HEADER IMMUNE SYSTEM 22-AUG-13 4MDJ TITLE IMMUNE RECEPTOR COMPND MOL_ID: 1; COMPND 2 MOLECULE: HLA CLASS II HISTOCOMPATIBILITY ANTIGEN, DR ALPHA CHAIN; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: EXTRACELLULAR DOMAIN, UNP RESIDUES 26-206; COMPND 5 SYNONYM: MHC CLASS II ANTIGEN DRA; COMPND 6 ENGINEERED: YES; COMPND 7 MOL_ID: 2; COMPND 8 MOLECULE: HLA CLASS II HISTOCOMPATIBILITY ANTIGEN, DRB1-4 BETA CHAIN; COMPND 9 CHAIN: B; COMPND 10 FRAGMENT: EXTRACELLULAR DOMAIN, UNP RESIDUES 30-219; COMPND 11 SYNONYM: MHC CLASS II ANTIGEN DRB1*4, DR-4, DR4; COMPND 12 ENGINEERED: YES; COMPND 13 MOL_ID: 3; COMPND 14 MOLECULE: VIMENTIN; COMPND 15 CHAIN: C; COMPND 16 FRAGMENT: RESIDUES 66-78; COMPND 17 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: HLA-DRA, HLA-DRA1; SOURCE 6 EXPRESSION_SYSTEM: HOMO SAPIENS; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 9606; SOURCE 8 MOL_ID: 2; SOURCE 9 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 10 ORGANISM_COMMON: HUMAN; SOURCE 11 ORGANISM_TAXID: 9606; SOURCE 12 GENE: HLA-DRB1; SOURCE 13 EXPRESSION_SYSTEM: HOMO SAPIENS; SOURCE 14 EXPRESSION_SYSTEM_TAXID: 9606; SOURCE 15 MOL_ID: 3; SOURCE 16 SYNTHETIC: YES; SOURCE 17 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 18 ORGANISM_TAXID: 9606; SOURCE 19 OTHER_DETAILS: THIS SEQUENCE IS FROM HUMAN VIMENTIN KEYWDS HLA-DR, ANTIGEN PRESENTATION, T-CELL RECEPTOR, MEMBRANE, IMMUNE KEYWDS 2 SYSTEM EXPDTA X-RAY DIFFRACTION AUTHOR S.W.SCALLY,J.ROSSJOHN REVDAT 4 27-DEC-23 4MDJ 1 HETSYN LINK REVDAT 3 29-JUL-20 4MDJ 1 COMPND REMARK SEQADV HETNAM REVDAT 3 2 1 LINK SITE ATOM REVDAT 2 11-DEC-13 4MDJ 1 JRNL REVDAT 1 04-DEC-13 4MDJ 0 JRNL AUTH S.W.SCALLY,J.PETERSEN,S.C.LAW,N.L.DUDEK,H.J.NEL,K.L.LOH, JRNL AUTH 2 L.C.WIJEYEWICKREMA,S.B.ECKLE,J.VAN HEEMST,R.N.PIKE, JRNL AUTH 3 J.MCCLUSKEY,R.E.TOES,N.L.LA GRUTA,A.W.PURCELL,H.H.REID, JRNL AUTH 4 R.THOMAS,J.ROSSJOHN JRNL TITL A MOLECULAR BASIS FOR THE ASSOCIATION OF THE HLA-DRB1 LOCUS, JRNL TITL 2 CITRULLINATION, AND RHEUMATOID ARTHRITIS. JRNL REF J.EXP.MED. V. 210 2569 2013 JRNL REFN ISSN 0022-1007 JRNL PMID 24190431 JRNL DOI 10.1084/JEM.20131241 REMARK 2 REMARK 2 RESOLUTION. 1.70 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE: 1.8.1_1168) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.70 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 45.61 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 3 NUMBER OF REFLECTIONS : 52276 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.164 REMARK 3 R VALUE (WORKING SET) : 0.162 REMARK 3 FREE R VALUE : 0.188 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.050 REMARK 3 FREE R VALUE TEST SET COUNT : 2640 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 45.6277 - 4.5349 1.00 2787 152 0.1654 0.1730 REMARK 3 2 4.5349 - 3.5999 1.00 2665 146 0.1367 0.1421 REMARK 3 3 