HOH TIP A . F 6 HOH 12 1012 12 HOH TIP A . F 6 HOH 13 1013 13 HOH TIP A . F 6 HOH 14 1014 14 HOH TIP A . F 6 HOH 15 1015 15 HOH TIP A . F 6 HOH 16 1016 16 HOH TIP A . F 6 HOH 17 1017 17 HOH TIP A . F 6 HOH 18 1018 18 HOH TIP A . F 6 HOH 19 1019 19 HOH TIP A . F 6 HOH 20 1020 20 HOH TIP A . F 6 HOH 21 1021 21 HOH TIP A . F 6 HOH 22 1022 22 HOH TIP A . F 6 HOH 23 1023 23 HOH TIP A . F 6 HOH 24 1024 24 HOH TIP A . F 6 HOH 25 1025 25 HOH TIP A . F 6 HOH 26 1026 26 HOH TIP A . F 6 HOH 27 1027 27 HOH TIP A . F 6 HOH 28 1028 28 HOH TIP A . F 6 HOH 29 1029 29 HOH TIP A . F 6 HOH 30 1030 30 HOH TIP A . F 6 HOH 31 1031 31 HOH TIP A . F 6 HOH 32 1032 32 HOH TIP A . F 6 HOH 33 1033 33 HOH TIP A . F 6 HOH 34 1034 34 HOH TIP A . F 6 HOH 35 1035 35 HOH TIP A . F 6 HOH 36 1036 36 HOH TIP A . F 6 HOH 37 1037 37 HOH TIP A . F 6 HOH 38 1038 38 HOH TIP A . F 6 HOH 39 1039 39 HOH TIP A . F 6 HOH 40 1040 40 HOH TIP A . F 6 HOH 41 1041 41 HOH TIP A . F 6 HOH 42 1042 42 HOH TIP A . F 6 HOH 43 1043 43 HOH TIP A . F 6 HOH 44 1044 44 HOH TIP A . F 6 HOH 45 1045 45 HOH TIP A . F 6 HOH 46 1046 46 HOH TIP A . F 6 HOH 47 1047 47 HOH TIP A . F 6 HOH 48 1048 48 HOH TIP A . F 6 HOH 49 1049 49 HOH TIP A . F 6 HOH 50 1050 50 HOH TIP A . F 6 HOH 51 1051 51 HOH TIP A . F 6 HOH 52 1052 52 HOH TIP A . F 6 HOH 53 1053 53 HOH TIP A . F 6 HOH 54 1054 54 HOH TIP A . F 6 HOH 55 1055 55 HOH TIP A . F 6 HOH 56 1056 56 HOH TIP A . F 6 HOH 57 1057 57 HOH TIP A . F 6 HOH 58 1058 58 HOH TIP A . F 6 HOH 59 1059 59 HOH TIP A . F 6 HOH 60 1060 60 HOH TIP A . F 6 HOH 61 1061 61 HOH TIP A . F 6 HOH 62 1062 62 HOH TIP A . F 6 HOH 63 1063 63 HOH TIP A . F 6 HOH 64 1064 64 HOH TIP A . F 6 HOH 65 1065 65 HOH TIP A . F 6 HOH 66 1066 66 HOH TIP A . F 6 HOH 67 1067 67 HOH TIP A . F 6 HOH 68 1068 68 HOH TIP A . F 6 HOH 69 1069 69 HOH TIP A . F 6 HOH 70 1070 70 HOH TIP A . F 6 HOH 71 1071 71 HOH TIP A . # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal HKL-2000 'data collection' . ? 1 AMoRE phasing . ? 2 CNS refinement . ? 3 HKL-2000 'data reduction' . ? 4 HKL-2000 'data scaling' . ? 5 # _cell.entry_id 4MD6 _cell.length_a 74.106 _cell.length_b 74.106 _cell.length_c 132.344 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 120.00 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 4MD6 _symmetry.space_group_name_H-M 'P 31 2 1' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 152 _symmetry.space_group_name_Hall ? # _exptl.entry_id 4MD6 _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 2.78 _exptl_crystal.density_percent_sol 55.69 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.temp 277 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 6.5 _exptl_crystal_grow.pdbx_details ;6-10 mg/mL unliganded PDE5A1 in storage buffer (50 mM sodium chloride, 20 mM Tris-HCl, pH 7.5, 1 mM BME, 1 mM EDTA) against 0.2 M magnesium sulfate, 0.1 M sodium cacodylate, pH 6.5, 18% PEG3350, VAPOR DIFFUSION, HANGING DROP, temperature 277K ; _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'ADSC QUANTUM 315' _diffrn_detector.pdbx_collection_date 2013-06-20 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator 'Rosenbaum-Rock double crystal sagittal focusing' _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 1 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'NSLS BEAMLINE X29A' _diffrn_source.pdbx_synchrotron_site NSLS _diffrn_source.pdbx_synchrotron_beamline X29A _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list 1 # _reflns.entry_id 4MD6 _reflns.observed_criterion_sigma_I 0 _reflns.observed_criterion_sigma_F 0 _reflns.d_resolution_low 30.0 _reflns.d_resolution_high 2.0 _reflns.number_obs 29180 _reflns.number_all 29180 _reflns.percent_possible_obs 100 _reflns.pdbx_Rmerge_I_obs 0.065 _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI 14.0 _reflns.B_iso_Wilson_estimate ? _reflns.pdbx_redundancy 22.8 _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_ordinal 1 _reflns.pdbx_diffrn_id 1 # _reflns_shell.d_res_high 2.0 _reflns_shell.d_res_low ? _reflns_shell.percent_possible_all ? _reflns_shell.Rmerge_I_obs ? _reflns_shell.pdbx_Rsym_value ? _reflns_shell.meanI_over_sigI_obs ? _reflns_shell.pdbx_redundancy ? _reflns_shell.percent_possible_obs ? _reflns_shell.number_unique_all ? _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_unique_obs ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_ordinal 1 _reflns_shell.pdbx_diffrn_id 1 # _refine.entry_id 4MD6 _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.ls_d_res_high 2.0000 _refine.ls_d_res_low 30.0000 _refine.pdbx_ls_sigma_F 0.000 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.ls_percent_reflns_obs 97.7000 _refine.ls_number_reflns_obs 28434 _refine.ls_number_reflns_all ? _refine.pdbx_ls_cross_valid_method ? _refine.ls_matrix_type ? _refine.pdbx_R_Free_selection_details RANDOM _refine.details ? _refine.ls_R_factor_all ? _refine.ls_R_factor_obs 0.217 _refine.ls_R_factor_R_work 0.2170 _refine.ls_wR_factor_R_work ? _refine.ls_R_factor_R_free 0.2475 _refine.ls_wR_factor_R_free ? _refine.ls_percent_reflns_R_free 9.7000 _refine.ls_number_reflns_R_free 2830 _refine.ls_number_reflns_R_work 25604 _refine.ls_R_factor_R_free_error ? _refine.B_iso_mean 47.7960 _refine.solvent_model_param_bsol 60.1800 _refine.solvent_model_param_ksol ? _refine.pdbx_isotropic_thermal_model ISOTROPIC _refine.aniso_B[1][1] 1.0200 _refine.aniso_B[2][2] 1.0200 _refine.aniso_B[3][3] -2.0400 _refine.aniso_B[1][2] 0.0000 _refine.aniso_B[1][3] 0.0000 _refine.aniso_B[2][3] 0.0000 _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? _refine.overall_SU_R_free ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML ? _refine.overall_SU_B ? _refine.solvent_model_details ? _refine.pdbx_solvent_vdw_probe_radii ? _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii ? _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_stereochemistry_target_values 'Engh & Huber' _refine.pdbx_stereochem_target_val_spec_case ? _refine.overall_FOM_work_R_set ? _refine.B_iso_max 96.610 _refine.B_iso_min 24.680 _refine.pdbx_overall_phase_error ? _refine.occupancy_max 1.000 _refine.occupancy_min 1.000 _refine.pdbx_ls_sigma_I ? _refine.ls_redundancy_reflns_obs ? _refine.ls_R_factor_R_free_error_details ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.overall_FOM_free_R_set ? _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 2418 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 34 _refine_hist.number_atoms_solvent 71 _refine_hist.number_atoms_total 2523 _refine_hist.d_res_high 2.0000 _refine_hist.d_res_low 30.0000 # loop_ _refine_ls_restr.pdbx_refine_id _refine_ls_restr.type _refine_ls_restr.number _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.pdbx_restraint_function 'X-RAY DIFFRACTION' c_mcbond_it ? 1.475 1.500 ? ? 'X-RAY DIFFRACTION' c_scbond_it ? 2.175 2.000 ? ? 'X-RAY DIFFRACTION' c_mcangle_it ? 2.326 2.000 ? ? 'X-RAY DIFFRACTION' c_scangle_it ? 3.121 2.500 ? ? 'X-RAY DIFFRACTION' c_bond_d ? 0.0052 ? ? ? 'X-RAY DIFFRACTION' c_angle_deg ? 1.1 ? ? ? # loop_ _pdbx_xplor_file.pdbx_refine_id _pdbx_xplor_file.serial_no _pdbx_xplor_file.param_file _pdbx_xplor_file.topol_file 'X-RAY DIFFRACTION' 1 CNS_TOPPAR:protein_rep.param ? 'X-RAY DIFFRACTION' 2 CNS_TOPPAR:water_rep.param ? 'X-RAY DIFFRACTION' 3 CNS_TOPPAR:dna-rna_rep.param ? 'X-RAY DIFFRACTION' 4 5r.param ? 'X-RAY DIFFRACTION' 5 ion.param ? # _database_PDB_matrix.entry_id 4MD6 _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _struct.entry_id 4MD6 _struct.title 'Crystal structure of PDE5 in complex with inhibitor 5R' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 4MD6 _struct_keywords.pdbx_keywords 'HYDROLASE/HYDROLASE INHIBITOR' _struct_keywords.text 'protein-inhibitor complex, phosphodiesterase, PDE5 inhibitor, HYDROLASE-HYDROLASE INHIBITOR complex' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? D N N 4 ? E N N 5 ? F N N 6 ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code PDE5A_HUMAN _struct_ref.pdbx_db_accession O76074 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;EETRELQSLAAAVVPSAQTLKITDFSFSDFELSDLETALCTIRMFTDLNLVQNFQMKHEVLCRWILSVKKNYRKNVAYHN WRHAFNTAQCMFAALKAGKIQNKLTDLEILALLIAALSHDLDHRGVNNSYIQRSEHPLAQLYCHSIMEHHHFDQCLMILN SPGNQILSGLSIEEYKTTLKIIKQAILATDLALYIKRRGEFFELIRKNQFNLEDPHQKELFLAMLMTACDLSAITKPWPI QQRIAELVATEFFDQGDRERKELNIEPTDLMNREKKNKIPSMQVGFIDAICLQLYEALTHVSEDCFPLLDGCRKNRQKWQ ALAEQQ ; _struct_ref.pdbx_align_begin 535 _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 4MD6 _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 1 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 326 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession O76074 _struct_ref_seq.db_align_beg 535 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 860 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 535 _struct_ref_seq.pdbx_auth_seq_align_end 860 # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # _struct_biol.id 1 _struct_biol.details ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 GLU A 1 ? ALA A 12 ? GLU A 535 ALA A 546 1 ? 12 HELX_P HELX_P2 2 SER A 16 ? LYS A 21 ? SER A 550 LYS A 555 1 ? 6 HELX_P HELX_P3 3 SER A 33 ? LEU A 48 ? SER A 567 LEU A 582 1 ? 16 HELX_P HELX_P4 4 ASN A 49 ? PHE A 54 ? ASN A 583 PHE A 588 1 ? 6 HELX_P HELX_P5 5 LYS A 57 ? ASN A 71 ? LYS A 591 ASN A 605 1 ? 15 HELX_P HELX_P6 6 ASN A 80 ? ALA A 97 ? ASN A 614 ALA A 631 1 ? 18 HELX_P HELX_P7 7 ILE A 100 ? LEU A 104 ? ILE A 634 LEU A 638 5 ? 5 HELX_P HELX_P8 8 THR A 105 ? HIS A 119 ? THR A 639 HIS A 653 1 ? 15 HELX_P HELX_P9 9 GLY A 125 ? SER A 129 ? GLY A 659 SER A 663 5 ? 5 HELX_P HELX_P10 10 SER A 145 ? ASN A 160 ? SER A 679 ASN A 694 1 ? 16 HELX_P HELX_P11 11 SER A 171 ? THR A 189 ? SER A 705 THR A 723 1 ? 19 HELX_P HELX_P12 12 ASP A 190 ? LYS A 207 ? ASP A 724 LYS A 741 1 ? 