HEADER ISOMERASE 06-SEP-13 4ML1 TITLE DISULFIDE ISOMERASE (DSBP) FROM MULTIDRUG RESISTANCE INCA/C TITLE 2 TRANSFERABLE PLASMID IN OXIDIZED STATE (P212121 SPACE GROUP) COMPND MOL_ID: 1; COMPND 2 MOLECULE: DSBP; COMPND 3 CHAIN: A, B, C, D; COMPND 4 FRAGMENT: UNP RESIDUES 22-235; COMPND 5 SYNONYM: DSBP THIOL:DISULFIDE INTERCHANGE PROTEIN, PLASMID OR COMPND 6 INTEGRATIVE AND CONJUGATIVE ELEMENTS ENCODED DISULFIDE ISOMERASE; COMPND 7 EC: 5.3.4.1; COMPND 8 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: KLEBSIELLA PNEUMONIAE; SOURCE 3 ORGANISM_TAXID: 573; SOURCE 4 GENE: DSBC, DSBP, PNDM10469_89; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3)PLYS KEYWDS DSBC, DSBG, FOLDING AND ASSEMBLY, BACTERIAL CONJUGATION, HORIZONTAL KEYWDS 2 GENE TRANSFER, DOMAIN SWAPPING, THIOREDOXIN FOLD, BACTERIAL KEYWDS 3 PERIPLASMIC SPACE, ISOMERASE EXPDTA X-RAY DIFFRACTION AUTHOR L.PREMKUMAR,F.KURTH,S.NEYER,J.L.MARTIN REVDAT 5 16-OCT-24 4ML1 1 SEQADV REVDAT 4 15-NOV-17 4ML1 1 REMARK REVDAT 3 19-FEB-14 4ML1 1 JRNL REVDAT 2 15-JAN-14 4ML1 1 JRNL REVDAT 1 11-DEC-13 4ML1 0 JRNL AUTH L.PREMKUMAR,F.KURTH,S.NEYER,M.A.SCHEMBRI,J.L.MARTIN JRNL TITL THE MULTIDRUG RESISTANCE INCA/C TRANSFERABLE PLASMID ENCODES JRNL TITL 2 A NOVEL DOMAIN-SWAPPED DIMERIC PROTEIN-DISULFIDE ISOMERASE. JRNL REF J.BIOL.CHEM. V. 289 2563 2014 JRNL REFN ISSN 0021-9258 JRNL PMID 24311786 JRNL DOI 10.1074/JBC.M113.516898 REMARK 2 REMARK 2 RESOLUTION. 1.98 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE: 1.8.2_1309) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.98 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 50.60 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.3 REMARK 3 NUMBER OF REFLECTIONS : 57720 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.194 REMARK 3 R VALUE (WORKING SET) : 0.192 REMARK 3 FREE R VALUE : 0.243 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.070 REMARK 3 FREE R VALUE TEST SET COUNT : 2926 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 50.6195 - 5.4550 1.00 2830 145 0.1783 0.1972 REMARK 3 2 5.4550 - 4.3306 0.99 2698 141 0.1429 0.1743 REMARK 3 3 4.3306 - 3.7834 0.99 2666 137 0.1536 0.1949 REMARK 3 4 3.7834 - 3.4375 1.00 2642 148 0.1743 0.2116 REMARK 3 5 3.4375 - 3.1912 1.00 2609 146 0.1869 0.2259 REMARK 3 6 3.1912 - 3.0031 1.00 2639 141 0.1919 0.2830 REMARK 3 7 3.0031 - 2.8527 1.00 2652 110 0.1948 0.2453 REMARK 3 8 2.8527 - 2.7285 1.00 2627 136 0.1880 0.2644 REMARK 3 9 2.7285 - 2.6235 1.00 2621 137 0.1961 0.2615 REMARK 3 10 2.6235 - 2.5330 1.00 2627 124 0.1926 0.2499 REMARK 3 11 2.5330 - 2.4538 1.00 2575 161 0.1871 0.2639 REMARK 3 12 2.4538 - 2.3836 1.00 2614 131 0.1885 0.2387 REMARK 3 13 2.3836 - 2.3209 1.00 2615 142 0.2037 0.2928 REMARK 3 14 2.3209 - 2.2642 0.99 2545 164 0.2324 0.2817 REMARK 