3.5999 - 3.1450 1.00 2642 138 0.1488 0.1849 REMARK 3 4 3.1450 - 2.8575 1.00 2624 157 0.1675 0.1797 REMARK 3 5 2.8575 - 2.6527 1.00 2616 143 0.1667 0.1962 REMARK 3 6 2.6527 - 2.4963 1.00 2613 139 0.1614 0.1778 REMARK 3 7 2.4963 - 2.3713 1.00 2604 129 0.1617 0.2154 REMARK 3 8 2.3713 - 2.2681 1.00 2620 135 0.1597 0.1845 REMARK 3 9 2.2681 - 2.1808 1.00 2595 133 0.1546 0.1839 REMARK 3 10 2.1808 - 2.1055 1.00 2613 128 0.1565 0.2143 REMARK 3 11 2.1055 - 2.0397 1.00 2583 140 0.1539 0.1820 REMARK 3 12 2.0397 - 1.9814 1.00 2588 152 0.1662 0.2025 REMARK 3 13 1.9814 - 1.9292 1.00 2601 122 0.1723 0.2017 REMARK 3 14 1.9292 - 1.8822 1.00 2604 127 0.1684 0.2269 REMARK 3 15 1.8822 - 1.8394 1.00 2581 136 0.1785 0.2153 REMARK 3 16 1.8394 - 1.8002 1.00 2549 138 0.1848 0.2250 REMARK 3 17 1.8002 - 1.7642 1.00 2606 136 0.1982 0.2298 REMARK 3 18 1.7642 - 1.7309 1.00 2548 153 0.2099 0.2531 REMARK 3 19 1.7309 - 1.7000 1.00 2597 136 0.2246 0.2736 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.150 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 18.250 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.005 3408 REMARK 3 ANGLE : 1.057 4659 REMARK 3 CHIRALITY : 0.076 505 REMARK 3 PLANARITY : 0.005 610 REMARK 3 DIHEDRAL : 16.481 1281 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 11 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 3 THROUGH 26 ) REMARK 3 ORIGIN FOR THE GROUP (A): -40.9813 -26.6376 -3.7663 REMARK 3 T TENSOR REMARK 3 T11: 0.0655 T22: 0.1053 REMARK 3 T33: 0.0638 T12: 0.0017 REMARK 3 T13: 0.0071 T23: -0.0149 REMARK 3 L TENSOR REMARK 3 L11: 2.6252 L22: 7.7800 REMARK 3 L33: 0.7105 L12: 0.2042 REMARK 3 L13: 0.9031 L23: 0.1157 REMARK 3 S TENSOR REMARK 3 S11: -0.0411 S12: -0.1977 S13: 0.1257 REMARK 3 S21: 0.2758 S22: -0.0028 S23: -0.1068 REMARK 3 S31: -0.0411 S32: -0.0038 S33: 0.0333 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 27 THROUGH 55 ) REMARK 3 ORIGIN FOR THE GROUP (A): -40.2287 -18.2978 5.9769 REMARK 3 T TENSOR REMARK 3 T11: 0.1391 T22: 0.1851 REMARK 3 T33: 0.1295 T12: 0.0080 REMARK 3 T13: -0.0019 T23: -0.0641 REMARK 3 L TENSOR REMARK 3 L11: 2.6021 L22: 4.2575 REMARK 3 L33: 4.0165 L12: -0.3402 REMARK 3 L13: -0.1699 L23: 0.3552 REMARK 3 S TENSOR REMARK 3 S11: 0.0852 S12: -0.5874 S13: 0.3434 REMARK 3 S21: 0.5043 S22: -0.0593 S23: 0.2187 REMARK 3 S31: -0.1725 S32: -0.0078 S33: 0.0041 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 56 THROUGH 76 ) REMARK 3 ORIGIN FOR THE GROUP (A): -50.7871 -35.8908 -3.9729 REMARK 3 T TENSOR REMARK 3 T11: 0.0865 T22: 0.1384 REMARK 3 T33: 0.1266 T12: -0.0222 REMARK 3 T13: 0.0213 T23: 0.0537 REMARK 3 L TENSOR REMARK 3 L11: 2.3576 L22: 6.2985 REMARK 3 L33: 3.9527 L12: -0.0368 REMARK 3 L13: -0.1630 L23: 3.2594 REMARK 3 S TENSOR REMARK 3 S11: 0.0031 S12: -0.1528 S13: -0.0867 REMARK 3 S21: 0.3096 S22: -0.0834 S23: 