HEADER HYDROLASE/HYDROLASE INHIBITOR 22-AUG-13 4MDB
TITLE STRUCTURE OF MOS1 TRANSPOSASE CATALYTIC DOMAIN AND RALTEGRAVIR WITH MG
COMPND MOL_ID: 1;
COMPND 2 MOLECULE: MARINER MOS1 TRANSPOSASE;
COMPND 3 CHAIN: A;
COMPND 4 FRAGMENT: CATALYTIC DOMAIN (UNP RESIDUES 121-345);
COMPND 5 SYNONYM: MOS1 DNA TRANSPOSASE, TRANSPOSABLE ELEMENT MOS1 TRANSPOSASE;
COMPND 6 EC: 3.1.-.-;
COMPND 7 ENGINEERED: YES;
COMPND 8 MUTATION: YES
SOURCE MOL_ID: 1;
SOURCE 2 ORGANISM_SCIENTIFIC: DROSOPHILA MAURITIANA;
SOURCE 3 ORGANISM_COMMON: FRUIT FLY;
SOURCE 4 ORGANISM_TAXID: 7226;
SOURCE 5 GENE: MARINER\T;
SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI;
SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562
KEYWDS RNASE-H FOLD, DDD MOTIF, RECOMBINASE, DNA TRANSPOSITION, DNA
KEYWDS 2 INTEGRATION, TRANSPOSON DNA, HYDROLASE-HYDROLASE INHIBITOR COMPLEX
EXPDTA X-RAY DIFFRACTION
AUTHOR J.M.RICHARDSON
REVDAT 5 20-SEP-23 4MDB 1 COMPND REMARK SEQADV HETNAM
REVDAT 5 2 1 LINK
REVDAT 4 07-MAY-14 4MDB 1 REMARK
REVDAT 3 02-APR-14 4MDB 1 JRNL
REVDAT 2 05-FEB-14 4MDB 1 JRNL
REVDAT 1 22-JAN-14 4MDB 0
JRNL AUTH U.M.WOLKOWICZ,E.R.MORRIS,M.ROBSON,M.TRUBITSYNA,
JRNL AUTH 2 J.M.RICHARDSON
JRNL TITL STRUCTURAL BASIS OF MOS1 TRANSPOSASE INHIBITION BY THE
JRNL TITL 2 ANTI-RETROVIRAL DRUG RALTEGRAVIR.
JRNL REF ACS CHEM.BIOL. V. 9 743 2014
JRNL REFN ISSN 1554-8929
JRNL PMID 24397848
JRNL DOI 10.1021/CB400791U
REMARK 2
REMARK 2 RESOLUTION. 1.70 ANGSTROMS.
REMARK 3
REMARK 3 REFINEMENT.
REMARK 3 PROGRAM : REFMAC 5.7.0032
REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER,
REMARK 3 : NICHOLLS,WINN,LONG,VAGIN
REMARK 3
REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD
REMARK 3
REMARK 3 DATA USED IN REFINEMENT.
REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.70
REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 43.29
REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL
REMARK 3 COMPLETENESS FOR RANGE (%) : 99.5
REMARK 3 NUMBER OF REFLECTIONS : 22263
REMARK 3
REMARK 3 FIT TO DATA USED IN REFINEMENT.
REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT
REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM
REMARK 3 R VALUE (WORKING + TEST SET) : 0.199
REMARK 3 R VALUE (WORKING SET) : 0.197
REMARK 3 FREE R VALUE : 0.241
REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100
REMARK 3 FREE R VALUE TEST SET COUNT : 1198
REMARK 3
REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN.
REMARK 3 TOTAL NUMBER OF BINS USED : 20
REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.70
REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.75
REMARK 3 REFLECTION IN BIN (WORKING SET) : 1586
REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.88
REMARK 3 BIN R VALUE (WORKING SET) : 0.2540
REMARK 3 BIN FREE R VALUE SET COUNT : 83
REMARK 3 BIN FREE R VALUE : 0.3410
REMARK 3
REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT.
REMARK 3 PROTEIN ATOMS : 1711
REMARK 3 NUCLEIC ACID ATOMS : 0
REMARK 3 HETEROGEN ATOMS : 34
REMARK 3 SOLVENT ATOMS : 106
REMARK 3
REMARK 3 B VALUES.
REMARK 3 FROM WILSON PLOT (A**2) : NULL
REMARK 3 MEAN B VALUE (OVERALL, A**2) : 25.69
REMARK 3 OVERALL ANISOTROPIC B VALUE.