3 15 2.2642 - 2.2128 0.92 2412 136 0.3939 0.4717 REMARK 3 16 2.2128 - 2.1657 1.00 2554 138 0.2133 0.2691 REMARK 3 17 2.1657 - 2.1224 1.00 2618 131 0.2137 0.2836 REMARK 3 18 2.1224 - 2.0823 0.99 2573 139 0.2267 0.3037 REMARK 3 19 2.0823 - 2.0451 0.99 2543 140 0.2327 0.2856 REMARK 3 20 2.0451 - 2.0104 0.99 2555 136 0.2314 0.3114 REMARK 3 21 2.0104 - 1.9780 0.99 2579 143 0.2356 0.2918 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.240 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 23.910 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 24.50 REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.014 6401 REMARK 3 ANGLE : 1.468 8635 REMARK 3 CHIRALITY : 0.063 978 REMARK 3 PLANARITY : 0.009 1117 REMARK 3 DIHEDRAL : 12.460 2407 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 11 THROUGH 212 ) REMARK 3 ORIGIN FOR THE GROUP (A): 13.2064 -8.7959 -29.1637 REMARK 3 T TENSOR REMARK 3 T11: 0.2079 T22: 0.2368 REMARK 3 T33: 0.1801 T12: 0.0013 REMARK 3 T13: -0.0390 T23: -0.0242 REMARK 3 L TENSOR REMARK 3 L11: 2.6206 L22: 1.1458 REMARK 3 L33: 1.7341 L12: 0.5108 REMARK 3 L13: -0.5142 L23: -0.6139 REMARK 3 S TENSOR REMARK 3 S11: 0.0895 S12: -0.5917 S13: -0.0419 REMARK 3 S21: 0.2037 S22: -0.0434 S23: 0.0806 REMARK 3 S31: 0.0250 S32: -0.0278 S33: -0.0313 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 10 THROUGH 213 ) REMARK 3 ORIGIN FOR THE GROUP (A): 12.7466 9.6742 -62.3632 REMARK 3 T TENSOR REMARK 3 T11: 0.2348 T22: 0.2406 REMARK 3 T33: 0.2040 T12: 0.0184 REMARK 3 T13: 0.0603 T23: 0.0259 REMARK 3 L TENSOR REMARK 3 L11: 1.9721 L22: 1.5164 REMARK 3 L33: 1.2409 L12: -0.5041 REMARK 3 L13: 0.6465 L23: -0.5494 REMARK 3 S TENSOR REMARK 3 S11: 0.0382 S12: 0.3421 S13: 0.2445 REMARK 3 S21: -0.2744 S22: 0.0042 S23: 0.0885 REMARK 3 S31: -0.0789 S32: -0.0208 S33: 0.1324 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'C' AND (RESID 12 THROUGH 213 ) REMARK 3 ORIGIN FOR THE GROUP (A): 11.8763 15.0036 -33.0131 REMARK 3 T TENSOR REMARK 3 T11: 0.1821 T22: 0.2474 REMARK 3 T33: 0.2780 T12: -0.0028 REMARK 3 T13: 0.0595 T23: -0.0983 REMARK 3 L TENSOR REMARK 3 L11: 0.3755 L22: 1.8159 REMARK 3 L33: 0.7729 L12: 1.4382 REMARK 3 L13: 0.8161 L23: 1.0837 REMARK 3 S TENSOR REMARK 3 S11: 0.0659 S12: -0.0092 S13: -0.1438 REMARK 3 S21: 0.0168 S22: 0.0384 S23: -0.2028 REMARK 3 S31: -0.0097 S32: 0.0746 S33: -0.0857 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'D' AND (RESID 11 THROUGH 213 ) REMARK 3 ORIGIN FOR THE GROUP (A): 8.6341 -13.7926 -57.9360 REMARK 3 T TENSOR REMARK 3 T11: 0.1800 T22: 0.1494 REMARK 3 T33: 0.1311 T12: 0.0030 REMARK 3 T13: -0.0573 T23: -0.0251 REMARK 3 L TENSOR REMARK 3 L11: 2.6646 L22: 1.7031 REMARK 3 L33: 1.1555 L12: -0.3238 REMARK 3 L13: -0.3696 L23: 0.7288 REMARK 3 S TENSOR REMARK 3 S11: 0.0516 S12: 0.2527 S13: -0.3473 REMARK 3 S21: -0.1318 S22: -0.0108 S23: -0.1022 REMARK 3 S31: 0.0972 S32: 0.0027 S33: 0.1286 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4ML1 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 10-SEP-13. REMARK 100 THE DEPOSITION ID IS D_1000082043. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 10-MAY-13 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.6 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : AUSTRALIAN SYNCHROTRON REMARK 200 BEAMLINE : MX2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9537 REMARK 200 MONOCHROMATOR : SI(111) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 58014 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.978 REMARK 200 RESOLUTION RANGE LOW (A) : 54.140 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 200 DATA REDUNDANCY : 3.500 REMARK 200 R MERGE (I) : 0.07900 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 8.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.98 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.09 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.2 REMARK 200 DATA REDUNDANCY IN SHELL : 3.40 REMARK 200 R MERGE FOR SHELL (I) : 0.46500 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.500 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 42.43 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.14 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 15% PEG3350, 0.1 M SODIUM MALONATE, PH REMARK 280 6.6, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 27.16500 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 69.51000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 54.13500 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 69.51000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 27.16500 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 54.13500 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4180 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 21240 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -21.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4140 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 21170 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -21.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 14970 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 35760 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -77.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A -2 REMARK 465 ASN A -1 REMARK 465 ALA A 0 REMARK 465 SER A 1 REMARK 465 SER A 2 REMARK 465 LYS A 3 REMARK 465 LEU A 4 REMARK 465 GLU A 5 REMARK 465 ILE A 6 REMARK 465 THR A 7 REMARK 465 ASP A 8 REMARK 465 PRO A 9 REMARK 465 ARG A 10 REMARK 465 ALA A 213 REMARK 465 GLU A 214 REMARK 465 SER B -2 REMARK 465 ASN B -1 REMARK 465 ALA B 0 REMARK 465 SER B 1 REMARK 465 SER B 2 REMARK 465 LYS B 3 REMARK 465 LEU B 4 REMARK 465 GLU B 5 REMARK 465 ILE B 6 REMARK 465 THR B 7 REMARK 465 ASP B 8 REMARK 465 PRO B 9 REMARK 465 GLU B 214 REMARK 465 SER C -2 REMARK 465 ASN C -1 REMARK 465 ALA C 0 REMARK 465 SER C 1 REMARK 465 SER C 2 REMARK 465 LYS C 3 REMARK 465 LEU C 4 REMARK 465 GLU C 5 REMARK 465 ILE C 6 REMARK 465 THR C 7 REMARK 465 ASP C 8 REMARK 465 PRO C 9 REMARK 465 ARG C 10 REMARK 465 ALA C 11 REMARK 465 GLU C 214 REMARK 465 SER D -2 REMARK 465 ASN D -1 REMARK 465 ALA D 0 REMARK 465 SER D 1 REMARK 465 SER D 2 REMARK 465 LYS D 3 REMARK 465 LEU D 4 REMARK 465 GLU D 5 REMARK 465 ILE D 6 REMARK 465 THR D 7 REMARK 465 ASP D 8 REMARK 465 PRO D 9 REMARK 465 ARG D 10 REMARK 465 GLU D 214 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OD2 ASP C 112 HH21 ARG C 202 1.60 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA A 132 -117.28 56.04 REMARK 500 ALA B 132 -118.59 54.40 REMARK 500 ASP B 169 87.15 -152.99 REMARK 500 ALA C 132 -121.61 56.74 REMARK 500 SER C 212 -157.75 -147.46 REMARK 500 ALA D 132 -120.96 55.61 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4ML6 RELATED DB: PDB REMARK 900 DISULFIDE ISOMERASE IN MONOCLINIC CRYSTAL FORM (REDUCED STATE) REMARK 900 RELATED ID: 4MLY RELATED DB: PDB REMARK 900 DISULFIDE ISOMERASE DBREF 4ML1 A 1 214 UNP A6GV51 A6GV51_KLEPN 22 235 DBREF 4ML1 B 1 214 UNP A6GV51 A6GV51_KLEPN 22 235 DBREF 4ML1 C 1 214 UNP A6GV51 A6GV51_KLEPN 22 235 DBREF 4ML1 D 1 214 UNP A6GV51 A6GV51_KLEPN 22 235 SEQADV 4ML1 SER A -2 UNP A6GV51 EXPRESSION TAG SEQADV 4ML1 ASN A -1 UNP A6GV51 EXPRESSION TAG SEQADV 4ML1 ALA A 0 UNP A6GV51 EXPRESSION TAG SEQADV 4ML1 SER B -2 UNP A6GV51 EXPRESSION TAG SEQADV 4ML1 ASN B -1 UNP A6GV51 EXPRESSION TAG SEQADV 4ML1 ALA B 0 UNP A6GV51 EXPRESSION TAG SEQADV 4ML1 SER C -2 UNP A6GV51 EXPRESSION TAG SEQADV 4ML1 ASN C -1 UNP A6GV51 EXPRESSION TAG SEQADV 4ML1 ALA C 0 UNP A6GV51 EXPRESSION TAG SEQADV 4ML1 SER D -2 UNP A6GV51 EXPRESSION TAG SEQADV 4ML1 ASN D -1 UNP A6GV51 EXPRESSION TAG SEQADV 4ML1 ALA D 0 UNP A6GV51 EXPRESSION TAG SEQRES 1 A 217 SER ASN ALA SER SER LYS LEU GLU ILE THR ASP PRO ARG SEQRES 2 A 217 ALA ALA LYS ILE GLU ASP ILE VAL GLU LEU PRO ILE LYS SEQRES 3 A 217 GLY VAL ARG ALA VAL GLN SER ASP GLY GLN ILE MET PHE SEQRES 4 A 217 LEU SER GLU ASN GLY ARG PHE VAL ILE SER GLY GLN ILE SEQRES 5 A 217 TYR ASP LEU TRP SER LYS LYS PRO LEU ASN THR MET SER SEQRES 6 A 217 GLN MET ARG ASP VAL ALA GLU ARG ILE HIS PHE LYS SER SEQRES 7 A 217 MET GLY MET ASP VAL ASP THR LEU ASN THR VAL SER MET SEQRES 8 A 217 GLY ARG GLY ASP LYS GLU VAL VAL VAL PHE VAL ASP PRO SEQRES 9 A 217 ARG CYS ALA VAL CYS HIS GLN LEU MET GLY ASP ALA LYS SEQRES 10 A 217 SER LEU VAL ASP ASP TYR THR PHE LYS PHE ILE VAL ILE