0.3799 REMARK 3 S31: 0.3174 S32: -0.3423 S33: 0.0974 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 77 THROUGH 112 ) REMARK 3 ORIGIN FOR THE GROUP (A): -23.0184 -29.7276 -0.9110 REMARK 3 T TENSOR REMARK 3 T11: 0.1227 T22: 0.1002 REMARK 3 T33: 0.0766 T12: 0.0116 REMARK 3 T13: -0.0238 T23: 0.0121 REMARK 3 L TENSOR REMARK 3 L11: 3.7810 L22: 2.5960 REMARK 3 L33: 1.7041 L12: 2.1769 REMARK 3 L13: 1.9022 L23: 1.1506 REMARK 3 S TENSOR REMARK 3 S11: -0.2134 S12: 0.0702 S13: 0.1396 REMARK 3 S21: 0.0338 S22: 0.1098 S23: -0.0871 REMARK 3 S31: -0.1253 S32: 0.2048 S33: 0.0611 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 113 THROUGH 144 ) REMARK 3 ORIGIN FOR THE GROUP (A): -26.7890 -31.8799 3.7293 REMARK 3 T TENSOR REMARK 3 T11: 0.1498 T22: 0.1196 REMARK 3 T33: 0.0722 T12: 0.0101 REMARK 3 T13: -0.0182 T23: 0.0094 REMARK 3 L TENSOR REMARK 3 L11: 2.9978 L22: 0.6222 REMARK 3 L33: 1.3349 L12: -0.3044 REMARK 3 L13: 1.6230 L23: 0.3442 REMARK 3 S TENSOR REMARK 3 S11: -0.0946 S12: -0.3483 S13: -0.0035 REMARK 3 S21: 0.2502 S22: 0.0588 S23: -0.0847 REMARK 3 S31: -0.0543 S32: -0.1789 S33: 0.0365 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 145 THROUGH 181 ) REMARK 3 ORIGIN FOR THE GROUP (A): -17.8655 -31.9378 4.6990 REMARK 3 T TENSOR REMARK 3 T11: 0.1384 T22: 0.1177 REMARK 3 T33: 0.1202 T12: 0.0020 REMARK 3 T13: -0.0299 T23: 0.0315 REMARK 3 L TENSOR REMARK 3 L11: 4.1396 L22: 2.7261 REMARK 3 L33: 3.2352 L12: 1.2542 REMARK 3 L13: 2.7834 L23: 1.3200 REMARK 3 S TENSOR REMARK 3 S11: 0.0562 S12: 0.0033 S13: -0.2336 REMARK 3 S21: 0.2447 S22: 0.0701 S23: -0.4905 REMARK 3 S31: 0.0610 S32: 0.1626 S33: -0.1259 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 2 THROUGH 51 ) REMARK 3 ORIGIN FOR THE GROUP (A): -44.6370 -27.3312 -14.2081 REMARK 3 T TENSOR REMARK 3 T11: 0.0773 T22: 0.0683 REMARK 3 T33: 0.0790 T12: -0.0014 REMARK 3 T13: 0.0059 T23: 0.0184 REMARK 3 L TENSOR REMARK 3 L11: 1.4707 L22: 2.0112 REMARK 3 L33: 1.2939 L12: -0.0081 REMARK 3 L13: 0.2959 L23: -0.1346 REMARK 3 S TENSOR REMARK 3 S11: -0.0257 S12: 0.0652 S13: 0.1672 REMARK 3 S21: -0.1346 S22: -0.0631 S23: -0.1254 REMARK 3 S31: -0.0267 S32: 0.0552 S33: 0.0785 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 52 THROUGH 89 ) REMARK 3 ORIGIN FOR THE GROUP (A): -53.0863 -21.4171 -12.7163 REMARK 3 T TENSOR REMARK 3 T11: 0.0946 T22: 0.0718 REMARK 3 T33: 0.0980 T12: 0.0044 REMARK 3 T13: 0.0068 T23: 0.0296 REMARK 3 L TENSOR REMARK 3 L11: 3.1352 L22: 2.7009 REMARK 3 L33: 2.3874 L12: 1.1102 REMARK 3 L13: 1.2008 L23: 1.5203 REMARK 3 S TENSOR REMARK 3 S11: -0.0850 S12: -0.0586 S13: 0.2444 REMARK 3 S21: -0.0620 S22: -0.0172 S23: 0.1205 REMARK 3 S31: 0.0208 S32: -0.1374 S33: 0.1002 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 90 THROUGH 133 ) REMARK 3 ORIGIN FOR THE GROUP (A): -12.4464 -11.5677 -5.7105 REMARK 3 