REMARK 3 B11 (A**2) : -0.55000
REMARK 3 B22 (A**2) : -0.55000
REMARK 3 B33 (A**2) : 1.09000
REMARK 3 B12 (A**2) : 0.00000
REMARK 3 B13 (A**2) : 0.00000
REMARK 3 B23 (A**2) : 0.00000
REMARK 3
REMARK 3 ESTIMATED OVERALL COORDINATE ERROR.
REMARK 3 ESU BASED ON R VALUE (A): 0.121
REMARK 3 ESU BASED ON FREE R VALUE (A): 0.121
REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.084
REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 2.483
REMARK 3
REMARK 3 CORRELATION COEFFICIENTS.
REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.952
REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.933
REMARK 3
REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT
REMARK 3 BOND LENGTHS REFINED ATOMS (A): 1811 ; 0.019 ; 0.019
REMARK 3 BOND LENGTHS OTHERS (A): 1682 ; 0.001 ; 0.020
REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 2452 ; 2.090 ; 1.946
REMARK 3 BOND ANGLES OTHERS (DEGREES): 3851 ; 0.919 ; 3.000
REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 203 ; 5.799 ; 5.000
REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 97 ;36.906 ;22.784
REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 315 ;15.896 ;15.000
REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 17 ;15.525 ;15.000
REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 241 ; 0.233 ; 0.200
REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2042 ; 0.010 ; 0.020
REMARK 3 GENERAL PLANES OTHERS (A): 473 ; 0.001 ; 0.020
REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL
REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL
REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL
REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL
REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL
REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL
REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL
REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL
REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL
REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL
REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL
REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL
REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL
REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL
REMARK 3
REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT
REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 812 ; 2.638 ; 2.247
REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 811 ; 2.633 ; 2.243
REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1014 ; 4.018 ; 3.341
REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL
REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 999 ; 3.417 ; 2.720
REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL
REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL
REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL
REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL
REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL
REMARK 3
REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT
REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL
REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL
REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL
REMARK 3
REMARK 3 NCS RESTRAINTS STATISTICS
REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL
REMARK 3
REMARK 3 TLS DETAILS
REMARK 3 NUMBER OF TLS GROUPS : NULL
REMARK 3
REMARK 3 BULK SOLVENT MODELLING.
REMARK 3 METHOD USED : MASK
REMARK 3 PARAMETERS FOR MASK CALCULATION
REMARK 3 VDW PROBE RADIUS : 1.20
REMARK 3 ION PROBE RADIUS : 0.80
REMARK 3 SHRINKAGE RADIUS : 0.80
REMARK 3
REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING
REMARK 3 POSITIONS
REMARK 4
REMARK 4 4MDB COMPLIES WITH FORMAT V. 3.30, 13-JUL-11
REMARK 100
REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 29-AUG-13.
REMARK 100 THE DEPOSITION ID IS D_1000081767.
REMARK 200
REMARK 200 EXPERIMENTAL DETAILS
REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION
REMARK 200 DATE OF DATA COLLECTION : 12-FEB-11
REMARK 200 TEMPERATURE (KELVIN) : 100
REMARK 200 PH : 6.8
REMARK 200 NUMBER OF CRYSTALS USED : 1
REMARK 200
REMARK 200 SYNCHROTRON (Y/N) : Y
REMARK 200 RADIATION SOURCE : DIAMOND
REMARK 200 BEAMLINE : I02
REMARK 200 X-RAY GENERATOR MODEL : NULL
REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M
REMARK 200 WAVELENGTH OR RANGE (A) : 0.9795
REMARK 200 MONOCHROMATOR : DOUBLE CRYSTAL SI(111)
REMARK 200 OPTICS : NULL
REMARK 200
REMARK 200 DETECTOR TYPE : PIXEL
REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M
REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM
REMARK 200 DATA SCALING SOFTWARE : SCALA
REMARK 200
REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 23539
REMARK 200 RESOLUTION RANGE HIGH (A) : 1.700
REMARK 200 RESOLUTION RANGE LOW (A) : 44.200
REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000
REMARK 200
REMARK 200 OVERALL.
REMARK 200 COMPLETENESS FOR RANGE (%) : 99.7
REMARK 200 DATA REDUNDANCY : 5.500
REMARK 200 R MERGE (I) : 0.06500
REMARK 200 R SYM (I) : NULL
REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 14.5000
REMARK 200
REMARK 200 IN THE HIGHEST RESOLUTION SHELL.
REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.70
REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.80
REMARK 200 COMPLETENESS FOR SHELL (%) : 99.9
REMARK 200 DATA REDUNDANCY IN SHELL : NULL
REMARK 200 R MERGE FOR SHELL (I) : 0.30200
REMARK 200 R SYM FOR SHELL (I) : NULL
REMARK 200 <I/SIGMA(I)> FOR SHELL : 4.700
REMARK 200
REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH
REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT
REMARK 200 SOFTWARE USED: PHASER
REMARK 200 STARTING MODEL: PDB ENTRY 2F7T
REMARK 200
REMARK 200 REMARK: NULL
REMARK 280
REMARK 280 CRYSTAL
REMARK 280 SOLVENT CONTENT, VS (%): 34.46
REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 1.88
REMARK 280
REMARK 280 CRYSTALLIZATION CONDITIONS: 22% W/V PEG4000, 100 MM TRIS, PH 6.8,
REMARK 280 5 MM MAGNESIUM CHLORIDE, VAPOR DIFFUSION, HANGING DROP,
REMARK 280 TEMPERATURE 290K
REMARK 290
REMARK 290 CRYSTALLOGRAPHIC SYMMETRY
REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 41 21 2
REMARK 290
REMARK 290 SYMOP SYMMETRY
REMARK 290 NNNMMM OPERATOR
REMARK 290 1555 X,Y,Z
REMARK 290 2555 -X,-Y,Z+1/2
REMARK 290 3555 -Y+1/2,X+1/2,Z+1/4
REMARK 290 4555 Y+1/2,-X+1/2,Z+3/4
REMARK 290 5555 -X+1/2,Y+1/2,-Z+1/4
REMARK 290 6555 X+1/2,-Y+1/2,-Z+3/4
REMARK 290 7555 Y,X,-Z
REMARK 290 8555 -Y,-X,-Z+1/2
REMARK 290
REMARK 290 WHERE NNN -> OPERATOR NUMBER
REMARK 290 MMM -> TRANSLATION VECTOR
REMARK 290
REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS
REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM
REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY
REMARK 290 RELATED MOLECULES.
REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000
REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000
REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000
REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000
REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000
REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 103.14000
REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 22.12000
REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 22.12000
REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 51.57000
REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 22.12000
REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 22.12000
REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 154.71000
REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 22.12000
REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 22.12000
REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 51.57000
REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 22.12000
REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 22.12000
REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 154.71000
REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000
REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000
REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000
REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000
REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000
REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 103.14000
REMARK 290
REMARK 290 REMARK: NULL
REMARK 300
REMARK 300 BIOMOLECULE: 1
REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM
REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN
REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON
REMARK 300 BURIED SURFACE AREA.
REMARK 350
REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN
REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE
REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS
REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND
REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN.
REMARK 350
REMARK 350 BIOMOLECULE: 1
REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC
REMARK 350 SOFTWARE USED: PISA
REMARK 350 APPLY THE FOLLOWING TO CHAINS: A
REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000
REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000
REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000
REMARK 465
REMARK 465 MISSING RESIDUES
REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE
REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN
REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.)
REMARK 465
REMARK 465 M RES C SSSEQI
REMARK 465 PRO A 121
REMARK 465 PRO A 165
REMARK 465 LYS A 166
REMARK 465 ARG A 167
REMARK 465 LYS A 168
REMARK 465 LYS A 169
REMARK 465 SER A 170
REMARK 465 TYR A 171
REMARK 465 VAL A 172
REMARK 465 ASP A 173
REMARK 465 PRO A 174
REMARK 465 GLY A 175
REMARK 465 GLN A 176
REMARK 465 PRO A 177
REMARK 465 ALA A 178
REMARK 465 THR A 179
REMARK 465 SER A 180
REMARK 465 THR A 181
REMARK 465 ALA A 182
REMARK 465 ARG A 183
REMARK 465 PRO A 184
REMARK 465 ASN A 185
REMARK 465 ARG A 186
REMARK 465 PHE A 187
REMARK 500
REMARK 500 GEOMETRY AND STEREOCHEMISTRY
REMARK 500 SUBTOPIC: COVALENT BOND ANGLES
REMARK 500
REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES
REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE
REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN
REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE).