18 HELX_P HELX_P13 13 ASP A 214 ? SER A 232 ? ASP A 748 SER A 766 1 ? 19 HELX_P HELX_P14 14 ALA A 233 ? LYS A 236 ? ALA A 767 LYS A 770 5 ? 4 HELX_P HELX_P15 15 PRO A 237 ? PHE A 253 ? PRO A 771 PHE A 787 1 ? 17 HELX_P HELX_P16 16 GLU A 274 ? ASN A 277 ? GLU A 808 ASN A 811 5 ? 4 HELX_P HELX_P17 17 LYS A 278 ? ILE A 290 ? LYS A 812 ILE A 824 1 ? 13 HELX_P HELX_P18 18 ILE A 290 ? SER A 302 ? ILE A 824 SER A 836 1 ? 13 HELX_P HELX_P19 19 CYS A 305 ? GLU A 324 ? CYS A 839 GLU A 858 1 ? 20 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role disulf1 disulf ? ? A CYS 143 SG ? ? ? 1_555 A CYS 143 SG ? ? A CYS 677 A CYS 677 5_555 ? ? ? ? ? ? ? 1.852 ? ? metalc1 metalc ? ? A HIS 83 NE2 ? ? ? 1_555 D ZN . ZN ? ? A HIS 617 A ZN 903 1_555 ? ? ? ? ? ? ? 2.279 ? ? metalc2 metalc ? ? A HIS 119 NE2 ? ? ? 1_555 D ZN . ZN ? ? A HIS 653 A ZN 903 1_555 ? ? ? ? ? ? ? 2.233 ? ? metalc3 metalc ? ? A ASP 120 OD2 ? ? ? 1_555 D ZN . ZN ? ? A ASP 654 A ZN 903 1_555 ? ? ? ? ? ? ? 2.284 ? ? metalc4 metalc ? ? A ASP 120 OD1 ? ? ? 1_555 E MG . MG ? ? A ASP 654 A MG 904 1_555 ? ? ? ? ? ? ? 2.217 ? ? metalc5 metalc ? ? A ASP 230 OD1 ? ? ? 1_555 D ZN . ZN ? ? A ASP 764 A ZN 903 1_555 ? ? ? ? ? ? ? 2.279 ? ? metalc6 metalc ? ? B SO4 . O3 ? ? ? 1_555 D ZN . ZN ? ? A SO4 901 A ZN 903 1_555 ? ? ? ? ? ? ? 2.182 ? ? metalc7 metalc ? ? D ZN . ZN ? ? ? 1_555 F HOH . O ? ? A ZN 903 A HOH 1001 1_555 ? ? ? ? ? ? ? 2.419 ? ? metalc8 metalc ? ? E MG . MG ? ? ? 1_555 F HOH . O ? ? A MG 904 A HOH 1001 1_555 ? ? ? ? ? ? ? 2.206 ? ? metalc9 metalc ? ? E MG . MG ? ? ? 1_555 F HOH . O ? ? A MG 904 A HOH 1002 1_555 ? ? ? ? ? ? ? 2.302 ? ? metalc10 metalc ? ? E MG . MG ? ? ? 1_555 F HOH . O ? ? A MG 904 A HOH 1003 1_555 ? ? ? ? ? ? ? 2.343 ? ? metalc11 metalc ? ? E MG . MG ? ? ? 1_555 F HOH . O ? ? A MG 904 A HOH 1004 1_555 ? ? ? ? ? ? ? 2.397 ? ? metalc12 metalc ? ? E MG . MG ? ? ? 1_555 F HOH . O ? ? A MG 904 A HOH 1005 1_555 ? ? ? ? ? ? ? 2.380 ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference disulf ? ? metalc ? ? # loop_ _pdbx_struct_conn_angle.id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_alt_id _pdbx_struct_conn_angle.ptnr1_label_asym_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr1_auth_atom_id _pdbx_struct_conn_angle.ptnr1_auth_asym_id _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_PDB_ins_code _pdbx_struct_conn_angle.ptnr1_symmetry _pdbx_struct_conn_angle.ptnr2_label_atom_id _pdbx_struct_conn_angle.ptnr2_label_alt_id _pdbx_struct_conn_angle.ptnr2_label_asym_id _pdbx_struct_conn_angle.ptnr2_label_comp_id _pdbx_struct_conn_angle.ptnr2_label_seq_id _pdbx_struct_conn_angle.ptnr2_auth_atom_id _pdbx_struct_conn_angle.ptnr2_auth_asym_id _pdbx_struct_conn_angle.ptnr2_auth_comp_id _pdbx_struct_conn_angle.ptnr2_auth_seq_id _pdbx_struct_conn_angle.ptnr2_PDB_ins_code _pdbx_struct_conn_angle.ptnr2_symmetry _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_alt_id _pdbx_struct_conn_angle.ptnr3_label_asym_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.ptnr3_auth_atom_id _pdbx_struct_conn_angle.ptnr3_auth_asym_id _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_PDB_ins_code _pdbx_struct_conn_angle.ptnr3_symmetry _pdbx_struct_conn_angle.value _pdbx_struct_conn_angle.value_esd 1 NE2 ? A HIS 83 ? A HIS 617 ? 1_555 ZN ? D ZN . ? A ZN 903 ? 1_555 NE2 ? A HIS 119 ? A HIS 653 ? 1_555 88.7 ? 2 NE2 ? A HIS 83 ? A HIS 617 ? 1_555 ZN ? D ZN . ? A ZN 903 ? 1_555 OD2 ? A ASP 120 ? A ASP 654 ? 1_555 87.6 ? 3 NE2 ? A HIS 119 ? A HIS 653 ? 1_555 ZN ? D ZN . ? A ZN 903 ? 1_555 OD2 ? A ASP 120 ? A ASP 654 ? 1_555 85.9 ? 4 NE2 ? A HIS 83 ? A HIS 617 ? 1_555 ZN ? D ZN . ? A ZN 903 ? 1_555 OD1 ? A ASP 230 ? A ASP 764 ? 1_555 84.3 ? 5 NE2 ? A HIS 119 ? A HIS 653 ? 1_555 ZN ? D ZN . ? A ZN 903 ? 1_555 OD1 ? A ASP 230 ? A ASP 764 ? 1_555 86.2 ? 6 OD2 ? A ASP 120 ? A ASP 654 ? 1_555 ZN ? D ZN . ? A ZN 903 ? 1_555 OD1 ? A ASP 230 ? A ASP 764 ? 1_555 168.8 ? 7 NE2 ? A HIS 83 ? A HIS 617 ? 1_555 ZN ? D ZN . ? A ZN 903 ? 1_555 O3 ? B SO4 . ? A SO4 901 ? 1_555 94.1 ? 8 NE2 ? A HIS 119 ? A HIS 653 ? 1_555 ZN ? D ZN . ? A ZN 903 ? 1_555 O3 ? B SO4 . ? A SO4 901 ? 1_555 176.5 ? 9 OD2 ? A ASP 120 ? A ASP 654 ? 1_555 ZN ? D ZN . ? A ZN 903 ? 1_555 O3 ? B SO4 . ? A SO4 901 ? 1_555 96.1 ? 10 OD1 ? A ASP 230 ? A ASP 764 ? 1_555 ZN ? D ZN . ? A ZN 903 ? 1_555 O3 ? B SO4 . ? A SO4 901 ? 1_555 92.1 ? 11 NE2 ? A HIS 83 ? A HIS 617 ? 1_555 ZN ? D ZN . ? A ZN 903 ? 1_555 O ? F HOH . ? A HOH 1001 ? 1_555 171.9 ? 12 NE2 ? A HIS 119 ? A HIS 653 ? 1_555 ZN ? D ZN . ? A ZN 903 ? 1_555 O ? F HOH . ? A HOH 1001 ? 1_555 91.5 ? 13 OD2 ? A ASP 120 ? A ASP 654 ? 1_555 ZN ? D ZN . ? A ZN 903 ? 1_555 O ? F HOH . ? A HOH 1001 ? 1_555 100.6 ? 14 OD1 ? A ASP 230 ? A ASP 764 ? 1_555 ZN ? D ZN . ? A ZN 903 ? 1_555 O ? F HOH . ? A HOH 1001 ? 1_555 87.6 ? 15 O3 ? B SO4 . ? A SO4 901 ? 