T TENSOR REMARK 3 T11: 0.1332 T22: 0.1303 REMARK 3 T33: 0.1446 T12: 0.0162 REMARK 3 T13: -0.0489 T23: -0.0492 REMARK 3 L TENSOR REMARK 3 L11: 4.0116 L22: 1.1543 REMARK 3 L33: 1.0002 L12: 0.3401 REMARK 3 L13: -1.3117 L23: 0.3506 REMARK 3 S TENSOR REMARK 3 S11: -0.0467 S12: -0.2252 S13: 0.0810 REMARK 3 S21: -0.0254 S22: 0.1178 S23: -0.0195 REMARK 3 S31: 0.1150 S32: 0.1629 S33: -0.0785 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 134 THROUGH 192 ) REMARK 3 ORIGIN FOR THE GROUP (A): -9.9783 -9.3567 -8.6190 REMARK 3 T TENSOR REMARK 3 T11: 0.0942 T22: 0.1191 REMARK 3 T33: 0.1738 T12: -0.0061 REMARK 3 T13: -0.0171 T23: -0.0356 REMARK 3 L TENSOR REMARK 3 L11: 1.7444 L22: 0.6923 REMARK 3 L33: 1.1204 L12: -0.2318 REMARK 3 L13: -0.7918 L23: 0.0436 REMARK 3 S TENSOR REMARK 3 S11: 0.0361 S12: -0.0911 S13: 0.3127 REMARK 3 S21: -0.0485 S22: 0.0524 S23: -0.1470 REMARK 3 S31: -0.0522 S32: 0.1747 S33: -0.0731 REMARK 3 TLS GROUP : 11 REMARK 3 SELECTION: CHAIN 'C' AND (RESID 1 THROUGH 13 ) REMARK 3 ORIGIN FOR THE GROUP (A): -53.4080 -25.0001 -5.4303 REMARK 3 T TENSOR REMARK 3 T11: 0.0822 T22: 0.1467 REMARK 3 T33: 0.1294 T12: -0.0079 REMARK 3 T13: 0.0159 T23: 0.0067 REMARK 3 L TENSOR REMARK 3 L11: 3.2521 L22: 2.0486 REMARK 3 L33: 3.9931 L12: 0.2415 REMARK 3 L13: 0.6691 L23: 1.6042 REMARK 3 S TENSOR REMARK 3 S11: 0.0773 S12: -0.2296 S13: 0.1805 REMARK 3 S21: 0.1419 S22: -0.1535 S23: 0.2456 REMARK 3 S31: 0.1219 S32: -0.3064 S33: 0.1295 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4MDJ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 09-SEP-13. REMARK 100 THE DEPOSITION ID IS D_1000081774. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 26-SEP-12 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.3 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : AUSTRALIAN SYNCHROTRON REMARK 200 BEAMLINE : MX2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : .95370 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 52300 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.700 REMARK 200 RESOLUTION RANGE LOW (A) : 62.430 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : NULL REMARK 200 DATA REDUNDANCY : 6.400 REMARK 200 R MERGE (I) : 0.10500 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.70 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.79 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.8 REMARK 200 DATA REDUNDANCY IN SHELL : 6.50 REMARK 200 R MERGE FOR SHELL (I) : 0.58800 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.900 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 53.43 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.64 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 25% PEG 3350, 0.2M POTASSIUM NITRATE, REMARK 280 0.1M BIS-TRIS-PROPANE PH 7.3, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 