HEADER REPLICATION 30-AUG-13 4MHQ TITLE CRYSTAL STRUCTURE OF HUMAN PRIMASE CATALYTIC SUBUNIT COMPND MOL_ID: 1; COMPND 2 MOLECULE: DNA PRIMASE SMALL SUBUNIT; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: FULL LENGTH; COMPND 5 SYNONYM: DNA PRIMASE 49 KDA SUBUNIT, P49; COMPND 6 EC: 2.7.7.-; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: PRIM1; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: MODIFIED PET28B KEYWDS ZINC FINGER, PRIMASE, NTP BINDING, NUCLEUS, REPLICATION EXPDTA X-RAY DIFFRACTION AUTHOR K.R.PARK,J.Y.AN,Y.LEE,H.S.YOUN,J.G.LEE,J.Y.KANG,T.G.KIM,J.J.LIM, AUTHOR 2 S.H.EOM,J.WANG REVDAT 2 20-MAR-24 4MHQ 1 REMARK SEQADV LINK REVDAT 1 03-SEP-14 4MHQ 0 JRNL AUTH K.R.PARK,J.Y.AN,Y.LEE,H.S.YOUN,J.G.LEE,J.Y.KANG,T.G.KIM, JRNL AUTH 2 J.J.LIM,S.H.EOM,J.WANG JRNL TITL CRYSTAL STRUCTURE OF HUMAN PRIMASE CATALYTIC SUBUNIT JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.20 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.7.0029 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.20 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 38.06 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 79.9 REMARK 3 NUMBER OF REFLECTIONS : 21310 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.179 REMARK 3 R VALUE (WORKING SET) : 0.176 REMARK 3 FREE R VALUE : 0.233 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1135 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.20 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.26 REMARK 3 REFLECTION IN BIN (WORKING SET) : 336 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 17.45 REMARK 3 BIN R VALUE (WORKING SET) : 0.2600 REMARK 3 BIN FREE R VALUE SET COUNT : 17 REMARK 3 BIN FREE R VALUE : 0.4130 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3353 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 14 REMARK 3 SOLVENT ATOMS : 221 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 38.96 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.92000 REMARK 3 B22 (A**2) : -0.92000 REMARK 3 B33 (A**2) : 1.84000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.307 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.231 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.165 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 13.342 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.955 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.922 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3473 ; 0.007 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4693 ; 1.182 ; 1.957 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 402 ; 6.096 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 175 ;36.757 ;23.771 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 646 ;16.846 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 23 ;15.557 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 492 ; 0.088 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2619 ; 0.004 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 1 A 419 REMARK 3 ORIGIN FOR THE GROUP (A): 18.7984 26.7721 53.0541 REMARK 3 T