REMARK 500
REMARK 500 STANDARD TABLE:
REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1)
REMARK 500
REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999
REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996
REMARK 500
REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3
REMARK 500 ASP A 156 CB - CG - OD2 ANGL. DEV. = -5.7 DEGREES
REMARK 500
REMARK 500 REMARK: NULL
REMARK 620
REMARK 620 METAL COORDINATION
REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER;
REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE):
REMARK 620
REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL
REMARK 620 MG A 402 MG
REMARK 620 N RES CSSEQI ATOM
REMARK 620 1 ASP A 156 OD2
REMARK 620 2 ASP A 284 OD1 97.5
REMARK 620 3 ASP A 284 OD2 92.8 59.3
REMARK 620 4 RLT A 401 OAH 96.4 155.5 99.9
REMARK 620 5 RLT A 401 OAG 173.6 84.4 82.8 79.8
REMARK 620 6 HOH A 533 O 92.9 98.6 157.8 100.7 92.8
REMARK 620 N 1 2 3 4 5
REMARK 620
REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL
REMARK 620 MG A 403 MG
REMARK 620 N RES CSSEQI ATOM
REMARK 620 1 ASP A 156 OD1
REMARK 620 2 ASP A 249 OD2 87.6
REMARK 620 3 RLT A 401 OAE 173.5 87.7
REMARK 620 4 RLT A 401 OAH 99.7 96.5 85.3
REMARK 620 5 HOH A 546 O 90.9 174.7 93.3 88.8
REMARK 620 6 HOH A 549 O 90.2 89.4 85.2 168.6 85.5
REMARK 620 N 1 2 3 4 5
REMARK 800
REMARK 800 SITE
REMARK 800 SITE_IDENTIFIER: AC1
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE RLT A 401
REMARK 800
REMARK 800 SITE_IDENTIFIER: AC2
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 402
REMARK 800
REMARK 800 SITE_IDENTIFIER: AC3
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 403
REMARK 900
REMARK 900 RELATED ENTRIES
REMARK 900 RELATED ID: 4MDA RELATED DB: PDB
REMARK 900 CO-CRYSTAL STRUCTURE OF MOS1 TRANSPOSASE AND RALTEGRAVIR WITH MN
REMARK 900 RELATED ID: 2F7T RELATED DB: PDB
REMARK 900 MOS1 CATALYTIC DOMAIN STRUCTURE
REMARK 900 RELATED ID: 3HOS RELATED DB: PDB
REMARK 900 MOS1 TRANSPOSASE PAIRED-END COMPLEX WITH DNA AND MG
REMARK 900 RELATED ID: 3HOT RELATED DB: PDB
REMARK 900 MOS1 TRANSPOSASE PAIRED-END COMPLEX WITH DNA AND MN
DBREF 4MDB A 121 345 UNP Q7JQ07 MOS1T_DROMA 121 345
SEQADV 4MDB ASN A 164 UNP Q7JQ07 SER 164 CONFLICT
SEQADV 4MDB PRO A 210 UNP Q7JQ07 ARG 210 CONFLICT
SEQADV 4MDB ALA A 216 UNP Q7JQ07 THR 216 ENGINEERED MUTATION
SEQADV 4MDB PHE A 344 UNP Q7JQ07 LEU 344 CONFLICT
SEQRES 1 A 225 PRO HIS GLU LEU ASN GLU ARG GLN MET GLU ARG ARG LYS
SEQRES 2 A 225 ASN THR CYS GLU ILE LEU LEU SER ARG TYR LYS ARG LYS
SEQRES 3 A 225 SER PHE LEU HIS ARG ILE VAL THR GLY ASP GLU LYS TRP
SEQRES 4 A 225 ILE PHE PHE VAL ASN PRO LYS ARG LYS LYS SER TYR VAL
SEQRES 5 A 225 ASP PRO GLY GLN PRO ALA THR SER THR ALA ARG PRO ASN
SEQRES 6 A 225 ARG PHE GLY LYS LYS THR MET LEU CYS VAL TRP TRP ASP
SEQRES 7 A 225 GLN SER GLY VAL ILE TYR TYR GLU LEU LEU LYS PRO GLY
SEQRES 8 A 225 GLU THR VAL ASN ALA ALA ARG TYR GLN GLN GLN LEU ILE