294K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 2 2 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -X,Y,-Z+1/2 REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 38.90400 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 38.90400 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 33.22100 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 91.22250 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 33.22100 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 91.22250 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 38.90400 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 33.22100 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 91.22250 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 38.90400 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 33.22100 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 91.22250 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 6950 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 18310 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -32.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH B 807 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ILE A 1 REMARK 465 LYS A 2 REMARK 465 THR A 182 REMARK 465 SER A 183 REMARK 465 GLY A 184 REMARK 465 ASP A 185 REMARK 465 ASP A 186 REMARK 465 ASP A 187 REMARK 465 ASP A 188 REMARK 465 LYS A 189 REMARK 465 GLY B -1 REMARK 465 SER B 0 REMARK 465 GLY B 1 REMARK 465 GLY B 193 REMARK 465 ASP B 194 REMARK 465 ASP B 195 REMARK 465 ASP B 196 REMARK 465 ASP B 197 REMARK 465 LYS B 198 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 HIS B 33 -114.34 57.64 REMARK 500 THR B 90 -73.90 -122.63 REMARK 500 PRO B 124 -168.76 -77.94 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4MCY RELATED DB: PDB REMARK 900 RELATED ID: 4MCZ RELATED DB: PDB REMARK 900 RELATED ID: 4MD0 RELATED DB: PDB REMARK 900 RELATED ID: 4MD4 RELATED DB: PDB REMARK 900 RELATED ID: 4MD5 RELATED DB: PDB REMARK 900 RELATED ID: 4MDI RELATED DB: PDB DBREF 4MDJ A 1 181 UNP P01903 DRA_HUMAN 26 206 DBREF 4MDJ B 1 190 UNP P13760 2B14_HUMAN 30 219 DBREF 4MDJ C 1 13 UNP P08670 VIME_HUMAN 66 78 SEQADV 4MDJ THR A 182 UNP P01903 EXPRESSION TAG SEQADV 4MDJ SER A 183 UNP P01903 EXPRESSION TAG SEQADV 4MDJ GLY A 184 UNP P01903 EXPRESSION TAG SEQADV 4MDJ ASP A 185 UNP P01903 EXPRESSION TAG SEQADV 4MDJ ASP A 186 UNP P01903 EXPRESSION TAG SEQADV 4MDJ ASP A 187 UNP P01903 EXPRESSION TAG SEQADV 4MDJ ASP A 188 UNP P01903 EXPRESSION TAG SEQADV 4MDJ LYS A 189 UNP P01903 EXPRESSION TAG SEQADV 4MDJ GLY B -1 UNP P13760 EXPRESSION TAG SEQADV 4MDJ SER B 0 UNP P13760 EXPRESSION TAG SEQADV 4MDJ ILE B 67 UNP P13760 LEU 96 VARIANT SEQADV 4MDJ ASP B 70 UNP P13760 GLN 99 VARIANT SEQADV 4MDJ GLU B 71 UNP P13760 LYS 100 VARIANT SEQADV 4MDJ VAL B 86 UNP P13760 GLY 115 VARIANT SEQADV 4MDJ THR B 