SEQRES 11 A 217 PRO ALA LEU GLY ALA GLU SER ASN ARG LEU ALA LYS ASN SEQRES 12 A 217 LEU TYR CYS ALA LYS ASP LYS THR HIS ALA LEU ASP ALA SEQRES 13 A 217 LEU MET ASN ASN THR LEU GLY SER LEU PRO SER LYS GLU SEQRES 14 A 217 THR CYS ASP PRO GLY GLN TYR ASP GLN THR LEU LEU THR SEQRES 15 A 217 ALA HIS PHE ILE GLY ILE GLU GLY VAL PRO PHE VAL VAL SEQRES 16 A 217 ALA PRO ASP GLY ARG VAL SER LYS GLY ARG PRO LYS ASN SEQRES 17 A 217 LEU LYS SER TRP LEU GLU SER ALA GLU SEQRES 1 B 217 SER ASN ALA SER SER LYS LEU GLU ILE THR ASP PRO ARG SEQRES 2 B 217 ALA ALA LYS ILE GLU ASP ILE VAL GLU LEU PRO ILE LYS SEQRES 3 B 217 GLY VAL ARG ALA VAL GLN SER ASP GLY GLN ILE MET PHE SEQRES 4 B 217 LEU SER GLU ASN GLY ARG PHE VAL ILE SER GLY GLN ILE SEQRES 5 B 217 TYR ASP LEU TRP SER LYS LYS PRO LEU ASN THR MET SER SEQRES 6 B 217 GLN MET ARG ASP VAL ALA GLU ARG ILE HIS PHE LYS SER SEQRES 7 B 217 MET GLY MET ASP VAL ASP THR LEU ASN THR VAL SER MET SEQRES 8 B 217 GLY ARG GLY ASP LYS GLU VAL VAL VAL PHE VAL ASP PRO SEQRES 9 B 217 ARG CYS ALA VAL CYS HIS GLN LEU MET GLY ASP ALA LYS SEQRES 10 B 217 SER LEU VAL ASP ASP TYR THR PHE LYS PHE ILE VAL ILE SEQRES 11 B 217 PRO ALA LEU GLY ALA GLU SER ASN ARG LEU ALA LYS ASN SEQRES 12 B 217 LEU TYR CYS ALA LYS ASP LYS THR HIS ALA LEU ASP ALA SEQRES 13 B 217 LEU MET ASN ASN THR LEU GLY SER LEU PRO SER LYS GLU SEQRES 14 B 217 THR CYS ASP PRO GLY GLN TYR ASP GLN THR LEU LEU THR SEQRES 15 B 217 ALA HIS PHE ILE GLY ILE GLU GLY VAL PRO PHE VAL VAL SEQRES 16 B 217 ALA PRO ASP GLY ARG VAL SER LYS GLY ARG PRO LYS ASN SEQRES 17 B 217 LEU LYS SER TRP LEU GLU SER ALA GLU SEQRES 1 C 217 SER ASN ALA SER SER LYS LEU GLU ILE THR ASP PRO ARG SEQRES 2 C 217 ALA ALA LYS ILE GLU ASP ILE VAL GLU LEU PRO ILE LYS SEQRES 3 C 217 GLY VAL ARG ALA VAL GLN SER ASP GLY GLN ILE MET PHE SEQRES 4 C 217 LEU SER GLU ASN GLY ARG PHE VAL ILE SER GLY GLN ILE SEQRES 5 C 217 TYR ASP LEU TRP SER LYS LYS PRO LEU ASN THR MET SER SEQRES 6 C 217 GLN MET ARG ASP VAL ALA GLU ARG ILE HIS PHE LYS SER SEQRES 7 C 217 MET GLY MET ASP VAL ASP THR LEU ASN THR VAL SER MET SEQRES 8 C 217 GLY ARG GLY ASP LYS GLU VAL VAL VAL PHE VAL ASP PRO SEQRES 9 C 217 ARG CYS ALA VAL CYS HIS GLN LEU MET GLY ASP ALA LYS SEQRES 10 C 217 SER LEU VAL ASP ASP TYR THR PHE LYS PHE ILE VAL ILE SEQRES 11 C 217 PRO ALA LEU GLY ALA GLU SER ASN ARG LEU ALA LYS ASN SEQRES 12 C 217 LEU TYR CYS ALA LYS ASP LYS THR HIS ALA LEU ASP ALA SEQRES 13 C 217 LEU MET ASN ASN THR LEU GLY SER LEU PRO SER LYS GLU SEQRES 14 C 217 THR CYS ASP PRO GLY GLN TYR ASP GLN THR LEU LEU THR SEQRES 15 C 217 ALA HIS PHE ILE GLY ILE GLU GLY VAL PRO PHE VAL VAL SEQRES 16 C 217 ALA PRO ASP GLY ARG VAL SER LYS GLY ARG PRO LYS ASN SEQRES 17 C 217 LEU LYS SER TRP LEU GLU SER ALA GLU SEQRES 1 D 217 SER ASN ALA SER SER