1_555 ZN ? D ZN . ? A ZN 903 ? 1_555 O ? F HOH . ? A HOH 1001 ? 1_555 85.4 ? 16 OD1 ? A ASP 120 ? A ASP 654 ? 1_555 MG ? E MG . ? A MG 904 ? 1_555 O ? F HOH . ? A HOH 1001 ? 1_555 103.2 ? 17 OD1 ? A ASP 120 ? A ASP 654 ? 1_555 MG ? E MG . ? A MG 904 ? 1_555 O ? F HOH . ? A HOH 1002 ? 1_555 99.3 ? 18 O ? F HOH . ? A HOH 1001 ? 1_555 MG ? E MG . ? A MG 904 ? 1_555 O ? F HOH . ? A HOH 1002 ? 1_555 96.0 ? 19 OD1 ? A ASP 120 ? A ASP 654 ? 1_555 MG ? E MG . ? A MG 904 ? 1_555 O ? F HOH . ? A HOH 1003 ? 1_555 81.5 ? 20 O ? F HOH . ? A HOH 1001 ? 1_555 MG ? E MG . ? A MG 904 ? 1_555 O ? F HOH . ? A HOH 1003 ? 1_555 85.2 ? 21 O ? F HOH . ? A HOH 1002 ? 1_555 MG ? E MG . ? A MG 904 ? 1_555 O ? F HOH . ? A HOH 1003 ? 1_555 178.3 ? 22 OD1 ? A ASP 120 ? A ASP 654 ? 1_555 MG ? E MG . ? A MG 904 ? 1_555 O ? F HOH . ? A HOH 1004 ? 1_555 164.3 ? 23 O ? F HOH . ? A HOH 1001 ? 1_555 MG ? E MG . ? A MG 904 ? 1_555 O ? F HOH . ? A HOH 1004 ? 1_555 80.0 ? 24 O ? F HOH . ? A HOH 1002 ? 1_555 MG ? E MG . ? A MG 904 ? 1_555 O ? F HOH . ? A HOH 1004 ? 1_555 95.5 ? 25 O ? F HOH . ? A HOH 1003 ? 1_555 MG ? E MG . ? A MG 904 ? 1_555 O ? F HOH . ? A HOH 1004 ? 1_555 83.5 ? 26 OD1 ? A ASP 120 ? A ASP 654 ? 1_555 MG ? E MG . ? A MG 904 ? 1_555 O ? F HOH . ? A HOH 1005 ? 1_555 86.5 ? 27 O ? F HOH . ? A HOH 1001 ? 1_555 MG ? E MG . ? A MG 904 ? 1_555 O ? F HOH . ? A HOH 1005 ? 1_555 169.0 ? 28 O ? F HOH . ? A HOH 1002 ? 1_555 MG ? E MG . ? A MG 904 ? 1_555 O ? F HOH . ? A HOH 1005 ? 1_555 87.2 ? 29 O ? F HOH . ? A HOH 1003 ? 1_555 MG ? E MG . ? A MG 904 ? 1_555 O ? F HOH . ? A HOH 1005 ? 1_555 91.3 ? 30 O ? F HOH . ? A HOH 1004 ? 1_555 MG ? E MG . ? A MG 904 ? 1_555 O ? F HOH . ? A HOH 1005 ? 1_555 89.3 ? # _pdbx_modification_feature.ordinal 1 _pdbx_modification_feature.label_comp_id CYS _pdbx_modification_feature.label_asym_id A _pdbx_modification_feature.label_seq_id 143 _pdbx_modification_feature.label_alt_id ? _pdbx_modification_feature.modified_residue_label_comp_id CYS _pdbx_modification_feature.modified_residue_label_asym_id A _pdbx_modification_feature.modified_residue_label_seq_id 143 _pdbx_modification_feature.modified_residue_label_alt_id ? _pdbx_modification_feature.auth_comp_id CYS _pdbx_modification_feature.auth_asym_id A _pdbx_modification_feature.auth_seq_id 677 _pdbx_modification_feature.PDB_ins_code ? _pdbx_modification_feature.symmetry 1_555 _pdbx_modification_feature.modified_residue_auth_comp_id CYS _pdbx_modification_feature.modified_residue_auth_asym_id A _pdbx_modification_feature.modified_residue_auth_seq_id 677 _pdbx_modification_feature.modified_residue_PDB_ins_code ? _pdbx_modification_feature.modified_residue_symmetry 5_555 _pdbx_modification_feature.comp_id_linking_atom SG _pdbx_modification_feature.modified_residue_id_linking_atom SG _pdbx_modification_feature.modified_residue_id . _pdbx_modification_feature.ref_pcm_id . _pdbx_modification_feature.ref_comp_id . _pdbx_modification_feature.type None _pdbx_modification_feature.category 'Disulfide bridge' # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software A SO4 901 ? 7 'BINDING SITE FOR RESIDUE SO4 A 901' AC2 Software A 24E 902 ? 12 'BINDING SITE FOR RESIDUE 24E A 902' AC3 Software A ZN 903 ? 7 'BINDING SITE FOR RESIDUE ZN A 903' AC4 Software A MG 904 ? 7 'BINDING SITE FOR RESIDUE MG A 904' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 7 HIS A 79 ? HIS A 613 . ? 1_555 ? 2 AC1 7 HIS A 83 ? HIS A 617 . ? 1_555 ? 3 AC1 7 ASP A 120 ? ASP A 654 . ? 1_555 ? 4 AC1 7 ASP A 230 ? ASP A 764 . ? 1_555 ? 5 AC1 7 24E C . ? 24E A 902 . ? 1_555 ? 6 AC1 7 ZN D . ? ZN A 903 . ? 1_555 ? 7 AC1 7 HOH F . ? HOH A 1002 . ? 1_555 ? 8 AC2 12 LEU A 191 ? LEU A 725 . ? 1_555 ? 9 AC2 12 ALA A 233 ? ALA A 767 . ? 1_555 ? 10 AC2 12 ILE A 234 ? ILE A 768 . ? 1_555 ? 11 AC2 12 GLN A 241 ? GLN A 775 . ? 1_555 ? 12 AC2 12 VAL A 248 ? VAL A 782 . ? 1_555 ? 13 AC2 12 ALA A 249 ? ALA A 783 . ? 1_555 ? 14 AC2 12 PHE A 253 ? PHE A 787 . ? 1_555 ? 15 AC2 12 ILE A 279 ? ILE A 813 . ? 1_555 ? 16 AC2 12 MET A 282 ? MET A 816 . ? 1_555 ? 17 AC2 12 GLN A 283 ? GLN A 817 . ? 1_555 ? 18 AC2 12 PHE A 286 ? PHE A 820 . ? 1_555 ? 19 AC2 12 SO4 B . ? SO4 A 901 . ? 1_555 ? 20 AC3 7 HIS A 83 ? HIS A 617 . ? 1_555 ? 21 AC3 7 HIS A 119 ? HIS A 653 . ? 1_555 ? 22 AC3 7 ASP A 120 ? ASP A 654 . ? 1_555 ? 23 AC3 7 ASP A 230 ? ASP A 764 . ? 1_555 ? 24 AC3 7 SO4 B . ? SO4 A 901 . ? 1_555 ? 25 AC3 7 MG E . ? MG A 904 . ? 1_555 ? 26 AC3 7 HOH F . ? HOH A 1001 . ? 1_555 ? 27 AC4 7 ASP A 120 ? ASP A 654 . ? 1_555 ? 28 AC4 7 ZN D . ? ZN A 903 . ? 1_555 ? 29 AC4 7 HOH F . ? HOH A 1001 . ? 1_555 ? 30 AC4 7 HOH F . ? HOH A 1002 . ? 1_555 ? 31 AC4 7 HOH F . ? HOH A 1003 . ? 1_555 ? 32 AC4 7 HOH F . ? HOH A 1004 . ? 1_555 ? 33 AC4 7 HOH F . ? HOH A 1005 . ? 