TENSOR REMARK 3 T11: 0.0571 T22: 0.0059 REMARK 3 T33: 0.0506 T12: 0.0146 REMARK 3 T13: -0.0190 T23: 0.0042 REMARK 3 L TENSOR REMARK 3 L11: 0.1683 L22: 0.4887 REMARK 3 L33: 0.0824 L12: 0.2329 REMARK 3 L13: -0.0468 L23: -0.0743 REMARK 3 S TENSOR REMARK 3 S11: 0.0203 S12: 0.0150 S13: 0.0273 REMARK 3 S21: 0.0129 S22: 0.0056 S23: 0.0036 REMARK 3 S31: -0.0111 S32: -0.0055 S33: -0.0259 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4MHQ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 03-SEP-13. REMARK 100 THE DEPOSITION ID IS D_1000081925. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 19-JAN-13 REMARK 200 TEMPERATURE (KELVIN) : 90 REMARK 200 PH : 4.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SPRING-8 REMARK 200 BEAMLINE : BL26B1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.28262 REMARK 200 MONOCHROMATOR : FIXED EXIT SI DOUBLE CRYSTAL REMARK 200 MONOCHROMATOR REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : RIGAKU SATURN A200 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 25240 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.200 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 89.6 REMARK 200 DATA REDUNDANCY : 8.900 REMARK 200 R MERGE (I) : 0.07600 REMARK 200 R SYM (I) : 0.07600 REMARK 200 FOR THE DATA SET : 9.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.20 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.24 REMARK 200 COMPLETENESS FOR SHELL (%) : 91.5 REMARK 200 DATA REDUNDANCY IN SHELL : 4.70 REMARK 200 R MERGE FOR SHELL (I) : 0.97600 REMARK 200 R SYM FOR SHELL (I) : 0.97600 REMARK 200 FOR SHELL : 1.506 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: SOLVE REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 53.25 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.63 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1M NA-ACETATE, 0.2M TRI-NA-CITRATE, REMARK 280 20% PEG3350, 0.1M NA-ACETATE , PH 4.5, VAPOR DIFFUSION, HANGING REMARK 280 DROP, TEMPERATURE 294K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 43 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+3/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+1/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+3/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+1/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 73.81100 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 42.38100 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 42.38100 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 110.71650 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 42.38100 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 42.38100 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 36.90550 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 42.38100 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 42.38100 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 110.71650 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 42.38100 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 42.38100 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 