LYS LEU GLU ILE THR ASP PRO ARG SEQRES 2 D 217 ALA ALA LYS ILE GLU ASP ILE VAL GLU LEU PRO ILE LYS SEQRES 3 D 217 GLY VAL ARG ALA VAL GLN SER ASP GLY GLN ILE MET PHE SEQRES 4 D 217 LEU SER GLU ASN GLY ARG PHE VAL ILE SER GLY GLN ILE SEQRES 5 D 217 TYR ASP LEU TRP SER LYS LYS PRO LEU ASN THR MET SER SEQRES 6 D 217 GLN MET ARG ASP VAL ALA GLU ARG ILE HIS PHE LYS SER SEQRES 7 D 217 MET GLY MET ASP VAL ASP THR LEU ASN THR VAL SER MET SEQRES 8 D 217 GLY ARG GLY ASP LYS GLU VAL VAL VAL PHE VAL ASP PRO SEQRES 9 D 217 ARG CYS ALA VAL CYS HIS GLN LEU MET GLY ASP ALA LYS SEQRES 10 D 217 SER LEU VAL ASP ASP TYR THR PHE LYS PHE ILE VAL ILE SEQRES 11 D 217 PRO ALA LEU GLY ALA GLU SER ASN ARG LEU ALA LYS ASN SEQRES 12 D 217 LEU TYR CYS ALA LYS ASP LYS THR HIS ALA LEU ASP ALA SEQRES 13 D 217 LEU MET ASN ASN THR LEU GLY SER LEU PRO SER LYS GLU SEQRES 14 D 217 THR CYS ASP PRO GLY GLN TYR ASP GLN THR LEU LEU THR SEQRES 15 D 217 ALA HIS PHE ILE GLY ILE GLU GLY VAL PRO PHE VAL VAL SEQRES 16 D 217 ALA PRO ASP GLY ARG VAL SER LYS GLY ARG PRO LYS ASN SEQRES 17 D 217 LEU LYS SER TRP LEU GLU SER ALA GLU FORMUL 5 HOH *687(H2 O) HELIX 1 1 THR A 60 ARG A 70 1 11 HELIX 2 2 ASP A 79 LEU A 83 5 5 HELIX 3 3 CYS A 103 SER A 115 1 13 HELIX 4 4 ALA A 132 ALA A 144 1 13 HELIX 5 5 ASP A 146 THR A 148 5 3 HELIX 6 6 HIS A 149 ASN A 156 1 8 HELIX 7 7 THR A 158 LEU A 162 5 5 HELIX 8 8 ASP A 174 GLY A 184 1 11 HELIX 9 9 ASN A 205 GLU A 211 1 7 HELIX 10 10 THR B 60 ARG B 70 1 11 HELIX 11 11 ASP B 79 LEU B 83 5 5 HELIX 12 12 CYS B 103 LYS B 114 1 12 HELIX 13 13 SER B 115 VAL B 117 5 3 HELIX 14 14 ALA B 132 CYS B 143 1 12 HELIX 15 15 ASP B 146 THR B 148 5 3 HELIX 16 16 HIS B 149 ASN B 156 1 8 HELIX 17 17 THR B 158 LEU B 162 5 5 HELIX 18 18 ASP B 174 GLY B 184 1 11 HELIX 19 19 ASN B 205 GLU B 211 1 7 HELIX 20 20 THR C 60 ARG C 70 1 11 HELIX 21 21 ASP C 79 LEU C 83 5 5 HELIX 22 22 CYS C 103 LYS C 114 1 12 HELIX 23 23 SER C 115 VAL C 117 5 3 HELIX 24 24 ALA C 132 CYS C 143 1 12 HELIX 25 25 ASP C 146 THR C 148 5 3 HELIX 26 26 HIS C 149 ASN C 156 1 8 HELIX 27 27 THR C 158 LEU C 162 5 5 HELIX 28 28 ASP C 174 GLY C 184 1 11 HELIX 29 29 ASN C 205 SER C 212 1 8 HELIX 30 30 THR D 60 ARG D 70 1 11 HELIX 31 31 PHE D 73 GLY D 77 5 5 HELIX 32 32 ASP D 79 LEU D 83 5 5 HELIX 33 33 CYS D 103 SER D 115 1 13 HELIX 34 34 ALA D 132 CYS D 143 1 12 HELIX 35 35 HIS D 149 ASN D 156 1 8 HELIX 36 36 THR D 158 LEU D 162 5 5 HELIX 37 37 ASP D 174 GLY D 184 1 11 HELIX 38 38 ASN D 205 SER D 212 1 8 SHEET 1 A 8 ASP A 16 LEU A 20 0 SHEET 2 A 8 VAL B 25 SER B 30 -1 O ALA B 27 N VAL A 18 SHEET 3 A 8 GLN B 33 SER B 38 -1 O MET B 35 N VAL B 28 SHEET 4 A 8 PHE B 43 ASP B 51 -1 O ILE B 45 N PHE B 36 SHEET 5 A 8 PHE A 43 ASP A 51 -1 N SER A 46 O GLN B 48 SHEET 6 A 8 GLN A 33 SER A 38 -1 N SER