1_555 ? # _pdbx_entry_details.entry_id 4MD6 _pdbx_entry_details.compound_details ? _pdbx_entry_details.source_details ? _pdbx_entry_details.nonpolymer_details ? _pdbx_entry_details.sequence_details ? _pdbx_entry_details.has_ligand_of_interest ? _pdbx_entry_details.has_protein_modification Y # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 LYS A 630 ? ? -84.84 -79.61 2 1 ASN A 662 ? ? -101.28 42.17 3 1 HIS A 678 ? ? 34.80 21.53 4 1 SER A 679 ? ? 31.52 71.21 5 1 PHE A 787 ? ? -94.78 -67.23 6 1 ASP A 788 ? ? -59.42 7.22 7 1 LYS A 809 ? ? -15.10 -100.73 8 1 GLN A 859 ? ? 70.03 104.94 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A ARG 667 ? A ARG 133 2 1 Y 1 A SER 668 ? A SER 134 3 1 Y 1 A GLU 669 ? A GLU 135 4 1 Y 1 A HIS 670 ? A HIS 136 5 1 Y 1 A PRO 671 ? A PRO 137 6 1 Y 1 A LEU 672 ? A LEU 138 7 1 Y 1 A ALA 673 ? A ALA 139 8 1 Y 1 A GLN 674 ? A GLN 140 9 1 Y 1 A LEU 675 ? A LEU 141 10 1 Y 1 A TYR 676 ? A TYR 142 11 1 Y 1 A ASP 791 ? A ASP 257 12 1 Y 1 A ARG 792 ? A ARG 258 13 1 Y 1 A GLU 793 ? A GLU 259 14 1 Y 1 A ARG 794 ? A ARG 260 15 1 Y 1 A LYS 795 ? A LYS 261 16 1 Y 1 A GLU 796 ? A GLU 262 17 1 Y 1 A LEU 797 ? A LEU 263 18 1 Y 1 A ASN 798 ? A ASN 264 19 1 Y 1 A ILE 799 ? A ILE 265 20 1 Y 1 A GLU 800 ? A GLU 266 21 1 Y 1 A PRO 801 ? A PRO 267 22 1 Y 1 A THR 802 ? A THR 268 23 1 Y 1 A ASP 803 ? A ASP 269 24 1 Y 1 A LEU 804 ? A LEU 270 25 1 Y 1 A MET 805 ? A MET 271 26 1 Y 1 A ASN 806 ? A ASN 272 27 1 Y 1 A ARG 807 ? A ARG 273 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal 24E C18 C Y N 1 24E C19 C Y N 2 24E C22 C Y N 3 24E O3 O N N 4 24E C21 C Y N 5 24E C20 C Y N 6 24E C17 C Y N 7 24E C16 C N N 8 24E C10 C Y N 9 24E N1 N Y N 10 24E C9 C Y N 11 24E O1 O N N 12 24E C4 C Y N 13 24E C6 C Y N 14 24E C5 C Y N 15 24E C3 C Y N 16 24E C1 C Y N 17 24E C2 C Y N 18 24E C7 C N N 19 24E O2 O N N 20 24E C8 C Y N 21 24E C11 C Y N 22 24E C12 C Y N 23 24E S1 S Y N 24 24E C15 C Y N 25 24E C14 C Y N 26 24E C13 C Y N 27 24E H1 H N N 28 24E H2 H N N 29 24E H3 H N N 30 24E H4 H N N 31 24E H5 H N N 32 24E H6 H N N 33 24E H7 H N N 34 24E H8 H N N 35 24E H9 H N N 36 24E H10 H N N 37 24E H11 H N N 38 24E H12 H N N 39 24E H13 H N N 40 24E H14 H N N 41 24E H15 H N N 42 ALA N N N N 43 ALA CA C N S 44 ALA C C N N 45 ALA O O N N 46 ALA CB C N N 47 ALA OXT O N N 48 ALA H H N N 49 ALA H2 H N N 50 ALA HA H N N 51 ALA HB1 H N N 52 ALA HB2 H N N 53 ALA HB3 H N N 54 ALA HXT H N N 55 ARG N N N N 56 ARG CA C N S 57 ARG C C N N 58 ARG O O N N 59 ARG CB C N N 60 ARG CG C N N 61 ARG CD C N N 62 ARG NE N N N 63 ARG CZ C N N 64 ARG NH1 N N N 65 ARG NH2 N N N 66 ARG OXT O N N 67 ARG H H N N 68 ARG H2 H N N 69 ARG HA H N N 70 ARG HB2 H N N 71 ARG HB3 H N N 72 ARG HG2 H N N 73 ARG HG3 H N N 74 ARG HD2 H N N 75 ARG HD3 H N N 76 ARG HE H N N 77 ARG HH11 H N N 78 ARG HH12 H N N 79 ARG HH21 H N N 80 ARG HH22 H N N 81 ARG HXT H N N 82 ASN N N N N 83 ASN CA C N S 84 ASN C C N N 85 ASN O O N N 86 ASN CB C N N 87 ASN CG C N N 88 ASN OD1 O N N 89 ASN ND2 N N N 90 ASN OXT O N N 91 ASN H H N N 92 ASN H2 H N N 93 ASN HA H N N 94 ASN HB2 H N N 95 ASN HB3 H N N 96 ASN HD21 H N N 97 ASN HD22 H N N 98 ASN HXT H N N 99 ASP N N N N 100 ASP CA C N S 101 ASP C C N N 102 ASP O O N N 103 ASP CB C N N 104 ASP CG C N N 105 ASP OD1 O N N 106 ASP OD2 O N N 107 ASP OXT O N N 108 ASP H H N N 109 ASP H2 H N N 110 ASP HA H N N 111 ASP HB2 H N N 112 ASP HB3 H N N 113 ASP HD2 H N N 114 ASP HXT H N N 115 CYS N N N N 116 CYS CA C N R 117 CYS C C N N 118 CYS O O N N 119 CYS CB C N N 120 CYS SG S N N 121 CYS OXT O N N 122 CYS H H N N 123 CYS H2 H N N 124 CYS HA H N N 125 CYS HB2 H N N 126 CYS HB3 H N N 127 CYS HG H N N 128 CYS HXT H N N 129 GLN N N N N 130 GLN CA C N S 131 GLN C C N N 132 GLN O O N N 133 GLN CB C N N 134 GLN CG C N N 135 GLN CD C N N 136 GLN OE1 O N N 137 GLN NE2 N N N 138 GLN OXT O N N 139 GLN H H N N 140 GLN H2 H N N 141 GLN HA H N N 142 GLN HB2 H N N 143 GLN HB3 H N N 144 GLN HG2 H N N 145 GLN HG3 H N N 146 GLN HE21 H N N 147 GLN HE22 H N N 148 GLN HXT H N N 149 GLU N N N N 150 GLU CA C N S 151 GLU C C N N 152 GLU O O N N 153 GLU CB C N N 154 GLU CG C N N 155 GLU CD C N N 156 GLU OE1 O N N 157 GLU OE2 O N N 158 GLU OXT O N N 159 GLU H H N N 160 GLU H2 H N N 161 GLU HA H N N 162 GLU HB2 H N N 163 GLU HB3 H N N 164 GLU HG2 H N N 165 GLU HG3 H N N 166 GLU HE2 H N N 167 GLU HXT H N N 168 GLY N N N N 169 GLY CA C N N 170 GLY C C N N 171 GLY O O N N 172 GLY OXT O N N 173 GLY H H N N 174 GLY H2 H N N 175 GLY HA2 H N N 176 GLY HA3 H N N 177 GLY HXT H N N 178 HIS N N N N 179 HIS CA C N S 180 HIS C C N N 181 HIS O O N N 182 HIS CB C N N 183 HIS CG C Y N 184 HIS ND1 N Y N 185 HIS CD2 C Y N 186 HIS CE1 C Y N 187 HIS NE2 N Y N 188 HIS OXT O N N 189 HIS H H N N 190 HIS H2 H N N 191 HIS HA H N N 192 HIS HB2 H N N 193 HIS HB3 H N N 194 HIS HD1 H N N 195 HIS HD2 H N N 196 HIS HE1 H N N 197 HIS HE2 H N N 198 HIS HXT H N N 199 HOH O O N N 200 HOH H1 H N N 201 HOH H2 H N N 202 ILE N N N N 203 ILE CA C N S 204 ILE C C N N 205 ILE O O N N 