191 UNP P13760 EXPRESSION TAG SEQADV 4MDJ GLY B 192 UNP P13760 EXPRESSION TAG SEQADV 4MDJ GLY B 193 UNP P13760 EXPRESSION TAG SEQADV 4MDJ ASP B 194 UNP P13760 EXPRESSION TAG SEQADV 4MDJ ASP B 195 UNP P13760 EXPRESSION TAG SEQADV 4MDJ ASP B 196 UNP P13760 EXPRESSION TAG SEQADV 4MDJ ASP B 197 UNP P13760 EXPRESSION TAG SEQADV 4MDJ LYS B 198 UNP P13760 EXPRESSION TAG SEQRES 1 A 189 ILE LYS GLU GLU HIS VAL ILE ILE GLN ALA GLU PHE TYR SEQRES 2 A 189 LEU ASN PRO ASP GLN SER GLY GLU PHE MET PHE ASP PHE SEQRES 3 A 189 ASP GLY ASP GLU ILE PHE HIS VAL ASP MET ALA LYS LYS SEQRES 4 A 189 GLU THR VAL TRP ARG LEU GLU GLU PHE GLY ARG PHE ALA SEQRES 5 A 189 SER PHE GLU ALA GLN GLY ALA LEU ALA ASN ILE ALA VAL SEQRES 6 A 189 ASP LYS ALA ASN LEU GLU ILE MET THR LYS ARG SER ASN SEQRES 7 A 189 TYR THR PRO ILE THR ASN VAL PRO PRO GLU VAL THR VAL SEQRES 8 A 189 LEU THR ASN SER PRO VAL GLU LEU ARG GLU PRO ASN VAL SEQRES 9 A 189 LEU ILE CYS PHE ILE ASP LYS PHE THR PRO PRO VAL VAL SEQRES 10 A 189 ASN VAL THR TRP LEU ARG ASN GLY LYS PRO VAL THR THR SEQRES 11 A 189 GLY VAL SER GLU THR VAL PHE LEU PRO ARG GLU ASP HIS SEQRES 12 A 189 LEU PHE ARG LYS PHE HIS TYR LEU PRO PHE LEU PRO SER SEQRES 13 A 189 THR GLU ASP VAL TYR ASP CYS ARG VAL GLU HIS TRP GLY SEQRES 14 A 189 LEU ASP GLU PRO LEU LEU LYS HIS TRP GLU PHE ASP THR SEQRES 15 A 189 SER GLY ASP ASP ASP ASP LYS SEQRES 1 B 200 GLY SER GLY ASP THR ARG PRO ARG PHE LEU GLU GLN VAL SEQRES 2 B 200 LYS HIS GLU CYS HIS PHE PHE ASN GLY THR GLU ARG VAL SEQRES 3 B 200 ARG PHE LEU ASP ARG TYR PHE TYR HIS GLN GLU GLU TYR SEQRES 4 B 200 VAL ARG PHE ASP SER ASP VAL GLY GLU TYR ARG ALA VAL SEQRES 5 B 200 THR GLU LEU GLY ARG PRO ASP ALA GLU TYR TRP ASN SER SEQRES 6 B 200 GLN LYS ASP ILE LEU GLU ASP GLU ARG ALA ALA VAL ASP SEQRES 7 B 200 THR TYR CYS ARG HIS ASN TYR GLY VAL VAL GLU SER PHE SEQRES 8 B 200 THR VAL GLN ARG ARG VAL TYR PRO GLU VAL THR VAL TYR SEQRES 9 B 200 PRO ALA LYS THR GLN PRO LEU GLN HIS HIS ASN LEU LEU SEQRES 10 B 200 VAL CYS SER VAL ASN GLY PHE TYR PRO GLY SER ILE GLU SEQRES 11 B 200 VAL ARG TRP PHE ARG ASN GLY GLN GLU GLU LYS THR GLY SEQRES 12 B 200 VAL VAL SER THR GLY LEU ILE GLN ASN GLY ASP TRP THR SEQRES 13 B 200 PHE GLN THR LEU VAL MET LEU GLU THR VAL PRO ARG SER SEQRES 14 B 200 GLY GLU VAL TYR THR CYS GLN VAL GLU HIS PRO SER LEU SEQRES 15 B 200 THR SER PRO LEU THR VAL GLU TRP ARG ALA THR GLY GLY SEQRES 16 B 200 ASP ASP ASP ASP LYS SEQRES 1 C 13 SER ALA VAL ARG LEU ARG SER SER VAL PRO GLY VAL ARG MODRES 4MDJ ASN A 78 ASN GLYCOSYLATION SITE MODRES 4MDJ ASN B 19 ASN GLYCOSYLATION SITE MODRES 4MDJ ASN A 118 ASN GLYCOSYLATION SITE HET NAG D 1 14 HET NAG D 2 14 HET NAG A 500 14 HET NAG B 500 14 HET EDO C 101 4 HETNAM NAG 2-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE HETNAM EDO 1,2-ETHANEDIOL HETSYN NAG N-ACETYL-BETA-D-GLUCOSAMINE; 