A 38 O PHE A 43 SHEET 7 A 8 VAL A 25 SER A 30 -1 N VAL A 28 O MET A 35 SHEET 8 A 8 ILE B 14 LEU B 20 -1 O ASP B 16 N GLN A 29 SHEET 1 B 4 LYS A 56 LEU A 58 0 SHEET 2 B 4 PHE A 43 ASP A 51 -1 N ASP A 51 O LYS A 56 SHEET 3 B 4 PHE B 43 ASP B 51 -1 O GLN B 48 N SER A 46 SHEET 4 B 4 LYS B 56 LEU B 58 -1 O LYS B 56 N ASP B 51 SHEET 1 C 5 THR A 85 MET A 88 0 SHEET 2 C 5 TYR A 120 VAL A 126 -1 O PHE A 122 N MET A 88 SHEET 3 C 5 LYS A 93 VAL A 99 1 N VAL A 95 O LYS A 123 SHEET 4 C 5 PHE A 190 VAL A 192 -1 O VAL A 192 N VAL A 96 SHEET 5 C 5 VAL A 198 LYS A 200 -1 O SER A 199 N VAL A 191 SHEET 1 D 5 THR B 85 MET B 88 0 SHEET 2 D 5 TYR B 120 VAL B 126 -1 O PHE B 122 N MET B 88 SHEET 3 D 5 LYS B 93 VAL B 99 1 N LYS B 93 O THR B 121 SHEET 4 D 5 PHE B 190 VAL B 192 -1 O VAL B 192 N VAL B 96 SHEET 5 D 5 VAL B 198 LYS B 200 -1 O SER B 199 N VAL B 191 SHEET 1 E 8 ILE C 14 LEU C 20 0 SHEET 2 E 8 VAL D 25 SER D 30 -1 O ALA D 27 N VAL C 18 SHEET 3 E 8 GLN D 33 SER D 38 -1 O LEU D 37 N ARG D 26 SHEET 4 E 8 PHE D 43 ASP D 51 -1 O ILE D 45 N PHE D 36 SHEET 5 E 8 PHE C 43 ASP C 51 -1 N GLN C 48 O SER D 46 SHEET 6 E 8 GLN C 33 SER C 38 -1 N SER C 38 O PHE C 43 SHEET 7 E 8 VAL C 25 SER C 30 -1 N VAL C 28 O MET C 35 SHEET 8 E 8 ILE D 14 GLU D 19 -1 O VAL D 18 N ALA C 27 SHEET 1 F 4 LYS C 56 LEU C 58 0 SHEET 2 F 4 PHE C 43 ASP C 51 -1 N ASP C 51 O LYS C 56 SHEET 3 F 4 PHE D 43 ASP D 51 -1 O SER D 46 N GLN C 48 SHEET 4 F 4 LYS D 56 LEU D 58 -1 O LYS D 56 N ASP D 51 SHEET 1 G 5 THR C 85 GLY C 89 0 SHEET 2 G 5 TYR C 120 VAL C 126 -1 O PHE C 122 N MET C 88 SHEET 3 G 5 LYS C 93 VAL C 99 1 N VAL C 95 O LYS C 123 SHEET 4 G 5 PHE C 190 VAL C 192 -1 O PHE C 190 N PHE C 98 SHEET 5 G 5 VAL C 198 LYS C 200 -1 O SER C 199 N VAL C 191 SHEET 1 H 5 THR D 85 GLY D 89 0 SHEET 2 H 5 TYR D 120 VAL D 126 -1 O PHE D 124 N VAL D 86 SHEET 3 H 5 LYS D 93 VAL D 99 1 N VAL D 95 O LYS D 123 SHEET 4 H 5 PHE D 190 VAL D 192 -1 O PHE D 190 N PHE D 98 SHEET 5 H 5 VAL D 198 LYS D 200 -1 O SER D 199 N VAL D 191 SSBOND 1 CYS A 103 CYS A 106 1555 1555 2.13 SSBOND 2 CYS A 143 CYS A 168 1555 1555 2.06 SSBOND 3 CYS B 103 CYS B 106 1555 1555 2.09 SSBOND 4 CYS B 143 CYS B 168 1555 1555 2.04 SSBOND 5 CYS C 103 CYS C 106 1555 1555 2.10 SSBOND 6 CYS C 143 CYS C 168 1555 1555 2.06 SSBOND 7 CYS D 103 CYS D 106 1555 1555 2.12 SSBOND 8 CYS D 143 CYS D 168 1555 1555 2.06 CISPEP 1 VAL A 188 PRO A 189 0 -6.04 CISPEP 2 ARG B 10 ALA B 11 0 4.09 CISPEP 3 VAL B 188 PRO B 189 0 -7.21 CISPEP 4 VAL C 188 PRO C 189 0 -6.33 CISPEP 5 VAL D 188 PRO D 189 0 -5.89 CRYST1 54.330 108.270 139.020 90.00 90.00 90.00 P 21 21 21 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.018406 0.000000 0.000000 0.00000 SCALE2 0.000000 0.009236 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007193 0.00000