206 ILE CB C N S 207 ILE CG1 C N N 208 ILE CG2 C N N 209 ILE CD1 C N N 210 ILE OXT O N N 211 ILE H H N N 212 ILE H2 H N N 213 ILE HA H N N 214 ILE HB H N N 215 ILE HG12 H N N 216 ILE HG13 H N N 217 ILE HG21 H N N 218 ILE HG22 H N N 219 ILE HG23 H N N 220 ILE HD11 H N N 221 ILE HD12 H N N 222 ILE HD13 H N N 223 ILE HXT H N N 224 LEU N N N N 225 LEU CA C N S 226 LEU C C N N 227 LEU O O N N 228 LEU CB C N N 229 LEU CG C N N 230 LEU CD1 C N N 231 LEU CD2 C N N 232 LEU OXT O N N 233 LEU H H N N 234 LEU H2 H N N 235 LEU HA H N N 236 LEU HB2 H N N 237 LEU HB3 H N N 238 LEU HG H N N 239 LEU HD11 H N N 240 LEU HD12 H N N 241 LEU HD13 H N N 242 LEU HD21 H N N 243 LEU HD22 H N N 244 LEU HD23 H N N 245 LEU HXT H N N 246 LYS N N N N 247 LYS CA C N S 248 LYS C C N N 249 LYS O O N N 250 LYS CB C N N 251 LYS CG C N N 252 LYS CD C N N 253 LYS CE C N N 254 LYS NZ N N N 255 LYS OXT O N N 256 LYS H H N N 257 LYS H2 H N N 258 LYS HA H N N 259 LYS HB2 H N N 260 LYS HB3 H N N 261 LYS HG2 H N N 262 LYS HG3 H N N 263 LYS HD2 H N N 264 LYS HD3 H N N 265 LYS HE2 H N N 266 LYS HE3 H N N 267 LYS HZ1 H N N 268 LYS HZ2 H N N 269 LYS HZ3 H N N 270 LYS HXT H N N 271 MET N N N N 272 MET CA C N S 273 MET C C N N 274 MET O O N N 275 MET CB C N N 276 MET CG C N N 277 MET SD S N N 278 MET CE C N N 279 MET OXT O N N 280 MET H H N N 281 MET H2 H N N 282 MET HA H N N 283 MET HB2 H N N 284 MET HB3 H N N 285 MET HG2 H N N 286 MET HG3 H N N 287 MET HE1 H N N 288 MET HE2 H N N 289 MET HE3 H N N 290 MET HXT H N N 291 MG MG MG N N 292 PHE N N N N 293 PHE CA C N S 294 PHE C C N N 295 PHE O O N N 296 PHE CB C N N 297 PHE CG C Y N 298 PHE CD1 C Y N 299 PHE CD2 C Y N 300 PHE CE1 C Y N 301 PHE CE2 C Y N 302 PHE CZ C Y N 303 PHE OXT O N N 304 PHE H H N N 305 PHE H2 H N N 306 PHE HA H N N 307 PHE HB2 H N N 308 PHE HB3 H N N 309 PHE HD1 H N N 310 PHE HD2 H N N 311 PHE HE1 H N N 312 PHE HE2 H N N 313 PHE HZ H N N 314 PHE HXT H N N 315 PRO N N N N 316 PRO CA C N S 317 PRO C C N N 318 PRO O O N N 319 PRO CB C N N 320 PRO CG C N N 321 PRO CD C N N 322 PRO OXT O N N 323 PRO H H N N 324 PRO HA H N N 325 PRO HB2 H N N 326 PRO HB3 H N N 327 PRO HG2 H N N 328 PRO HG3 H N N 329 PRO HD2 H N N 330 PRO HD3 H N N 331 PRO HXT H N N 332 SER N N N N 333 SER CA C N S 334 SER C C N N 335 SER O O N N 336 SER CB C N N 337 SER OG O N N 338 SER OXT O N N 339 SER H H N N 340 SER H2 H N N 341 SER HA H N N 342 SER HB2 H N N 343 SER HB3 H N N 344 SER HG H N N 345 SER HXT H N N 346 SO4 S S N N 347 SO4 O1 O N N 348 SO4 O2 O N N 349 SO4 O3 O N N 350 SO4 O4 O N N 351 THR N N N N 352 THR CA C N S 353 THR C C N N 354 THR O O N N 355 THR CB C N R 356 THR OG1 O N N 357 THR CG2 C N N 358 THR OXT O N N 359 THR H H N N 360 THR H2 H N N 361 THR HA H N N 362 THR HB H N N 363 THR HG1 H N N 364 THR HG21 H N N 365 THR HG22 H N N 366 THR HG23 H N N 367 THR HXT H N N 368 TRP N N N N 369 TRP CA C N S 370 TRP C C N N 371 TRP O O N N 372 TRP CB C N N 373 TRP CG C Y N 374 TRP CD1 C Y N 375 TRP CD2 C Y N 376 TRP NE1 N Y N 377 TRP CE2 C Y N 378 TRP CE3 C Y N 379 TRP CZ2 C Y N 380 TRP CZ3 C Y N 381 TRP CH2 C Y N 382 TRP OXT O N N 383 TRP H H N N 384 TRP H2 H N N 385 TRP HA H N N 386 TRP HB2 H N N 387 TRP HB3 H N N 388 TRP HD1 H N N 389 TRP HE1 H N N 390 TRP HE3 H N N 391 TRP HZ2 H N N 392 TRP HZ3 H N N 393 TRP HH2 H N N 394 TRP HXT H N N 395 TYR N N N N 396 TYR CA C N S 397 TYR C C N N 398 TYR O O N N 399 TYR CB C N N 400 TYR CG C Y N 401 TYR CD1 C Y N 402 TYR CD2 C Y N 403 TYR CE1 C Y N 404 TYR CE2 C Y N 405 TYR CZ C Y N 406 TYR OH O N N 407 TYR OXT O N N 408 TYR H H N N 409 TYR H2 H N N 410 TYR HA H N N 411 TYR HB2 H N N 412 TYR HB3 H N N 413 TYR HD1 H N N 414 TYR HD2 H N N 415 TYR HE1 H N N 416 TYR HE2 H N N 417 TYR HH H N N 418 TYR HXT H N N 419 VAL N N N N 420 VAL CA C N S 421 VAL C C N N 422 VAL O O N N 423 VAL CB C N N 424 VAL CG1 C N N 425 VAL CG2 C N N 426 VAL OXT O N N 427 VAL H H N N 428 VAL H2 H N N 429 VAL HA H N N 430 VAL HB H N N 431 VAL HG11 H N N 432 VAL HG12 H N N 433 VAL HG13 H N N 434 VAL HG21 H N N 435 VAL HG22 H N N 436 VAL HG23 H N N 437 VAL HXT H N N 438 ZN ZN ZN N N 439 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal 24E C21 C20 doub Y N 1 24E C21 C22 sing Y N 2 24E C20 C17 sing Y N 3 24E O3 C22 sing N N 4 24E C22 C19 doub Y N 5 24E C17 C16 sing N N 6 24E C17 C18 doub Y N 7 24E C16 C10 sing N N 8 24E C19 C18 sing Y N 9 24E C10 C9 doub Y N 10 24E C10 N1 sing Y N 11 24E O1 C9 sing N N 12 24E O1 C4 sing N N 13 24E C6 C4 doub Y N 14 24E C6 C5 sing Y N 15 24E C9 C8 sing Y N 16 24E N1 C11 sing Y N 17 24E C4 C2 sing Y N 18 24E C5 C3 doub Y N 19 24E C8 C11 doub Y N 20 24E C8 C7 sing N N 21 24E C11 C12 sing N N 22 24E C2 C7 sing N N 23 24E C2 C1 doub Y N 24 24E C3 C1 sing Y N 25 24E C7 O2 doub N N 26 24E C12 S1 sing Y N 27 24E C12 C13 doub Y N 28 24E S1 C15 sing Y N 29 24E C13 C14 sing Y N 30 24E C15 C14 doub Y N 31 24E C18 H1 sing N N 32 24E