2-ACETAMIDO-2-DEOXY-BETA- HETSYN 2 NAG D-GLUCOSE; 2-ACETAMIDO-2-DEOXY-D-GLUCOSE; 2-ACETAMIDO- HETSYN 3 NAG 2-DEOXY-GLUCOSE; N-ACETYL-D-GLUCOSAMINE HETSYN EDO ETHYLENE GLYCOL FORMUL 4 NAG 4(C8 H15 N O6) FORMUL 7 EDO C2 H6 O2 FORMUL 8 HOH *535(H2 O) HELIX 1 1 LEU A 45 PHE A 51 5 7 HELIX 2 2 ALA A 56 SER A 77 1 22 HELIX 3 3 THR B 51 LEU B 53 5 3 HELIX 4 4 GLY B 54 SER B 63 1 10 HELIX 5 5 GLN B 64 ALA B 73 1 10 HELIX 6 6 ALA B 73 TYR B 78 1 6 HELIX 7 7 TYR B 78 GLU B 87 1 10 HELIX 8 8 SER B 88 THR B 90 5 3 SHEET 1 A 8 GLU A 40 TRP A 43 0 SHEET 2 A 8 ASP A 29 ASP A 35 -1 N HIS A 33 O VAL A 42 SHEET 3 A 8 SER A 19 PHE A 26 -1 N PHE A 26 O ASP A 29 SHEET 4 A 8 HIS A 5 ASN A 15 -1 N ILE A 8 O ASP A 25 SHEET 5 A 8 PHE B 7 PHE B 18 -1 O PHE B 17 N HIS A 5 SHEET 6 A 8 ARG B 23 TYR B 32 -1 O ARG B 25 N HIS B 16 SHEET 7 A 8 GLU B 35 ASP B 41 -1 O TYR B 37 N TYR B 30 SHEET 8 A 8 TYR B 47 ALA B 49 -1 O ARG B 48 N ARG B 39 SHEET 1 B 4 GLU A 88 THR A 93 0 SHEET 2 B 4 ASN A 103 PHE A 112 -1 O ILE A 106 N LEU A 92 SHEET 3 B 4 PHE A 145 PHE A 153 -1 O LEU A 151 N LEU A 105 SHEET 4 B 4 SER A 133 GLU A 134 -1 N SER A 133 O TYR A 150 SHEET 1 C 4 GLU A 88 THR A 93 0 SHEET 2 C 4 ASN A 103 PHE A 112 -1 O ILE A 106 N LEU A 92 SHEET 3 C 4 PHE A 145 PHE A 153 -1 O LEU A 151 N LEU A 105 SHEET 4 C 4 LEU A 138 PRO A 139 -1 N LEU A 138 O ARG A 146 SHEET 1 D 4 LYS A 126 VAL A 128 0 SHEET 2 D 4 ASN A 118 ARG A 123 -1 N ARG A 123 O LYS A 126 SHEET 3 D 4 VAL A 160 GLU A 166 -1 O ARG A 164 N THR A 120 SHEET 4 D 4 LEU A 174 GLU A 179 -1 O TRP A 178 N TYR A 161 SHEET 1 E 4 GLU B 98 ALA B 104 0 SHEET 2 E 4 LEU B 114 PHE B 122 -1 O SER B 118 N THR B 100 SHEET 3 E 4 PHE B 155 LEU B 161 -1 O THR B 157 N VAL B 119 SHEET 4 E 4 VAL B 142 SER B 144 -1 N VAL B 143 O MET B 160 SHEET 1 F 4 GLU B 98 ALA B 104 0 SHEET 2 F 4 LEU B 114 PHE B 122 -1 O SER B 118 N THR B 100 SHEET 3 F 4 PHE B 155 LEU B 161 -1 O THR B 157 N VAL B 119 SHEET 4 F 4 ILE B 148 GLN B 149 -1 N ILE B 148 O GLN B 156 SHEET 1 G 4 GLN B 136 GLU B 138 0 SHEET 2 G 4 GLU B 128 ARG B 133 -1 N ARG B 133 O GLN B 136 SHEET 3 G 4 VAL B 170 GLU B 176 -1 O GLN B 174 N ARG B 130 SHEET 4 G 4 LEU B 184 ARG B 189 -1 O LEU B 184 N VAL B 175 SSBOND 1 CYS A 107 CYS A 163 1555 1555 2.03 SSBOND 2 CYS B 15 CYS B 79 1555 1555 2.06 SSBOND 3 CYS B 117 CYS B 173 1555 1555 2.02 LINK ND2 ASN A 78 C1 NAG A 500 1555 1555 1.44 LINK ND2 ASN A 118 C1 NAG D 1 1555 1555 1.45 LINK ND2 ASN B 19 C1 NAG B 500 1555 1555 1.44 LINK O4 NAG D 1 C1 NAG D 2 1555 1555 1.45 CISPEP 1 ASN A 15 PRO A 16 0 3.11 CISPEP 2 THR A 113 PRO A 114 0 -1.26 CISPEP 3 TYR B 123 PRO B 124 0 2.07 CRYST1 66.442 182.445 77.808 90.00 90.00 90.00 C 2 2 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.015051 0.000000 0.000000 0.00000 SCALE2 0.000000 0.005481 0.000000 0.00000 SCALE3 0.000000 0.000000 0.012852 0.00000