36.90550 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 73.81100 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A -4 REMARK 465 ALA A -3 REMARK 465 MET A -2 REMARK 465 GLY A -1 REMARK 465 SER A 0 REMARK 465 SER A 361 REMARK 465 THR A 362 REMARK 465 ASN A 363 REMARK 465 GLU A 364 REMARK 465 GLU A 365 REMARK 465 GLU A 366 REMARK 465 LYS A 367 REMARK 465 GLU A 368 REMARK 465 GLU A 369 REMARK 465 ASN A 370 REMARK 465 GLU A 371 REMARK 465 ALA A 372 REMARK 465 GLU A 373 REMARK 465 SER A 374 REMARK 465 ASP A 375 REMARK 465 VAL A 376 REMARK 465 LYS A 377 REMARK 465 HIS A 378 REMARK 465 ARG A 379 REMARK 465 PHE A 420 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LEU A 49 -155.74 -101.50 REMARK 500 ASN A 74 62.88 33.27 REMARK 500 LEU A 96 -85.67 19.80 REMARK 500 CYS A 121 -70.00 -80.07 REMARK 500 CYS A 122 -78.62 -105.05 REMARK 500 ARG A 162 -95.95 -140.13 REMARK 500 THR A 250 -38.10 -35.13 REMARK 500 ASN A 281 91.69 -62.23 REMARK 500 ILE A 283 -140.24 -129.12 REMARK 500 ASN A 285 -73.19 -75.77 REMARK 500 ASP A 286 -4.83 77.39 REMARK 500 ARG A 381 -91.75 -125.65 REMARK 500 GLN A 417 43.42 -89.92 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 501 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 121 SG REMARK 620 2 CYS A 122 SG 119.3 REMARK 620 3 CYS A 128 SG 103.8 110.6 REMARK 620 4 CYS A 131 SG 101.3 109.4 112.3 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CIT A 502 DBREF 4MHQ A 1 420 UNP P49642 PRI1_HUMAN 1 420 SEQADV 4MHQ GLY A -4 UNP P49642 EXPRESSION TAG SEQADV 4MHQ ALA A -3 UNP P49642 EXPRESSION TAG SEQADV 4MHQ MET A -2 UNP P49642 EXPRESSION TAG SEQADV 4MHQ GLY A -1 UNP P49642 EXPRESSION TAG SEQADV 4MHQ SER A 0 UNP P49642 EXPRESSION TAG SEQRES 1 A 425 GLY ALA MET GLY SER MET GLU THR PHE ASP PRO THR GLU SEQRES 2 A 425 LEU PRO GLU LEU LEU LYS LEU TYR TYR ARG ARG LEU PHE SEQRES 3 A 425 PRO TYR SER GLN TYR TYR ARG TRP LEU ASN TYR GLY GLY SEQRES 4 A 425 VAL ILE LYS ASN TYR PHE GLN HIS ARG GLU PHE SER PHE SEQRES 5 A 425 THR LEU LYS ASP ASP ILE TYR ILE ARG TYR GLN SER PHE SEQRES 6 A 425 ASN ASN GLN SER ASP LEU GLU LYS GLU MET GLN LYS MET SEQRES 7 A 425 ASN PRO TYR LYS ILE ASP ILE GLY ALA VAL TYR SER HIS SEQRES 8 A 425 ARG PRO ASN GLN HIS ASN THR VAL LYS LEU GLY ALA PHE SEQRES 9 A 425 GLN ALA GLN GLU LYS GLU LEU VAL PHE ASP ILE ASP MET SEQRES 10 A 425 THR ASP TYR ASP ASP VAL ARG ARG CYS CYS SER SER ALA SEQRES 11 A 425 ASP ILE CYS PRO LYS CYS TRP THR LEU MET THR MET ALA SEQRES 12 A 425 ILE ARG ILE ILE ASP ARG ALA LEU LYS GLU ASP PHE GLY SEQRES 13 A 425 PHE LYS HIS ARG LEU TRP VAL TYR SER GLY ARG ARG GLY SEQRES 14 A 425 VAL HIS CYS TRP VAL CYS ASP GLU SER VAL ARG LYS LEU SEQRES 15 A 425 SER SER ALA VAL ARG SER GLY ILE VAL GLU TYR LEU SER SEQRES 16 A 425 LEU VAL LYS GLY GLY GLN ASP VAL LYS LYS LYS VAL HIS SEQRES 17 A 425 LEU SER GLU LYS ILE HIS PRO PHE ILE ARG LYS SER ILE SEQRES 18 A 425 ASN ILE ILE LYS LYS TYR PHE GLU GLU TYR ALA LEU VAL SEQRES 19 A 425 ASN GLN ASP ILE LEU GLU ASN LYS GLU SER TRP ASP LYS SEQRES 20 A 425 ILE LEU ALA LEU VAL PRO GLU THR ILE HIS ASP GLU LEU