C19 H2 sing N N 33 24E O3 H3 sing N N 34 24E C21 H4 sing N N 35 24E C20 H5 sing N N 36 24E C16 H6 sing N N 37 24E C16 H7 sing N N 38 24E N1 H8 sing N N 39 24E C6 H9 sing N N 40 24E C5 H10 sing N N 41 24E C3 H11 sing N N 42 24E C1 H12 sing N N 43 24E C15 H13 sing N N 44 24E C14 H14 sing N N 45 24E C13 H15 sing N N 46 ALA N CA sing N N 47 ALA N H sing N N 48 ALA N H2 sing N N 49 ALA CA C sing N N 50 ALA CA CB sing N N 51 ALA CA HA sing N N 52 ALA C O doub N N 53 ALA C OXT sing N N 54 ALA CB HB1 sing N N 55 ALA CB HB2 sing N N 56 ALA CB HB3 sing N N 57 ALA OXT HXT sing N N 58 ARG N CA sing N N 59 ARG N H sing N N 60 ARG N H2 sing N N 61 ARG CA C sing N N 62 ARG CA CB sing N N 63 ARG CA HA sing N N 64 ARG C O doub N N 65 ARG C OXT sing N N 66 ARG CB CG sing N N 67 ARG CB HB2 sing N N 68 ARG CB HB3 sing N N 69 ARG CG CD sing N N 70 ARG CG HG2 sing N N 71 ARG CG HG3 sing N N 72 ARG CD NE sing N N 73 ARG CD HD2 sing N N 74 ARG CD HD3 sing N N 75 ARG NE CZ sing N N 76 ARG NE HE sing N N 77 ARG CZ NH1 sing N N 78 ARG CZ NH2 doub N N 79 ARG NH1 HH11 sing N N 80 ARG NH1 HH12 sing N N 81 ARG NH2 HH21 sing N N 82 ARG NH2 HH22 sing N N 83 ARG OXT HXT sing N N 84 ASN N CA sing N N 85 ASN N H sing N N 86 ASN N H2 sing N N 87 ASN CA C sing N N 88 ASN CA CB sing N N 89 ASN CA HA sing N N 90 ASN C O doub N N 91 ASN C OXT sing N N 92 ASN CB CG sing N N 93 ASN CB HB2 sing N N 94 ASN CB HB3 sing N N 95 ASN CG OD1 doub N N 96 ASN CG ND2 sing N N 97 ASN ND2 HD21 sing N N 98 ASN ND2 HD22 sing N N 99 ASN OXT HXT sing N N 100 ASP N CA sing N N 101 ASP N H sing N N 102 ASP N H2 sing N N 103 ASP CA C sing N N 104 ASP CA CB sing N N 105 ASP CA HA sing N N 106 ASP C O doub N N 107 ASP C OXT sing N N 108 ASP CB CG sing N N 109 ASP CB HB2 sing N N 110 ASP CB HB3 sing N N 111 ASP CG OD1 doub N N 112 ASP CG OD2 sing N N 113 ASP OD2 HD2 sing N N 114 ASP OXT HXT sing N N 115 CYS N CA sing N N 116 CYS N H sing N N 117 CYS N H2 sing N N 118 CYS CA C sing N N 119 CYS CA CB sing N N 120 CYS CA HA sing N N 121 CYS C O doub N N 122 CYS C OXT sing N N 123 CYS CB SG sing N N 124 CYS CB HB2 sing N N 125 CYS CB HB3 sing N N 126 CYS SG HG sing N N 127 CYS OXT HXT sing N N 128 GLN N CA sing N N 129 GLN N H sing N N 130 GLN N H2 sing N N 131 GLN CA C sing N N 132 GLN CA CB sing N N 133 GLN CA HA sing N N 134 GLN C O doub N N 135 GLN C OXT sing N N 136 GLN CB CG sing N N 137 GLN CB HB2 sing N N 138 GLN CB HB3 sing N N 139 GLN CG CD sing N N 140 GLN CG HG2 sing N N 141 GLN CG HG3 sing N N 142 GLN CD OE1 doub N N 143 GLN CD NE2 sing N N 144 GLN NE2 HE21 sing N N 145 GLN NE2 HE22 sing N N 146 GLN OXT HXT sing N N 147 GLU N CA sing N N 148 GLU N H sing N N 149 GLU N H2 sing N N 150 GLU CA C sing N N 151 GLU CA CB sing N N 152 GLU CA HA sing N N 153 GLU C O doub N N 154 GLU C OXT sing N N 155 GLU CB CG sing N N 156 GLU CB HB2 sing N N 157 GLU CB HB3 sing N N 158 GLU CG CD sing N N 159 GLU CG HG2 sing N N 160 GLU CG HG3 sing N N 161 GLU CD OE1 doub N N 162 GLU CD OE2 sing N N 163 GLU OE2 HE2 sing N N 164 GLU OXT HXT sing N N 165 GLY N CA sing N N 166 GLY N H sing N N 167 GLY N H2 sing N N 168 GLY CA C sing N N 169 GLY CA HA2 sing N N 170 GLY CA HA3 sing N N 171 GLY C O doub N N 172 GLY C OXT sing N N 173 GLY OXT HXT sing N N 174 HIS N CA sing N N 175 HIS N H sing N N 176 HIS N H2 sing N N 177 HIS CA C sing N N 178 HIS CA CB sing N N 179 HIS CA HA sing N N 180 HIS C O doub N N 181 HIS C OXT sing N N 182 HIS CB CG sing N N 183 HIS CB HB2 sing N N 184 HIS CB HB3 sing N N 185 HIS CG ND1 sing Y N 186 HIS CG CD2 doub Y N 187 HIS ND1 CE1 doub Y N 188 HIS ND1 HD1 sing N N 189 HIS CD2 NE2 sing Y N 190 HIS CD2 HD2 sing N N 191 HIS CE1 NE2 sing Y N 192 HIS CE1 HE1 sing N N 193 HIS NE2 HE2 sing N N 194 HIS OXT HXT sing N N 195 HOH O H1 sing N N 196 HOH O H2 sing N N 197 ILE N CA sing N N 198 ILE N H sing N N 199 ILE N H2 sing N N 200 ILE CA C sing N N 201 ILE CA CB sing N N 202 ILE CA HA sing N N 203 ILE C O doub N N 204 ILE C OXT sing N N 205 ILE CB CG1 sing N N 206 ILE CB CG2 sing N N 207 ILE CB HB sing N N 208 ILE CG1 CD1 sing N N 209 ILE CG1 HG12 sing N N 210 ILE CG1 HG13 sing N N 211 ILE CG2 HG21 sing N N 212 ILE CG2 HG22 sing N N 213 ILE CG2 HG23 sing N N 214 ILE CD1 HD11 sing N N 215 ILE CD1 HD12 sing N N 216 ILE CD1 HD13 sing N N 217 ILE OXT HXT sing N N 218 LEU N CA sing N N 219 LEU N H sing N N 220 LEU N H2 sing N N 221 LEU CA C sing N N 222 LEU CA CB sing N N 223 LEU CA HA sing N N 224 LEU C O doub N N 225 LEU C OXT sing N N 226 LEU CB CG sing N N 227 LEU CB HB2 sing N N 228 LEU CB HB3 sing N N 229 LEU CG CD1 sing N N 230 LEU CG CD2 sing N N 231 LEU CG HG sing N N 232 LEU CD1 HD11 sing N N 233 LEU CD1 HD12 sing N N 234 LEU CD1 HD13 sing N N 235 LEU CD2 HD21 sing N N 236 LEU CD2 HD22 sing N N 237 LEU CD2 HD23 sing N N 238 LEU OXT HXT sing N N 239 LYS N CA sing N N 240 LYS N H sing N N 241 LYS N H2 sing N N 242 LYS CA