SEQRES 9 A 225 ASN LEU ASN ARG ALA LEU GLN ARG LYS ARG PRO GLU TYR
SEQRES 10 A 225 GLN LYS ARG GLN HIS ARG VAL ILE PHE LEU HIS ASP ASN
SEQRES 11 A 225 ALA PRO SER HIS THR ALA ARG ALA VAL ARG ASP THR LEU
SEQRES 12 A 225 GLU THR LEU ASN TRP GLU VAL LEU PRO HIS ALA ALA TYR
SEQRES 13 A 225 SER PRO ASP LEU ALA PRO SER ASP TYR HIS LEU PHE ALA
SEQRES 14 A 225 SER MET GLY HIS ALA LEU ALA GLU GLN ARG PHE ASP SER
SEQRES 15 A 225 TYR GLU SER VAL LYS LYS TRP LEU ASP GLU TRP PHE ALA
SEQRES 16 A 225 ALA LYS ASP ASP GLU PHE TYR TRP ARG GLY ILE HIS LYS
SEQRES 17 A 225 LEU PRO GLU ARG TRP GLU LYS CYS VAL ALA SER ASP GLY
SEQRES 18 A 225 LYS TYR PHE GLU
HET RLT A 401 32
HET MG A 402 1
HET MG A 403 1
HETNAM RLT N-(4-FLUOROBENZYL)-5-HYDROXY-1-METHYL-2-(1-METHYL-1-
HETNAM 2 RLT {[(5-METHYL-1,3,4-OXADIAZOL-2-YL)
HETNAM 3 RLT CARBONYL]AMINO}ETHYL)-6-OXO-1,6-DI HYDROPYRIMIDINE-4-
HETNAM 4 RLT CARBOXAMIDE
HETNAM MG MAGNESIUM ION
HETSYN RLT RALTEGRAVIR, MK0518
FORMUL 2 RLT C20 H21 F N6 O5
FORMUL 3 MG 2(MG 2+)
FORMUL 5 HOH *106(H2 O)
HELIX 1 1 ASN A 125 LYS A 146 1 22
HELIX 2 2 PHE A 148 HIS A 150 5 3
HELIX 3 3 ASN A 215 ARG A 234 1 20
HELIX 4 4 ARG A 234 LYS A 239 1 6
HELIX 5 5 ALA A 251 ALA A 256 1 6
HELIX 6 6 ALA A 256 ASN A 267 1 12
HELIX 7 7 SER A 277 LEU A 280 5 4
HELIX 8 8 ALA A 281 HIS A 286 1 6
HELIX 9 9 HIS A 286 ALA A 296 1 11
HELIX 10 10 SER A 302 LYS A 317 1 16
HELIX 11 11 ASP A 318 LYS A 328 1 11
HELIX 12 12 LYS A 328 SER A 339 1 12
SHEET 1 A 5 GLY A 201 LEU A 207 0
SHEET 2 A 5 LYS A 189 ASP A 198 -1 N CYS A 194 O GLU A 206
SHEET 3 A 5 ILE A 152 PHE A 162 -1 N LYS A 158 O LEU A 193
SHEET 4 A 5 ILE A 245 LEU A 247 1 O LEU A 247 N VAL A 153
SHEET 5 A 5 GLU A 269 VAL A 270 1 O GLU A 269 N PHE A 246
LINK OD2 ASP A 156 MG MG A 402 1555 1555 1.94
LINK OD1 ASP A 156 MG MG A 403 1555 1555 2.08
LINK OD2 ASP A 249 MG MG A 403 1555 1555 2.08
LINK OD1 ASP A 284 MG MG A 402 1555 1555 2.08
LINK OD2 ASP A 284 MG MG A 402 1555 1555 2.27
LINK OAH RLT A 401 MG MG A 402 1555 1555 2.05
LINK OAG RLT A 401 MG MG A 402 1555 1555 2.12
LINK OAE RLT A 401 MG MG A 403 1555 1555 2.05
LINK OAH RLT A 401 MG MG A 403 1555 1555 2.11
LINK MG MG A 402 O HOH A 533 1555 1555 2.05
LINK MG MG A 403 O HOH A 546 1555 1555 2.10
LINK MG MG A 403 O HOH A 549 1555 1555 2.08
SITE 1 AC1 16 ASP A 156 ASP A 249 ASN A 250 ALA A 251
SITE 2 AC1 16 ALA A 275 TYR A 276 ASP A 284 SER A 302
SITE 3 AC1 16 GLU A 304 SER A 305 LYS A 308 MG A 402
SITE 4 AC1 16 MG A 403 HOH A 533 HOH A 546 HOH A 549
SITE 1 AC2 5 ASP A 156 ASP A 284 RLT A 401 MG A 403
SITE 2 AC2 5 HOH A 533
SITE 1 AC3 6 ASP A 156 ASP A 249 RLT A 401 MG A 402
SITE 2 AC3 6 HOH A 546 HOH A 549
CRYST1 44.240 44.240 206.280 90.00 90.00 90.00 P 41 21 2 8
ORIGX1 1.000000 0.000000 0.000000 0.00000
ORIGX2 0.000000 1.000000 0.000000 0.00000
ORIGX3 0.000000 0.000000 1.000000 0.00000
SCALE1 0.022604 0.000000 0.000000 0.00000
SCALE2 0.000000 0.022604 0.000000 0.00000
SCALE3 0.000000 0.000000 0.004848 0.00000