SEQRES 21 A 425 GLN GLN SER PHE GLN LYS SER HIS ASN SER LEU GLN ARG SEQRES 22 A 425 TRP GLU HIS LEU LYS LYS VAL ALA SER ARG TYR GLN ASN SEQRES 23 A 425 ASN ILE LYS ASN ASP LYS TYR GLY PRO TRP LEU GLU TRP SEQRES 24 A 425 GLU ILE MET LEU GLN TYR CYS PHE PRO ARG LEU ASP ILE SEQRES 25 A 425 ASN VAL SER LYS GLY ILE ASN HIS LEU LEU LYS SER PRO SEQRES 26 A 425 PHE SER VAL HIS PRO LYS THR GLY ARG ILE SER VAL PRO SEQRES 27 A 425 ILE ASP LEU GLN LYS VAL ASP GLN PHE ASP PRO PHE THR SEQRES 28 A 425 VAL PRO THR ILE SER PHE ILE CYS ARG GLU LEU ASP ALA SEQRES 29 A 425 ILE SER THR ASN GLU GLU GLU LYS GLU GLU ASN GLU ALA SEQRES 30 A 425 GLU SER ASP VAL LYS HIS ARG THR ARG ASP TYR LYS LYS SEQRES 31 A 425 THR SER LEU ALA PRO TYR VAL LYS VAL PHE GLU HIS PHE SEQRES 32 A 425 LEU GLU ASN LEU ASP LYS SER ARG LYS GLY GLU LEU LEU SEQRES 33 A 425 LYS LYS SER ASP LEU GLN LYS ASP PHE HET ZN A 501 1 HET CIT A 502 13 HETNAM ZN ZINC ION HETNAM CIT CITRIC ACID FORMUL 2 ZN ZN 2+ FORMUL 3 CIT C6 H8 O7 FORMUL 4 HOH *221(H2 O) HELIX 1 1 ASP A 5 THR A 7 5 3 HELIX 2 2 GLU A 8 LEU A 20 1 13 HELIX 3 3 PRO A 22 TYR A 32 1 11 HELIX 4 4 GLY A 33 VAL A 35 5 3 HELIX 5 5 LYS A 50 ASP A 52 5 3 HELIX 6 6 ASN A 62 ASN A 74 1 13 HELIX 7 7 ARG A 87 VAL A 94 5 8 HELIX 8 8 THR A 113 ARG A 119 5 7 HELIX 9 9 TRP A 132 ASP A 149 1 18 HELIX 10 10 ASP A 171 LEU A 177 1 7 HELIX 11 11 SER A 178 SER A 190 1 13 HELIX 12 12 HIS A 209 LEU A 228 1 20 HELIX 13 13 ASN A 236 ALA A 245 1 10 HELIX 14 14 PRO A 248 SER A 262 1 15 HELIX 15 15 ASN A 264 ARG A 278 1 15 HELIX 16 16 PRO A 290 PHE A 302 1 13 HELIX 17 17 ASP A 306 GLY A 312 1 7 HELIX 18 18 ASP A 335 PHE A 342 5 8 HELIX 19 19 ASP A 343 VAL A 347 5 5 HELIX 20 20 THR A 349 ALA A 359 1 11 HELIX 21 21 ASP A 382 THR A 386 5 5 HELIX 22 22 LEU A 388 GLN A 417 1 30 SHEET 1 A 4 TYR A 54 GLN A 58 0 SHEET 2 A 4 ARG A 43 THR A 48 -1 N PHE A 45 O GLN A 58 SHEET 3 A 4 LYS A 77 TYR A 84 -1 O ALA A 82 N GLU A 44 SHEET 4 A 4 ALA A 101 GLU A 103 -1 O GLU A 103 N VAL A 83 SHEET 1 B 4 TYR A 54 GLN A 58 0 SHEET 2 B 4 ARG A 43 THR A 48 -1 N PHE A 45 O GLN A 58 SHEET 3 B 4 LYS A 77 TYR A 84 -1 O ALA A 82 N GLU A 44 SHEET 4 B 4 LEU A 317 LYS A 318 -1 O LEU A 317 N ILE A 80 SHEET 1 C 3 LEU A 106 ASP A 111 0 SHEET 2 C 3 GLY A 164 VAL A 169 -1 O VAL A 165 N ILE A 110 SHEET 3 C 3 ARG A 155 TYR A 159 -1 N VAL A 158 O HIS A 166 LINK SG CYS A 121 ZN ZN A 501 1555 1555 2.33 LINK SG CYS A 122 ZN ZN A 501 1555 1555 2.34 LINK SG CYS A 128 ZN ZN A 501 1555 1555 2.34 LINK SG CYS A 131 ZN ZN A 501 1555 1555 2.36 CISPEP 1 MET A 1 GLU A 2 0 4.33 CISPEP 2 LYS A 193 GLY A 194 0 -0.04 CISPEP 3 ASN A 282 ILE A 283 0 -7.59 SITE 1 AC1 4 CYS A 121 CYS A 122 CYS A 128 CYS A 131 SITE 1 AC2 12 ASP A 109 ASP A 111 SER A 160 ARG A 162 SITE 2 AC2 12 ARG A 163 GLY A 164 HIS A 166 HIS A 324 SITE 3 AC2 12 LYS A 326 HOH A 736 HOH A 752 HOH A 821 CRYST1 84.762 84.762 147.622 90.00 90.00 90.00 P 43 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011798 0.000000 0.000000 0.00000 SCALE2 0.000000 0.011798 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006774 0.00000