C sing N N 243 LYS CA CB sing N N 244 LYS CA HA sing N N 245 LYS C O doub N N 246 LYS C OXT sing N N 247 LYS CB CG sing N N 248 LYS CB HB2 sing N N 249 LYS CB HB3 sing N N 250 LYS CG CD sing N N 251 LYS CG HG2 sing N N 252 LYS CG HG3 sing N N 253 LYS CD CE sing N N 254 LYS CD HD2 sing N N 255 LYS CD HD3 sing N N 256 LYS CE NZ sing N N 257 LYS CE HE2 sing N N 258 LYS CE HE3 sing N N 259 LYS NZ HZ1 sing N N 260 LYS NZ HZ2 sing N N 261 LYS NZ HZ3 sing N N 262 LYS OXT HXT sing N N 263 MET N CA sing N N 264 MET N H sing N N 265 MET N H2 sing N N 266 MET CA C sing N N 267 MET CA CB sing N N 268 MET CA HA sing N N 269 MET C O doub N N 270 MET C OXT sing N N 271 MET CB CG sing N N 272 MET CB HB2 sing N N 273 MET CB HB3 sing N N 274 MET CG SD sing N N 275 MET CG HG2 sing N N 276 MET CG HG3 sing N N 277 MET SD CE sing N N 278 MET CE HE1 sing N N 279 MET CE HE2 sing N N 280 MET CE HE3 sing N N 281 MET OXT HXT sing N N 282 PHE N CA sing N N 283 PHE N H sing N N 284 PHE N H2 sing N N 285 PHE CA C sing N N 286 PHE CA CB sing N N 287 PHE CA HA sing N N 288 PHE C O doub N N 289 PHE C OXT sing N N 290 PHE CB CG sing N N 291 PHE CB HB2 sing N N 292 PHE CB HB3 sing N N 293 PHE CG CD1 doub Y N 294 PHE CG CD2 sing Y N 295 PHE CD1 CE1 sing Y N 296 PHE CD1 HD1 sing N N 297 PHE CD2 CE2 doub Y N 298 PHE CD2 HD2 sing N N 299 PHE CE1 CZ doub Y N 300 PHE CE1 HE1 sing N N 301 PHE CE2 CZ sing Y N 302 PHE CE2 HE2 sing N N 303 PHE CZ HZ sing N N 304 PHE OXT HXT sing N N 305 PRO N CA sing N N 306 PRO N CD sing N N 307 PRO N H sing N N 308 PRO CA C sing N N 309 PRO CA CB sing N N 310 PRO CA HA sing N N 311 PRO C O doub N N 312 PRO C OXT sing N N 313 PRO CB CG sing N N 314 PRO CB HB2 sing N N 315 PRO CB HB3 sing N N 316 PRO CG CD sing N N 317 PRO CG HG2 sing N N 318 PRO CG HG3 sing N N 319 PRO CD HD2 sing N N 320 PRO CD HD3 sing N N 321 PRO OXT HXT sing N N 322 SER N CA sing N N 323 SER N H sing N N 324 SER N H2 sing N N 325 SER CA C sing N N 326 SER CA CB sing N N 327 SER CA HA sing N N 328 SER C O doub N N 329 SER C OXT sing N N 330 SER CB OG sing N N 331 SER CB HB2 sing N N 332 SER CB HB3 sing N N 333 SER OG HG sing N N 334 SER OXT HXT sing N N 335 SO4 S O1 doub N N 336 SO4 S O2 doub N N 337 SO4 S O3 sing N N 338 SO4 S O4 sing N N 339 THR N CA sing N N 340 THR N H sing N N 341 THR N H2 sing N N 342 THR CA C sing N N 343 THR CA CB sing N N 344 THR CA HA sing N N 345 THR C O doub N N 346 THR C OXT sing N N 347 THR CB OG1 sing N N 348 THR CB CG2 sing N N 349 THR CB HB sing N N 350 THR OG1 HG1 sing N N 351 THR CG2 HG21 sing N N 352 THR CG2 HG22 sing N N 353 THR CG2 HG23 sing N N 354 THR OXT HXT sing N N 355 TRP N CA sing N N 356 TRP N H sing N N 357 TRP N H2 sing N N 358 TRP CA C sing N N 359 TRP CA CB sing N N 360 TRP CA HA sing N N 361 TRP C O doub N N 362 TRP C OXT sing N N 363 TRP CB CG sing N N 364 TRP CB HB2 sing N N 365 TRP CB HB3 sing N N 366 TRP CG CD1 doub Y N 367 TRP CG CD2 sing Y N 368 TRP CD1 NE1 sing Y N 369 TRP CD1 HD1 sing N N 370 TRP CD2 CE2 doub Y N 371 TRP CD2 CE3 sing Y N 372 TRP NE1 CE2 sing Y N 373 TRP NE1 HE1 sing N N 374 TRP CE2 CZ2 sing Y N 375 TRP CE3 CZ3 doub Y N 376 TRP CE3 HE3 sing N N 377 TRP CZ2 CH2 doub Y N 378 TRP CZ2 HZ2 sing N N 379 TRP CZ3 CH2 sing Y N 380 TRP CZ3 HZ3 sing N N 381 TRP CH2 HH2 sing N N 382 TRP OXT HXT sing N N 383 TYR N CA sing N N 384 TYR N H sing N N 385 TYR N H2 sing N N 386 TYR CA C sing N N 387 TYR CA CB sing N N 388 TYR CA HA sing N N 389 TYR C O doub N N 390 TYR C OXT sing N N 391 TYR CB CG sing N N 392 TYR CB HB2 sing N N 393 TYR CB HB3 sing N N 394 TYR CG CD1 doub Y N 395 TYR CG CD2 sing Y N 396 TYR CD1 CE1 sing Y N 397 TYR CD1 HD1 sing N N 398 TYR CD2 CE2 doub Y N 399 TYR CD2 HD2 sing N N 400 TYR CE1 CZ doub Y N 401 TYR CE1 HE1 sing N N 402 TYR CE2 CZ sing Y N 403 TYR CE2 HE2 sing N N 404 TYR CZ OH sing N N 405 TYR OH HH sing N N 406 TYR OXT HXT sing N N 407 VAL N CA sing N N 408 VAL N H sing N N 409 VAL N H2 sing N N 410 VAL CA C sing N N 411 VAL CA CB sing N N 412 VAL CA HA sing N N 413 VAL C O doub N N 414 VAL C OXT sing N N 415 VAL CB CG1 sing N N 416 VAL CB CG2 sing N N 417 VAL CB HB sing N N 418 VAL CG1 HG11 sing N N 419 VAL CG1 HG12 sing N N 420 VAL CG1 HG13 sing N N 421 VAL CG2 HG21 sing N N 422 VAL CG2 HG22 sing N N 423 VAL CG2 HG23 sing N N 424 VAL OXT HXT sing N N 425 # _atom_sites.entry_id 4MD6 _atom_sites.fract_transf_matrix[1][1] 0.013494 _atom_sites.fract_transf_matrix[1][2] 0.007791 _atom_sites.fract_transf_matrix[1][3] -0.000000 _atom_sites.fract_transf_matrix[2][1] -0.000000 _atom_sites.fract_transf_matrix[2][2] 0.015582 _atom_sites.fract_transf_matrix[2][3] -0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] -0.000000 _atom_sites.fract_transf_matrix[3][3] 0.007556 _atom_sites.fract_transf_vector[1] -0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] -0.00000 # loop_ _atom_type.symbol C MG N O S ZN # loop_